[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oTPCPG-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/PCPG-TP/10667976/PCPG-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PCPG-TP/10013785/transformed.cor.cli.txt"

nPatients in clinical file=179, in cluster file=160, common to both=160
[1]  30 160
[1] "AMP PEAK 1(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE 
                          30                          130 
  AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE 
                          30                          130 
[1] "AMP PEAK 2(4Q25) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 2(4Q25) MUTATED AMP PEAK 2(4Q25) WILD-TYPE 
                         6                        154 
  AMP PEAK 2(4Q25) MUTATED AMP PEAK 2(4Q25) WILD-TYPE 
                         6                        154 
[1] "AMP PEAK 3(4Q31.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 3(4Q31.1) MUTATED AMP PEAK 3(4Q31.1) WILD-TYPE 
                          12                          148 
  AMP PEAK 3(4Q31.1) MUTATED AMP PEAK 3(4Q31.1) WILD-TYPE 
                          12                          148 
[1] "AMP PEAK 4(11P15.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 4(11P15.2) MUTATED AMP PEAK 4(11P15.2) WILD-TYPE 
                            7                           153 
  AMP PEAK 4(11P15.2) MUTATED AMP PEAK 4(11P15.2) WILD-TYPE 
                            7                           153 
[1] "AMP PEAK 5(12Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 5(12Q13.3) MUTATED AMP PEAK 5(12Q13.3) WILD-TYPE 
                           16                           144 
  AMP PEAK 5(12Q13.3) MUTATED AMP PEAK 5(12Q13.3) WILD-TYPE 
                           16                           144 
[1] "AMP PEAK 6(14Q24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 6(14Q24.3) MUTATED AMP PEAK 6(14Q24.3) WILD-TYPE 
                           10                           150 
  AMP PEAK 6(14Q24.3) MUTATED AMP PEAK 6(14Q24.3) WILD-TYPE 
                           10                           150 
[1] "AMP PEAK 7(17Q21.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 7(17Q21.31) MUTATED AMP PEAK 7(17Q21.31) WILD-TYPE 
                            15                            145 
  AMP PEAK 7(17Q21.31) MUTATED AMP PEAK 7(17Q21.31) WILD-TYPE 
                            15                            145 
[1] "DEL PEAK  1(1P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P12) MUTATED DEL PEAK  1(1P12) WILD-TYPE 
                        111                          49 
  DEL PEAK  1(1P12) MUTATED DEL PEAK  1(1P12) WILD-TYPE 
                        111                          49 
[1] "DEL PEAK  2(1Q44) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE 
                         21                         139 
  DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE 
                         21                         139 
[1] "DEL PEAK  3(2Q34) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2Q34) MUTATED DEL PEAK  3(2Q34) WILD-TYPE 
                         13                         147 
  DEL PEAK  3(2Q34) MUTATED DEL PEAK  3(2Q34) WILD-TYPE 
                         13                         147 
[1] "DEL PEAK  4(3P24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(3P24.1) MUTATED DEL PEAK  4(3P24.1) WILD-TYPE 
                           60                           100 
  DEL PEAK  4(3P24.1) MUTATED DEL PEAK  4(3P24.1) WILD-TYPE 
                           60                           100 
[1] "DEL PEAK  5(3Q26.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3Q26.1) MUTATED DEL PEAK  5(3Q26.1) WILD-TYPE 
                           93                            67 
  DEL PEAK  5(3Q26.1) MUTATED DEL PEAK  5(3Q26.1) WILD-TYPE 
                           93                            67 
[1] "DEL PEAK  6(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE 
                           15                           145 
  DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE 
                           15                           145 
[1] "DEL PEAK  7(4Q35.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE 
                           16                           144 
  DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE 
                           16                           144 
[1] "DEL PEAK  8(5Q15) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(5Q15) MUTATED DEL PEAK  8(5Q15) WILD-TYPE 
                         12                         148 
  DEL PEAK  8(5Q15) MUTATED DEL PEAK  8(5Q15) WILD-TYPE 
                         12                         148 
[1] "DEL PEAK  9(6P12.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE 
                           10                           150 
  DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE 
                           10                           150 
[1] "DEL PEAK 10(6Q16.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(6Q16.1) MUTATED DEL PEAK 10(6Q16.1) WILD-TYPE 
                           24                           136 
  DEL PEAK 10(6Q16.1) MUTATED DEL PEAK 10(6Q16.1) WILD-TYPE 
                           24                           136 
[1] "DEL PEAK 11(7Q33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(7Q33) MUTATED DEL PEAK 11(7Q33) WILD-TYPE 
                          8                         152 
  DEL PEAK 11(7Q33) MUTATED DEL PEAK 11(7Q33) WILD-TYPE 
                          8                         152 
[1] "DEL PEAK 12(8P22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(8P22) MUTATED DEL PEAK 12(8P22) WILD-TYPE 
                         24                         136 
  DEL PEAK 12(8P22) MUTATED DEL PEAK 12(8P22) WILD-TYPE 
                         24                         136 
[1] "DEL PEAK 13(9P24.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(9P24.2) MUTATED DEL PEAK 13(9P24.2) WILD-TYPE 
                           15                           145 
  DEL PEAK 13(9P24.2) MUTATED DEL PEAK 13(9P24.2) WILD-TYPE 
                           15                           145 
[1] "DEL PEAK 14(9Q21.12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(9Q21.12) MUTATED DEL PEAK 14(9Q21.12) WILD-TYPE 
                            14                            146 
  DEL PEAK 14(9Q21.12) MUTATED DEL PEAK 14(9Q21.12) WILD-TYPE 
                            14                            146 
[1] "DEL PEAK 15(11P15.4) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(11P15.4) MUTATED DEL PEAK 15(11P15.4) WILD-TYPE 
                            57                            103 
  DEL PEAK 15(11P15.4) MUTATED DEL PEAK 15(11P15.4) WILD-TYPE 
                            57                            103 
[1] "DEL PEAK 16(11Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(11Q22.1) MUTATED DEL PEAK 16(11Q22.1) WILD-TYPE 
                            44                            116 
  DEL PEAK 16(11Q22.1) MUTATED DEL PEAK 16(11Q22.1) WILD-TYPE 
                            44                            116 
[1] "DEL PEAK 17(12Q21.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(12Q21.33) MUTATED DEL PEAK 17(12Q21.33) WILD-TYPE 
                              8                             152 
  DEL PEAK 17(12Q21.33) MUTATED DEL PEAK 17(12Q21.33) WILD-TYPE 
                              8                             152 
[1] "DEL PEAK 18(13Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(13Q22.3) MUTATED DEL PEAK 18(13Q22.3) WILD-TYPE 
                             7                            153 
  DEL PEAK 18(13Q22.3) MUTATED DEL PEAK 18(13Q22.3) WILD-TYPE 
                             7                            153 
[1] "DEL PEAK 19(16Q21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(16Q21) MUTATED DEL PEAK 19(16Q21) WILD-TYPE 
                           5                          155 
  DEL PEAK 19(16Q21) MUTATED DEL PEAK 19(16Q21) WILD-TYPE 
                           5                          155 
[1] "DEL PEAK 20(17P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(17P13.2) MUTATED DEL PEAK 20(17P13.2) WILD-TYPE 
                            64                             96 
  DEL PEAK 20(17P13.2) MUTATED DEL PEAK 20(17P13.2) WILD-TYPE 
                            64                             96 
[1] "DEL PEAK 21(17Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(17Q11.2) MUTATED DEL PEAK 21(17Q11.2) WILD-TYPE 
                            42                            118 
  DEL PEAK 21(17Q11.2) MUTATED DEL PEAK 21(17Q11.2) WILD-TYPE 
                            42                            118 
[1] "DEL PEAK 22(22Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(22Q13.31) MUTATED DEL PEAK 22(22Q13.31) WILD-TYPE 
                             64                              96 
  DEL PEAK 22(22Q13.31) MUTATED DEL PEAK 22(22Q13.31) WILD-TYPE 
                             64                              96 
[1] "DEL PEAK 23(XP21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(XP21.1) MUTATED DEL PEAK 23(XP21.1) WILD-TYPE 
                           46                           114 
  DEL PEAK 23(XP21.1) MUTATED DEL PEAK 23(XP21.1) WILD-TYPE 
                           46                           114 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 8 rows and 160 columns.

Variable 1:'CN_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 160 columns, 0 survival variables, and 8 non-survival variables.
CN_CNMF, nv=5, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK 1(1Q21.3) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 1(1Q21.3) MUTATED       15      3      5      2      5
  AMP PEAK 1(1Q21.3) WILD-TYPE      0     21     50     41     18
D1V1, multiclass
        clus
vv       AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE
  CLUS_1                         15                            0
  CLUS_2                          3                           21
  CLUS_3                          5                           50
  CLUS_4                          2                           41
  CLUS_5                          5                           18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(1Q21.3) MUTATED        9     15      6
  AMP PEAK 1(1Q21.3) WILD-TYPE     31     62     37
D1V2, multiclass
        clus
vv       AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE
  CLUS_1                          9                           31
  CLUS_2                         15                           62
  CLUS_3                          6                           37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(1Q21.3) MUTATED        8     12      8      2
  AMP PEAK 1(1Q21.3) WILD-TYPE     25     51     35     19
D1V3, multiclass
        clus
vv       AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE
  CLUS_1                          8                           25
  CLUS_2                         12                           51
  CLUS_3                          8                           35
  CLUS_4                          2                           19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(1Q21.3) MUTATED        6     12      9      3
  AMP PEAK 1(1Q21.3) WILD-TYPE     27     51     34     18
D1V4, multiclass
        clus
vv       AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE
  CLUS_1                          6                           27
  CLUS_2                         12                           51
  CLUS_3                          9                           34
  CLUS_4                          3                           18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(1Q21.3) MUTATED       11     11      8
  AMP PEAK 1(1Q21.3) WILD-TYPE     53     46     31
D1V5, multiclass
        clus
vv       AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE
  CLUS_1                         11                           53
  CLUS_2                         11                           46
  CLUS_3                          8                           31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(1Q21.3) MUTATED       15      9      4      2
  AMP PEAK 1(1Q21.3) WILD-TYPE     50     44     14     22
D1V6, multiclass
        clus
vv       AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE
  CLUS_1                         15                           50
  CLUS_2                          9                           44
  CLUS_3                          4                           14
  CLUS_4                          2                           22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(1Q21.3) MUTATED        4     12     14
  AMP PEAK 1(1Q21.3) WILD-TYPE     33     54     43
D1V7, multiclass
        clus
vv       AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE
  CLUS_1                          4                           33
  CLUS_2                         12                           54
  CLUS_3                         14                           43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(1Q21.3) MUTATED       14     10      6
  AMP PEAK 1(1Q21.3) WILD-TYPE     54     43     33
D1V8, multiclass
        clus
vv       AMP PEAK 1(1Q21.3) MUTATED AMP PEAK 1(1Q21.3) WILD-TYPE
  CLUS_1                         14                           54
  CLUS_2                         10                           43
  CLUS_3                          6                           33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK 2(4Q25) MUTATION ANALYSIS
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 2(4Q25) MUTATED        0      1      2      1      2
  AMP PEAK 2(4Q25) WILD-TYPE     15     23     53     42     21
D2V1, multiclass
        clus
vv       AMP PEAK 2(4Q25) MUTATED AMP PEAK 2(4Q25) WILD-TYPE
  CLUS_1                        0                         15
  CLUS_2                        1                         23
  CLUS_3                        2                         53
  CLUS_4                        1                         42
  CLUS_5                        2                         21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(4Q25) MUTATED        1      4      1
  AMP PEAK 2(4Q25) WILD-TYPE     39     73     42
D2V2, multiclass
        clus
vv       AMP PEAK 2(4Q25) MUTATED AMP PEAK 2(4Q25) WILD-TYPE
  CLUS_1                        1                         39
  CLUS_2                        4                         73
  CLUS_3                        1                         42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(4Q25) MUTATED        2      2      0      2
  AMP PEAK 2(4Q25) WILD-TYPE     31     61     43     19
D2V3, multiclass
        clus
vv       AMP PEAK 2(4Q25) MUTATED AMP PEAK 2(4Q25) WILD-TYPE
  CLUS_1                        2                         31
  CLUS_2                        2                         61
  CLUS_3                        0                         43
  CLUS_4                        2                         19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(4Q25) MUTATED        2      3      0      1
  AMP PEAK 2(4Q25) WILD-TYPE     31     60     43     20
D2V4, multiclass
        clus
vv       AMP PEAK 2(4Q25) MUTATED AMP PEAK 2(4Q25) WILD-TYPE
  CLUS_1                        2                         31
  CLUS_2                        3                         60
  CLUS_3                        0                         43
  CLUS_4                        1                         20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(4Q25) MUTATED        2      3      1
  AMP PEAK 2(4Q25) WILD-TYPE     62     54     38
D2V5, multiclass
        clus
vv       AMP PEAK 2(4Q25) MUTATED AMP PEAK 2(4Q25) WILD-TYPE
  CLUS_1                        2                         62
  CLUS_2                        3                         54
  CLUS_3                        1                         38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(4Q25) MUTATED        2      3      1      0
  AMP PEAK 2(4Q25) WILD-TYPE     63     50     17     24
D2V6, multiclass
        clus
vv       AMP PEAK 2(4Q25) MUTATED AMP PEAK 2(4Q25) WILD-TYPE
  CLUS_1                        2                         63
  CLUS_2                        3                         50
  CLUS_3                        1                         17
  CLUS_4                        0                         24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(4Q25) MUTATED        0      4      2
  AMP PEAK 2(4Q25) WILD-TYPE     37     62     55
D2V7, multiclass
        clus
vv       AMP PEAK 2(4Q25) MUTATED AMP PEAK 2(4Q25) WILD-TYPE
  CLUS_1                        0                         37
  CLUS_2                        4                         62
  CLUS_3                        2                         55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(4Q25) MUTATED        2      3      1
  AMP PEAK 2(4Q25) WILD-TYPE     66     50     38
D2V8, multiclass
        clus
vv       AMP PEAK 2(4Q25) MUTATED AMP PEAK 2(4Q25) WILD-TYPE
  CLUS_1                        2                         66
  CLUS_2                        3                         50
  CLUS_3                        1                         38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK 3(4Q31.1) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 3(4Q31.1) MUTATED        0      5      4      1      2
  AMP PEAK 3(4Q31.1) WILD-TYPE     15     19     51     42     21
D3V1, multiclass
        clus
vv       AMP PEAK 3(4Q31.1) MUTATED AMP PEAK 3(4Q31.1) WILD-TYPE
  CLUS_1                          0                           15
  CLUS_2                          5                           19
  CLUS_3                          4                           51
  CLUS_4                          1                           42
  CLUS_5                          2                           21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(4Q31.1) MUTATED        0      7      5
  AMP PEAK 3(4Q31.1) WILD-TYPE     40     70     38
D3V2, multiclass
        clus
vv       AMP PEAK 3(4Q31.1) MUTATED AMP PEAK 3(4Q31.1) WILD-TYPE
  CLUS_1                          0                           40
  CLUS_2                          7                           70
  CLUS_3                          5                           38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(4Q31.1) MUTATED        1      5      4      2
  AMP PEAK 3(4Q31.1) WILD-TYPE     32     58     39     19
D3V3, multiclass
        clus
vv       AMP PEAK 3(4Q31.1) MUTATED AMP PEAK 3(4Q31.1) WILD-TYPE
  CLUS_1                          1                           32
  CLUS_2                          5                           58
  CLUS_3                          4                           39
  CLUS_4                          2                           19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(4Q31.1) MUTATED        6      5      0      1
  AMP PEAK 3(4Q31.1) WILD-TYPE     27     58     43     20
D3V4, multiclass
        clus
vv       AMP PEAK 3(4Q31.1) MUTATED AMP PEAK 3(4Q31.1) WILD-TYPE
  CLUS_1                          6                           27
  CLUS_2                          5                           58
  CLUS_3                          0                           43
  CLUS_4                          1                           20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(4Q31.1) MUTATED        2      6      4
  AMP PEAK 3(4Q31.1) WILD-TYPE     62     51     35
D3V5, multiclass
        clus
vv       AMP PEAK 3(4Q31.1) MUTATED AMP PEAK 3(4Q31.1) WILD-TYPE
  CLUS_1                          2                           62
  CLUS_2                          6                           51
  CLUS_3                          4                           35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(4Q31.1) MUTATED        4      5      3      0
  AMP PEAK 3(4Q31.1) WILD-TYPE     61     48     15     24
D3V6, multiclass
        clus
vv       AMP PEAK 3(4Q31.1) MUTATED AMP PEAK 3(4Q31.1) WILD-TYPE
  CLUS_1                          4                           61
  CLUS_2                          5                           48
  CLUS_3                          3                           15
  CLUS_4                          0                           24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(4Q31.1) MUTATED        0      6      6
  AMP PEAK 3(4Q31.1) WILD-TYPE     37     60     51
D3V7, multiclass
        clus
vv       AMP PEAK 3(4Q31.1) MUTATED AMP PEAK 3(4Q31.1) WILD-TYPE
  CLUS_1                          0                           37
  CLUS_2                          6                           60
  CLUS_3                          6                           51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(4Q31.1) MUTATED        4      5      3
  AMP PEAK 3(4Q31.1) WILD-TYPE     64     48     36
D3V8, multiclass
        clus
vv       AMP PEAK 3(4Q31.1) MUTATED AMP PEAK 3(4Q31.1) WILD-TYPE
  CLUS_1                          4                           64
  CLUS_2                          5                           48
  CLUS_3                          3                           36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK 4(11P15.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 4(11P15.2) MUTATED        0      0      5      1      1
  AMP PEAK 4(11P15.2) WILD-TYPE     15     24     50     42     22
D4V1, multiclass
        clus
vv       AMP PEAK 4(11P15.2) MUTATED AMP PEAK 4(11P15.2) WILD-TYPE
  CLUS_1                           0                            15
  CLUS_2                           0                            24
  CLUS_3                           5                            50
  CLUS_4                           1                            42
  CLUS_5                           1                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(11P15.2) MUTATED        1      6      0
  AMP PEAK 4(11P15.2) WILD-TYPE     39     71     43
D4V2, multiclass
        clus
vv       AMP PEAK 4(11P15.2) MUTATED AMP PEAK 4(11P15.2) WILD-TYPE
  CLUS_1                           1                            39
  CLUS_2                           6                            71
  CLUS_3                           0                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 4(11P15.2) MUTATED        1      6      0      0
  AMP PEAK 4(11P15.2) WILD-TYPE     32     57     43     21
D4V3, multiclass
        clus
vv       AMP PEAK 4(11P15.2) MUTATED AMP PEAK 4(11P15.2) WILD-TYPE
  CLUS_1                           1                            32
  CLUS_2                           6                            57
  CLUS_3                           0                            43
  CLUS_4                           0                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 4(11P15.2) MUTATED        1      6      0      0
  AMP PEAK 4(11P15.2) WILD-TYPE     32     57     43     21
D4V4, multiclass
        clus
vv       AMP PEAK 4(11P15.2) MUTATED AMP PEAK 4(11P15.2) WILD-TYPE
  CLUS_1                           1                            32
  CLUS_2                           6                            57
  CLUS_3                           0                            43
  CLUS_4                           0                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(11P15.2) MUTATED        1      5      1
  AMP PEAK 4(11P15.2) WILD-TYPE     63     52     38
D4V5, multiclass
        clus
vv       AMP PEAK 4(11P15.2) MUTATED AMP PEAK 4(11P15.2) WILD-TYPE
  CLUS_1                           1                            63
  CLUS_2                           5                            52
  CLUS_3                           1                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 4(11P15.2) MUTATED        1      5      0      1
  AMP PEAK 4(11P15.2) WILD-TYPE     64     48     18     23
D4V6, multiclass
        clus
vv       AMP PEAK 4(11P15.2) MUTATED AMP PEAK 4(11P15.2) WILD-TYPE
  CLUS_1                           1                            64
  CLUS_2                           5                            48
  CLUS_3                           0                            18
  CLUS_4                           1                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(11P15.2) MUTATED        1      6      0
  AMP PEAK 4(11P15.2) WILD-TYPE     36     60     57
D4V7, multiclass
        clus
vv       AMP PEAK 4(11P15.2) MUTATED AMP PEAK 4(11P15.2) WILD-TYPE
  CLUS_1                           1                            36
  CLUS_2                           6                            60
  CLUS_3                           0                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(11P15.2) MUTATED        1      5      1
  AMP PEAK 4(11P15.2) WILD-TYPE     67     48     38
D4V8, multiclass
        clus
vv       AMP PEAK 4(11P15.2) MUTATED AMP PEAK 4(11P15.2) WILD-TYPE
  CLUS_1                           1                            67
  CLUS_2                           5                            48
  CLUS_3                           1                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK 5(12Q13.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 5(12Q13.3) MUTATED        2      1      3      9      1
  AMP PEAK 5(12Q13.3) WILD-TYPE     13     23     52     34     22
D5V1, multiclass
        clus
vv       AMP PEAK 5(12Q13.3) MUTATED AMP PEAK 5(12Q13.3) WILD-TYPE
  CLUS_1                           2                            13
  CLUS_2                           1                            23
  CLUS_3                           3                            52
  CLUS_4                           9                            34
  CLUS_5                           1                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(12Q13.3) MUTATED        6      4      6
  AMP PEAK 5(12Q13.3) WILD-TYPE     34     73     37
D5V2, multiclass
        clus
vv       AMP PEAK 5(12Q13.3) MUTATED AMP PEAK 5(12Q13.3) WILD-TYPE
  CLUS_1                           6                            34
  CLUS_2                           4                            73
  CLUS_3                           6                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 5(12Q13.3) MUTATED        5      5      5      1
  AMP PEAK 5(12Q13.3) WILD-TYPE     28     58     38     20
D5V3, multiclass
        clus
vv       AMP PEAK 5(12Q13.3) MUTATED AMP PEAK 5(12Q13.3) WILD-TYPE
  CLUS_1                           5                            28
  CLUS_2                           5                            58
  CLUS_3                           5                            38
  CLUS_4                           1                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 5(12Q13.3) MUTATED        5      5      5      1
  AMP PEAK 5(12Q13.3) WILD-TYPE     28     58     38     20
D5V4, multiclass
        clus
vv       AMP PEAK 5(12Q13.3) MUTATED AMP PEAK 5(12Q13.3) WILD-TYPE
  CLUS_1                           5                            28
  CLUS_2                           5                            58
  CLUS_3                           5                            38
  CLUS_4                           1                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(12Q13.3) MUTATED       11      4      1
  AMP PEAK 5(12Q13.3) WILD-TYPE     53     53     38
D5V5, multiclass
        clus
vv       AMP PEAK 5(12Q13.3) MUTATED AMP PEAK 5(12Q13.3) WILD-TYPE
  CLUS_1                          11                            53
  CLUS_2                           4                            53
  CLUS_3                           1                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 5(12Q13.3) MUTATED       10      4      0      2
  AMP PEAK 5(12Q13.3) WILD-TYPE     55     49     18     22
D5V6, multiclass
        clus
vv       AMP PEAK 5(12Q13.3) MUTATED AMP PEAK 5(12Q13.3) WILD-TYPE
  CLUS_1                          10                            55
  CLUS_2                           4                            49
  CLUS_3                           0                            18
  CLUS_4                           2                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(12Q13.3) MUTATED        9      4      3
  AMP PEAK 5(12Q13.3) WILD-TYPE     28     62     54
D5V7, multiclass
        clus
vv       AMP PEAK 5(12Q13.3) MUTATED AMP PEAK 5(12Q13.3) WILD-TYPE
  CLUS_1                           9                            28
  CLUS_2                           4                            62
  CLUS_3                           3                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(12Q13.3) MUTATED       11      3      2
  AMP PEAK 5(12Q13.3) WILD-TYPE     57     50     37
D5V8, multiclass
        clus
vv       AMP PEAK 5(12Q13.3) MUTATED AMP PEAK 5(12Q13.3) WILD-TYPE
  CLUS_1                          11                            57
  CLUS_2                           3                            50
  CLUS_3                           2                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK 6(14Q24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 6(14Q24.3) MUTATED        0      0      1      9      0
  AMP PEAK 6(14Q24.3) WILD-TYPE     15     24     54     34     23
D6V1, multiclass
        clus
vv       AMP PEAK 6(14Q24.3) MUTATED AMP PEAK 6(14Q24.3) WILD-TYPE
  CLUS_1                           0                            15
  CLUS_2                           0                            24
  CLUS_3                           1                            54
  CLUS_4                           9                            34
  CLUS_5                           0                            23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(14Q24.3) MUTATED        5      4      1
  AMP PEAK 6(14Q24.3) WILD-TYPE     35     73     42
D6V2, multiclass
        clus
vv       AMP PEAK 6(14Q24.3) MUTATED AMP PEAK 6(14Q24.3) WILD-TYPE
  CLUS_1                           5                            35
  CLUS_2                           4                            73
  CLUS_3                           1                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 6(14Q24.3) MUTATED        3      3      3      1
  AMP PEAK 6(14Q24.3) WILD-TYPE     30     60     40     20
D6V3, multiclass
        clus
vv       AMP PEAK 6(14Q24.3) MUTATED AMP PEAK 6(14Q24.3) WILD-TYPE
  CLUS_1                           3                            30
  CLUS_2                           3                            60
  CLUS_3                           3                            40
  CLUS_4                           1                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 6(14Q24.3) MUTATED        5      3      2      0
  AMP PEAK 6(14Q24.3) WILD-TYPE     28     60     41     21
D6V4, multiclass
        clus
vv       AMP PEAK 6(14Q24.3) MUTATED AMP PEAK 6(14Q24.3) WILD-TYPE
  CLUS_1                           5                            28
  CLUS_2                           3                            60
  CLUS_3                           2                            41
  CLUS_4                           0                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(14Q24.3) MUTATED        6      2      2
  AMP PEAK 6(14Q24.3) WILD-TYPE     58     55     37
D6V5, multiclass
        clus
vv       AMP PEAK 6(14Q24.3) MUTATED AMP PEAK 6(14Q24.3) WILD-TYPE
  CLUS_1                           6                            58
  CLUS_2                           2                            55
  CLUS_3                           2                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 6(14Q24.3) MUTATED        6      2      1      1
  AMP PEAK 6(14Q24.3) WILD-TYPE     59     51     17     23
D6V6, multiclass
        clus
vv       AMP PEAK 6(14Q24.3) MUTATED AMP PEAK 6(14Q24.3) WILD-TYPE
  CLUS_1                           6                            59
  CLUS_2                           2                            51
  CLUS_3                           1                            17
  CLUS_4                           1                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(14Q24.3) MUTATED        5      4      1
  AMP PEAK 6(14Q24.3) WILD-TYPE     32     62     56
D6V7, multiclass
        clus
vv       AMP PEAK 6(14Q24.3) MUTATED AMP PEAK 6(14Q24.3) WILD-TYPE
  CLUS_1                           5                            32
  CLUS_2                           4                            62
  CLUS_3                           1                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(14Q24.3) MUTATED        6      2      2
  AMP PEAK 6(14Q24.3) WILD-TYPE     62     51     37
D6V8, multiclass
        clus
vv       AMP PEAK 6(14Q24.3) MUTATED AMP PEAK 6(14Q24.3) WILD-TYPE
  CLUS_1                           6                            62
  CLUS_2                           2                            51
  CLUS_3                           2                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK 7(17Q21.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 7(17Q21.31) MUTATED        2      5      5      1      2
  AMP PEAK 7(17Q21.31) WILD-TYPE     13     19     50     42     21
D7V1, multiclass
        clus
vv       AMP PEAK 7(17Q21.31) MUTATED AMP PEAK 7(17Q21.31) WILD-TYPE
  CLUS_1                            2                             13
  CLUS_2                            5                             19
  CLUS_3                            5                             50
  CLUS_4                            1                             42
  CLUS_5                            2                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(17Q21.31) MUTATED        3      7      5
  AMP PEAK 7(17Q21.31) WILD-TYPE     37     70     38
D7V2, multiclass
        clus
vv       AMP PEAK 7(17Q21.31) MUTATED AMP PEAK 7(17Q21.31) WILD-TYPE
  CLUS_1                            3                             37
  CLUS_2                            7                             70
  CLUS_3                            5                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 7(17Q21.31) MUTATED        3      5      6      1
  AMP PEAK 7(17Q21.31) WILD-TYPE     30     58     37     20
D7V3, multiclass
        clus
vv       AMP PEAK 7(17Q21.31) MUTATED AMP PEAK 7(17Q21.31) WILD-TYPE
  CLUS_1                            3                             30
  CLUS_2                            5                             58
  CLUS_3                            6                             37
  CLUS_4                            1                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 7(17Q21.31) MUTATED        9      5      1      0
  AMP PEAK 7(17Q21.31) WILD-TYPE     24     58     42     21
D7V4, multiclass
        clus
vv       AMP PEAK 7(17Q21.31) MUTATED AMP PEAK 7(17Q21.31) WILD-TYPE
  CLUS_1                            9                             24
  CLUS_2                            5                             58
  CLUS_3                            1                             42
  CLUS_4                            0                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(17Q21.31) MUTATED        7      5      3
  AMP PEAK 7(17Q21.31) WILD-TYPE     57     52     36
D7V5, multiclass
        clus
vv       AMP PEAK 7(17Q21.31) MUTATED AMP PEAK 7(17Q21.31) WILD-TYPE
  CLUS_1                            7                             57
  CLUS_2                            5                             52
  CLUS_3                            3                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 7(17Q21.31) MUTATED        9      4      2      0
  AMP PEAK 7(17Q21.31) WILD-TYPE     56     49     16     24
D7V6, multiclass
        clus
vv       AMP PEAK 7(17Q21.31) MUTATED AMP PEAK 7(17Q21.31) WILD-TYPE
  CLUS_1                            9                             56
  CLUS_2                            4                             49
  CLUS_3                            2                             16
  CLUS_4                            0                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(17Q21.31) MUTATED        1      6      8
  AMP PEAK 7(17Q21.31) WILD-TYPE     36     60     49
D7V7, multiclass
        clus
vv       AMP PEAK 7(17Q21.31) MUTATED AMP PEAK 7(17Q21.31) WILD-TYPE
  CLUS_1                            1                             36
  CLUS_2                            6                             60
  CLUS_3                            8                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(17Q21.31) MUTATED        9      4      2
  AMP PEAK 7(17Q21.31) WILD-TYPE     59     49     37
D7V8, multiclass
        clus
vv       AMP PEAK 7(17Q21.31) MUTATED AMP PEAK 7(17Q21.31) WILD-TYPE
  CLUS_1                            9                             59
  CLUS_2                            4                             49
  CLUS_3                            2                             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = DEL PEAK  1(1P12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P12) MUTATED       14      0     48     27     22
  DEL PEAK  1(1P12) WILD-TYPE      1     24      7     16      1
D8V1, multiclass
        clus
vv       DEL PEAK  1(1P12) MUTATED DEL PEAK  1(1P12) WILD-TYPE
  CLUS_1                        14                           1
  CLUS_2                         0                          24
  CLUS_3                        48                           7
  CLUS_4                        27                          16
  CLUS_5                        22                           1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P12) MUTATED       24     67     20
  DEL PEAK  1(1P12) WILD-TYPE     16     10     23
D8V2, multiclass
        clus
vv       DEL PEAK  1(1P12) MUTATED DEL PEAK  1(1P12) WILD-TYPE
  CLUS_1                        24                          16
  CLUS_2                        67                          10
  CLUS_3                        20                          23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P12) MUTATED       24     57     20     10
  DEL PEAK  1(1P12) WILD-TYPE      9      6     23     11
D8V3, multiclass
        clus
vv       DEL PEAK  1(1P12) MUTATED DEL PEAK  1(1P12) WILD-TYPE
  CLUS_1                        24                           9
  CLUS_2                        57                           6
  CLUS_3                        20                          23
  CLUS_4                        10                          11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P12) MUTATED       18     57     27      9
  DEL PEAK  1(1P12) WILD-TYPE     15      6     16     12
D8V4, multiclass
        clus
vv       DEL PEAK  1(1P12) MUTATED DEL PEAK  1(1P12) WILD-TYPE
  CLUS_1                        18                          15
  CLUS_2                        57                           6
  CLUS_3                        27                          16
  CLUS_4                         9                          12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P12) MUTATED       38     50     23
  DEL PEAK  1(1P12) WILD-TYPE     26      7     16
D8V5, multiclass
        clus
vv       DEL PEAK  1(1P12) MUTATED DEL PEAK  1(1P12) WILD-TYPE
  CLUS_1                        38                          26
  CLUS_2                        50                           7
  CLUS_3                        23                          16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P12) MUTATED       40     45     12     14
  DEL PEAK  1(1P12) WILD-TYPE     25      8      6     10
D8V6, multiclass
        clus
vv       DEL PEAK  1(1P12) MUTATED DEL PEAK  1(1P12) WILD-TYPE
  CLUS_1                        40                          25
  CLUS_2                        45                           8
  CLUS_3                        12                           6
  CLUS_4                        14                          10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P12) MUTATED       21     57     33
  DEL PEAK  1(1P12) WILD-TYPE     16      9     24
D8V7, multiclass
        clus
vv       DEL PEAK  1(1P12) MUTATED DEL PEAK  1(1P12) WILD-TYPE
  CLUS_1                        21                          16
  CLUS_2                        57                           9
  CLUS_3                        33                          24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P12) MUTATED       41     47     23
  DEL PEAK  1(1P12) WILD-TYPE     27      6     16
D8V8, multiclass
        clus
vv       DEL PEAK  1(1P12) MUTATED DEL PEAK  1(1P12) WILD-TYPE
  CLUS_1                        41                          27
  CLUS_2                        47                           6
  CLUS_3                        23                          16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = DEL PEAK  2(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1Q44) MUTATED        0      1      7     11      2
  DEL PEAK  2(1Q44) WILD-TYPE     15     23     48     32     21
D9V1, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                         0                          15
  CLUS_2                         1                          23
  CLUS_3                         7                          48
  CLUS_4                        11                          32
  CLUS_5                         2                          21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q44) MUTATED        8      8      5
  DEL PEAK  2(1Q44) WILD-TYPE     32     69     38
D9V2, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                         8                          32
  CLUS_2                         8                          69
  CLUS_3                         5                          38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1Q44) MUTATED        8      4      7      2
  DEL PEAK  2(1Q44) WILD-TYPE     25     59     36     19
D9V3, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                         8                          25
  CLUS_2                         4                          59
  CLUS_3                         7                          36
  CLUS_4                         2                          19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1Q44) MUTATED        7      5      7      2
  DEL PEAK  2(1Q44) WILD-TYPE     26     58     36     19
D9V4, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                         7                          26
  CLUS_2                         5                          58
  CLUS_3                         7                          36
  CLUS_4                         2                          19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q44) MUTATED       11      5      5
  DEL PEAK  2(1Q44) WILD-TYPE     53     52     34
D9V5, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        11                          53
  CLUS_2                         5                          52
  CLUS_3                         5                          34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1Q44) MUTATED       11      5      2      3
  DEL PEAK  2(1Q44) WILD-TYPE     54     48     16     21
D9V6, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        11                          54
  CLUS_2                         5                          48
  CLUS_3                         2                          16
  CLUS_4                         3                          21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q44) MUTATED       10      5      6
  DEL PEAK  2(1Q44) WILD-TYPE     27     61     51
D9V7, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        10                          27
  CLUS_2                         5                          61
  CLUS_3                         6                          51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1Q44) MUTATED       13      5      3
  DEL PEAK  2(1Q44) WILD-TYPE     55     48     36
D9V8, multiclass
        clus
vv       DEL PEAK  2(1Q44) MUTATED DEL PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        13                          55
  CLUS_2                         5                          48
  CLUS_3                         3                          36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = DEL PEAK  3(2Q34) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q34) MUTATED        3      0      2      5      3
  DEL PEAK  3(2Q34) WILD-TYPE     12     24     53     38     20
D10V1, multiclass
        clus
vv       DEL PEAK  3(2Q34) MUTATED DEL PEAK  3(2Q34) WILD-TYPE
  CLUS_1                         3                          12
  CLUS_2                         0                          24
  CLUS_3                         2                          53
  CLUS_4                         5                          38
  CLUS_5                         3                          20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q34) MUTATED        5      6      2
  DEL PEAK  3(2Q34) WILD-TYPE     35     71     41
D10V2, multiclass
        clus
vv       DEL PEAK  3(2Q34) MUTATED DEL PEAK  3(2Q34) WILD-TYPE
  CLUS_1                         5                          35
  CLUS_2                         6                          71
  CLUS_3                         2                          41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q34) MUTATED        4      3      5      1
  DEL PEAK  3(2Q34) WILD-TYPE     29     60     38     20
D10V3, multiclass
        clus
vv       DEL PEAK  3(2Q34) MUTATED DEL PEAK  3(2Q34) WILD-TYPE
  CLUS_1                         4                          29
  CLUS_2                         3                          60
  CLUS_3                         5                          38
  CLUS_4                         1                          20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q34) MUTATED        2      4      7      0
  DEL PEAK  3(2Q34) WILD-TYPE     31     59     36     21
D10V4, multiclass
        clus
vv       DEL PEAK  3(2Q34) MUTATED DEL PEAK  3(2Q34) WILD-TYPE
  CLUS_1                         2                          31
  CLUS_2                         4                          59
  CLUS_3                         7                          36
  CLUS_4                         0                          21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q34) MUTATED        7      3      3
  DEL PEAK  3(2Q34) WILD-TYPE     57     54     36
D10V5, multiclass
        clus
vv       DEL PEAK  3(2Q34) MUTATED DEL PEAK  3(2Q34) WILD-TYPE
  CLUS_1                         7                          57
  CLUS_2                         3                          54
  CLUS_3                         3                          36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q34) MUTATED        9      1      1      2
  DEL PEAK  3(2Q34) WILD-TYPE     56     52     17     22
D10V6, multiclass
        clus
vv       DEL PEAK  3(2Q34) MUTATED DEL PEAK  3(2Q34) WILD-TYPE
  CLUS_1                         9                          56
  CLUS_2                         1                          52
  CLUS_3                         1                          17
  CLUS_4                         2                          22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q34) MUTATED        4      4      5
  DEL PEAK  3(2Q34) WILD-TYPE     33     62     52
D10V7, multiclass
        clus
vv       DEL PEAK  3(2Q34) MUTATED DEL PEAK  3(2Q34) WILD-TYPE
  CLUS_1                         4                          33
  CLUS_2                         4                          62
  CLUS_3                         5                          52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q34) MUTATED        8      2      3
  DEL PEAK  3(2Q34) WILD-TYPE     60     51     36
D10V8, multiclass
        clus
vv       DEL PEAK  3(2Q34) MUTATED DEL PEAK  3(2Q34) WILD-TYPE
  CLUS_1                         8                          60
  CLUS_2                         2                          51
  CLUS_3                         3                          36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = DEL PEAK  4(3P24.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(3P24.1) MUTATED        9      1     12     32      6
  DEL PEAK  4(3P24.1) WILD-TYPE      6     23     43     11     17
D11V1, multiclass
        clus
vv       DEL PEAK  4(3P24.1) MUTATED DEL PEAK  4(3P24.1) WILD-TYPE
  CLUS_1                           9                             6
  CLUS_2                           1                            23
  CLUS_3                          12                            43
  CLUS_4                          32                            11
  CLUS_5                           6                            17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P24.1) MUTATED       23     20     17
  DEL PEAK  4(3P24.1) WILD-TYPE     17     57     26
D11V2, multiclass
        clus
vv       DEL PEAK  4(3P24.1) MUTATED DEL PEAK  4(3P24.1) WILD-TYPE
  CLUS_1                          23                            17
  CLUS_2                          20                            57
  CLUS_3                          17                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P24.1) MUTATED       17     15     25      3
  DEL PEAK  4(3P24.1) WILD-TYPE     16     48     18     18
D11V3, multiclass
        clus
vv       DEL PEAK  4(3P24.1) MUTATED DEL PEAK  4(3P24.1) WILD-TYPE
  CLUS_1                          17                            16
  CLUS_2                          15                            48
  CLUS_3                          25                            18
  CLUS_4                           3                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P24.1) MUTATED       11     16     30      3
  DEL PEAK  4(3P24.1) WILD-TYPE     22     47     13     18
D11V4, multiclass
        clus
vv       DEL PEAK  4(3P24.1) MUTATED DEL PEAK  4(3P24.1) WILD-TYPE
  CLUS_1                          11                            22
  CLUS_2                          16                            47
  CLUS_3                          30                            13
  CLUS_4                           3                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P24.1) MUTATED       37     17      6
  DEL PEAK  4(3P24.1) WILD-TYPE     27     40     33
D11V5, multiclass
        clus
vv       DEL PEAK  4(3P24.1) MUTATED DEL PEAK  4(3P24.1) WILD-TYPE
  CLUS_1                          37                            27
  CLUS_2                          17                            40
  CLUS_3                           6                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P24.1) MUTATED       37     14      6      3
  DEL PEAK  4(3P24.1) WILD-TYPE     28     39     12     21
D11V6, multiclass
        clus
vv       DEL PEAK  4(3P24.1) MUTATED DEL PEAK  4(3P24.1) WILD-TYPE
  CLUS_1                          37                            28
  CLUS_2                          14                            39
  CLUS_3                           6                            12
  CLUS_4                           3                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P24.1) MUTATED       25     16     19
  DEL PEAK  4(3P24.1) WILD-TYPE     12     50     38
D11V7, multiclass
        clus
vv       DEL PEAK  4(3P24.1) MUTATED DEL PEAK  4(3P24.1) WILD-TYPE
  CLUS_1                          25                            12
  CLUS_2                          16                            50
  CLUS_3                          19                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P24.1) MUTATED       37     14      9
  DEL PEAK  4(3P24.1) WILD-TYPE     31     39     30
D11V8, multiclass
        clus
vv       DEL PEAK  4(3P24.1) MUTATED DEL PEAK  4(3P24.1) WILD-TYPE
  CLUS_1                          37                            31
  CLUS_2                          14                            39
  CLUS_3                           9                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = DEL PEAK  5(3Q26.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3Q26.1) MUTATED        8      0     38     33     14
  DEL PEAK  5(3Q26.1) WILD-TYPE      7     24     17     10      9
D12V1, multiclass
        clus
vv       DEL PEAK  5(3Q26.1) MUTATED DEL PEAK  5(3Q26.1) WILD-TYPE
  CLUS_1                           8                             7
  CLUS_2                           0                            24
  CLUS_3                          38                            17
  CLUS_4                          33                            10
  CLUS_5                          14                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3Q26.1) MUTATED       24     47     22
  DEL PEAK  5(3Q26.1) WILD-TYPE     16     30     21
D12V2, multiclass
        clus
vv       DEL PEAK  5(3Q26.1) MUTATED DEL PEAK  5(3Q26.1) WILD-TYPE
  CLUS_1                          24                            16
  CLUS_2                          47                            30
  CLUS_3                          22                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3Q26.1) MUTATED       20     44     22      7
  DEL PEAK  5(3Q26.1) WILD-TYPE     13     19     21     14
D12V3, multiclass
        clus
vv       DEL PEAK  5(3Q26.1) MUTATED DEL PEAK  5(3Q26.1) WILD-TYPE
  CLUS_1                          20                            13
  CLUS_2                          44                            19
  CLUS_3                          22                            21
  CLUS_4                           7                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3Q26.1) MUTATED        6     47     33      7
  DEL PEAK  5(3Q26.1) WILD-TYPE     27     16     10     14
D12V4, multiclass
        clus
vv       DEL PEAK  5(3Q26.1) MUTATED DEL PEAK  5(3Q26.1) WILD-TYPE
  CLUS_1                           6                            27
  CLUS_2                          47                            16
  CLUS_3                          33                            10
  CLUS_4                           7                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3Q26.1) MUTATED       39     39     15
  DEL PEAK  5(3Q26.1) WILD-TYPE     25     18     24
D12V5, multiclass
        clus
vv       DEL PEAK  5(3Q26.1) MUTATED DEL PEAK  5(3Q26.1) WILD-TYPE
  CLUS_1                          39                            25
  CLUS_2                          39                            18
  CLUS_3                          15                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3Q26.1) MUTATED       39     38      5     11
  DEL PEAK  5(3Q26.1) WILD-TYPE     26     15     13     13
D12V6, multiclass
        clus
vv       DEL PEAK  5(3Q26.1) MUTATED DEL PEAK  5(3Q26.1) WILD-TYPE
  CLUS_1                          39                            26
  CLUS_2                          38                            15
  CLUS_3                           5                            13
  CLUS_4                          11                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3Q26.1) MUTATED       22     44     27
  DEL PEAK  5(3Q26.1) WILD-TYPE     15     22     30
D12V7, multiclass
        clus
vv       DEL PEAK  5(3Q26.1) MUTATED DEL PEAK  5(3Q26.1) WILD-TYPE
  CLUS_1                          22                            15
  CLUS_2                          44                            22
  CLUS_3                          27                            30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3Q26.1) MUTATED       39     39     15
  DEL PEAK  5(3Q26.1) WILD-TYPE     29     14     24
D12V8, multiclass
        clus
vv       DEL PEAK  5(3Q26.1) MUTATED DEL PEAK  5(3Q26.1) WILD-TYPE
  CLUS_1                          39                            29
  CLUS_2                          39                            14
  CLUS_3                          15                            24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = DEL PEAK  6(4Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4Q22.1) MUTATED        2      2      2      9      0
  DEL PEAK  6(4Q22.1) WILD-TYPE     13     22     53     34     23
D13V1, multiclass
        clus
vv       DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE
  CLUS_1                           2                            13
  CLUS_2                           2                            22
  CLUS_3                           2                            53
  CLUS_4                           9                            34
  CLUS_5                           0                            23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q22.1) MUTATED        2      6      7
  DEL PEAK  6(4Q22.1) WILD-TYPE     38     71     36
D13V2, multiclass
        clus
vv       DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE
  CLUS_1                           2                            38
  CLUS_2                           6                            71
  CLUS_3                           7                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q22.1) MUTATED        1      3     10      1
  DEL PEAK  6(4Q22.1) WILD-TYPE     32     60     33     20
D13V3, multiclass
        clus
vv       DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE
  CLUS_1                           1                            32
  CLUS_2                           3                            60
  CLUS_3                          10                            33
  CLUS_4                           1                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q22.1) MUTATED        3      4      8      0
  DEL PEAK  6(4Q22.1) WILD-TYPE     30     59     35     21
D13V4, multiclass
        clus
vv       DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE
  CLUS_1                           3                            30
  CLUS_2                           4                            59
  CLUS_3                           8                            35
  CLUS_4                           0                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q22.1) MUTATED        9      2      4
  DEL PEAK  6(4Q22.1) WILD-TYPE     55     55     35
D13V5, multiclass
        clus
vv       DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE
  CLUS_1                           9                            55
  CLUS_2                           2                            55
  CLUS_3                           4                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q22.1) MUTATED        9      2      2      2
  DEL PEAK  6(4Q22.1) WILD-TYPE     56     51     16     22
D13V6, multiclass
        clus
vv       DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE
  CLUS_1                           9                            56
  CLUS_2                           2                            51
  CLUS_3                           2                            16
  CLUS_4                           2                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q22.1) MUTATED        6      3      6
  DEL PEAK  6(4Q22.1) WILD-TYPE     31     63     51
D13V7, multiclass
        clus
vv       DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE
  CLUS_1                           6                            31
  CLUS_2                           3                            63
  CLUS_3                           6                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q22.1) MUTATED        9      2      4
  DEL PEAK  6(4Q22.1) WILD-TYPE     59     51     35
D13V8, multiclass
        clus
vv       DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE
  CLUS_1                           9                            59
  CLUS_2                           2                            51
  CLUS_3                           4                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = DEL PEAK  7(4Q35.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(4Q35.2) MUTATED        1      0      4     11      0
  DEL PEAK  7(4Q35.2) WILD-TYPE     14     24     51     32     23
D14V1, multiclass
        clus
vv       DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE
  CLUS_1                           1                            14
  CLUS_2                           0                            24
  CLUS_3                           4                            51
  CLUS_4                          11                            32
  CLUS_5                           0                            23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q35.2) MUTATED        2      9      5
  DEL PEAK  7(4Q35.2) WILD-TYPE     38     68     38
D14V2, multiclass
        clus
vv       DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE
  CLUS_1                           2                            38
  CLUS_2                           9                            68
  CLUS_3                           5                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q35.2) MUTATED        2      5      8      1
  DEL PEAK  7(4Q35.2) WILD-TYPE     31     58     35     20
D14V3, multiclass
        clus
vv       DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE
  CLUS_1                           2                            31
  CLUS_2                           5                            58
  CLUS_3                           8                            35
  CLUS_4                           1                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q35.2) MUTATED        3      7      6      0
  DEL PEAK  7(4Q35.2) WILD-TYPE     30     56     37     21
D14V4, multiclass
        clus
vv       DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE
  CLUS_1                           3                            30
  CLUS_2                           7                            56
  CLUS_3                           6                            37
  CLUS_4                           0                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q35.2) MUTATED        8      5      3
  DEL PEAK  7(4Q35.2) WILD-TYPE     56     52     36
D14V5, multiclass
        clus
vv       DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE
  CLUS_1                           8                            56
  CLUS_2                           5                            52
  CLUS_3                           3                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(4Q35.2) MUTATED        9      5      1      1
  DEL PEAK  7(4Q35.2) WILD-TYPE     56     48     17     23
D14V6, multiclass
        clus
vv       DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE
  CLUS_1                           9                            56
  CLUS_2                           5                            48
  CLUS_3                           1                            17
  CLUS_4                           1                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q35.2) MUTATED        5      7      4
  DEL PEAK  7(4Q35.2) WILD-TYPE     32     59     53
D14V7, multiclass
        clus
vv       DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE
  CLUS_1                           5                            32
  CLUS_2                           7                            59
  CLUS_3                           4                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(4Q35.2) MUTATED        8      6      2
  DEL PEAK  7(4Q35.2) WILD-TYPE     60     47     37
D14V8, multiclass
        clus
vv       DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE
  CLUS_1                           8                            60
  CLUS_2                           6                            47
  CLUS_3                           2                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = DEL PEAK  8(5Q15) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(5Q15) MUTATED        1      0      3      6      2
  DEL PEAK  8(5Q15) WILD-TYPE     14     24     52     37     21
D15V1, multiclass
        clus
vv       DEL PEAK  8(5Q15) MUTATED DEL PEAK  8(5Q15) WILD-TYPE
  CLUS_1                         1                          14
  CLUS_2                         0                          24
  CLUS_3                         3                          52
  CLUS_4                         6                          37
  CLUS_5                         2                          21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q15) MUTATED        3      6      3
  DEL PEAK  8(5Q15) WILD-TYPE     37     71     40
D15V2, multiclass
        clus
vv       DEL PEAK  8(5Q15) MUTATED DEL PEAK  8(5Q15) WILD-TYPE
  CLUS_1                         3                          37
  CLUS_2                         6                          71
  CLUS_3                         3                          40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5Q15) MUTATED        2      5      4      1
  DEL PEAK  8(5Q15) WILD-TYPE     31     58     39     20
D15V3, multiclass
        clus
vv       DEL PEAK  8(5Q15) MUTATED DEL PEAK  8(5Q15) WILD-TYPE
  CLUS_1                         2                          31
  CLUS_2                         5                          58
  CLUS_3                         4                          39
  CLUS_4                         1                          20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5Q15) MUTATED        3      5      3      1
  DEL PEAK  8(5Q15) WILD-TYPE     30     58     40     20
D15V4, multiclass
        clus
vv       DEL PEAK  8(5Q15) MUTATED DEL PEAK  8(5Q15) WILD-TYPE
  CLUS_1                         3                          30
  CLUS_2                         5                          58
  CLUS_3                         3                          40
  CLUS_4                         1                          20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q15) MUTATED        4      5      3
  DEL PEAK  8(5Q15) WILD-TYPE     60     52     36
D15V5, multiclass
        clus
vv       DEL PEAK  8(5Q15) MUTATED DEL PEAK  8(5Q15) WILD-TYPE
  CLUS_1                         4                          60
  CLUS_2                         5                          52
  CLUS_3                         3                          36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5Q15) MUTATED        4      5      3      0
  DEL PEAK  8(5Q15) WILD-TYPE     61     48     15     24
D15V6, multiclass
        clus
vv       DEL PEAK  8(5Q15) MUTATED DEL PEAK  8(5Q15) WILD-TYPE
  CLUS_1                         4                          61
  CLUS_2                         5                          48
  CLUS_3                         3                          15
  CLUS_4                         0                          24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q15) MUTATED        2      6      4
  DEL PEAK  8(5Q15) WILD-TYPE     35     60     53
D15V7, multiclass
        clus
vv       DEL PEAK  8(5Q15) MUTATED DEL PEAK  8(5Q15) WILD-TYPE
  CLUS_1                         2                          35
  CLUS_2                         6                          60
  CLUS_3                         4                          53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q15) MUTATED        4      5      3
  DEL PEAK  8(5Q15) WILD-TYPE     64     48     36
D15V8, multiclass
        clus
vv       DEL PEAK  8(5Q15) MUTATED DEL PEAK  8(5Q15) WILD-TYPE
  CLUS_1                         4                          64
  CLUS_2                         5                          48
  CLUS_3                         3                          36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = DEL PEAK  9(6P12.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(6P12.3) MUTATED        2      3      1      3      1
  DEL PEAK  9(6P12.3) WILD-TYPE     13     21     54     40     22
D16V1, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           2                            13
  CLUS_2                           3                            21
  CLUS_3                           1                            54
  CLUS_4                           3                            40
  CLUS_5                           1                            22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P12.3) MUTATED        2      3      5
  DEL PEAK  9(6P12.3) WILD-TYPE     38     74     38
D16V2, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           2                            38
  CLUS_2                           3                            74
  CLUS_3                           5                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6P12.3) MUTATED        1      1      4      4
  DEL PEAK  9(6P12.3) WILD-TYPE     32     62     39     17
D16V3, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           1                            32
  CLUS_2                           1                            62
  CLUS_3                           4                            39
  CLUS_4                           4                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6P12.3) MUTATED        2      2      2      4
  DEL PEAK  9(6P12.3) WILD-TYPE     31     61     41     17
D16V4, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           2                            31
  CLUS_2                           2                            61
  CLUS_3                           2                            41
  CLUS_4                           4                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P12.3) MUTATED        3      2      5
  DEL PEAK  9(6P12.3) WILD-TYPE     61     55     34
D16V5, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           3                            61
  CLUS_2                           2                            55
  CLUS_3                           5                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(6P12.3) MUTATED        3      2      1      4
  DEL PEAK  9(6P12.3) WILD-TYPE     62     51     17     20
D16V6, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           3                            62
  CLUS_2                           2                            51
  CLUS_3                           1                            17
  CLUS_4                           4                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P12.3) MUTATED        3      3      4
  DEL PEAK  9(6P12.3) WILD-TYPE     34     63     53
D16V7, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           3                            34
  CLUS_2                           3                            63
  CLUS_3                           4                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(6P12.3) MUTATED        3      2      5
  DEL PEAK  9(6P12.3) WILD-TYPE     65     51     34
D16V8, multiclass
        clus
vv       DEL PEAK  9(6P12.3) MUTATED DEL PEAK  9(6P12.3) WILD-TYPE
  CLUS_1                           3                            65
  CLUS_2                           2                            51
  CLUS_3                           5                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = DEL PEAK 10(6Q16.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(6Q16.1) MUTATED        1      3     13      5      2
  DEL PEAK 10(6Q16.1) WILD-TYPE     14     21     42     38     21
D17V1, multiclass
        clus
vv       DEL PEAK 10(6Q16.1) MUTATED DEL PEAK 10(6Q16.1) WILD-TYPE
  CLUS_1                           1                            14
  CLUS_2                           3                            21
  CLUS_3                          13                            42
  CLUS_4                           5                            38
  CLUS_5                           2                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q16.1) MUTATED        2     16      6
  DEL PEAK 10(6Q16.1) WILD-TYPE     38     61     37
D17V2, multiclass
        clus
vv       DEL PEAK 10(6Q16.1) MUTATED DEL PEAK 10(6Q16.1) WILD-TYPE
  CLUS_1                           2                            38
  CLUS_2                          16                            61
  CLUS_3                           6                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6Q16.1) MUTATED        1     15      4      4
  DEL PEAK 10(6Q16.1) WILD-TYPE     32     48     39     17
D17V3, multiclass
        clus
vv       DEL PEAK 10(6Q16.1) MUTATED DEL PEAK 10(6Q16.1) WILD-TYPE
  CLUS_1                           1                            32
  CLUS_2                          15                            48
  CLUS_3                           4                            39
  CLUS_4                           4                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6Q16.1) MUTATED        1     16      3      4
  DEL PEAK 10(6Q16.1) WILD-TYPE     32     47     40     17
D17V4, multiclass
        clus
vv       DEL PEAK 10(6Q16.1) MUTATED DEL PEAK 10(6Q16.1) WILD-TYPE
  CLUS_1                           1                            32
  CLUS_2                          16                            47
  CLUS_3                           3                            40
  CLUS_4                           4                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q16.1) MUTATED        4     14      6
  DEL PEAK 10(6Q16.1) WILD-TYPE     60     43     33
D17V5, multiclass
        clus
vv       DEL PEAK 10(6Q16.1) MUTATED DEL PEAK 10(6Q16.1) WILD-TYPE
  CLUS_1                           4                            60
  CLUS_2                          14                            43
  CLUS_3                           6                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6Q16.1) MUTATED        4     15      1      4
  DEL PEAK 10(6Q16.1) WILD-TYPE     61     38     17     20
D17V6, multiclass
        clus
vv       DEL PEAK 10(6Q16.1) MUTATED DEL PEAK 10(6Q16.1) WILD-TYPE
  CLUS_1                           4                            61
  CLUS_2                          15                            38
  CLUS_3                           1                            17
  CLUS_4                           4                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q16.1) MUTATED        4     17      3
  DEL PEAK 10(6Q16.1) WILD-TYPE     33     49     54
D17V7, multiclass
        clus
vv       DEL PEAK 10(6Q16.1) MUTATED DEL PEAK 10(6Q16.1) WILD-TYPE
  CLUS_1                           4                            33
  CLUS_2                          17                            49
  CLUS_3                           3                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q16.1) MUTATED        4     15      5
  DEL PEAK 10(6Q16.1) WILD-TYPE     64     38     34
D17V8, multiclass
        clus
vv       DEL PEAK 10(6Q16.1) MUTATED DEL PEAK 10(6Q16.1) WILD-TYPE
  CLUS_1                           4                            64
  CLUS_2                          15                            38
  CLUS_3                           5                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = DEL PEAK 11(7Q33) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(7Q33) MUTATED        0      0      7      0      1
  DEL PEAK 11(7Q33) WILD-TYPE     15     24     48     43     22
D18V1, multiclass
        clus
vv       DEL PEAK 11(7Q33) MUTATED DEL PEAK 11(7Q33) WILD-TYPE
  CLUS_1                         0                          15
  CLUS_2                         0                          24
  CLUS_3                         7                          48
  CLUS_4                         0                          43
  CLUS_5                         1                          22
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(7Q33) MUTATED        0      5      3
  DEL PEAK 11(7Q33) WILD-TYPE     40     72     40
D18V2, multiclass
        clus
vv       DEL PEAK 11(7Q33) MUTATED DEL PEAK 11(7Q33) WILD-TYPE
  CLUS_1                         0                          40
  CLUS_2                         5                          72
  CLUS_3                         3                          40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(7Q33) MUTATED        0      8      0      0
  DEL PEAK 11(7Q33) WILD-TYPE     33     55     43     21
D18V3, multiclass
        clus
vv       DEL PEAK 11(7Q33) MUTATED DEL PEAK 11(7Q33) WILD-TYPE
  CLUS_1                         0                          33
  CLUS_2                         8                          55
  CLUS_3                         0                          43
  CLUS_4                         0                          21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(7Q33) MUTATED        1      7      0      0
  DEL PEAK 11(7Q33) WILD-TYPE     32     56     43     21
D18V4, multiclass
        clus
vv       DEL PEAK 11(7Q33) MUTATED DEL PEAK 11(7Q33) WILD-TYPE
  CLUS_1                         1                          32
  CLUS_2                         7                          56
  CLUS_3                         0                          43
  CLUS_4                         0                          21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(7Q33) MUTATED        0      6      2
  DEL PEAK 11(7Q33) WILD-TYPE     64     51     37
D18V5, multiclass
        clus
vv       DEL PEAK 11(7Q33) MUTATED DEL PEAK 11(7Q33) WILD-TYPE
  CLUS_1                         0                          64
  CLUS_2                         6                          51
  CLUS_3                         2                          37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(7Q33) MUTATED        0      6      2      0
  DEL PEAK 11(7Q33) WILD-TYPE     65     47     16     24
D18V6, multiclass
        clus
vv       DEL PEAK 11(7Q33) MUTATED DEL PEAK 11(7Q33) WILD-TYPE
  CLUS_1                         0                          65
  CLUS_2                         6                          47
  CLUS_3                         2                          16
  CLUS_4                         0                          24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(7Q33) MUTATED        1      5      2
  DEL PEAK 11(7Q33) WILD-TYPE     36     61     55
D18V7, multiclass
        clus
vv       DEL PEAK 11(7Q33) MUTATED DEL PEAK 11(7Q33) WILD-TYPE
  CLUS_1                         1                          36
  CLUS_2                         5                          61
  CLUS_3                         2                          55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(7Q33) MUTATED        0      6      2
  DEL PEAK 11(7Q33) WILD-TYPE     68     47     37
D18V8, multiclass
        clus
vv       DEL PEAK 11(7Q33) MUTATED DEL PEAK 11(7Q33) WILD-TYPE
  CLUS_1                         0                          68
  CLUS_2                         6                          47
  CLUS_3                         2                          37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = DEL PEAK 12(8P22) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(8P22) MUTATED        4      0     11      7      2
  DEL PEAK 12(8P22) WILD-TYPE     11     24     44     36     21
D19V1, multiclass
        clus
vv       DEL PEAK 12(8P22) MUTATED DEL PEAK 12(8P22) WILD-TYPE
  CLUS_1                         4                          11
  CLUS_2                         0                          24
  CLUS_3                        11                          44
  CLUS_4                         7                          36
  CLUS_5                         2                          21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8P22) MUTATED        5     16      3
  DEL PEAK 12(8P22) WILD-TYPE     35     61     40
D19V2, multiclass
        clus
vv       DEL PEAK 12(8P22) MUTATED DEL PEAK 12(8P22) WILD-TYPE
  CLUS_1                         5                          35
  CLUS_2                        16                          61
  CLUS_3                         3                          40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(8P22) MUTATED        3     18      2      1
  DEL PEAK 12(8P22) WILD-TYPE     30     45     41     20
D19V3, multiclass
        clus
vv       DEL PEAK 12(8P22) MUTATED DEL PEAK 12(8P22) WILD-TYPE
  CLUS_1                         3                          30
  CLUS_2                        18                          45
  CLUS_3                         2                          41
  CLUS_4                         1                          20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(8P22) MUTATED        4     17      2      1
  DEL PEAK 12(8P22) WILD-TYPE     29     46     41     20
D19V4, multiclass
        clus
vv       DEL PEAK 12(8P22) MUTATED DEL PEAK 12(8P22) WILD-TYPE
  CLUS_1                         4                          29
  CLUS_2                        17                          46
  CLUS_3                         2                          41
  CLUS_4                         1                          20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8P22) MUTATED        7     13      4
  DEL PEAK 12(8P22) WILD-TYPE     57     44     35
D19V5, multiclass
        clus
vv       DEL PEAK 12(8P22) MUTATED DEL PEAK 12(8P22) WILD-TYPE
  CLUS_1                         7                          57
  CLUS_2                        13                          44
  CLUS_3                         4                          35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(8P22) MUTATED        7     13      2      2
  DEL PEAK 12(8P22) WILD-TYPE     58     40     16     22
D19V6, multiclass
        clus
vv       DEL PEAK 12(8P22) MUTATED DEL PEAK 12(8P22) WILD-TYPE
  CLUS_1                         7                          58
  CLUS_2                        13                          40
  CLUS_3                         2                          16
  CLUS_4                         2                          22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8P22) MUTATED        4     16      4
  DEL PEAK 12(8P22) WILD-TYPE     33     50     53
D19V7, multiclass
        clus
vv       DEL PEAK 12(8P22) MUTATED DEL PEAK 12(8P22) WILD-TYPE
  CLUS_1                         4                          33
  CLUS_2                        16                          50
  CLUS_3                         4                          53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8P22) MUTATED        8     12      4
  DEL PEAK 12(8P22) WILD-TYPE     60     41     35
D19V8, multiclass
        clus
vv       DEL PEAK 12(8P22) MUTATED DEL PEAK 12(8P22) WILD-TYPE
  CLUS_1                         8                          60
  CLUS_2                        12                          41
  CLUS_3                         4                          35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = DEL PEAK 13(9P24.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(9P24.2) MUTATED        2      1      7      2      3
  DEL PEAK 13(9P24.2) WILD-TYPE     13     23     48     41     20
D20V1, multiclass
        clus
vv       DEL PEAK 13(9P24.2) MUTATED DEL PEAK 13(9P24.2) WILD-TYPE
  CLUS_1                           2                            13
  CLUS_2                           1                            23
  CLUS_3                           7                            48
  CLUS_4                           2                            41
  CLUS_5                           3                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9P24.2) MUTATED        2     10      3
  DEL PEAK 13(9P24.2) WILD-TYPE     38     67     40
D20V2, multiclass
        clus
vv       DEL PEAK 13(9P24.2) MUTATED DEL PEAK 13(9P24.2) WILD-TYPE
  CLUS_1                           2                            38
  CLUS_2                          10                            67
  CLUS_3                           3                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(9P24.2) MUTATED        1     10      4      0
  DEL PEAK 13(9P24.2) WILD-TYPE     32     53     39     21
D20V3, multiclass
        clus
vv       DEL PEAK 13(9P24.2) MUTATED DEL PEAK 13(9P24.2) WILD-TYPE
  CLUS_1                           1                            32
  CLUS_2                          10                            53
  CLUS_3                           4                            39
  CLUS_4                           0                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(9P24.2) MUTATED        4      9      2      0
  DEL PEAK 13(9P24.2) WILD-TYPE     29     54     41     21
D20V4, multiclass
        clus
vv       DEL PEAK 13(9P24.2) MUTATED DEL PEAK 13(9P24.2) WILD-TYPE
  CLUS_1                           4                            29
  CLUS_2                           9                            54
  CLUS_3                           2                            41
  CLUS_4                           0                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9P24.2) MUTATED        4      7      4
  DEL PEAK 13(9P24.2) WILD-TYPE     60     50     35
D20V5, multiclass
        clus
vv       DEL PEAK 13(9P24.2) MUTATED DEL PEAK 13(9P24.2) WILD-TYPE
  CLUS_1                           4                            60
  CLUS_2                           7                            50
  CLUS_3                           4                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(9P24.2) MUTATED        4      8      3      0
  DEL PEAK 13(9P24.2) WILD-TYPE     61     45     15     24
D20V6, multiclass
        clus
vv       DEL PEAK 13(9P24.2) MUTATED DEL PEAK 13(9P24.2) WILD-TYPE
  CLUS_1                           4                            61
  CLUS_2                           8                            45
  CLUS_3                           3                            15
  CLUS_4                           0                            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9P24.2) MUTATED        2      9      4
  DEL PEAK 13(9P24.2) WILD-TYPE     35     57     53
D20V7, multiclass
        clus
vv       DEL PEAK 13(9P24.2) MUTATED DEL PEAK 13(9P24.2) WILD-TYPE
  CLUS_1                           2                            35
  CLUS_2                           9                            57
  CLUS_3                           4                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9P24.2) MUTATED        5      7      3
  DEL PEAK 13(9P24.2) WILD-TYPE     63     46     36
D20V8, multiclass
        clus
vv       DEL PEAK 13(9P24.2) MUTATED DEL PEAK 13(9P24.2) WILD-TYPE
  CLUS_1                           5                            63
  CLUS_2                           7                            46
  CLUS_3                           3                            36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = DEL PEAK 14(9Q21.12) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(9Q21.12) MUTATED        3      1      4      4      2
  DEL PEAK 14(9Q21.12) WILD-TYPE     12     23     51     39     21
D21V1, multiclass
        clus
vv       DEL PEAK 14(9Q21.12) MUTATED DEL PEAK 14(9Q21.12) WILD-TYPE
  CLUS_1                            3                             12
  CLUS_2                            1                             23
  CLUS_3                            4                             51
  CLUS_4                            4                             39
  CLUS_5                            2                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9Q21.12) MUTATED        4      8      2
  DEL PEAK 14(9Q21.12) WILD-TYPE     36     69     41
D21V2, multiclass
        clus
vv       DEL PEAK 14(9Q21.12) MUTATED DEL PEAK 14(9Q21.12) WILD-TYPE
  CLUS_1                            4                             36
  CLUS_2                            8                             69
  CLUS_3                            2                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9Q21.12) MUTATED        3      8      3      0
  DEL PEAK 14(9Q21.12) WILD-TYPE     30     55     40     21
D21V3, multiclass
        clus
vv       DEL PEAK 14(9Q21.12) MUTATED DEL PEAK 14(9Q21.12) WILD-TYPE
  CLUS_1                            3                             30
  CLUS_2                            8                             55
  CLUS_3                            3                             40
  CLUS_4                            0                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9Q21.12) MUTATED        3      8      3      0
  DEL PEAK 14(9Q21.12) WILD-TYPE     30     55     40     21
D21V4, multiclass
        clus
vv       DEL PEAK 14(9Q21.12) MUTATED DEL PEAK 14(9Q21.12) WILD-TYPE
  CLUS_1                            3                             30
  CLUS_2                            8                             55
  CLUS_3                            3                             40
  CLUS_4                            0                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9Q21.12) MUTATED        6      6      2
  DEL PEAK 14(9Q21.12) WILD-TYPE     58     51     37
D21V5, multiclass
        clus
vv       DEL PEAK 14(9Q21.12) MUTATED DEL PEAK 14(9Q21.12) WILD-TYPE
  CLUS_1                            6                             58
  CLUS_2                            6                             51
  CLUS_3                            2                             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9Q21.12) MUTATED        4      7      3      0
  DEL PEAK 14(9Q21.12) WILD-TYPE     61     46     15     24
D21V6, multiclass
        clus
vv       DEL PEAK 14(9Q21.12) MUTATED DEL PEAK 14(9Q21.12) WILD-TYPE
  CLUS_1                            4                             61
  CLUS_2                            7                             46
  CLUS_3                            3                             15
  CLUS_4                            0                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9Q21.12) MUTATED        3      7      4
  DEL PEAK 14(9Q21.12) WILD-TYPE     34     59     53
D21V7, multiclass
        clus
vv       DEL PEAK 14(9Q21.12) MUTATED DEL PEAK 14(9Q21.12) WILD-TYPE
  CLUS_1                            3                             34
  CLUS_2                            7                             59
  CLUS_3                            4                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9Q21.12) MUTATED        6      5      3
  DEL PEAK 14(9Q21.12) WILD-TYPE     62     48     36
D21V8, multiclass
        clus
vv       DEL PEAK 14(9Q21.12) MUTATED DEL PEAK 14(9Q21.12) WILD-TYPE
  CLUS_1                            6                             62
  CLUS_2                            5                             48
  CLUS_3                            3                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = DEL PEAK 15(11P15.4) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(11P15.4) MUTATED        5      5      0     36     11
  DEL PEAK 15(11P15.4) WILD-TYPE     10     19     55      7     12
D22V1, multiclass
        clus
vv       DEL PEAK 15(11P15.4) MUTATED DEL PEAK 15(11P15.4) WILD-TYPE
  CLUS_1                            5                             10
  CLUS_2                            5                             19
  CLUS_3                            0                             55
  CLUS_4                           36                              7
  CLUS_5                           11                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(11P15.4) MUTATED       23     14     20
  DEL PEAK 15(11P15.4) WILD-TYPE     17     63     23
D22V2, multiclass
        clus
vv       DEL PEAK 15(11P15.4) MUTATED DEL PEAK 15(11P15.4) WILD-TYPE
  CLUS_1                           23                             17
  CLUS_2                           14                             63
  CLUS_3                           20                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(11P15.4) MUTATED       13     12     26      6
  DEL PEAK 15(11P15.4) WILD-TYPE     20     51     17     15
D22V3, multiclass
        clus
vv       DEL PEAK 15(11P15.4) MUTATED DEL PEAK 15(11P15.4) WILD-TYPE
  CLUS_1                           13                             20
  CLUS_2                           12                             51
  CLUS_3                           26                             17
  CLUS_4                            6                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(11P15.4) MUTATED       11      9     31      6
  DEL PEAK 15(11P15.4) WILD-TYPE     22     54     12     15
D22V4, multiclass
        clus
vv       DEL PEAK 15(11P15.4) MUTATED DEL PEAK 15(11P15.4) WILD-TYPE
  CLUS_1                           11                             22
  CLUS_2                            9                             54
  CLUS_3                           31                             12
  CLUS_4                            6                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(11P15.4) MUTATED       36     11     10
  DEL PEAK 15(11P15.4) WILD-TYPE     28     46     29
D22V5, multiclass
        clus
vv       DEL PEAK 15(11P15.4) MUTATED DEL PEAK 15(11P15.4) WILD-TYPE
  CLUS_1                           36                             28
  CLUS_2                           11                             46
  CLUS_3                           10                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(11P15.4) MUTATED       39      7      5      6
  DEL PEAK 15(11P15.4) WILD-TYPE     26     46     13     18
D22V6, multiclass
        clus
vv       DEL PEAK 15(11P15.4) MUTATED DEL PEAK 15(11P15.4) WILD-TYPE
  CLUS_1                           39                             26
  CLUS_2                            7                             46
  CLUS_3                            5                             13
  CLUS_4                            6                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(11P15.4) MUTATED       26     13     18
  DEL PEAK 15(11P15.4) WILD-TYPE     11     53     39
D22V7, multiclass
        clus
vv       DEL PEAK 15(11P15.4) MUTATED DEL PEAK 15(11P15.4) WILD-TYPE
  CLUS_1                           26                             11
  CLUS_2                           13                             53
  CLUS_3                           18                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(11P15.4) MUTATED       38      9     10
  DEL PEAK 15(11P15.4) WILD-TYPE     30     44     29
D22V8, multiclass
        clus
vv       DEL PEAK 15(11P15.4) MUTATED DEL PEAK 15(11P15.4) WILD-TYPE
  CLUS_1                           38                             30
  CLUS_2                            9                             44
  CLUS_3                           10                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = DEL PEAK 16(11Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(11Q22.1) MUTATED        3      3      3     33      2
  DEL PEAK 16(11Q22.1) WILD-TYPE     12     21     52     10     21
D23V1, multiclass
        clus
vv       DEL PEAK 16(11Q22.1) MUTATED DEL PEAK 16(11Q22.1) WILD-TYPE
  CLUS_1                            3                             12
  CLUS_2                            3                             21
  CLUS_3                            3                             52
  CLUS_4                           33                             10
  CLUS_5                            2                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(11Q22.1) MUTATED       15     17     12
  DEL PEAK 16(11Q22.1) WILD-TYPE     25     60     31
D23V2, multiclass
        clus
vv       DEL PEAK 16(11Q22.1) MUTATED DEL PEAK 16(11Q22.1) WILD-TYPE
  CLUS_1                           15                             25
  CLUS_2                           17                             60
  CLUS_3                           12                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(11Q22.1) MUTATED        8     10     21      5
  DEL PEAK 16(11Q22.1) WILD-TYPE     25     53     22     16
D23V3, multiclass
        clus
vv       DEL PEAK 16(11Q22.1) MUTATED DEL PEAK 16(11Q22.1) WILD-TYPE
  CLUS_1                            8                             25
  CLUS_2                           10                             53
  CLUS_3                           21                             22
  CLUS_4                            5                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(11Q22.1) MUTATED        8     11     21      4
  DEL PEAK 16(11Q22.1) WILD-TYPE     25     52     22     17
D23V4, multiclass
        clus
vv       DEL PEAK 16(11Q22.1) MUTATED DEL PEAK 16(11Q22.1) WILD-TYPE
  CLUS_1                            8                             25
  CLUS_2                           11                             52
  CLUS_3                           21                             22
  CLUS_4                            4                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(11Q22.1) MUTATED       26      8     10
  DEL PEAK 16(11Q22.1) WILD-TYPE     38     49     29
D23V5, multiclass
        clus
vv       DEL PEAK 16(11Q22.1) MUTATED DEL PEAK 16(11Q22.1) WILD-TYPE
  CLUS_1                           26                             38
  CLUS_2                            8                             49
  CLUS_3                           10                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(11Q22.1) MUTATED       28      7      2      7
  DEL PEAK 16(11Q22.1) WILD-TYPE     37     46     16     17
D23V6, multiclass
        clus
vv       DEL PEAK 16(11Q22.1) MUTATED DEL PEAK 16(11Q22.1) WILD-TYPE
  CLUS_1                           28                             37
  CLUS_2                            7                             46
  CLUS_3                            2                             16
  CLUS_4                            7                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(11Q22.1) MUTATED       19     12     13
  DEL PEAK 16(11Q22.1) WILD-TYPE     18     54     44
D23V7, multiclass
        clus
vv       DEL PEAK 16(11Q22.1) MUTATED DEL PEAK 16(11Q22.1) WILD-TYPE
  CLUS_1                           19                             18
  CLUS_2                           12                             54
  CLUS_3                           13                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(11Q22.1) MUTATED       28      8      8
  DEL PEAK 16(11Q22.1) WILD-TYPE     40     45     31
D23V8, multiclass
        clus
vv       DEL PEAK 16(11Q22.1) MUTATED DEL PEAK 16(11Q22.1) WILD-TYPE
  CLUS_1                           28                             40
  CLUS_2                            8                             45
  CLUS_3                            8                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = DEL PEAK 17(12Q21.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(12Q21.33) MUTATED        2      2      2      2      0
  DEL PEAK 17(12Q21.33) WILD-TYPE     13     22     53     41     23
D24V1, multiclass
        clus
vv       DEL PEAK 17(12Q21.33) MUTATED DEL PEAK 17(12Q21.33) WILD-TYPE
  CLUS_1                             2                              13
  CLUS_2                             2                              22
  CLUS_3                             2                              53
  CLUS_4                             2                              41
  CLUS_5                             0                              23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(12Q21.33) MUTATED        1      5      2
  DEL PEAK 17(12Q21.33) WILD-TYPE     39     72     41
D24V2, multiclass
        clus
vv       DEL PEAK 17(12Q21.33) MUTATED DEL PEAK 17(12Q21.33) WILD-TYPE
  CLUS_1                             1                              39
  CLUS_2                             5                              72
  CLUS_3                             2                              41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(12Q21.33) MUTATED        1      3      3      1
  DEL PEAK 17(12Q21.33) WILD-TYPE     32     60     40     20
D24V3, multiclass
        clus
vv       DEL PEAK 17(12Q21.33) MUTATED DEL PEAK 17(12Q21.33) WILD-TYPE
  CLUS_1                             1                              32
  CLUS_2                             3                              60
  CLUS_3                             3                              40
  CLUS_4                             1                              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(12Q21.33) MUTATED        2      4      1      1
  DEL PEAK 17(12Q21.33) WILD-TYPE     31     59     42     20
D24V4, multiclass
        clus
vv       DEL PEAK 17(12Q21.33) MUTATED DEL PEAK 17(12Q21.33) WILD-TYPE
  CLUS_1                             2                              31
  CLUS_2                             4                              59
  CLUS_3                             1                              42
  CLUS_4                             1                              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(12Q21.33) MUTATED        2      4      2
  DEL PEAK 17(12Q21.33) WILD-TYPE     62     53     37
D24V5, multiclass
        clus
vv       DEL PEAK 17(12Q21.33) MUTATED DEL PEAK 17(12Q21.33) WILD-TYPE
  CLUS_1                             2                              62
  CLUS_2                             4                              53
  CLUS_3                             2                              37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(12Q21.33) MUTATED        2      4      1      1
  DEL PEAK 17(12Q21.33) WILD-TYPE     63     49     17     23
D24V6, multiclass
        clus
vv       DEL PEAK 17(12Q21.33) MUTATED DEL PEAK 17(12Q21.33) WILD-TYPE
  CLUS_1                             2                              63
  CLUS_2                             4                              49
  CLUS_3                             1                              17
  CLUS_4                             1                              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(12Q21.33) MUTATED        2      5      1
  DEL PEAK 17(12Q21.33) WILD-TYPE     35     61     56
D24V7, multiclass
        clus
vv       DEL PEAK 17(12Q21.33) MUTATED DEL PEAK 17(12Q21.33) WILD-TYPE
  CLUS_1                             2                              35
  CLUS_2                             5                              61
  CLUS_3                             1                              56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(12Q21.33) MUTATED        2      4      2
  DEL PEAK 17(12Q21.33) WILD-TYPE     66     49     37
D24V8, multiclass
        clus
vv       DEL PEAK 17(12Q21.33) MUTATED DEL PEAK 17(12Q21.33) WILD-TYPE
  CLUS_1                             2                              66
  CLUS_2                             4                              49
  CLUS_3                             2                              37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = DEL PEAK 18(13Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(13Q22.3) MUTATED        1      1      2      3      0
  DEL PEAK 18(13Q22.3) WILD-TYPE     14     23     53     40     23
D25V1, multiclass
        clus
vv       DEL PEAK 18(13Q22.3) MUTATED DEL PEAK 18(13Q22.3) WILD-TYPE
  CLUS_1                            1                             14
  CLUS_2                            1                             23
  CLUS_3                            2                             53
  CLUS_4                            3                             40
  CLUS_5                            0                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(13Q22.3) MUTATED        1      4      2
  DEL PEAK 18(13Q22.3) WILD-TYPE     39     73     41
D25V2, multiclass
        clus
vv       DEL PEAK 18(13Q22.3) MUTATED DEL PEAK 18(13Q22.3) WILD-TYPE
  CLUS_1                            1                             39
  CLUS_2                            4                             73
  CLUS_3                            2                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(13Q22.3) MUTATED        0      4      3      0
  DEL PEAK 18(13Q22.3) WILD-TYPE     33     59     40     21
D25V3, multiclass
        clus
vv       DEL PEAK 18(13Q22.3) MUTATED DEL PEAK 18(13Q22.3) WILD-TYPE
  CLUS_1                            0                             33
  CLUS_2                            4                             59
  CLUS_3                            3                             40
  CLUS_4                            0                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(13Q22.3) MUTATED        2      4      1      0
  DEL PEAK 18(13Q22.3) WILD-TYPE     31     59     42     21
D25V4, multiclass
        clus
vv       DEL PEAK 18(13Q22.3) MUTATED DEL PEAK 18(13Q22.3) WILD-TYPE
  CLUS_1                            2                             31
  CLUS_2                            4                             59
  CLUS_3                            1                             42
  CLUS_4                            0                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(13Q22.3) MUTATED        2      3      2
  DEL PEAK 18(13Q22.3) WILD-TYPE     62     54     37
D25V5, multiclass
        clus
vv       DEL PEAK 18(13Q22.3) MUTATED DEL PEAK 18(13Q22.3) WILD-TYPE
  CLUS_1                            2                             62
  CLUS_2                            3                             54
  CLUS_3                            2                             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(13Q22.3) MUTATED        2      4      1      0
  DEL PEAK 18(13Q22.3) WILD-TYPE     63     49     17     24
D25V6, multiclass
        clus
vv       DEL PEAK 18(13Q22.3) MUTATED DEL PEAK 18(13Q22.3) WILD-TYPE
  CLUS_1                            2                             63
  CLUS_2                            4                             49
  CLUS_3                            1                             17
  CLUS_4                            0                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(13Q22.3) MUTATED        2      4      1
  DEL PEAK 18(13Q22.3) WILD-TYPE     35     62     56
D25V7, multiclass
        clus
vv       DEL PEAK 18(13Q22.3) MUTATED DEL PEAK 18(13Q22.3) WILD-TYPE
  CLUS_1                            2                             35
  CLUS_2                            4                             62
  CLUS_3                            1                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(13Q22.3) MUTATED        2      4      1
  DEL PEAK 18(13Q22.3) WILD-TYPE     66     49     38
D25V8, multiclass
        clus
vv       DEL PEAK 18(13Q22.3) MUTATED DEL PEAK 18(13Q22.3) WILD-TYPE
  CLUS_1                            2                             66
  CLUS_2                            4                             49
  CLUS_3                            1                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK 19(16Q21) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(16Q21) MUTATED        0      0      0      5      0
  DEL PEAK 19(16Q21) WILD-TYPE     15     24     55     38     23
D26V1, multiclass
        clus
vv       DEL PEAK 19(16Q21) MUTATED DEL PEAK 19(16Q21) WILD-TYPE
  CLUS_1                          0                           15
  CLUS_2                          0                           24
  CLUS_3                          0                           55
  CLUS_4                          5                           38
  CLUS_5                          0                           23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(16Q21) MUTATED        3      2      0
  DEL PEAK 19(16Q21) WILD-TYPE     37     75     43
D26V2, multiclass
        clus
vv       DEL PEAK 19(16Q21) MUTATED DEL PEAK 19(16Q21) WILD-TYPE
  CLUS_1                          3                           37
  CLUS_2                          2                           75
  CLUS_3                          0                           43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(16Q21) MUTATED        2      1      2      0
  DEL PEAK 19(16Q21) WILD-TYPE     31     62     41     21
D26V3, multiclass
        clus
vv       DEL PEAK 19(16Q21) MUTATED DEL PEAK 19(16Q21) WILD-TYPE
  CLUS_1                          2                           31
  CLUS_2                          1                           62
  CLUS_3                          2                           41
  CLUS_4                          0                           21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(16Q21) MUTATED        4      1      0      0
  DEL PEAK 19(16Q21) WILD-TYPE     29     62     43     21
D26V4, multiclass
        clus
vv       DEL PEAK 19(16Q21) MUTATED DEL PEAK 19(16Q21) WILD-TYPE
  CLUS_1                          4                           29
  CLUS_2                          1                           62
  CLUS_3                          0                           43
  CLUS_4                          0                           21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(16Q21) MUTATED        3      0      2
  DEL PEAK 19(16Q21) WILD-TYPE     61     57     37
D26V5, multiclass
        clus
vv       DEL PEAK 19(16Q21) MUTATED DEL PEAK 19(16Q21) WILD-TYPE
  CLUS_1                          3                           61
  CLUS_2                          0                           57
  CLUS_3                          2                           37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(16Q21) MUTATED        3      1      1      0
  DEL PEAK 19(16Q21) WILD-TYPE     62     52     17     24
D26V6, multiclass
        clus
vv       DEL PEAK 19(16Q21) MUTATED DEL PEAK 19(16Q21) WILD-TYPE
  CLUS_1                          3                           62
  CLUS_2                          1                           52
  CLUS_3                          1                           17
  CLUS_4                          0                           24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(16Q21) MUTATED        2      1      2
  DEL PEAK 19(16Q21) WILD-TYPE     35     65     55
D26V7, multiclass
        clus
vv       DEL PEAK 19(16Q21) MUTATED DEL PEAK 19(16Q21) WILD-TYPE
  CLUS_1                          2                           35
  CLUS_2                          1                           65
  CLUS_3                          2                           55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(16Q21) MUTATED        3      1      1
  DEL PEAK 19(16Q21) WILD-TYPE     65     52     38
D26V8, multiclass
        clus
vv       DEL PEAK 19(16Q21) MUTATED DEL PEAK 19(16Q21) WILD-TYPE
  CLUS_1                          3                           65
  CLUS_2                          1                           52
  CLUS_3                          1                           38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK 20(17P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(17P13.2) MUTATED        5      4     31     22      2
  DEL PEAK 20(17P13.2) WILD-TYPE     10     20     24     21     21
D27V1, multiclass
        clus
vv       DEL PEAK 20(17P13.2) MUTATED DEL PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                            5                             10
  CLUS_2                            4                             20
  CLUS_3                           31                             24
  CLUS_4                           22                             21
  CLUS_5                            2                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(17P13.2) MUTATED        9     43     12
  DEL PEAK 20(17P13.2) WILD-TYPE     31     34     31
D27V2, multiclass
        clus
vv       DEL PEAK 20(17P13.2) MUTATED DEL PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                            9                             31
  CLUS_2                           43                             34
  CLUS_3                           12                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(17P13.2) MUTATED       10     35     14      5
  DEL PEAK 20(17P13.2) WILD-TYPE     23     28     29     16
D27V3, multiclass
        clus
vv       DEL PEAK 20(17P13.2) MUTATED DEL PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                           10                             23
  CLUS_2                           35                             28
  CLUS_3                           14                             29
  CLUS_4                            5                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(17P13.2) MUTATED       10     36     13      5
  DEL PEAK 20(17P13.2) WILD-TYPE     23     27     30     16
D27V4, multiclass
        clus
vv       DEL PEAK 20(17P13.2) MUTATED DEL PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                           10                             23
  CLUS_2                           36                             27
  CLUS_3                           13                             30
  CLUS_4                            5                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(17P13.2) MUTATED       21     31     12
  DEL PEAK 20(17P13.2) WILD-TYPE     43     26     27
D27V5, multiclass
        clus
vv       DEL PEAK 20(17P13.2) MUTATED DEL PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                           21                             43
  CLUS_2                           31                             26
  CLUS_3                           12                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(17P13.2) MUTATED       18     30      9      7
  DEL PEAK 20(17P13.2) WILD-TYPE     47     23      9     17
D27V6, multiclass
        clus
vv       DEL PEAK 20(17P13.2) MUTATED DEL PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                           18                             47
  CLUS_2                           30                             23
  CLUS_3                            9                              9
  CLUS_4                            7                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(17P13.2) MUTATED       12     37     15
  DEL PEAK 20(17P13.2) WILD-TYPE     25     29     42
D27V7, multiclass
        clus
vv       DEL PEAK 20(17P13.2) MUTATED DEL PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                           12                             25
  CLUS_2                           37                             29
  CLUS_3                           15                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(17P13.2) MUTATED       20     29     15
  DEL PEAK 20(17P13.2) WILD-TYPE     48     24     24
D27V8, multiclass
        clus
vv       DEL PEAK 20(17P13.2) MUTATED DEL PEAK 20(17P13.2) WILD-TYPE
  CLUS_1                           20                             48
  CLUS_2                           29                             24
  CLUS_3                           15                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK 21(17Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(17Q11.2) MUTATED        1      0     25     16      0
  DEL PEAK 21(17Q11.2) WILD-TYPE     14     24     30     27     23
D28V1, multiclass
        clus
vv       DEL PEAK 21(17Q11.2) MUTATED DEL PEAK 21(17Q11.2) WILD-TYPE
  CLUS_1                            1                             14
  CLUS_2                            0                             24
  CLUS_3                           25                             30
  CLUS_4                           16                             27
  CLUS_5                            0                             23
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(17Q11.2) MUTATED        4     29      9
  DEL PEAK 21(17Q11.2) WILD-TYPE     36     48     34
D28V2, multiclass
        clus
vv       DEL PEAK 21(17Q11.2) MUTATED DEL PEAK 21(17Q11.2) WILD-TYPE
  CLUS_1                            4                             36
  CLUS_2                           29                             48
  CLUS_3                            9                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(17Q11.2) MUTATED        5     25      9      3
  DEL PEAK 21(17Q11.2) WILD-TYPE     28     38     34     18
D28V3, multiclass
        clus
vv       DEL PEAK 21(17Q11.2) MUTATED DEL PEAK 21(17Q11.2) WILD-TYPE
  CLUS_1                            5                             28
  CLUS_2                           25                             38
  CLUS_3                            9                             34
  CLUS_4                            3                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(17Q11.2) MUTATED        6     27      6      3
  DEL PEAK 21(17Q11.2) WILD-TYPE     27     36     37     18
D28V4, multiclass
        clus
vv       DEL PEAK 21(17Q11.2) MUTATED DEL PEAK 21(17Q11.2) WILD-TYPE
  CLUS_1                            6                             27
  CLUS_2                           27                             36
  CLUS_3                            6                             37
  CLUS_4                            3                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(17Q11.2) MUTATED       13     21      8
  DEL PEAK 21(17Q11.2) WILD-TYPE     51     36     31
D28V5, multiclass
        clus
vv       DEL PEAK 21(17Q11.2) MUTATED DEL PEAK 21(17Q11.2) WILD-TYPE
  CLUS_1                           13                             51
  CLUS_2                           21                             36
  CLUS_3                            8                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(17Q11.2) MUTATED       12     21      4      5
  DEL PEAK 21(17Q11.2) WILD-TYPE     53     32     14     19
D28V6, multiclass
        clus
vv       DEL PEAK 21(17Q11.2) MUTATED DEL PEAK 21(17Q11.2) WILD-TYPE
  CLUS_1                           12                             53
  CLUS_2                           21                             32
  CLUS_3                            4                             14
  CLUS_4                            5                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(17Q11.2) MUTATED        9     26      7
  DEL PEAK 21(17Q11.2) WILD-TYPE     28     40     50
D28V7, multiclass
        clus
vv       DEL PEAK 21(17Q11.2) MUTATED DEL PEAK 21(17Q11.2) WILD-TYPE
  CLUS_1                            9                             28
  CLUS_2                           26                             40
  CLUS_3                            7                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(17Q11.2) MUTATED       13     21      8
  DEL PEAK 21(17Q11.2) WILD-TYPE     55     32     31
D28V8, multiclass
        clus
vv       DEL PEAK 21(17Q11.2) MUTATED DEL PEAK 21(17Q11.2) WILD-TYPE
  CLUS_1                           13                             55
  CLUS_2                           21                             32
  CLUS_3                            8                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK 22(22Q13.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(22Q13.31) MUTATED        6      6     39     11      2
  DEL PEAK 22(22Q13.31) WILD-TYPE      9     18     16     32     21
D29V1, multiclass
        clus
vv       DEL PEAK 22(22Q13.31) MUTATED DEL PEAK 22(22Q13.31) WILD-TYPE
  CLUS_1                             6                               9
  CLUS_2                             6                              18
  CLUS_3                            39                              16
  CLUS_4                            11                              32
  CLUS_5                             2                              21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(22Q13.31) MUTATED       10     40     14
  DEL PEAK 22(22Q13.31) WILD-TYPE     30     37     29
D29V2, multiclass
        clus
vv       DEL PEAK 22(22Q13.31) MUTATED DEL PEAK 22(22Q13.31) WILD-TYPE
  CLUS_1                            10                              30
  CLUS_2                            40                              37
  CLUS_3                            14                              29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(22Q13.31) MUTATED        8     36     12      8
  DEL PEAK 22(22Q13.31) WILD-TYPE     25     27     31     13
D29V3, multiclass
        clus
vv       DEL PEAK 22(22Q13.31) MUTATED DEL PEAK 22(22Q13.31) WILD-TYPE
  CLUS_1                             8                              25
  CLUS_2                            36                              27
  CLUS_3                            12                              31
  CLUS_4                             8                              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(22Q13.31) MUTATED       13     37      7      7
  DEL PEAK 22(22Q13.31) WILD-TYPE     20     26     36     14
D29V4, multiclass
        clus
vv       DEL PEAK 22(22Q13.31) MUTATED DEL PEAK 22(22Q13.31) WILD-TYPE
  CLUS_1                            13                              20
  CLUS_2                            37                              26
  CLUS_3                             7                              36
  CLUS_4                             7                              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(22Q13.31) MUTATED       15     30     19
  DEL PEAK 22(22Q13.31) WILD-TYPE     49     27     20
D29V5, multiclass
        clus
vv       DEL PEAK 22(22Q13.31) MUTATED DEL PEAK 22(22Q13.31) WILD-TYPE
  CLUS_1                            15                              49
  CLUS_2                            30                              27
  CLUS_3                            19                              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(22Q13.31) MUTATED       16     29      8     11
  DEL PEAK 22(22Q13.31) WILD-TYPE     49     24     10     13
D29V6, multiclass
        clus
vv       DEL PEAK 22(22Q13.31) MUTATED DEL PEAK 22(22Q13.31) WILD-TYPE
  CLUS_1                            16                              49
  CLUS_2                            29                              24
  CLUS_3                             8                              10
  CLUS_4                            11                              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(22Q13.31) MUTATED        9     36     19
  DEL PEAK 22(22Q13.31) WILD-TYPE     28     30     38
D29V7, multiclass
        clus
vv       DEL PEAK 22(22Q13.31) MUTATED DEL PEAK 22(22Q13.31) WILD-TYPE
  CLUS_1                             9                              28
  CLUS_2                            36                              30
  CLUS_3                            19                              38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(22Q13.31) MUTATED       16     30     18
  DEL PEAK 22(22Q13.31) WILD-TYPE     52     23     21
D29V8, multiclass
        clus
vv       DEL PEAK 22(22Q13.31) MUTATED DEL PEAK 22(22Q13.31) WILD-TYPE
  CLUS_1                            16                              52
  CLUS_2                            30                              23
  CLUS_3                            18                              21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK 23(XP21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(XP21.1) MUTATED        5      0     20     15      6
  DEL PEAK 23(XP21.1) WILD-TYPE     10     24     35     28     17
D30V1, multiclass
        clus
vv       DEL PEAK 23(XP21.1) MUTATED DEL PEAK 23(XP21.1) WILD-TYPE
  CLUS_1                           5                            10
  CLUS_2                           0                            24
  CLUS_3                          20                            35
  CLUS_4                          15                            28
  CLUS_5                           6                            17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(XP21.1) MUTATED        9     31      6
  DEL PEAK 23(XP21.1) WILD-TYPE     31     46     37
D30V2, multiclass
        clus
vv       DEL PEAK 23(XP21.1) MUTATED DEL PEAK 23(XP21.1) WILD-TYPE
  CLUS_1                           9                            31
  CLUS_2                          31                            46
  CLUS_3                           6                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(XP21.1) MUTATED       10     25      9      2
  DEL PEAK 23(XP21.1) WILD-TYPE     23     38     34     19
D30V3, multiclass
        clus
vv       DEL PEAK 23(XP21.1) MUTATED DEL PEAK 23(XP21.1) WILD-TYPE
  CLUS_1                          10                            23
  CLUS_2                          25                            38
  CLUS_3                           9                            34
  CLUS_4                           2                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(XP21.1) MUTATED        7     27     11      1
  DEL PEAK 23(XP21.1) WILD-TYPE     26     36     32     20
D30V4, multiclass
        clus
vv       DEL PEAK 23(XP21.1) MUTATED DEL PEAK 23(XP21.1) WILD-TYPE
  CLUS_1                           7                            26
  CLUS_2                          27                            36
  CLUS_3                          11                            32
  CLUS_4                           1                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(XP21.1) MUTATED       13     27      6
  DEL PEAK 23(XP21.1) WILD-TYPE     51     30     33
D30V5, multiclass
        clus
vv       DEL PEAK 23(XP21.1) MUTATED DEL PEAK 23(XP21.1) WILD-TYPE
  CLUS_1                          13                            51
  CLUS_2                          27                            30
  CLUS_3                           6                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(XP21.1) MUTATED       15     21      7      3
  DEL PEAK 23(XP21.1) WILD-TYPE     50     32     11     21
D30V6, multiclass
        clus
vv       DEL PEAK 23(XP21.1) MUTATED DEL PEAK 23(XP21.1) WILD-TYPE
  CLUS_1                          15                            50
  CLUS_2                          21                            32
  CLUS_3                           7                            11
  CLUS_4                           3                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(XP21.1) MUTATED        8     26     12
  DEL PEAK 23(XP21.1) WILD-TYPE     29     40     45
D30V7, multiclass
        clus
vv       DEL PEAK 23(XP21.1) MUTATED DEL PEAK 23(XP21.1) WILD-TYPE
  CLUS_1                           8                            29
  CLUS_2                          26                            40
  CLUS_3                          12                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(XP21.1) MUTATED       13     23     10
  DEL PEAK 23(XP21.1) WILD-TYPE     55     30     29
D30V8, multiclass
        clus
vv       DEL PEAK 23(XP21.1) MUTATED DEL PEAK 23(XP21.1) WILD-TYPE
  CLUS_1                          13                            55
  CLUS_2                          23                            30
  CLUS_3                          10                            29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
