Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	sample_sig_gene_table.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:22	Correlate_Clinical_vs_Mutation_2014071500	table.1.txt	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	txt	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_Mutation.Level_4.2014071500.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	sample_sig_gene_table.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:22	Correlate_Clinical_vs_Mutation_2014071500	D3V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_Mutation.Level_4.2014071500.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	sample_sig_gene_table.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:22	Correlate_Clinical_vs_Mutation_2014071500	D2V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_Mutation.Level_4.2014071500.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	sample_sig_gene_table.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:22	Correlate_Clinical_vs_Mutation_2014071500	D4V3.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_Mutation.Level_4.2014071500.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	sample_sig_gene_table.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:22	Correlate_Clinical_vs_Mutation_2014071500	D4V3.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_Mutation.Level_4.2014071500.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	sample_sig_gene_table.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:22	Correlate_Clinical_vs_Mutation_2014071500	D1V2.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_Mutation.Level_4.2014071500.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	sample_sig_gene_table.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:22	Correlate_Clinical_vs_Mutation_2014071500	D2V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_Mutation.Level_4.2014071500.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	sample_sig_gene_table.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:22	Correlate_Clinical_vs_Mutation_2014071500	D1V2.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_Mutation.Level_4.2014071500.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	sample_sig_gene_table.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:22	Correlate_Clinical_vs_Mutation_2014071500	D4V3.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_Mutation.Level_4.2014071500.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	sample_sig_gene_table.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:22	Correlate_Clinical_vs_Mutation_2014071500	D3V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_Mutation.Level_4.2014071500.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	sample_sig_gene_table.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:22	Correlate_Clinical_vs_Mutation_2014071500	D4V3.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_Mutation.Level_4.2014071500.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	sample_sig_gene_table.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:22	Correlate_Clinical_vs_Mutation_2014071500	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_Mutation.Level_4.2014071500.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	sample_sig_gene_table.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:22	Correlate_Clinical_vs_Mutation_2014071500	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_Mutation.Level_4.2014071500.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	PCPG-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:22	Correlate_Clinical_vs_Mutation_2014071500	table.1.txt	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	txt	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_Mutation.Level_4.2014071500.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	PCPG-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:22	Correlate_Clinical_vs_Mutation_2014071500	D3V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_Mutation.Level_4.2014071500.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	PCPG-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:22	Correlate_Clinical_vs_Mutation_2014071500	D2V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_Mutation.Level_4.2014071500.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	PCPG-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:22	Correlate_Clinical_vs_Mutation_2014071500	D4V3.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_Mutation.Level_4.2014071500.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	PCPG-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:22	Correlate_Clinical_vs_Mutation_2014071500	D4V3.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_Mutation.Level_4.2014071500.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	PCPG-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:22	Correlate_Clinical_vs_Mutation_2014071500	D1V2.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_Mutation.Level_4.2014071500.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	PCPG-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:22	Correlate_Clinical_vs_Mutation_2014071500	D2V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_Mutation.Level_4.2014071500.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	PCPG-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:22	Correlate_Clinical_vs_Mutation_2014071500	D1V2.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_Mutation.Level_4.2014071500.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	PCPG-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:22	Correlate_Clinical_vs_Mutation_2014071500	D4V3.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_Mutation.Level_4.2014071500.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	PCPG-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:22	Correlate_Clinical_vs_Mutation_2014071500	D3V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_Mutation.Level_4.2014071500.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	PCPG-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:22	Correlate_Clinical_vs_Mutation_2014071500	D4V3.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_Mutation.Level_4.2014071500.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	PCPG-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:22	Correlate_Clinical_vs_Mutation_2014071500	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_Mutation.Level_4.2014071500.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	PCPG-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:22	Correlate_Clinical_vs_Mutation_2014071500	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_PCPG-TP.Correlate_Clinical_vs_Mutation.Level_4.2014071500.0.0	yes
