[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oTPRAD-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/PRAD-TP/10006169/PRAD-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PRAD-TP/10013799/transformed.cor.cli.txt"

nPatients in clinical file=276, in cluster file=419, common to both=271
[1]  62 271
[1] "AMP PEAK  1(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                           21                           250 
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                           21                           250 
[1] "AMP PEAK  2(3Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE 
                           32                           239 
  AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE 
                           32                           239 
[1] "AMP PEAK  3(3Q26.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE 
                           40                           231 
  AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE 
                           40                           231 
[1] "AMP PEAK  4(4Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(4Q13.3) MUTATED AMP PEAK  4(4Q13.3) WILD-TYPE 
                            5                           266 
  AMP PEAK  4(4Q13.3) MUTATED AMP PEAK  4(4Q13.3) WILD-TYPE 
                            5                           266 
[1] "AMP PEAK  5(5Q33.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(5Q33.3) MUTATED AMP PEAK  5(5Q33.3) WILD-TYPE 
                            8                           263 
  AMP PEAK  5(5Q33.3) MUTATED AMP PEAK  5(5Q33.3) WILD-TYPE 
                            8                           263 
[1] "AMP PEAK  6(7P14.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(7P14.3) MUTATED AMP PEAK  6(7P14.3) WILD-TYPE 
                           47                           224 
  AMP PEAK  6(7P14.3) MUTATED AMP PEAK  6(7P14.3) WILD-TYPE 
                           47                           224 
[1] "AMP PEAK  7(8P11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE 
                            26                            245 
  AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE 
                            26                            245 
[1] "AMP PEAK  8(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE 
                            64                            207 
  AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE 
                            64                            207 
[1] "AMP PEAK  9(9Q34.11) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(9Q34.11) MUTATED AMP PEAK  9(9Q34.11) WILD-TYPE 
                            25                            246 
  AMP PEAK  9(9Q34.11) MUTATED AMP PEAK  9(9Q34.11) WILD-TYPE 
                            25                            246 
[1] "AMP PEAK 10(11Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(11Q13.2) MUTATED AMP PEAK 10(11Q13.2) WILD-TYPE 
                            14                            257 
  AMP PEAK 10(11Q13.2) MUTATED AMP PEAK 10(11Q13.2) WILD-TYPE 
                            14                            257 
[1] "AMP PEAK 11(12Q23.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(12Q23.1) MUTATED AMP PEAK 11(12Q23.1) WILD-TYPE 
                            10                            261 
  AMP PEAK 11(12Q23.1) MUTATED AMP PEAK 11(12Q23.1) WILD-TYPE 
                            10                            261 
[1] "AMP PEAK 12(13Q12.11) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(13Q12.11) MUTATED AMP PEAK 12(13Q12.11) WILD-TYPE 
                             12                             259 
  AMP PEAK 12(13Q12.11) MUTATED AMP PEAK 12(13Q12.11) WILD-TYPE 
                             12                             259 
[1] "AMP PEAK 13(14Q21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(14Q21.1) MUTATED AMP PEAK 13(14Q21.1) WILD-TYPE 
                            14                            257 
  AMP PEAK 13(14Q21.1) MUTATED AMP PEAK 13(14Q21.1) WILD-TYPE 
                            14                            257 
[1] "AMP PEAK 14(15Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(15Q11.2) MUTATED AMP PEAK 14(15Q11.2) WILD-TYPE 
                             5                            266 
  AMP PEAK 14(15Q11.2) MUTATED AMP PEAK 14(15Q11.2) WILD-TYPE 
                             5                            266 
[1] "AMP PEAK 15(16Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(16Q11.2) MUTATED AMP PEAK 15(16Q11.2) WILD-TYPE 
                            13                            258 
  AMP PEAK 15(16Q11.2) MUTATED AMP PEAK 15(16Q11.2) WILD-TYPE 
                            13                            258 
[1] "AMP PEAK 16(17Q23.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(17Q23.2) MUTATED AMP PEAK 16(17Q23.2) WILD-TYPE 
                             9                            262 
  AMP PEAK 16(17Q23.2) MUTATED AMP PEAK 16(17Q23.2) WILD-TYPE 
                             9                            262 
[1] "AMP PEAK 17(18Q21.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(18Q21.31) MUTATED AMP PEAK 17(18Q21.31) WILD-TYPE 
                              6                             265 
  AMP PEAK 17(18Q21.31) MUTATED AMP PEAK 17(18Q21.31) WILD-TYPE 
                              6                             265 
[1] "AMP PEAK 18(19Q13.43) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(19Q13.43) MUTATED AMP PEAK 18(19Q13.43) WILD-TYPE 
                              5                             266 
  AMP PEAK 18(19Q13.43) MUTATED AMP PEAK 18(19Q13.43) WILD-TYPE 
                              5                             266 
[1] "AMP PEAK 19(20Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(20Q13.2) MUTATED AMP PEAK 19(20Q13.2) WILD-TYPE 
                            14                            257 
  AMP PEAK 19(20Q13.2) MUTATED AMP PEAK 19(20Q13.2) WILD-TYPE 
                            14                            257 
[1] "AMP PEAK 20(XP22.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(XP22.2) MUTATED AMP PEAK 20(XP22.2) WILD-TYPE 
                            8                           263 
  AMP PEAK 20(XP22.2) MUTATED AMP PEAK 20(XP22.2) WILD-TYPE 
                            8                           263 
[1] "AMP PEAK 21(XP22.11) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(XP22.11) MUTATED AMP PEAK 21(XP22.11) WILD-TYPE 
                             9                            262 
  AMP PEAK 21(XP22.11) MUTATED AMP PEAK 21(XP22.11) WILD-TYPE 
                             9                            262 
[1] "AMP PEAK 22(XP22.11) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(XP22.11) MUTATED AMP PEAK 22(XP22.11) WILD-TYPE 
                             9                            262 
  AMP PEAK 22(XP22.11) MUTATED AMP PEAK 22(XP22.11) WILD-TYPE 
                             9                            262 
[1] "AMP PEAK 23(XP21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(XP21.1) MUTATED AMP PEAK 23(XP21.1) WILD-TYPE 
                            8                           263 
  AMP PEAK 23(XP21.1) MUTATED AMP PEAK 23(XP21.1) WILD-TYPE 
                            8                           263 
[1] "AMP PEAK 24(XQ21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(XQ21.1) MUTATED AMP PEAK 24(XQ21.1) WILD-TYPE 
                            7                           264 
  AMP PEAK 24(XQ21.1) MUTATED AMP PEAK 24(XQ21.1) WILD-TYPE 
                            7                           264 
[1] "AMP PEAK 25(XQ21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE 
                            5                           266 
  AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE 
                            5                           266 
[1] "AMP PEAK 26(XQ21.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(XQ21.31) MUTATED AMP PEAK 26(XQ21.31) WILD-TYPE 
                             5                            266 
  AMP PEAK 26(XQ21.31) MUTATED AMP PEAK 26(XQ21.31) WILD-TYPE 
                             5                            266 
[1] "AMP PEAK 27(XQ25) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(XQ25) MUTATED AMP PEAK 27(XQ25) WILD-TYPE 
                          4                         267 
  AMP PEAK 27(XQ25) MUTATED AMP PEAK 27(XQ25) WILD-TYPE 
                          4                         267 
[1] "AMP PEAK 28(XQ25) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 28(XQ25) MUTATED AMP PEAK 28(XQ25) WILD-TYPE 
                          6                         265 
  AMP PEAK 28(XQ25) MUTATED AMP PEAK 28(XQ25) WILD-TYPE 
                          6                         265 
[1] "AMP PEAK 29(XQ27.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 29(XQ27.1) MUTATED AMP PEAK 29(XQ27.1) WILD-TYPE 
                            9                           262 
  AMP PEAK 29(XQ27.1) MUTATED AMP PEAK 29(XQ27.1) WILD-TYPE 
                            9                           262 
[1] "DEL PEAK  1(1P31.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE 
                           33                           238 
  DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE 
                           33                           238 
[1] "DEL PEAK  2(1P22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                           21                           250 
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                           21                           250 
[1] "DEL PEAK  3(1Q42.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1Q42.2) MUTATED DEL PEAK  3(1Q42.2) WILD-TYPE 
                           22                           249 
  DEL PEAK  3(1Q42.2) MUTATED DEL PEAK  3(1Q42.2) WILD-TYPE 
                           22                           249 
[1] "DEL PEAK  4(2P22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2P22.1) MUTATED DEL PEAK  4(2P22.1) WILD-TYPE 
                           17                           254 
  DEL PEAK  4(2P22.1) MUTATED DEL PEAK  4(2P22.1) WILD-TYPE 
                           17                           254 
[1] "DEL PEAK  5(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE 
                           37                           234 
  DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE 
                           37                           234 
[1] "DEL PEAK  6(2Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(2Q22.3) MUTATED DEL PEAK  6(2Q22.3) WILD-TYPE 
                           34                           237 
  DEL PEAK  6(2Q22.3) MUTATED DEL PEAK  6(2Q22.3) WILD-TYPE 
                           34                           237 
[1] "DEL PEAK  7(3P13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE 
                         43                         228 
  DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE 
                         43                         228 
[1] "DEL PEAK  8(3Q29) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE 
                         16                         255 
  DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE 
                         16                         255 
[1] "DEL PEAK  9(4Q28.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(4Q28.1) MUTATED DEL PEAK  9(4Q28.1) WILD-TYPE 
                           24                           247 
  DEL PEAK  9(4Q28.1) MUTATED DEL PEAK  9(4Q28.1) WILD-TYPE 
                           24                           247 
[1] "DEL PEAK 10(5Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE 
                           38                           233 
  DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE 
                           38                           233 
[1] "DEL PEAK 11(5Q13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE 
                           37                           234 
  DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE 
                           37                           234 
[1] "DEL PEAK 12(5Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(5Q21.1) MUTATED DEL PEAK 12(5Q21.1) WILD-TYPE 
                           45                           226 
  DEL PEAK 12(5Q21.1) MUTATED DEL PEAK 12(5Q21.1) WILD-TYPE 
                           45                           226 
[1] "DEL PEAK 13(6Q14.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(6Q14.3) MUTATED DEL PEAK 13(6Q14.3) WILD-TYPE 
                           85                           186 
  DEL PEAK 13(6Q14.3) MUTATED DEL PEAK 13(6Q14.3) WILD-TYPE 
                           85                           186 
[1] "DEL PEAK 14(7Q31.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(7Q31.33) MUTATED DEL PEAK 14(7Q31.33) WILD-TYPE 
                            13                            258 
  DEL PEAK 14(7Q31.33) MUTATED DEL PEAK 14(7Q31.33) WILD-TYPE 
                            13                            258 
[1] "DEL PEAK 15(8P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(8P21.3) MUTATED DEL PEAK 15(8P21.3) WILD-TYPE 
                          146                           125 
  DEL PEAK 15(8P21.3) MUTATED DEL PEAK 15(8P21.3) WILD-TYPE 
                          146                           125 
[1] "DEL PEAK 16(8P11.21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE 
                            82                            189 
  DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE 
                            82                            189 
[1] "DEL PEAK 17(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE 
                         24                         247 
  DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE 
                         24                         247 
[1] "DEL PEAK 18(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE 
                             84                             187 
  DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE 
                             84                             187 
[1] "DEL PEAK 19(11P11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(11P11.2) MUTATED DEL PEAK 19(11P11.2) WILD-TYPE 
                            12                            259 
  DEL PEAK 19(11P11.2) MUTATED DEL PEAK 19(11P11.2) WILD-TYPE 
                            12                            259 
[1] "DEL PEAK 20(11Q23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(11Q23.2) MUTATED DEL PEAK 20(11Q23.2) WILD-TYPE 
                            27                            244 
  DEL PEAK 20(11Q23.2) MUTATED DEL PEAK 20(11Q23.2) WILD-TYPE 
                            27                            244 
[1] "DEL PEAK 21(12P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE 
                            55                            216 
  DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE 
                            55                            216 
[1] "DEL PEAK 22(12Q24.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(12Q24.31) MUTATED DEL PEAK 22(12Q24.31) WILD-TYPE 
                             20                             251 
  DEL PEAK 22(12Q24.31) MUTATED DEL PEAK 22(12Q24.31) WILD-TYPE 
                             20                             251 
[1] "DEL PEAK 23(13Q14.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(13Q14.13) MUTATED DEL PEAK 23(13Q14.13) WILD-TYPE 
                            116                             155 
  DEL PEAK 23(13Q14.13) MUTATED DEL PEAK 23(13Q14.13) WILD-TYPE 
                            116                             155 
[1] "DEL PEAK 24(13Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(13Q22.1) MUTATED DEL PEAK 24(13Q22.1) WILD-TYPE 
                            89                            182 
  DEL PEAK 24(13Q22.1) MUTATED DEL PEAK 24(13Q22.1) WILD-TYPE 
                            89                            182 
[1] "DEL PEAK 25(15Q21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(15Q21.3) MUTATED DEL PEAK 25(15Q21.3) WILD-TYPE 
                            30                            241 
  DEL PEAK 25(15Q21.3) MUTATED DEL PEAK 25(15Q21.3) WILD-TYPE 
                            30                            241 
[1] "DEL PEAK 26(16Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(16Q22.3) MUTATED DEL PEAK 26(16Q22.3) WILD-TYPE 
                            93                            178 
  DEL PEAK 26(16Q22.3) MUTATED DEL PEAK 26(16Q22.3) WILD-TYPE 
                            93                            178 
[1] "DEL PEAK 27(16Q24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(16Q24.1) MUTATED DEL PEAK 27(16Q24.1) WILD-TYPE 
                           105                            166 
  DEL PEAK 27(16Q24.1) MUTATED DEL PEAK 27(16Q24.1) WILD-TYPE 
                           105                            166 
[1] "DEL PEAK 28(17P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(17P13.1) MUTATED DEL PEAK 28(17P13.1) WILD-TYPE 
                            69                            202 
  DEL PEAK 28(17P13.1) MUTATED DEL PEAK 28(17P13.1) WILD-TYPE 
                            69                            202 
[1] "DEL PEAK 29(17Q21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(17Q21.31) MUTATED DEL PEAK 29(17Q21.31) WILD-TYPE 
                             53                             218 
  DEL PEAK 29(17Q21.31) MUTATED DEL PEAK 29(17Q21.31) WILD-TYPE 
                             53                             218 
[1] "DEL PEAK 30(18Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE 
                            68                            203 
  DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE 
                            68                            203 
[1] "DEL PEAK 31(19Q13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(19Q13.2) MUTATED DEL PEAK 31(19Q13.2) WILD-TYPE 
                            24                            247 
  DEL PEAK 31(19Q13.2) MUTATED DEL PEAK 31(19Q13.2) WILD-TYPE 
                            24                            247 
[1] "DEL PEAK 32(21Q22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(21Q22.2) MUTATED DEL PEAK 32(21Q22.2) WILD-TYPE 
                            26                            245 
  DEL PEAK 32(21Q22.2) MUTATED DEL PEAK 32(21Q22.2) WILD-TYPE 
                            26                            245 
[1] "DEL PEAK 33(21Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(21Q22.3) MUTATED DEL PEAK 33(21Q22.3) WILD-TYPE 
                            77                            194 
  DEL PEAK 33(21Q22.3) MUTATED DEL PEAK 33(21Q22.3) WILD-TYPE 
                            77                            194 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "RADIATIONTHERAPY"                      
[14] "HISTOLOGICALTYPE"                      
[15] "RADIATIONS.RADIATION.REGIMENINDICATION"
[16] "COMPLETENESS.OF.RESECTION"             
[17] "NUMBER.OF.LYMPH.NODES"                 
[18] "GLEASON_SCORE_COMBINED"                
[19] "GLEASON_SCORE_PRIMARY"                 
[20] "GLEASON_SCORE_SECONDARY"               
[21] "HIGHEST_GLEASON_SCORE"                 
[22] "GLEASON_SCORE"                         
[23] "PSA_RESULT_PREOP"                      
[24] "DAYS_TO_PREOP_PSA"                     
[25] "PSA_VALUE"                             
[26] "DAYS_TO_PSA"                           
[27] "RACE"                                  
[28] "ETHNICITY"                             
[29] "BATCHNUMBER"                           

Input Data has 29 rows and 271 columns.

[1] "Batch" "29"   
[1] "Last Follow UP"
TCGA-CH-5737 TCGA-CH-5738 TCGA-CH-5739 TCGA-CH-5740 TCGA-CH-5741 TCGA-CH-5743 
          91          212          671           31          395          425 
TCGA-CH-5744 TCGA-CH-5746 TCGA-CH-5748 TCGA-CH-5750 TCGA-CH-5751 TCGA-CH-5752 
          60          731           31          396         1065          943 
TCGA-CH-5753 TCGA-CH-5754 TCGA-CH-5761 TCGA-CH-5762 TCGA-CH-5763 TCGA-CH-5764 
          31           62           28         1339          365           31 
TCGA-CH-5765 TCGA-CH-5766 TCGA-CH-5767 TCGA-CH-5768 TCGA-CH-5769 TCGA-CH-5771 
         700           31          458          731           62          396 
TCGA-CH-5772 TCGA-CH-5788 TCGA-CH-5789 TCGA-CH-5790 TCGA-CH-5791 TCGA-CH-5792 
         486          821          304          974         1004           91 
TCGA-CH-5794 TCGA-EJ-5494 TCGA-EJ-5495 TCGA-EJ-5496 TCGA-EJ-5497 TCGA-EJ-5498 
         882          826         1007          595          405          906 
TCGA-EJ-5499 TCGA-EJ-5501 TCGA-EJ-5502 TCGA-EJ-5503 TCGA-EJ-5504 TCGA-EJ-5505 
         533          937          800          716          880          922 
TCGA-EJ-5506 TCGA-EJ-5507 TCGA-EJ-5508 TCGA-EJ-5509 TCGA-EJ-5510 TCGA-EJ-5511 
         827          727         1184         1102         1116          974 
TCGA-EJ-5512 TCGA-EJ-5514 TCGA-EJ-5515 TCGA-EJ-5516 TCGA-EJ-5517 TCGA-EJ-5518 
        1172         1102         1240         1416         1454         1590 
TCGA-EJ-5519 TCGA-EJ-5521 TCGA-EJ-5522 TCGA-EJ-5524 TCGA-EJ-5525 TCGA-EJ-5526 
        1336         1578         1462         1310         1115         1179 
TCGA-EJ-5527 TCGA-EJ-5530 TCGA-EJ-5531 TCGA-EJ-5532 TCGA-EJ-5542 TCGA-EJ-7115 
        1209         1832          921         1456          884          822 
TCGA-EJ-7123 TCGA-EJ-7125 TCGA-EJ-7314 TCGA-EJ-7315 TCGA-EJ-7317 TCGA-EJ-7321 
        1491         1860          295          289          285          233 
TCGA-EJ-7327 TCGA-EJ-7328 TCGA-EJ-7330 TCGA-EJ-7331 TCGA-EJ-7781 TCGA-EJ-7782 
         175          170          191            9          169           64 
TCGA-EJ-7783 TCGA-EJ-7784 TCGA-EJ-7785 TCGA-EJ-7786 TCGA-EJ-7788 TCGA-EJ-7789 
         787          781          625          442           52          552 
TCGA-EJ-7791 TCGA-EJ-7792 TCGA-EJ-7793 TCGA-EJ-7794 TCGA-EJ-7797 TCGA-EJ-8468 
         596          526          114          701          369         1961 
TCGA-EJ-8469 TCGA-EJ-8470 TCGA-EJ-8472 TCGA-EJ-8474 TCGA-EJ-A46B TCGA-EJ-A46D 
        1946          821           NA          314          162          129 
TCGA-EJ-A46E TCGA-EJ-A46F TCGA-EJ-A46G TCGA-EJ-A46H TCGA-EJ-A46I TCGA-EJ-A65B 
         532          299           93          229          668          536 
TCGA-EJ-A65D TCGA-EJ-A65E TCGA-EJ-A65G TCGA-EJ-A65J TCGA-EJ-A65M TCGA-FC-7708 
         393          417          278           91          230          864 
TCGA-FC-7961 TCGA-FC-A4JI TCGA-FC-A5OB TCGA-FC-A66V TCGA-FC-A6HD TCGA-FC-A8O0 
         469          409          273          524           54           54 
TCGA-G9-6329 TCGA-G9-6332 TCGA-G9-6333 TCGA-G9-6336 TCGA-G9-6338 TCGA-G9-6339 
        1266         2657         2465         2068         2028         2110 
TCGA-G9-6342 TCGA-G9-6343 TCGA-G9-6347 TCGA-G9-6348 TCGA-G9-6351 TCGA-G9-6353 
        1696          554         1718         1515         1404         1542 
TCGA-G9-6354 TCGA-G9-6356 TCGA-G9-6361 TCGA-G9-6362 TCGA-G9-6363 TCGA-G9-6364 
        1501         1434         1415         1443         1378         1198 
TCGA-G9-6365 TCGA-G9-6366 TCGA-G9-6367 TCGA-G9-6369 TCGA-G9-6370 TCGA-G9-6371 
        1363          101         1222         1215         1156         1226 
TCGA-G9-6373 TCGA-G9-6377 TCGA-G9-6378 TCGA-G9-6379 TCGA-G9-6384 TCGA-G9-6385 
         811          958         1155         1393          765          830 
TCGA-G9-6494 TCGA-G9-6496 TCGA-G9-6498 TCGA-G9-6499 TCGA-G9-7510 TCGA-G9-7519 
        1771         1726         1608         1543         1185          849 
TCGA-G9-7521 TCGA-G9-7522 TCGA-G9-7523 TCGA-G9-7525 TCGA-H9-7775 TCGA-H9-A6BX 
         942         1075          857          994          185          570 
TCGA-H9-A6BY TCGA-HC-7075 TCGA-HC-7077 TCGA-HC-7078 TCGA-HC-7079 TCGA-HC-7080 
         112          601           NA          162           89           61 
TCGA-HC-7081 TCGA-HC-7209 TCGA-HC-7210 TCGA-HC-7211 TCGA-HC-7212 TCGA-HC-7213 
          72           41          149           24          870           60 
TCGA-HC-7230 TCGA-HC-7231 TCGA-HC-7232 TCGA-HC-7233 TCGA-HC-7736 TCGA-HC-7737 
          51           72           89           52           22           64 
TCGA-HC-7738 TCGA-HC-7740 TCGA-HC-7742 TCGA-HC-7744 TCGA-HC-7745 TCGA-HC-7747 
          81           53           45           51           63           57 
TCGA-HC-7748 TCGA-HC-7749 TCGA-HC-7750 TCGA-HC-7752 TCGA-HC-7817 TCGA-HC-7818 
         792           60           34           98           32           45 
TCGA-HC-7819 TCGA-HC-7820 TCGA-HC-7821 TCGA-HC-8213 TCGA-HC-8216 TCGA-HC-8256 
         543          747           56          589          682           95 
TCGA-HC-8257 TCGA-HC-8258 TCGA-HC-8259 TCGA-HC-8260 TCGA-HC-8261 TCGA-HC-8262 
         726           66           69           59          546          679 
TCGA-HC-8264 TCGA-HC-8265 TCGA-HC-8266 TCGA-HC-A48F TCGA-HC-A4ZV TCGA-HC-A631 
          48          483           35           46           23           54 
TCGA-HC-A632 TCGA-HC-A6AL TCGA-HC-A6AN TCGA-HC-A6AO TCGA-HC-A6AP TCGA-HC-A6AQ 
          61           67           49          167           71          106 
TCGA-HC-A6AS TCGA-HC-A6HX TCGA-HC-A6HY TCGA-HI-7168 TCGA-HI-7169 TCGA-HI-7170 
          44           38          134         2391         1949         2522 
TCGA-HI-7171 TCGA-J4-8198 TCGA-J4-8200 TCGA-J4-A67K TCGA-J4-A67L TCGA-J4-A67M 
          NA          614          374          662          518          488 
TCGA-J4-A67N TCGA-J4-A67O TCGA-J4-A67Q TCGA-J4-A67R TCGA-J4-A67S TCGA-J4-A67T 
         503          491          624          454          523          183 
TCGA-J4-A6G1 TCGA-J4-A6G3 TCGA-J4-A6M7 TCGA-J4-A83I TCGA-J4-A83J TCGA-J4-A83K 
         405          528          279          279          310          206 
TCGA-J4-A83L TCGA-J4-A83M TCGA-J4-A83N TCGA-J9-A52B TCGA-J9-A52E TCGA-KK-A59V 
         316          437          617          422          323         2859 
TCGA-KK-A59X TCGA-KK-A59Y TCGA-KK-A59Z TCGA-KK-A6DY TCGA-KK-A6E3 TCGA-KK-A6E4 
        1712         1359         1879         3524         2056         2753 
TCGA-KK-A6E5 TCGA-KK-A6E7 TCGA-M7-A71Y TCGA-M7-A71Z TCGA-M7-A720 TCGA-M7-A721 
        1498         2040          158          209          302          204 
TCGA-M7-A722 TCGA-M7-A723 TCGA-M7-A724 TCGA-M7-A725 TCGA-QU-A6IL TCGA-QU-A6IM 
         822           62          483           96           97         1247 
TCGA-QU-A6IP TCGA-VN-A88I TCGA-VN-A88K TCGA-VN-A88L TCGA-VN-A88M TCGA-VN-A88N 
        2620          269          776          394          183          176 
TCGA-VN-A88O TCGA-VN-A88P TCGA-VN-A88Q TCGA-VN-A88R TCGA-WW-A8ZI TCGA-XA-A8JR 
         481          917         1001          459          176          119 
TCGA-Y6-A8TL 
         775 
Variable 1:'AGE':	nDistinctValues=32,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=TRUE.
Variable 3:'DAYSTODEATH':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=238,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=12,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 14:'HISTOLOGICAL.TYPE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 16:'COMPLETENESS.OF.RESECTION':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=6,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'GLEASON_SCORE_COMBINED':	nDistinctValues=6,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 19:'GLEASON_SCORE_PRIMARY':	nDistinctValues=5,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 20:'GLEASON_SCORE_SECONDARY':	nDistinctValues=4,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 21:'HIGHEST_GLEASON_SCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 22:'GLEASON_SCORE':	nDistinctValues=5,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 23:'PSA_RESULT_PREOP':	nDistinctValues=142,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 24:'DAYS_TO_PREOP_PSA':	nDistinctValues=142,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 25:'PSA_VALUE':	nDistinctValues=57,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 26:'DAYS_TO_PSA':	nDistinctValues=207,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 27:'RACE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 28:'ETHNICITY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 29:'BATCH.NUMBER':	nDistinctValues=16,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                       "PATHOLOGY.T.STAGE"        
 [3] "PATHOLOGY.N.STAGE"         "HISTOLOGICAL.TYPE"        
 [5] "COMPLETENESS.OF.RESECTION" "NUMBER.OF.LYMPH.NODES"    
 [7] "GLEASON_SCORE_COMBINED"    "GLEASON_SCORE_PRIMARY"    
 [9] "GLEASON_SCORE_SECONDARY"   "GLEASON_SCORE"            
[11] "PSA_RESULT_PREOP"          "PSA_VALUE"                
[13] "RACE"                     
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "2"          
[1] "PATHOLOGY.N" "3"          
Output Data has 271 columns, 0 survival variables, and 13 non-survival variables.
AGE, nv=32, binary=FALSE, numeric=TRUE
PATHOLOGY.T.STAGE, nv=3, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T2  T3  T4 
128 136   5 
[1] "table(vv)"
vv
 T2  T3  T4 
128 136   5 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
 T2  T3  T4 
128 136   5 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


 T2  T3  T4 
128 136   5 
PATHOLOGY.N.STAGE, nv=2, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=2, binary=FALSE, numeric=FALSE
COMPLETENESS.OF.RESECTION, nv=4, binary=FALSE, numeric=FALSE
NUMBER.OF.LYMPH.NODES, nv=6, binary=FALSE, numeric=TRUE
GLEASON_SCORE_COMBINED, nv=6, binary=FALSE, numeric=TRUE
GLEASON_SCORE_PRIMARY, nv=5, binary=FALSE, numeric=TRUE
GLEASON_SCORE_SECONDARY, nv=4, binary=FALSE, numeric=TRUE
GLEASON_SCORE, nv=5, binary=FALSE, numeric=TRUE
PSA_RESULT_PREOP, nv=142, binary=FALSE, numeric=TRUE
PSA_VALUE, nv=57, binary=FALSE, numeric=TRUE
RACE, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1Q21.3) MUTATION ANALYSIS
D1V1, continuous
                               vv
clus                             T2  T3  T4
  AMP PEAK  1(1Q21.3) MUTATED     4  16   1
  AMP PEAK  1(1Q21.3) WILD-TYPE 124 120   4
D1V2, multiclass
    clus
vv   AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  T2                           4                           124
  T3                          16                           120
  T4                           1                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D1V3, binary
                               cls
clus                              0   1
  AMP PEAK  1(1Q21.3) MUTATED    16   3
  AMP PEAK  1(1Q21.3) WILD-TYPE 185  21
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1Q21.3) MUTATED     16    3
  AMP PEAK  1(1Q21.3) WILD-TYPE  185   21
   clus
vv  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  0                          16                           185
  1                           3                            21
[1] 2 2
[1] FALSE
D1V4, binary
                               cls
clus                              0   1
  AMP PEAK  1(1Q21.3) MUTATED     2  19
  AMP PEAK  1(1Q21.3) WILD-TYPE   3 247
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1Q21.3) MUTATED      2   19
  AMP PEAK  1(1Q21.3) WILD-TYPE    3  247
                                        clus
vv                                       AMP PEAK  1(1Q21.3) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                           2
  PROSTATE ADENOCARCINOMA ACINAR TYPE                             19
                                        clus
vv                                       AMP PEAK  1(1Q21.3) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                             3
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              247
[1] 2 2
[1] FALSE
                               vv
clus                             R0  R1  R2  RX
  AMP PEAK  1(1Q21.3) MUTATED    16   4   0   0
  AMP PEAK  1(1Q21.3) WILD-TYPE 176  53   3   6
D1V5, multiclass
    clus
vv   AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  R0                          16                           176
  R1                           4                            53
  R2                           0                             3
  RX                           0                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D1V6, continuous
D1V7, continuous
D1V8, continuous
D1V9, continuous
D1V10, continuous
D1V11, continuous
D1V12, continuous
                               vv
clus                            ASIAN BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  1(1Q21.3) MUTATED       0                         0    14
  AMP PEAK  1(1Q21.3) WILD-TYPE     2                         7   132
D1V13, multiclass
                           clus
vv                          AMP PEAK  1(1Q21.3) MUTATED
  ASIAN                                               0
  BLACK OR AFRICAN AMERICAN                           0
  WHITE                                              14
                           clus
vv                          AMP PEAK  1(1Q21.3) WILD-TYPE
  ASIAN                                                 2
  BLACK OR AFRICAN AMERICAN                             7
  WHITE                                               132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(3Q21.3) MUTATION ANALYSIS
D2V1, continuous
                               vv
clus                             T2  T3  T4
  AMP PEAK  2(3Q21.3) MUTATED    11  18   3
  AMP PEAK  2(3Q21.3) WILD-TYPE 117 118   2
D2V2, multiclass
    clus
vv   AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE
  T2                          11                           117
  T3                          18                           118
  T4                           3                             2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D2V3, binary
                               cls
clus                              0   1
  AMP PEAK  2(3Q21.3) MUTATED    26   4
  AMP PEAK  2(3Q21.3) WILD-TYPE 175  20
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(3Q21.3) MUTATED     26    4
  AMP PEAK  2(3Q21.3) WILD-TYPE  175   20
   clus
vv  AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE
  0                          26                           175
  1                           4                            20
[1] 2 2
[1] FALSE
D2V4, binary
                               cls
clus                              0   1
  AMP PEAK  2(3Q21.3) MUTATED     0  32
  AMP PEAK  2(3Q21.3) WILD-TYPE   5 234
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(3Q21.3) MUTATED      0   32
  AMP PEAK  2(3Q21.3) WILD-TYPE    5  234
                                        clus
vv                                       AMP PEAK  2(3Q21.3) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                           0
  PROSTATE ADENOCARCINOMA ACINAR TYPE                             32
                                        clus
vv                                       AMP PEAK  2(3Q21.3) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                             5
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              234
[1] 2 2
[1] FALSE
                               vv
clus                             R0  R1  R2  RX
  AMP PEAK  2(3Q21.3) MUTATED    19   7   1   3
  AMP PEAK  2(3Q21.3) WILD-TYPE 173  50   2   3
D2V5, multiclass
    clus
vv   AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE
  R0                          19                           173
  R1                           7                            50
  R2                           1                             2
  RX                           3                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D2V6, continuous
D2V7, continuous
D2V8, continuous
D2V9, continuous
D2V10, continuous
D2V11, continuous
D2V12, continuous
                               vv
clus                            ASIAN BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  2(3Q21.3) MUTATED       0                         1    16
  AMP PEAK  2(3Q21.3) WILD-TYPE     2                         6   130
D2V13, multiclass
                           clus
vv                          AMP PEAK  2(3Q21.3) MUTATED
  ASIAN                                               0
  BLACK OR AFRICAN AMERICAN                           1
  WHITE                                              16
                           clus
vv                          AMP PEAK  2(3Q21.3) WILD-TYPE
  ASIAN                                                 2
  BLACK OR AFRICAN AMERICAN                             6
  WHITE                                               130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(3Q26.2) MUTATION ANALYSIS
D3V1, continuous
                               vv
clus                             T2  T3  T4
  AMP PEAK  3(3Q26.2) MUTATED    15  22   3
  AMP PEAK  3(3Q26.2) WILD-TYPE 113 114   2
D3V2, multiclass
    clus
vv   AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  T2                          15                           113
  T3                          22                           114
  T4                           3                             2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D3V3, binary
                               cls
clus                              0   1
  AMP PEAK  3(3Q26.2) MUTATED    32   5
  AMP PEAK  3(3Q26.2) WILD-TYPE 169  19
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(3Q26.2) MUTATED     32    5
  AMP PEAK  3(3Q26.2) WILD-TYPE  169   19
   clus
vv  AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  0                          32                           169
  1                           5                            19
[1] 2 2
[1] FALSE
D3V4, binary
                               cls
clus                              0   1
  AMP PEAK  3(3Q26.2) MUTATED     1  39
  AMP PEAK  3(3Q26.2) WILD-TYPE   4 227
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(3Q26.2) MUTATED      1   39
  AMP PEAK  3(3Q26.2) WILD-TYPE    4  227
                                        clus
vv                                       AMP PEAK  3(3Q26.2) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                           1
  PROSTATE ADENOCARCINOMA ACINAR TYPE                             39
                                        clus
vv                                       AMP PEAK  3(3Q26.2) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                             4
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              227
[1] 2 2
[1] FALSE
                               vv
clus                             R0  R1  R2  RX
  AMP PEAK  3(3Q26.2) MUTATED    27   8   1   2
  AMP PEAK  3(3Q26.2) WILD-TYPE 165  49   2   4
D3V5, multiclass
    clus
vv   AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  R0                          27                           165
  R1                           8                            49
  R2                           1                             2
  RX                           2                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D3V6, continuous
D3V7, continuous
D3V8, continuous
D3V9, continuous
D3V10, continuous
D3V11, continuous
D3V12, continuous
                               vv
clus                            ASIAN BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  3(3Q26.2) MUTATED       0                         1    24
  AMP PEAK  3(3Q26.2) WILD-TYPE     2                         6   122
D3V13, multiclass
                           clus
vv                          AMP PEAK  3(3Q26.2) MUTATED
  ASIAN                                               0
  BLACK OR AFRICAN AMERICAN                           1
  WHITE                                              24
                           clus
vv                          AMP PEAK  3(3Q26.2) WILD-TYPE
  ASIAN                                                 2
  BLACK OR AFRICAN AMERICAN                             6
  WHITE                                               122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(4Q13.3) MUTATION ANALYSIS
D4V1, continuous
                               vv
clus                             T2  T3  T4
  AMP PEAK  4(4Q13.3) MUTATED     2   2   1
  AMP PEAK  4(4Q13.3) WILD-TYPE 126 134   4
D4V2, multiclass
    clus
vv   AMP PEAK  4(4Q13.3) MUTATED AMP PEAK  4(4Q13.3) WILD-TYPE
  T2                           2                           126
  T3                           2                           134
  T4                           1                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D4V3, binary
                               cls
clus                              0   1
  AMP PEAK  4(4Q13.3) MUTATED     4   1
  AMP PEAK  4(4Q13.3) WILD-TYPE 197  23
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(4Q13.3) MUTATED      4    1
  AMP PEAK  4(4Q13.3) WILD-TYPE  197   23
   clus
vv  AMP PEAK  4(4Q13.3) MUTATED AMP PEAK  4(4Q13.3) WILD-TYPE
  0                           4                           197
  1                           1                            23
[1] 2 2
[1] FALSE
D4V4, binary
                               cls
clus                              0   1
  AMP PEAK  4(4Q13.3) MUTATED     0   5
  AMP PEAK  4(4Q13.3) WILD-TYPE   5 261
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(4Q13.3) MUTATED      0    5
  AMP PEAK  4(4Q13.3) WILD-TYPE    5  261
                                        clus
vv                                       AMP PEAK  4(4Q13.3) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                           0
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              5
                                        clus
vv                                       AMP PEAK  4(4Q13.3) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                             5
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              261
[1] 2 2
[1] FALSE
                               vv
clus                             R0  R1  R2  RX
  AMP PEAK  4(4Q13.3) MUTATED     3   2   0   0
  AMP PEAK  4(4Q13.3) WILD-TYPE 189  55   3   6
D4V5, multiclass
    clus
vv   AMP PEAK  4(4Q13.3) MUTATED AMP PEAK  4(4Q13.3) WILD-TYPE
  R0                           3                           189
  R1                           2                            55
  R2                           0                             3
  RX                           0                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D4V6, continuous
D4V7, continuous
D4V8, continuous
D4V9, continuous
D4V10, continuous
D4V11, continuous
D4V12, continuous
                               vv
clus                            ASIAN BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  4(4Q13.3) MUTATED       0                         0     3
  AMP PEAK  4(4Q13.3) WILD-TYPE     2                         7   143
D4V13, multiclass
                           clus
vv                          AMP PEAK  4(4Q13.3) MUTATED
  ASIAN                                               0
  BLACK OR AFRICAN AMERICAN                           0
  WHITE                                               3
                           clus
vv                          AMP PEAK  4(4Q13.3) WILD-TYPE
  ASIAN                                                 2
  BLACK OR AFRICAN AMERICAN                             7
  WHITE                                               143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(5Q33.3) MUTATION ANALYSIS
D5V1, continuous
                               vv
clus                             T2  T3  T4
  AMP PEAK  5(5Q33.3) MUTATED     1   6   1
  AMP PEAK  5(5Q33.3) WILD-TYPE 127 130   4
D5V2, multiclass
    clus
vv   AMP PEAK  5(5Q33.3) MUTATED AMP PEAK  5(5Q33.3) WILD-TYPE
  T2                           1                           127
  T3                           6                           130
  T4                           1                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D5V3, binary
                               cls
clus                              0   1
  AMP PEAK  5(5Q33.3) MUTATED     6   2
  AMP PEAK  5(5Q33.3) WILD-TYPE 195  22
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(5Q33.3) MUTATED      6    2
  AMP PEAK  5(5Q33.3) WILD-TYPE  195   22
   clus
vv  AMP PEAK  5(5Q33.3) MUTATED AMP PEAK  5(5Q33.3) WILD-TYPE
  0                           6                           195
  1                           2                            22
[1] 2 2
[1] FALSE
D5V4, binary
                               cls
clus                              0   1
  AMP PEAK  5(5Q33.3) MUTATED     1   7
  AMP PEAK  5(5Q33.3) WILD-TYPE   4 259
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(5Q33.3) MUTATED      1    7
  AMP PEAK  5(5Q33.3) WILD-TYPE    4  259
                                        clus
vv                                       AMP PEAK  5(5Q33.3) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                           1
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              7
                                        clus
vv                                       AMP PEAK  5(5Q33.3) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                             4
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              259
[1] 2 2
[1] FALSE
                               vv
clus                             R0  R1  R2  RX
  AMP PEAK  5(5Q33.3) MUTATED     6   2   0   0
  AMP PEAK  5(5Q33.3) WILD-TYPE 186  55   3   6
D5V5, multiclass
    clus
vv   AMP PEAK  5(5Q33.3) MUTATED AMP PEAK  5(5Q33.3) WILD-TYPE
  R0                           6                           186
  R1                           2                            55
  R2                           0                             3
  RX                           0                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D5V6, continuous
D5V7, continuous
D5V8, continuous
D5V9, continuous
D5V10, continuous
D5V11, continuous
D5V12, continuous
                               vv
clus                            ASIAN BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  5(5Q33.3) MUTATED       0                         1     3
  AMP PEAK  5(5Q33.3) WILD-TYPE     2                         6   143
D5V13, multiclass
                           clus
vv                          AMP PEAK  5(5Q33.3) MUTATED
  ASIAN                                               0
  BLACK OR AFRICAN AMERICAN                           1
  WHITE                                               3
                           clus
vv                          AMP PEAK  5(5Q33.3) WILD-TYPE
  ASIAN                                                 2
  BLACK OR AFRICAN AMERICAN                             6
  WHITE                                               143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(7P14.3) MUTATION ANALYSIS
D6V1, continuous
                               vv
clus                             T2  T3  T4
  AMP PEAK  6(7P14.3) MUTATED    17  29   1
  AMP PEAK  6(7P14.3) WILD-TYPE 111 107   4
D6V2, multiclass
    clus
vv   AMP PEAK  6(7P14.3) MUTATED AMP PEAK  6(7P14.3) WILD-TYPE
  T2                          17                           111
  T3                          29                           107
  T4                           1                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D6V3, binary
                               cls
clus                              0   1
  AMP PEAK  6(7P14.3) MUTATED    34   5
  AMP PEAK  6(7P14.3) WILD-TYPE 167  19
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(7P14.3) MUTATED     34    5
  AMP PEAK  6(7P14.3) WILD-TYPE  167   19
   clus
vv  AMP PEAK  6(7P14.3) MUTATED AMP PEAK  6(7P14.3) WILD-TYPE
  0                          34                           167
  1                           5                            19
[1] 2 2
[1] FALSE
D6V4, binary
                               cls
clus                              0   1
  AMP PEAK  6(7P14.3) MUTATED     0  47
  AMP PEAK  6(7P14.3) WILD-TYPE   5 219
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(7P14.3) MUTATED      0   47
  AMP PEAK  6(7P14.3) WILD-TYPE    5  219
                                        clus
vv                                       AMP PEAK  6(7P14.3) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                           0
  PROSTATE ADENOCARCINOMA ACINAR TYPE                             47
                                        clus
vv                                       AMP PEAK  6(7P14.3) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                             5
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              219
[1] 2 2
[1] FALSE
                               vv
clus                             R0  R1  R2  RX
  AMP PEAK  6(7P14.3) MUTATED    27  16   0   1
  AMP PEAK  6(7P14.3) WILD-TYPE 165  41   3   5
D6V5, multiclass
    clus
vv   AMP PEAK  6(7P14.3) MUTATED AMP PEAK  6(7P14.3) WILD-TYPE
  R0                          27                           165
  R1                          16                            41
  R2                           0                             3
  RX                           1                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D6V6, continuous
D6V7, continuous
D6V8, continuous
D6V9, continuous
D6V10, continuous
D6V11, continuous
D6V12, continuous
                               vv
clus                            ASIAN BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  6(7P14.3) MUTATED       0                         1    29
  AMP PEAK  6(7P14.3) WILD-TYPE     2                         6   117
D6V13, multiclass
                           clus
vv                          AMP PEAK  6(7P14.3) MUTATED
  ASIAN                                               0
  BLACK OR AFRICAN AMERICAN                           1
  WHITE                                              29
                           clus
vv                          AMP PEAK  6(7P14.3) WILD-TYPE
  ASIAN                                                 2
  BLACK OR AFRICAN AMERICAN                             6
  WHITE                                               117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(8P11.23) MUTATION ANALYSIS
D7V1, continuous
                                vv
clus                              T2  T3  T4
  AMP PEAK  7(8P11.23) MUTATED    10  15   1
  AMP PEAK  7(8P11.23) WILD-TYPE 118 121   4
D7V2, multiclass
    clus
vv   AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE
  T2                           10                            118
  T3                           15                            121
  T4                            1                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D7V3, binary
                                cls
clus                               0   1
  AMP PEAK  7(8P11.23) MUTATED    20   3
  AMP PEAK  7(8P11.23) WILD-TYPE 181  21
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(8P11.23) MUTATED     20    3
  AMP PEAK  7(8P11.23) WILD-TYPE  181   21
   clus
vv  AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE
  0                           20                            181
  1                            3                             21
[1] 2 2
[1] FALSE
D7V4, binary
                                cls
clus                               0   1
  AMP PEAK  7(8P11.23) MUTATED     0  26
  AMP PEAK  7(8P11.23) WILD-TYPE   5 240
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(8P11.23) MUTATED      0   26
  AMP PEAK  7(8P11.23) WILD-TYPE    5  240
                                        clus
vv                                       AMP PEAK  7(8P11.23) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                            0
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              26
                                        clus
vv                                       AMP PEAK  7(8P11.23) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                              5
  PROSTATE ADENOCARCINOMA ACINAR TYPE                               240
[1] 2 2
[1] FALSE
                                vv
clus                              R0  R1  R2  RX
  AMP PEAK  7(8P11.23) MUTATED    18   6   0   0
  AMP PEAK  7(8P11.23) WILD-TYPE 174  51   3   6
D7V5, multiclass
    clus
vv   AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE
  R0                           18                            174
  R1                            6                             51
  R2                            0                              3
  RX                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D7V6, continuous
D7V7, continuous
D7V8, continuous
D7V9, continuous
D7V10, continuous
D7V11, continuous
D7V12, continuous
                                vv
clus                             ASIAN BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  7(8P11.23) MUTATED       0                         0    17
  AMP PEAK  7(8P11.23) WILD-TYPE     2                         7   129
D7V13, multiclass
                           clus
vv                          AMP PEAK  7(8P11.23) MUTATED
  ASIAN                                                0
  BLACK OR AFRICAN AMERICAN                            0
  WHITE                                               17
                           clus
vv                          AMP PEAK  7(8P11.23) WILD-TYPE
  ASIAN                                                  2
  BLACK OR AFRICAN AMERICAN                              7
  WHITE                                                129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(8Q24.21) MUTATION ANALYSIS
D8V1, continuous
                                vv
clus                              T2  T3  T4
  AMP PEAK  8(8Q24.21) MUTATED    20  42   2
  AMP PEAK  8(8Q24.21) WILD-TYPE 108  94   3
D8V2, multiclass
    clus
vv   AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  T2                           20                            108
  T3                           42                             94
  T4                            2                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D8V3, binary
                                cls
clus                               0   1
  AMP PEAK  8(8Q24.21) MUTATED    50  10
  AMP PEAK  8(8Q24.21) WILD-TYPE 151  14
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  8(8Q24.21) MUTATED     50   10
  AMP PEAK  8(8Q24.21) WILD-TYPE  151   14
   clus
vv  AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  0                           50                            151
  1                           10                             14
[1] 2 2
[1] FALSE
D8V4, binary
                                cls
clus                               0   1
  AMP PEAK  8(8Q24.21) MUTATED     1  63
  AMP PEAK  8(8Q24.21) WILD-TYPE   4 203
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  8(8Q24.21) MUTATED      1   63
  AMP PEAK  8(8Q24.21) WILD-TYPE    4  203
                                        clus
vv                                       AMP PEAK  8(8Q24.21) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                            1
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              63
                                        clus
vv                                       AMP PEAK  8(8Q24.21) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                              4
  PROSTATE ADENOCARCINOMA ACINAR TYPE                               203
[1] 2 2
[1] FALSE
                                vv
clus                              R0  R1  R2  RX
  AMP PEAK  8(8Q24.21) MUTATED    44  15   0   2
  AMP PEAK  8(8Q24.21) WILD-TYPE 148  42   3   4
D8V5, multiclass
    clus
vv   AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  R0                           44                            148
  R1                           15                             42
  R2                            0                              3
  RX                            2                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D8V6, continuous
D8V7, continuous
D8V8, continuous
D8V9, continuous
D8V10, continuous
D8V11, continuous
D8V12, continuous
                                vv
clus                             ASIAN BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  8(8Q24.21) MUTATED       0                         2    35
  AMP PEAK  8(8Q24.21) WILD-TYPE     2                         5   111
D8V13, multiclass
                           clus
vv                          AMP PEAK  8(8Q24.21) MUTATED
  ASIAN                                                0
  BLACK OR AFRICAN AMERICAN                            2
  WHITE                                               35
                           clus
vv                          AMP PEAK  8(8Q24.21) WILD-TYPE
  ASIAN                                                  2
  BLACK OR AFRICAN AMERICAN                              5
  WHITE                                                111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(9Q34.11) MUTATION ANALYSIS
D9V1, continuous
                                vv
clus                              T2  T3  T4
  AMP PEAK  9(9Q34.11) MUTATED     5  19   1
  AMP PEAK  9(9Q34.11) WILD-TYPE 123 117   4
D9V2, multiclass
    clus
vv   AMP PEAK  9(9Q34.11) MUTATED AMP PEAK  9(9Q34.11) WILD-TYPE
  T2                            5                            123
  T3                           19                            117
  T4                            1                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D9V3, binary
                                cls
clus                               0   1
  AMP PEAK  9(9Q34.11) MUTATED    15   8
  AMP PEAK  9(9Q34.11) WILD-TYPE 186  16
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  9(9Q34.11) MUTATED     15    8
  AMP PEAK  9(9Q34.11) WILD-TYPE  186   16
   clus
vv  AMP PEAK  9(9Q34.11) MUTATED AMP PEAK  9(9Q34.11) WILD-TYPE
  0                           15                            186
  1                            8                             16
[1] 2 2
[1] FALSE
D9V4, binary
                                cls
clus                               0   1
  AMP PEAK  9(9Q34.11) MUTATED     1  24
  AMP PEAK  9(9Q34.11) WILD-TYPE   4 242
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  9(9Q34.11) MUTATED      1   24
  AMP PEAK  9(9Q34.11) WILD-TYPE    4  242
                                        clus
vv                                       AMP PEAK  9(9Q34.11) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                            1
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              24
                                        clus
vv                                       AMP PEAK  9(9Q34.11) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                              4
  PROSTATE ADENOCARCINOMA ACINAR TYPE                               242
[1] 2 2
[1] FALSE
                                vv
clus                              R0  R1  R2  RX
  AMP PEAK  9(9Q34.11) MUTATED    17   7   0   0
  AMP PEAK  9(9Q34.11) WILD-TYPE 175  50   3   6
D9V5, multiclass
    clus
vv   AMP PEAK  9(9Q34.11) MUTATED AMP PEAK  9(9Q34.11) WILD-TYPE
  R0                           17                            175
  R1                            7                             50
  R2                            0                              3
  RX                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D9V6, continuous
D9V7, continuous
D9V8, continuous
D9V9, continuous
D9V10, continuous
D9V11, continuous
D9V12, continuous
                                vv
clus                             ASIAN BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK  9(9Q34.11) MUTATED       0                         1    12
  AMP PEAK  9(9Q34.11) WILD-TYPE     2                         6   134
D9V13, multiclass
                           clus
vv                          AMP PEAK  9(9Q34.11) MUTATED
  ASIAN                                                0
  BLACK OR AFRICAN AMERICAN                            1
  WHITE                                               12
                           clus
vv                          AMP PEAK  9(9Q34.11) WILD-TYPE
  ASIAN                                                  2
  BLACK OR AFRICAN AMERICAN                              6
  WHITE                                                134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(11Q13.2) MUTATION ANALYSIS
D10V1, continuous
                                vv
clus                              T2  T3  T4
  AMP PEAK 10(11Q13.2) MUTATED     1  12   1
  AMP PEAK 10(11Q13.2) WILD-TYPE 127 124   4
D10V2, multiclass
    clus
vv   AMP PEAK 10(11Q13.2) MUTATED AMP PEAK 10(11Q13.2) WILD-TYPE
  T2                            1                            127
  T3                           12                            124
  T4                            1                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D10V3, binary
                                cls
clus                               0   1
  AMP PEAK 10(11Q13.2) MUTATED     9   4
  AMP PEAK 10(11Q13.2) WILD-TYPE 192  20
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 10(11Q13.2) MUTATED      9    4
  AMP PEAK 10(11Q13.2) WILD-TYPE  192   20
   clus
vv  AMP PEAK 10(11Q13.2) MUTATED AMP PEAK 10(11Q13.2) WILD-TYPE
  0                            9                            192
  1                            4                             20
[1] 2 2
[1] FALSE
D10V4, binary
                                cls
clus                               0   1
  AMP PEAK 10(11Q13.2) MUTATED     1  13
  AMP PEAK 10(11Q13.2) WILD-TYPE   4 253
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 10(11Q13.2) MUTATED      1   13
  AMP PEAK 10(11Q13.2) WILD-TYPE    4  253
                                        clus
vv                                       AMP PEAK 10(11Q13.2) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                            1
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              13
                                        clus
vv                                       AMP PEAK 10(11Q13.2) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                              4
  PROSTATE ADENOCARCINOMA ACINAR TYPE                               253
[1] 2 2
[1] FALSE
                                vv
clus                              R0  R1  R2  RX
  AMP PEAK 10(11Q13.2) MUTATED    11   3   0   0
  AMP PEAK 10(11Q13.2) WILD-TYPE 181  54   3   6
D10V5, multiclass
    clus
vv   AMP PEAK 10(11Q13.2) MUTATED AMP PEAK 10(11Q13.2) WILD-TYPE
  R0                           11                            181
  R1                            3                             54
  R2                            0                              3
  RX                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D10V6, continuous
D10V7, continuous
D10V8, continuous
D10V9, continuous
D10V10, continuous
D10V11, continuous
D10V12, continuous
                                vv
clus                             ASIAN BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 10(11Q13.2) MUTATED       0                         1     6
  AMP PEAK 10(11Q13.2) WILD-TYPE     2                         6   140
D10V13, multiclass
                           clus
vv                          AMP PEAK 10(11Q13.2) MUTATED
  ASIAN                                                0
  BLACK OR AFRICAN AMERICAN                            1
  WHITE                                                6
                           clus
vv                          AMP PEAK 10(11Q13.2) WILD-TYPE
  ASIAN                                                  2
  BLACK OR AFRICAN AMERICAN                              6
  WHITE                                                140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(12Q23.1) MUTATION ANALYSIS
D11V1, continuous
                                vv
clus                              T2  T3  T4
  AMP PEAK 11(12Q23.1) MUTATED     2   8   0
  AMP PEAK 11(12Q23.1) WILD-TYPE 126 128   5
D11V2, multiclass
    clus
vv   AMP PEAK 11(12Q23.1) MUTATED AMP PEAK 11(12Q23.1) WILD-TYPE
  T2                            2                            126
  T3                            8                            128
  T4                            0                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D11V3, binary
                                cls
clus                               0   1
  AMP PEAK 11(12Q23.1) MUTATED     5   4
  AMP PEAK 11(12Q23.1) WILD-TYPE 196  20
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 11(12Q23.1) MUTATED      5    4
  AMP PEAK 11(12Q23.1) WILD-TYPE  196   20
   clus
vv  AMP PEAK 11(12Q23.1) MUTATED AMP PEAK 11(12Q23.1) WILD-TYPE
  0                            5                            196
  1                            4                             20
[1] 2 2
[1] FALSE
D11V4, binary
                                cls
clus                               0   1
  AMP PEAK 11(12Q23.1) MUTATED     0  10
  AMP PEAK 11(12Q23.1) WILD-TYPE   5 256
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 11(12Q23.1) MUTATED      0   10
  AMP PEAK 11(12Q23.1) WILD-TYPE    5  256
                                        clus
vv                                       AMP PEAK 11(12Q23.1) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                            0
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              10
                                        clus
vv                                       AMP PEAK 11(12Q23.1) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                              5
  PROSTATE ADENOCARCINOMA ACINAR TYPE                               256
[1] 2 2
[1] FALSE
                                vv
clus                              R0  R1  R2  RX
  AMP PEAK 11(12Q23.1) MUTATED     7   3   0   0
  AMP PEAK 11(12Q23.1) WILD-TYPE 185  54   3   6
D11V5, multiclass
    clus
vv   AMP PEAK 11(12Q23.1) MUTATED AMP PEAK 11(12Q23.1) WILD-TYPE
  R0                            7                            185
  R1                            3                             54
  R2                            0                              3
  RX                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D11V6, continuous
D11V7, continuous
D11V8, continuous
D11V9, continuous
D11V10, continuous
D11V11, continuous
D11V12, continuous
                                vv
clus                             ASIAN BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 11(12Q23.1) MUTATED       0                         0     6
  AMP PEAK 11(12Q23.1) WILD-TYPE     2                         7   140
D11V13, multiclass
                           clus
vv                          AMP PEAK 11(12Q23.1) MUTATED
  ASIAN                                                0
  BLACK OR AFRICAN AMERICAN                            0
  WHITE                                                6
                           clus
vv                          AMP PEAK 11(12Q23.1) WILD-TYPE
  ASIAN                                                  2
  BLACK OR AFRICAN AMERICAN                              7
  WHITE                                                140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(13Q12.11) MUTATION ANALYSIS
D12V1, continuous
                                 vv
clus                               T2  T3  T4
  AMP PEAK 12(13Q12.11) MUTATED     4   7   1
  AMP PEAK 12(13Q12.11) WILD-TYPE 124 129   4
D12V2, multiclass
    clus
vv   AMP PEAK 12(13Q12.11) MUTATED AMP PEAK 12(13Q12.11) WILD-TYPE
  T2                             4                             124
  T3                             7                             129
  T4                             1                               4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D12V3, binary
                                 cls
clus                                0   1
  AMP PEAK 12(13Q12.11) MUTATED     8   2
  AMP PEAK 12(13Q12.11) WILD-TYPE 193  22
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 12(13Q12.11) MUTATED      8    2
  AMP PEAK 12(13Q12.11) WILD-TYPE  193   22
   clus
vv  AMP PEAK 12(13Q12.11) MUTATED AMP PEAK 12(13Q12.11) WILD-TYPE
  0                             8                             193
  1                             2                              22
[1] 2 2
[1] FALSE
D12V4, binary
                                 cls
clus                                0   1
  AMP PEAK 12(13Q12.11) MUTATED     1  11
  AMP PEAK 12(13Q12.11) WILD-TYPE   4 255
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 12(13Q12.11) MUTATED      1   11
  AMP PEAK 12(13Q12.11) WILD-TYPE    4  255
                                        clus
vv                                       AMP PEAK 12(13Q12.11) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                             1
  PROSTATE ADENOCARCINOMA ACINAR TYPE                               11
                                        clus
vv                                       AMP PEAK 12(13Q12.11) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                               4
  PROSTATE ADENOCARCINOMA ACINAR TYPE                                255
[1] 2 2
[1] FALSE
                                 vv
clus                               R0  R1  R2  RX
  AMP PEAK 12(13Q12.11) MUTATED     8   3   0   0
  AMP PEAK 12(13Q12.11) WILD-TYPE 184  54   3   6
D12V5, multiclass
    clus
vv   AMP PEAK 12(13Q12.11) MUTATED AMP PEAK 12(13Q12.11) WILD-TYPE
  R0                             8                             184
  R1                             3                              54
  R2                             0                               3
  RX                             0                               6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D12V6, continuous
D12V7, continuous
D12V8, continuous
D12V9, continuous
D12V10, continuous
D12V11, continuous
D12V12, continuous
                                 vv
clus                              ASIAN BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 12(13Q12.11) MUTATED       0                         1     5
  AMP PEAK 12(13Q12.11) WILD-TYPE     2                         6   141
D12V13, multiclass
                           clus
vv                          AMP PEAK 12(13Q12.11) MUTATED
  ASIAN                                                 0
  BLACK OR AFRICAN AMERICAN                             1
  WHITE                                                 5
                           clus
vv                          AMP PEAK 12(13Q12.11) WILD-TYPE
  ASIAN                                                   2
  BLACK OR AFRICAN AMERICAN                               6
  WHITE                                                 141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(14Q21.1) MUTATION ANALYSIS
D13V1, continuous
                                vv
clus                              T2  T3  T4
  AMP PEAK 13(14Q21.1) MUTATED     5   9   0
  AMP PEAK 13(14Q21.1) WILD-TYPE 123 127   5
D13V2, multiclass
    clus
vv   AMP PEAK 13(14Q21.1) MUTATED AMP PEAK 13(14Q21.1) WILD-TYPE
  T2                            5                            123
  T3                            9                            127
  T4                            0                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D13V3, binary
                                cls
clus                               0   1
  AMP PEAK 13(14Q21.1) MUTATED    10   1
  AMP PEAK 13(14Q21.1) WILD-TYPE 191  23
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(14Q21.1) MUTATED     10    1
  AMP PEAK 13(14Q21.1) WILD-TYPE  191   23
   clus
vv  AMP PEAK 13(14Q21.1) MUTATED AMP PEAK 13(14Q21.1) WILD-TYPE
  0                           10                            191
  1                            1                             23
[1] 2 2
[1] FALSE
D13V4, binary
                                cls
clus                               0   1
  AMP PEAK 13(14Q21.1) MUTATED     1  13
  AMP PEAK 13(14Q21.1) WILD-TYPE   4 253
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(14Q21.1) MUTATED      1   13
  AMP PEAK 13(14Q21.1) WILD-TYPE    4  253
                                        clus
vv                                       AMP PEAK 13(14Q21.1) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                            1
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              13
                                        clus
vv                                       AMP PEAK 13(14Q21.1) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                              4
  PROSTATE ADENOCARCINOMA ACINAR TYPE                               253
[1] 2 2
[1] FALSE
                                vv
clus                              R0  R1  R2  RX
  AMP PEAK 13(14Q21.1) MUTATED    11   3   0   0
  AMP PEAK 13(14Q21.1) WILD-TYPE 181  54   3   6
D13V5, multiclass
    clus
vv   AMP PEAK 13(14Q21.1) MUTATED AMP PEAK 13(14Q21.1) WILD-TYPE
  R0                           11                            181
  R1                            3                             54
  R2                            0                              3
  RX                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D13V6, continuous
D13V7, continuous
D13V8, continuous
D13V9, continuous
D13V10, continuous
D13V11, continuous
D13V12, continuous
                                vv
clus                             ASIAN BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 13(14Q21.1) MUTATED       0                         0     7
  AMP PEAK 13(14Q21.1) WILD-TYPE     2                         7   139
D13V13, multiclass
                           clus
vv                          AMP PEAK 13(14Q21.1) MUTATED
  ASIAN                                                0
  BLACK OR AFRICAN AMERICAN                            0
  WHITE                                                7
                           clus
vv                          AMP PEAK 13(14Q21.1) WILD-TYPE
  ASIAN                                                  2
  BLACK OR AFRICAN AMERICAN                              7
  WHITE                                                139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(15Q11.2) MUTATION ANALYSIS
D14V1, continuous
                                vv
clus                              T2  T3  T4
  AMP PEAK 14(15Q11.2) MUTATED     3   2   0
  AMP PEAK 14(15Q11.2) WILD-TYPE 125 134   5
D14V2, multiclass
    clus
vv   AMP PEAK 14(15Q11.2) MUTATED AMP PEAK 14(15Q11.2) WILD-TYPE
  T2                            3                            125
  T3                            2                            134
  T4                            0                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D14V3, binary
                                cls
clus                               0   1
  AMP PEAK 14(15Q11.2) MUTATED     4   0
  AMP PEAK 14(15Q11.2) WILD-TYPE 197  24
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(15Q11.2) MUTATED      4    0
  AMP PEAK 14(15Q11.2) WILD-TYPE  197   24
   clus
vv  AMP PEAK 14(15Q11.2) MUTATED AMP PEAK 14(15Q11.2) WILD-TYPE
  0                            4                            197
  1                            0                             24
[1] 2 2
[1] FALSE
D14V4, binary
                                cls
clus                               0   1
  AMP PEAK 14(15Q11.2) MUTATED     0   5
  AMP PEAK 14(15Q11.2) WILD-TYPE   5 261
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(15Q11.2) MUTATED      0    5
  AMP PEAK 14(15Q11.2) WILD-TYPE    5  261
                                        clus
vv                                       AMP PEAK 14(15Q11.2) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                            0
  PROSTATE ADENOCARCINOMA ACINAR TYPE                               5
                                        clus
vv                                       AMP PEAK 14(15Q11.2) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                              5
  PROSTATE ADENOCARCINOMA ACINAR TYPE                               261
[1] 2 2
[1] FALSE
                                vv
clus                              R0  R1  R2  RX
  AMP PEAK 14(15Q11.2) MUTATED     5   0   0   0
  AMP PEAK 14(15Q11.2) WILD-TYPE 187  57   3   6
D14V5, multiclass
    clus
vv   AMP PEAK 14(15Q11.2) MUTATED AMP PEAK 14(15Q11.2) WILD-TYPE
  R0                            5                            187
  R1                            0                             57
  R2                            0                              3
  RX                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D14V6, continuous
D14V7, continuous
D14V8, continuous
D14V9, continuous
D14V10, continuous
D14V11, continuous
D14V12, continuous
                                vv
clus                             ASIAN BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 14(15Q11.2) MUTATED       0                         0     2
  AMP PEAK 14(15Q11.2) WILD-TYPE     2                         7   144
D14V13, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 14(15Q11.2) MUTATED"
clus
  AMP PEAK 14(15Q11.2) MUTATED AMP PEAK 14(15Q11.2) WILD-TYPE 
                             2                            153 
                    TCGA-CH-5737                     TCGA-CH-5738 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5746 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-CH-5748                     TCGA-CH-5750 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-CH-5751                     TCGA-CH-5752 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-CH-5753                     TCGA-CH-5754 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-CH-5761                     TCGA-CH-5762 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-CH-5763                     TCGA-CH-5764 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-CH-5765                     TCGA-CH-5766 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-CH-5767                     TCGA-CH-5768 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-CH-5769                     TCGA-CH-5771 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-CH-5772                     TCGA-CH-5788 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-CH-5789                     TCGA-CH-5790 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-CH-5791                     TCGA-CH-5792 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-CH-5794                     TCGA-EJ-5494 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-EJ-5495                     TCGA-EJ-5496 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-EJ-5497                     TCGA-EJ-5498 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-EJ-5499                     TCGA-EJ-5501 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-EJ-5503                     TCGA-EJ-5504 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-EJ-5505                     TCGA-EJ-5506 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-EJ-5507                     TCGA-EJ-5508 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-EJ-5509                     TCGA-EJ-5510 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-EJ-5511                     TCGA-EJ-5512 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-EJ-5515                     TCGA-EJ-5516 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-EJ-5517                     TCGA-EJ-5518 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-EJ-5519                     TCGA-EJ-5521 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-EJ-5522                     TCGA-EJ-5524 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-EJ-5525                     TCGA-EJ-5526 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-EJ-5527                     TCGA-EJ-5530 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-EJ-5531                     TCGA-EJ-5532 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-EJ-5542                     TCGA-EJ-7115 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-EJ-7123                     TCGA-EJ-7125 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-EJ-7317                     TCGA-EJ-7321 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-EJ-7327                     TCGA-EJ-7330 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-EJ-7789                     TCGA-EJ-7791 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-EJ-7792                     TCGA-EJ-7793 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-EJ-7794                     TCGA-EJ-7797 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-FC-7708                     TCGA-FC-7961 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-G9-6329                     TCGA-G9-6332 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-G9-6333                     TCGA-G9-6336 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-G9-6338                     TCGA-G9-6342 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-G9-6343                     TCGA-G9-6348 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-G9-6351                     TCGA-G9-6353 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-G9-6356                     TCGA-G9-6361 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-G9-6362                     TCGA-G9-6363 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-G9-6364                     TCGA-G9-6365 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-G9-6366                     TCGA-G9-6367 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-G9-6369                     TCGA-G9-6370 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-G9-6371                     TCGA-G9-6373 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-G9-6377                     TCGA-G9-6378 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-G9-6384                     TCGA-G9-6385 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-G9-6494                     TCGA-G9-6496 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-G9-6499                     TCGA-H9-7775 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-HC-7075                     TCGA-HC-7077 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-HC-7078                     TCGA-HC-7079 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-HC-7080                     TCGA-HC-7081 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-HC-7209                     TCGA-HC-7210 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-HC-7211                     TCGA-HC-7212 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-HC-7213                     TCGA-HC-7230 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-HC-7231                     TCGA-HC-7232 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-HC-7233                     TCGA-HC-7736 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-HC-7737                     TCGA-HC-7738 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-HC-7740                     TCGA-HC-7742 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-HC-7744                     TCGA-HC-7745 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-HC-7747                     TCGA-HC-7748 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-HC-7749                     TCGA-HC-7750 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-HC-7752                     TCGA-HC-7818 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-HC-7819                     TCGA-HC-7820 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-HC-7821                     TCGA-HI-7168 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"AMP PEAK 14(15Q11.2) WILD-TYPE" "AMP PEAK 14(15Q11.2) WILD-TYPE" 
                    TCGA-HI-7171 
"AMP PEAK 14(15Q11.2) WILD-TYPE" 

Clustering(15) Variable = AMP PEAK 15(16Q11.2) MUTATION ANALYSIS
D15V1, continuous
                                vv
clus                              T2  T3  T4
  AMP PEAK 15(16Q11.2) MUTATED     2  10   1
  AMP PEAK 15(16Q11.2) WILD-TYPE 126 126   4
D15V2, multiclass
    clus
vv   AMP PEAK 15(16Q11.2) MUTATED AMP PEAK 15(16Q11.2) WILD-TYPE
  T2                            2                            126
  T3                           10                            126
  T4                            1                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D15V3, binary
                                cls
clus                               0   1
  AMP PEAK 15(16Q11.2) MUTATED    10   1
  AMP PEAK 15(16Q11.2) WILD-TYPE 191  23
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(16Q11.2) MUTATED     10    1
  AMP PEAK 15(16Q11.2) WILD-TYPE  191   23
   clus
vv  AMP PEAK 15(16Q11.2) MUTATED AMP PEAK 15(16Q11.2) WILD-TYPE
  0                           10                            191
  1                            1                             23
[1] 2 2
[1] FALSE
D15V4, binary
                                cls
clus                               0   1
  AMP PEAK 15(16Q11.2) MUTATED     0  13
  AMP PEAK 15(16Q11.2) WILD-TYPE   5 253
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(16Q11.2) MUTATED      0   13
  AMP PEAK 15(16Q11.2) WILD-TYPE    5  253
                                        clus
vv                                       AMP PEAK 15(16Q11.2) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                            0
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              13
                                        clus
vv                                       AMP PEAK 15(16Q11.2) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                              5
  PROSTATE ADENOCARCINOMA ACINAR TYPE                               253
[1] 2 2
[1] FALSE
                                vv
clus                              R0  R1  R2  RX
  AMP PEAK 15(16Q11.2) MUTATED    10   2   0   1
  AMP PEAK 15(16Q11.2) WILD-TYPE 182  55   3   5
D15V5, multiclass
    clus
vv   AMP PEAK 15(16Q11.2) MUTATED AMP PEAK 15(16Q11.2) WILD-TYPE
  R0                           10                            182
  R1                            2                             55
  R2                            0                              3
  RX                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D15V6, continuous
D15V7, continuous
D15V8, continuous
D15V9, continuous
D15V10, continuous
D15V11, continuous
D15V12, continuous
                                vv
clus                             ASIAN BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 15(16Q11.2) MUTATED       0                         0     9
  AMP PEAK 15(16Q11.2) WILD-TYPE     2                         7   137
D15V13, multiclass
                           clus
vv                          AMP PEAK 15(16Q11.2) MUTATED
  ASIAN                                                0
  BLACK OR AFRICAN AMERICAN                            0
  WHITE                                                9
                           clus
vv                          AMP PEAK 15(16Q11.2) WILD-TYPE
  ASIAN                                                  2
  BLACK OR AFRICAN AMERICAN                              7
  WHITE                                                137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(17Q23.2) MUTATION ANALYSIS
D16V1, continuous
                                vv
clus                              T2  T3  T4
  AMP PEAK 16(17Q23.2) MUTATED     2   7   0
  AMP PEAK 16(17Q23.2) WILD-TYPE 126 129   5
D16V2, multiclass
    clus
vv   AMP PEAK 16(17Q23.2) MUTATED AMP PEAK 16(17Q23.2) WILD-TYPE
  T2                            2                            126
  T3                            7                            129
  T4                            0                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D16V3, binary
                                cls
clus                               0   1
  AMP PEAK 16(17Q23.2) MUTATED     8   1
  AMP PEAK 16(17Q23.2) WILD-TYPE 193  23
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(17Q23.2) MUTATED      8    1
  AMP PEAK 16(17Q23.2) WILD-TYPE  193   23
   clus
vv  AMP PEAK 16(17Q23.2) MUTATED AMP PEAK 16(17Q23.2) WILD-TYPE
  0                            8                            193
  1                            1                             23
[1] 2 2
[1] FALSE
D16V4, binary
                                cls
clus                               0   1
  AMP PEAK 16(17Q23.2) MUTATED     1   8
  AMP PEAK 16(17Q23.2) WILD-TYPE   4 258
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(17Q23.2) MUTATED      1    8
  AMP PEAK 16(17Q23.2) WILD-TYPE    4  258
                                        clus
vv                                       AMP PEAK 16(17Q23.2) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                            1
  PROSTATE ADENOCARCINOMA ACINAR TYPE                               8
                                        clus
vv                                       AMP PEAK 16(17Q23.2) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                              4
  PROSTATE ADENOCARCINOMA ACINAR TYPE                               258
[1] 2 2
[1] FALSE
                                vv
clus                              R0  R1  R2  RX
  AMP PEAK 16(17Q23.2) MUTATED     9   0   0   0
  AMP PEAK 16(17Q23.2) WILD-TYPE 183  57   3   6
D16V5, multiclass
    clus
vv   AMP PEAK 16(17Q23.2) MUTATED AMP PEAK 16(17Q23.2) WILD-TYPE
  R0                            9                            183
  R1                            0                             57
  R2                            0                              3
  RX                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D16V6, continuous
D16V7, continuous
D16V8, continuous
D16V9, continuous
D16V10, continuous
D16V11, continuous
D16V12, continuous
                                vv
clus                             ASIAN BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 16(17Q23.2) MUTATED       0                         0     6
  AMP PEAK 16(17Q23.2) WILD-TYPE     2                         7   140
D16V13, multiclass
                           clus
vv                          AMP PEAK 16(17Q23.2) MUTATED
  ASIAN                                                0
  BLACK OR AFRICAN AMERICAN                            0
  WHITE                                                6
                           clus
vv                          AMP PEAK 16(17Q23.2) WILD-TYPE
  ASIAN                                                  2
  BLACK OR AFRICAN AMERICAN                              7
  WHITE                                                140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(18Q21.31) MUTATION ANALYSIS
D17V1, continuous
                                 vv
clus                               T2  T3  T4
  AMP PEAK 17(18Q21.31) MUTATED     0   6   0
  AMP PEAK 17(18Q21.31) WILD-TYPE 128 130   5
D17V2, multiclass
    clus
vv   AMP PEAK 17(18Q21.31) MUTATED AMP PEAK 17(18Q21.31) WILD-TYPE
  T2                             0                             128
  T3                             6                             130
  T4                             0                               5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D17V3, binary
                                 cls
clus                                0   1
  AMP PEAK 17(18Q21.31) MUTATED     6   0
  AMP PEAK 17(18Q21.31) WILD-TYPE 195  24
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 17(18Q21.31) MUTATED      6    0
  AMP PEAK 17(18Q21.31) WILD-TYPE  195   24
   clus
vv  AMP PEAK 17(18Q21.31) MUTATED AMP PEAK 17(18Q21.31) WILD-TYPE
  0                             6                             195
  1                             0                              24
[1] 2 2
[1] FALSE
D17V4, binary
                                 cls
clus                                0   1
  AMP PEAK 17(18Q21.31) MUTATED     1   5
  AMP PEAK 17(18Q21.31) WILD-TYPE   4 261
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 17(18Q21.31) MUTATED      1    5
  AMP PEAK 17(18Q21.31) WILD-TYPE    4  261
                                        clus
vv                                       AMP PEAK 17(18Q21.31) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                             1
  PROSTATE ADENOCARCINOMA ACINAR TYPE                                5
                                        clus
vv                                       AMP PEAK 17(18Q21.31) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                               4
  PROSTATE ADENOCARCINOMA ACINAR TYPE                                261
[1] 2 2
[1] FALSE
                                 vv
clus                               R0  R1  R2  RX
  AMP PEAK 17(18Q21.31) MUTATED     3   3   0   0
  AMP PEAK 17(18Q21.31) WILD-TYPE 189  54   3   6
D17V5, multiclass
    clus
vv   AMP PEAK 17(18Q21.31) MUTATED AMP PEAK 17(18Q21.31) WILD-TYPE
  R0                             3                             189
  R1                             3                              54
  R2                             0                               3
  RX                             0                               6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D17V6, continuous
D17V7, continuous
D17V8, continuous
D17V9, continuous
D17V10, continuous
D17V11, continuous
D17V12, continuous
                                 vv
clus                              ASIAN BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 17(18Q21.31) MUTATED       0                         0     3
  AMP PEAK 17(18Q21.31) WILD-TYPE     2                         7   143
D17V13, multiclass
                           clus
vv                          AMP PEAK 17(18Q21.31) MUTATED
  ASIAN                                                 0
  BLACK OR AFRICAN AMERICAN                             0
  WHITE                                                 3
                           clus
vv                          AMP PEAK 17(18Q21.31) WILD-TYPE
  ASIAN                                                   2
  BLACK OR AFRICAN AMERICAN                               7
  WHITE                                                 143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(19Q13.43) MUTATION ANALYSIS
D18V1, continuous
                                 vv
clus                               T2  T3  T4
  AMP PEAK 18(19Q13.43) MUTATED     0   4   1
  AMP PEAK 18(19Q13.43) WILD-TYPE 128 132   4
D18V2, multiclass
    clus
vv   AMP PEAK 18(19Q13.43) MUTATED AMP PEAK 18(19Q13.43) WILD-TYPE
  T2                             0                             128
  T3                             4                             132
  T4                             1                               4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D18V3, binary
                                 cls
clus                                0   1
  AMP PEAK 18(19Q13.43) MUTATED     5   0
  AMP PEAK 18(19Q13.43) WILD-TYPE 196  24
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 18(19Q13.43) MUTATED      5    0
  AMP PEAK 18(19Q13.43) WILD-TYPE  196   24
   clus
vv  AMP PEAK 18(19Q13.43) MUTATED AMP PEAK 18(19Q13.43) WILD-TYPE
  0                             5                             196
  1                             0                              24
[1] 2 2
[1] FALSE
D18V4, binary
                                 cls
clus                                0   1
  AMP PEAK 18(19Q13.43) MUTATED     1   4
  AMP PEAK 18(19Q13.43) WILD-TYPE   4 262
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 18(19Q13.43) MUTATED      1    4
  AMP PEAK 18(19Q13.43) WILD-TYPE    4  262
                                        clus
vv                                       AMP PEAK 18(19Q13.43) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                             1
  PROSTATE ADENOCARCINOMA ACINAR TYPE                                4
                                        clus
vv                                       AMP PEAK 18(19Q13.43) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                               4
  PROSTATE ADENOCARCINOMA ACINAR TYPE                                262
[1] 2 2
[1] FALSE
                                 vv
clus                               R0  R1  R2  RX
  AMP PEAK 18(19Q13.43) MUTATED     4   1   0   0
  AMP PEAK 18(19Q13.43) WILD-TYPE 188  56   3   6
D18V5, multiclass
    clus
vv   AMP PEAK 18(19Q13.43) MUTATED AMP PEAK 18(19Q13.43) WILD-TYPE
  R0                             4                             188
  R1                             1                              56
  R2                             0                               3
  RX                             0                               6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D18V6, continuous
D18V7, continuous
D18V8, continuous
D18V9, continuous
D18V10, continuous
D18V11, continuous
D18V12, continuous
                                 vv
clus                              ASIAN BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 18(19Q13.43) MUTATED       0                         0     4
  AMP PEAK 18(19Q13.43) WILD-TYPE     2                         7   142
D18V13, multiclass
                           clus
vv                          AMP PEAK 18(19Q13.43) MUTATED
  ASIAN                                                 0
  BLACK OR AFRICAN AMERICAN                             0
  WHITE                                                 4
                           clus
vv                          AMP PEAK 18(19Q13.43) WILD-TYPE
  ASIAN                                                   2
  BLACK OR AFRICAN AMERICAN                               7
  WHITE                                                 142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(20Q13.2) MUTATION ANALYSIS
D19V1, continuous
                                vv
clus                              T2  T3  T4
  AMP PEAK 19(20Q13.2) MUTATED     1  11   2
  AMP PEAK 19(20Q13.2) WILD-TYPE 127 125   3
D19V2, multiclass
    clus
vv   AMP PEAK 19(20Q13.2) MUTATED AMP PEAK 19(20Q13.2) WILD-TYPE
  T2                            1                            127
  T3                           11                            125
  T4                            2                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D19V3, binary
                                cls
clus                               0   1
  AMP PEAK 19(20Q13.2) MUTATED    14   0
  AMP PEAK 19(20Q13.2) WILD-TYPE 187  24
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(20Q13.2) MUTATED     14    0
  AMP PEAK 19(20Q13.2) WILD-TYPE  187   24
   clus
vv  AMP PEAK 19(20Q13.2) MUTATED AMP PEAK 19(20Q13.2) WILD-TYPE
  0                           14                            187
  1                            0                             24
[1] 2 2
[1] FALSE
D19V4, binary
                                cls
clus                               0   1
  AMP PEAK 19(20Q13.2) MUTATED     0  14
  AMP PEAK 19(20Q13.2) WILD-TYPE   5 252
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(20Q13.2) MUTATED      0   14
  AMP PEAK 19(20Q13.2) WILD-TYPE    5  252
                                        clus
vv                                       AMP PEAK 19(20Q13.2) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                            0
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              14
                                        clus
vv                                       AMP PEAK 19(20Q13.2) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                              5
  PROSTATE ADENOCARCINOMA ACINAR TYPE                               252
[1] 2 2
[1] FALSE
                                vv
clus                              R0  R1  R2  RX
  AMP PEAK 19(20Q13.2) MUTATED     7   6   0   0
  AMP PEAK 19(20Q13.2) WILD-TYPE 185  51   3   6
D19V5, multiclass
    clus
vv   AMP PEAK 19(20Q13.2) MUTATED AMP PEAK 19(20Q13.2) WILD-TYPE
  R0                            7                            185
  R1                            6                             51
  R2                            0                              3
  RX                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D19V6, continuous
D19V7, continuous
D19V8, continuous
D19V9, continuous
D19V10, continuous
D19V11, continuous
D19V12, continuous
                                vv
clus                             ASIAN BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 19(20Q13.2) MUTATED       0                         0    10
  AMP PEAK 19(20Q13.2) WILD-TYPE     2                         7   136
D19V13, multiclass
                           clus
vv                          AMP PEAK 19(20Q13.2) MUTATED
  ASIAN                                                0
  BLACK OR AFRICAN AMERICAN                            0
  WHITE                                               10
                           clus
vv                          AMP PEAK 19(20Q13.2) WILD-TYPE
  ASIAN                                                  2
  BLACK OR AFRICAN AMERICAN                              7
  WHITE                                                136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(XP22.2) MUTATION ANALYSIS
D20V1, continuous
                               vv
clus                             T2  T3  T4
  AMP PEAK 20(XP22.2) MUTATED     1   7   0
  AMP PEAK 20(XP22.2) WILD-TYPE 127 129   5
D20V2, multiclass
    clus
vv   AMP PEAK 20(XP22.2) MUTATED AMP PEAK 20(XP22.2) WILD-TYPE
  T2                           1                           127
  T3                           7                           129
  T4                           0                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D20V3, binary
                               cls
clus                              0   1
  AMP PEAK 20(XP22.2) MUTATED     7   1
  AMP PEAK 20(XP22.2) WILD-TYPE 194  23
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 20(XP22.2) MUTATED      7    1
  AMP PEAK 20(XP22.2) WILD-TYPE  194   23
   clus
vv  AMP PEAK 20(XP22.2) MUTATED AMP PEAK 20(XP22.2) WILD-TYPE
  0                           7                           194
  1                           1                            23
[1] 2 2
[1] FALSE
D20V4, binary
                               cls
clus                              0   1
  AMP PEAK 20(XP22.2) MUTATED     1   7
  AMP PEAK 20(XP22.2) WILD-TYPE   4 259
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 20(XP22.2) MUTATED      1    7
  AMP PEAK 20(XP22.2) WILD-TYPE    4  259
                                        clus
vv                                       AMP PEAK 20(XP22.2) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                           1
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              7
                                        clus
vv                                       AMP PEAK 20(XP22.2) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                             4
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              259
[1] 2 2
[1] FALSE
                               vv
clus                             R0  R1  R2  RX
  AMP PEAK 20(XP22.2) MUTATED     5   2   0   0
  AMP PEAK 20(XP22.2) WILD-TYPE 187  55   3   6
D20V5, multiclass
    clus
vv   AMP PEAK 20(XP22.2) MUTATED AMP PEAK 20(XP22.2) WILD-TYPE
  R0                           5                           187
  R1                           2                            55
  R2                           0                             3
  RX                           0                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D20V6, continuous
D20V7, continuous
D20V8, continuous
D20V9, continuous
D20V10, continuous
D20V11, continuous
D20V12, continuous
                               vv
clus                            ASIAN BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 20(XP22.2) MUTATED       0                         1     2
  AMP PEAK 20(XP22.2) WILD-TYPE     2                         6   144
D20V13, multiclass
                           clus
vv                          AMP PEAK 20(XP22.2) MUTATED
  ASIAN                                               0
  BLACK OR AFRICAN AMERICAN                           1
  WHITE                                               2
                           clus
vv                          AMP PEAK 20(XP22.2) WILD-TYPE
  ASIAN                                                 2
  BLACK OR AFRICAN AMERICAN                             6
  WHITE                                               144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(XP22.11) MUTATION ANALYSIS
D21V1, continuous
                                vv
clus                              T2  T3  T4
  AMP PEAK 21(XP22.11) MUTATED     2   7   0
  AMP PEAK 21(XP22.11) WILD-TYPE 126 129   5
D21V2, multiclass
    clus
vv   AMP PEAK 21(XP22.11) MUTATED AMP PEAK 21(XP22.11) WILD-TYPE
  T2                            2                            126
  T3                            7                            129
  T4                            0                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D21V3, binary
                                cls
clus                               0   1
  AMP PEAK 21(XP22.11) MUTATED     8   1
  AMP PEAK 21(XP22.11) WILD-TYPE 193  23
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 21(XP22.11) MUTATED      8    1
  AMP PEAK 21(XP22.11) WILD-TYPE  193   23
   clus
vv  AMP PEAK 21(XP22.11) MUTATED AMP PEAK 21(XP22.11) WILD-TYPE
  0                            8                            193
  1                            1                             23
[1] 2 2
[1] FALSE
D21V4, binary
                                cls
clus                               0   1
  AMP PEAK 21(XP22.11) MUTATED     2   7
  AMP PEAK 21(XP22.11) WILD-TYPE   3 259
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 21(XP22.11) MUTATED      2    7
  AMP PEAK 21(XP22.11) WILD-TYPE    3  259
                                        clus
vv                                       AMP PEAK 21(XP22.11) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                            2
  PROSTATE ADENOCARCINOMA ACINAR TYPE                               7
                                        clus
vv                                       AMP PEAK 21(XP22.11) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                              3
  PROSTATE ADENOCARCINOMA ACINAR TYPE                               259
[1] 2 2
[1] FALSE
                                vv
clus                              R0  R1  R2  RX
  AMP PEAK 21(XP22.11) MUTATED     6   1   0   0
  AMP PEAK 21(XP22.11) WILD-TYPE 186  56   3   6
D21V5, multiclass
    clus
vv   AMP PEAK 21(XP22.11) MUTATED AMP PEAK 21(XP22.11) WILD-TYPE
  R0                            6                            186
  R1                            1                             56
  R2                            0                              3
  RX                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D21V6, continuous
D21V7, continuous
D21V8, continuous
D21V9, continuous
D21V10, continuous
D21V11, continuous
D21V12, continuous
                                vv
clus                             ASIAN BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 21(XP22.11) MUTATED       0                         1     4
  AMP PEAK 21(XP22.11) WILD-TYPE     2                         6   142
D21V13, multiclass
                           clus
vv                          AMP PEAK 21(XP22.11) MUTATED
  ASIAN                                                0
  BLACK OR AFRICAN AMERICAN                            1
  WHITE                                                4
                           clus
vv                          AMP PEAK 21(XP22.11) WILD-TYPE
  ASIAN                                                  2
  BLACK OR AFRICAN AMERICAN                              6
  WHITE                                                142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(XP22.11) MUTATION ANALYSIS
D22V1, continuous
                                vv
clus                              T2  T3  T4
  AMP PEAK 22(XP22.11) MUTATED     2   7   0
  AMP PEAK 22(XP22.11) WILD-TYPE 126 129   5
D22V2, multiclass
    clus
vv   AMP PEAK 22(XP22.11) MUTATED AMP PEAK 22(XP22.11) WILD-TYPE
  T2                            2                            126
  T3                            7                            129
  T4                            0                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D22V3, binary
                                cls
clus                               0   1
  AMP PEAK 22(XP22.11) MUTATED     8   1
  AMP PEAK 22(XP22.11) WILD-TYPE 193  23
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 22(XP22.11) MUTATED      8    1
  AMP PEAK 22(XP22.11) WILD-TYPE  193   23
   clus
vv  AMP PEAK 22(XP22.11) MUTATED AMP PEAK 22(XP22.11) WILD-TYPE
  0                            8                            193
  1                            1                             23
[1] 2 2
[1] FALSE
D22V4, binary
                                cls
clus                               0   1
  AMP PEAK 22(XP22.11) MUTATED     2   7
  AMP PEAK 22(XP22.11) WILD-TYPE   3 259
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 22(XP22.11) MUTATED      2    7
  AMP PEAK 22(XP22.11) WILD-TYPE    3  259
                                        clus
vv                                       AMP PEAK 22(XP22.11) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                            2
  PROSTATE ADENOCARCINOMA ACINAR TYPE                               7
                                        clus
vv                                       AMP PEAK 22(XP22.11) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                              3
  PROSTATE ADENOCARCINOMA ACINAR TYPE                               259
[1] 2 2
[1] FALSE
                                vv
clus                              R0  R1  R2  RX
  AMP PEAK 22(XP22.11) MUTATED     7   1   0   0
  AMP PEAK 22(XP22.11) WILD-TYPE 185  56   3   6
D22V5, multiclass
    clus
vv   AMP PEAK 22(XP22.11) MUTATED AMP PEAK 22(XP22.11) WILD-TYPE
  R0                            7                            185
  R1                            1                             56
  R2                            0                              3
  RX                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D22V6, continuous
D22V7, continuous
D22V8, continuous
D22V9, continuous
D22V10, continuous
D22V11, continuous
D22V12, continuous
                                vv
clus                             ASIAN BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 22(XP22.11) MUTATED       0                         1     3
  AMP PEAK 22(XP22.11) WILD-TYPE     2                         6   143
D22V13, multiclass
                           clus
vv                          AMP PEAK 22(XP22.11) MUTATED
  ASIAN                                                0
  BLACK OR AFRICAN AMERICAN                            1
  WHITE                                                3
                           clus
vv                          AMP PEAK 22(XP22.11) WILD-TYPE
  ASIAN                                                  2
  BLACK OR AFRICAN AMERICAN                              6
  WHITE                                                143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(XP21.1) MUTATION ANALYSIS
D23V1, continuous
                               vv
clus                             T2  T3  T4
  AMP PEAK 23(XP21.1) MUTATED     1   7   0
  AMP PEAK 23(XP21.1) WILD-TYPE 127 129   5
D23V2, multiclass
    clus
vv   AMP PEAK 23(XP21.1) MUTATED AMP PEAK 23(XP21.1) WILD-TYPE
  T2                           1                           127
  T3                           7                           129
  T4                           0                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D23V3, binary
                               cls
clus                              0   1
  AMP PEAK 23(XP21.1) MUTATED     7   1
  AMP PEAK 23(XP21.1) WILD-TYPE 194  23
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 23(XP21.1) MUTATED      7    1
  AMP PEAK 23(XP21.1) WILD-TYPE  194   23
   clus
vv  AMP PEAK 23(XP21.1) MUTATED AMP PEAK 23(XP21.1) WILD-TYPE
  0                           7                           194
  1                           1                            23
[1] 2 2
[1] FALSE
D23V4, binary
                               cls
clus                              0   1
  AMP PEAK 23(XP21.1) MUTATED     2   6
  AMP PEAK 23(XP21.1) WILD-TYPE   3 260
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 23(XP21.1) MUTATED      2    6
  AMP PEAK 23(XP21.1) WILD-TYPE    3  260
                                        clus
vv                                       AMP PEAK 23(XP21.1) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                           2
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              6
                                        clus
vv                                       AMP PEAK 23(XP21.1) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                             3
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              260
[1] 2 2
[1] FALSE
                               vv
clus                             R0  R1  R2  RX
  AMP PEAK 23(XP21.1) MUTATED     7   1   0   0
  AMP PEAK 23(XP21.1) WILD-TYPE 185  56   3   6
D23V5, multiclass
    clus
vv   AMP PEAK 23(XP21.1) MUTATED AMP PEAK 23(XP21.1) WILD-TYPE
  R0                           7                           185
  R1                           1                            56
  R2                           0                             3
  RX                           0                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D23V6, continuous
D23V7, continuous
D23V8, continuous
D23V9, continuous
D23V10, continuous
D23V11, continuous
D23V12, continuous
                               vv
clus                            ASIAN BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 23(XP21.1) MUTATED       1                         1     2
  AMP PEAK 23(XP21.1) WILD-TYPE     1                         6   144
D23V13, multiclass
                           clus
vv                          AMP PEAK 23(XP21.1) MUTATED
  ASIAN                                               1
  BLACK OR AFRICAN AMERICAN                           1
  WHITE                                               2
                           clus
vv                          AMP PEAK 23(XP21.1) WILD-TYPE
  ASIAN                                                 1
  BLACK OR AFRICAN AMERICAN                             6
  WHITE                                               144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(XQ21.1) MUTATION ANALYSIS
D24V1, continuous
                               vv
clus                             T2  T3  T4
  AMP PEAK 24(XQ21.1) MUTATED     2   5   0
  AMP PEAK 24(XQ21.1) WILD-TYPE 126 131   5
D24V2, multiclass
    clus
vv   AMP PEAK 24(XQ21.1) MUTATED AMP PEAK 24(XQ21.1) WILD-TYPE
  T2                           2                           126
  T3                           5                           131
  T4                           0                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D24V3, binary
                               cls
clus                              0   1
  AMP PEAK 24(XQ21.1) MUTATED     6   1
  AMP PEAK 24(XQ21.1) WILD-TYPE 195  23
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 24(XQ21.1) MUTATED      6    1
  AMP PEAK 24(XQ21.1) WILD-TYPE  195   23
   clus
vv  AMP PEAK 24(XQ21.1) MUTATED AMP PEAK 24(XQ21.1) WILD-TYPE
  0                           6                           195
  1                           1                            23
[1] 2 2
[1] FALSE
D24V4, binary
                               cls
clus                              0   1
  AMP PEAK 24(XQ21.1) MUTATED     0   7
  AMP PEAK 24(XQ21.1) WILD-TYPE   5 259
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 24(XQ21.1) MUTATED      0    7
  AMP PEAK 24(XQ21.1) WILD-TYPE    5  259
                                        clus
vv                                       AMP PEAK 24(XQ21.1) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                           0
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              7
                                        clus
vv                                       AMP PEAK 24(XQ21.1) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                             5
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              259
[1] 2 2
[1] FALSE
                               vv
clus                             R0  R1  R2  RX
  AMP PEAK 24(XQ21.1) MUTATED     7   0   0   0
  AMP PEAK 24(XQ21.1) WILD-TYPE 185  57   3   6
D24V5, multiclass
    clus
vv   AMP PEAK 24(XQ21.1) MUTATED AMP PEAK 24(XQ21.1) WILD-TYPE
  R0                           7                           185
  R1                           0                            57
  R2                           0                             3
  RX                           0                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D24V6, continuous
D24V7, continuous
D24V8, continuous
D24V9, continuous
D24V10, continuous
D24V11, continuous
D24V12, continuous
                               vv
clus                            ASIAN BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 24(XQ21.1) MUTATED       0                         1     6
  AMP PEAK 24(XQ21.1) WILD-TYPE     2                         6   140
D24V13, multiclass
                           clus
vv                          AMP PEAK 24(XQ21.1) MUTATED
  ASIAN                                               0
  BLACK OR AFRICAN AMERICAN                           1
  WHITE                                               6
                           clus
vv                          AMP PEAK 24(XQ21.1) WILD-TYPE
  ASIAN                                                 2
  BLACK OR AFRICAN AMERICAN                             6
  WHITE                                               140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(XQ21.1) MUTATION ANALYSIS
D25V1, continuous
                               vv
clus                             T2  T3  T4
  AMP PEAK 25(XQ21.1) MUTATED     1   4   0
  AMP PEAK 25(XQ21.1) WILD-TYPE 127 132   5
D25V2, multiclass
    clus
vv   AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  T2                           1                           127
  T3                           4                           132
  T4                           0                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D25V3, binary
                               cls
clus                              0   1
  AMP PEAK 25(XQ21.1) MUTATED     3   2
  AMP PEAK 25(XQ21.1) WILD-TYPE 198  22
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 25(XQ21.1) MUTATED      3    2
  AMP PEAK 25(XQ21.1) WILD-TYPE  198   22
   clus
vv  AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  0                           3                           198
  1                           2                            22
[1] 2 2
[1] FALSE
D25V4, binary
                               cls
clus                              0   1
  AMP PEAK 25(XQ21.1) MUTATED     0   5
  AMP PEAK 25(XQ21.1) WILD-TYPE   5 261
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 25(XQ21.1) MUTATED      0    5
  AMP PEAK 25(XQ21.1) WILD-TYPE    5  261
                                        clus
vv                                       AMP PEAK 25(XQ21.1) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                           0
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              5
                                        clus
vv                                       AMP PEAK 25(XQ21.1) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                             5
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              261
[1] 2 2
[1] FALSE
                               vv
clus                             R0  R1  R2  RX
  AMP PEAK 25(XQ21.1) MUTATED     5   0   0   0
  AMP PEAK 25(XQ21.1) WILD-TYPE 187  57   3   6
D25V5, multiclass
    clus
vv   AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  R0                           5                           187
  R1                           0                            57
  R2                           0                             3
  RX                           0                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D25V6, continuous
D25V7, continuous
D25V8, continuous
D25V9, continuous
D25V10, continuous
D25V11, continuous
D25V12, continuous
                               vv
clus                            ASIAN BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 25(XQ21.1) MUTATED       0                         2     3
  AMP PEAK 25(XQ21.1) WILD-TYPE     2                         5   143
D25V13, multiclass
                           clus
vv                          AMP PEAK 25(XQ21.1) MUTATED
  ASIAN                                               0
  BLACK OR AFRICAN AMERICAN                           2
  WHITE                                               3
                           clus
vv                          AMP PEAK 25(XQ21.1) WILD-TYPE
  ASIAN                                                 2
  BLACK OR AFRICAN AMERICAN                             5
  WHITE                                               143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = AMP PEAK 26(XQ21.31) MUTATION ANALYSIS
D26V1, continuous
                                vv
clus                              T2  T3  T4
  AMP PEAK 26(XQ21.31) MUTATED     2   3   0
  AMP PEAK 26(XQ21.31) WILD-TYPE 126 133   5
D26V2, multiclass
    clus
vv   AMP PEAK 26(XQ21.31) MUTATED AMP PEAK 26(XQ21.31) WILD-TYPE
  T2                            2                            126
  T3                            3                            133
  T4                            0                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D26V3, binary
                                cls
clus                               0   1
  AMP PEAK 26(XQ21.31) MUTATED     5   0
  AMP PEAK 26(XQ21.31) WILD-TYPE 196  24
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 26(XQ21.31) MUTATED      5    0
  AMP PEAK 26(XQ21.31) WILD-TYPE  196   24
   clus
vv  AMP PEAK 26(XQ21.31) MUTATED AMP PEAK 26(XQ21.31) WILD-TYPE
  0                            5                            196
  1                            0                             24
[1] 2 2
[1] FALSE
D26V4, binary
                                cls
clus                               0   1
  AMP PEAK 26(XQ21.31) MUTATED     0   5
  AMP PEAK 26(XQ21.31) WILD-TYPE   5 261
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 26(XQ21.31) MUTATED      0    5
  AMP PEAK 26(XQ21.31) WILD-TYPE    5  261
                                        clus
vv                                       AMP PEAK 26(XQ21.31) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                            0
  PROSTATE ADENOCARCINOMA ACINAR TYPE                               5
                                        clus
vv                                       AMP PEAK 26(XQ21.31) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                              5
  PROSTATE ADENOCARCINOMA ACINAR TYPE                               261
[1] 2 2
[1] FALSE
                                vv
clus                              R0  R1  R2  RX
  AMP PEAK 26(XQ21.31) MUTATED     5   0   0   0
  AMP PEAK 26(XQ21.31) WILD-TYPE 187  57   3   6
D26V5, multiclass
    clus
vv   AMP PEAK 26(XQ21.31) MUTATED AMP PEAK 26(XQ21.31) WILD-TYPE
  R0                            5                            187
  R1                            0                             57
  R2                            0                              3
  RX                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D26V6, continuous
D26V7, continuous
D26V8, continuous
D26V9, continuous
D26V10, continuous
D26V11, continuous
D26V12, continuous
                                vv
clus                             ASIAN BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 26(XQ21.31) MUTATED       0                         1     4
  AMP PEAK 26(XQ21.31) WILD-TYPE     2                         6   142
D26V13, multiclass
                           clus
vv                          AMP PEAK 26(XQ21.31) MUTATED
  ASIAN                                                0
  BLACK OR AFRICAN AMERICAN                            1
  WHITE                                                4
                           clus
vv                          AMP PEAK 26(XQ21.31) WILD-TYPE
  ASIAN                                                  2
  BLACK OR AFRICAN AMERICAN                              6
  WHITE                                                142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = AMP PEAK 27(XQ25) MUTATION ANALYSIS
D27V1, continuous
                             vv
clus                           T2  T3  T4
  AMP PEAK 27(XQ25) MUTATED     1   3   0
  AMP PEAK 27(XQ25) WILD-TYPE 127 133   5
D27V2, multiclass
    clus
vv   AMP PEAK 27(XQ25) MUTATED AMP PEAK 27(XQ25) WILD-TYPE
  T2                         1                         127
  T3                         3                         133
  T4                         0                           5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D27V3, binary
                             cls
clus                            0   1
  AMP PEAK 27(XQ25) MUTATED     4   0
  AMP PEAK 27(XQ25) WILD-TYPE 197  24
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 27(XQ25) MUTATED      4    0
  AMP PEAK 27(XQ25) WILD-TYPE  197   24
   clus
vv  AMP PEAK 27(XQ25) MUTATED AMP PEAK 27(XQ25) WILD-TYPE
  0                         4                         197
  1                         0                          24
[1] 2 2
[1] FALSE
D27V4, binary
                             cls
clus                            0   1
  AMP PEAK 27(XQ25) MUTATED     0   4
  AMP PEAK 27(XQ25) WILD-TYPE   5 262
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 27(XQ25) MUTATED      0    4
  AMP PEAK 27(XQ25) WILD-TYPE    5  262
                                        clus
vv                                       AMP PEAK 27(XQ25) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                         0
  PROSTATE ADENOCARCINOMA ACINAR TYPE                            4
                                        clus
vv                                       AMP PEAK 27(XQ25) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                           5
  PROSTATE ADENOCARCINOMA ACINAR TYPE                            262
[1] 2 2
[1] FALSE
                             vv
clus                           R0  R1  R2  RX
  AMP PEAK 27(XQ25) MUTATED     4   0   0   0
  AMP PEAK 27(XQ25) WILD-TYPE 188  57   3   6
D27V5, multiclass
    clus
vv   AMP PEAK 27(XQ25) MUTATED AMP PEAK 27(XQ25) WILD-TYPE
  R0                         4                         188
  R1                         0                          57
  R2                         0                           3
  RX                         0                           6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D27V6, continuous
D27V7, continuous
D27V8, continuous
D27V9, continuous
D27V10, continuous
D27V11, continuous
D27V12, continuous
[1] "Remove cluster labels:"    "AMP PEAK 27(XQ25) MUTATED"
clus
  AMP PEAK 27(XQ25) MUTATED AMP PEAK 27(XQ25) WILD-TYPE 
                          2                         224 
                 TCGA-CH-5737                  TCGA-CH-5738 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-CH-5739                  TCGA-CH-5740 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-CH-5741                  TCGA-CH-5743 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-CH-5744                  TCGA-CH-5746 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-CH-5750                  TCGA-CH-5751 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-CH-5752                  TCGA-CH-5753 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-CH-5754                  TCGA-CH-5761 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-CH-5762                  TCGA-CH-5763 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-CH-5764                  TCGA-CH-5765 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-CH-5766                  TCGA-CH-5767 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-CH-5768                  TCGA-CH-5769 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-CH-5771                  TCGA-CH-5772 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-CH-5788                  TCGA-CH-5789 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-CH-5790                  TCGA-CH-5791 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-CH-5792                  TCGA-CH-5794 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-EJ-5495                  TCGA-EJ-5496 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-EJ-5497                  TCGA-EJ-5498 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-EJ-5499                  TCGA-EJ-5501 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-EJ-5502                  TCGA-EJ-5503 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-EJ-5504                  TCGA-EJ-5505 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-EJ-5506                  TCGA-EJ-5507 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-EJ-5508                  TCGA-EJ-5509 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-EJ-5510                  TCGA-EJ-5511 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-EJ-5512                  TCGA-EJ-5514 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-EJ-5515                  TCGA-EJ-5516 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-EJ-5517                  TCGA-EJ-5518 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-EJ-5519                  TCGA-EJ-5521 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-EJ-5522                  TCGA-EJ-5524 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-EJ-5525                  TCGA-EJ-5526 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-EJ-5527                  TCGA-EJ-5530 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-EJ-5531                  TCGA-EJ-5532 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-EJ-5542                  TCGA-EJ-7115 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-EJ-7123                  TCGA-EJ-7125 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-EJ-7314                  TCGA-EJ-7315 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-EJ-7317                  TCGA-EJ-7321 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-EJ-7327                  TCGA-EJ-7330 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-EJ-7782                  TCGA-EJ-7783 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-EJ-7784                  TCGA-EJ-7785 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-EJ-7786                  TCGA-EJ-7788 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-EJ-7791                  TCGA-EJ-7792 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-EJ-7793                  TCGA-EJ-7794 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-EJ-7797                  TCGA-EJ-8468 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-EJ-8469                  TCGA-EJ-8472 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-EJ-8474                  TCGA-EJ-A46B 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-EJ-A46D                  TCGA-EJ-A46E 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-EJ-A46F                  TCGA-EJ-A46G 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-EJ-A46H                  TCGA-EJ-A46I 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-EJ-A65B                  TCGA-EJ-A65D 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-EJ-A65E                  TCGA-EJ-A65G 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-EJ-A65J                  TCGA-EJ-A65M 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-FC-A5OB                  TCGA-FC-A66V 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-FC-A6HD                  TCGA-FC-A8O0 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-G9-6329                  TCGA-G9-6332 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-G9-6333                  TCGA-G9-6336 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-G9-6338                  TCGA-G9-6339 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-G9-6342                  TCGA-G9-6343 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-G9-6347                  TCGA-G9-6348 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-G9-6351                  TCGA-G9-6353 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-G9-6354                  TCGA-G9-6356 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-G9-6361                  TCGA-G9-6362 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-G9-6363                  TCGA-G9-6364 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-G9-6365                  TCGA-G9-6366 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-G9-6367                  TCGA-G9-6369 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-G9-6370                  TCGA-G9-6371 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-G9-6377                  TCGA-G9-6378 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-G9-6379                  TCGA-G9-6384 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-G9-6385                  TCGA-G9-6494 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-G9-6496                  TCGA-G9-6498 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-G9-7510                  TCGA-G9-7519 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-G9-7521                  TCGA-G9-7522 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-G9-7523                  TCGA-G9-7525 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-H9-7775                  TCGA-H9-A6BX 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-HC-7075                  TCGA-HC-7077 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-HC-7078                  TCGA-HC-7079 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-HC-7080                  TCGA-HC-7209 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-HC-7210                  TCGA-HC-7211 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-HC-7212                  TCGA-HC-7213 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-HC-7230                  TCGA-HC-7736 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-HC-7737                  TCGA-HC-7740 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-HC-7744                  TCGA-HC-7747 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-HC-7748                  TCGA-HC-7749 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-HC-7750                  TCGA-HC-7752 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-HC-7817                  TCGA-HC-7818 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-HC-7819                  TCGA-HC-7821 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-HC-8216                  TCGA-HC-8257 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-HC-8258                  TCGA-HC-8259 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-HC-8260                  TCGA-HC-8262 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-HC-8265                  TCGA-HI-7168 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-HI-7169                  TCGA-HI-7170 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-HI-7171                  TCGA-J4-8198 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-J4-8200                  TCGA-J4-A67K 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-J4-A67L                  TCGA-J4-A67M 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-J4-A67N                  TCGA-J4-A67O 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-J4-A67Q                  TCGA-J4-A67R 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-J4-A67S                  TCGA-J4-A67T 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-J4-A6G1                  TCGA-J4-A6G3 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-J4-A6M7                  TCGA-J4-A83I 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-J4-A83J                  TCGA-J4-A83K 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-J4-A83L                  TCGA-J4-A83M 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-J4-A83N                  TCGA-J9-A52B 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-J9-A52E                  TCGA-KK-A59V 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-KK-A59Y                  TCGA-KK-A59Z 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-KK-A6DY                  TCGA-KK-A6E3 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-KK-A6E4                  TCGA-KK-A6E5 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-KK-A6E7                  TCGA-M7-A723 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-QU-A6IL                  TCGA-QU-A6IM 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-QU-A6IP                  TCGA-VN-A88I 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-VN-A88K                  TCGA-VN-A88L 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-VN-A88N                  TCGA-VN-A88O 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-VN-A88P                  TCGA-VN-A88Q 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-VN-A88R                  TCGA-WW-A8ZI 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                 TCGA-XA-A8JR                  TCGA-Y6-A8TL 
"AMP PEAK 27(XQ25) WILD-TYPE" "AMP PEAK 27(XQ25) WILD-TYPE" 
                             vv
clus                          ASIAN BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 27(XQ25) MUTATED       0                         1     3
  AMP PEAK 27(XQ25) WILD-TYPE     2                         6   143
D27V13, multiclass
                           clus
vv                          AMP PEAK 27(XQ25) MUTATED
  ASIAN                                             0
  BLACK OR AFRICAN AMERICAN                         1
  WHITE                                             3
                           clus
vv                          AMP PEAK 27(XQ25) WILD-TYPE
  ASIAN                                               2
  BLACK OR AFRICAN AMERICAN                           6
  WHITE                                             143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = AMP PEAK 28(XQ25) MUTATION ANALYSIS
D28V1, continuous
                             vv
clus                           T2  T3  T4
  AMP PEAK 28(XQ25) MUTATED     2   4   0
  AMP PEAK 28(XQ25) WILD-TYPE 126 132   5
D28V2, multiclass
    clus
vv   AMP PEAK 28(XQ25) MUTATED AMP PEAK 28(XQ25) WILD-TYPE
  T2                         2                         126
  T3                         4                         132
  T4                         0                           5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D28V3, binary
                             cls
clus                            0   1
  AMP PEAK 28(XQ25) MUTATED     5   1
  AMP PEAK 28(XQ25) WILD-TYPE 196  23
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 28(XQ25) MUTATED      5    1
  AMP PEAK 28(XQ25) WILD-TYPE  196   23
   clus
vv  AMP PEAK 28(XQ25) MUTATED AMP PEAK 28(XQ25) WILD-TYPE
  0                         5                         196
  1                         1                          23
[1] 2 2
[1] FALSE
D28V4, binary
                             cls
clus                            0   1
  AMP PEAK 28(XQ25) MUTATED     0   6
  AMP PEAK 28(XQ25) WILD-TYPE   5 260
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 28(XQ25) MUTATED      0    6
  AMP PEAK 28(XQ25) WILD-TYPE    5  260
                                        clus
vv                                       AMP PEAK 28(XQ25) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                         0
  PROSTATE ADENOCARCINOMA ACINAR TYPE                            6
                                        clus
vv                                       AMP PEAK 28(XQ25) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                           5
  PROSTATE ADENOCARCINOMA ACINAR TYPE                            260
[1] 2 2
[1] FALSE
                             vv
clus                           R0  R1  R2  RX
  AMP PEAK 28(XQ25) MUTATED     6   0   0   0
  AMP PEAK 28(XQ25) WILD-TYPE 186  57   3   6
D28V5, multiclass
    clus
vv   AMP PEAK 28(XQ25) MUTATED AMP PEAK 28(XQ25) WILD-TYPE
  R0                         6                         186
  R1                         0                          57
  R2                         0                           3
  RX                         0                           6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D28V6, continuous
D28V7, continuous
D28V8, continuous
D28V9, continuous
D28V10, continuous
D28V11, continuous
D28V12, continuous
                             vv
clus                          ASIAN BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 28(XQ25) MUTATED       1                         1     4
  AMP PEAK 28(XQ25) WILD-TYPE     1                         6   142
D28V13, multiclass
                           clus
vv                          AMP PEAK 28(XQ25) MUTATED
  ASIAN                                             1
  BLACK OR AFRICAN AMERICAN                         1
  WHITE                                             4
                           clus
vv                          AMP PEAK 28(XQ25) WILD-TYPE
  ASIAN                                               1
  BLACK OR AFRICAN AMERICAN                           6
  WHITE                                             142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = AMP PEAK 29(XQ27.1) MUTATION ANALYSIS
D29V1, continuous
                               vv
clus                             T2  T3  T4
  AMP PEAK 29(XQ27.1) MUTATED     4   5   0
  AMP PEAK 29(XQ27.1) WILD-TYPE 124 131   5
D29V2, multiclass
    clus
vv   AMP PEAK 29(XQ27.1) MUTATED AMP PEAK 29(XQ27.1) WILD-TYPE
  T2                           4                           124
  T3                           5                           131
  T4                           0                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D29V3, binary
                               cls
clus                              0   1
  AMP PEAK 29(XQ27.1) MUTATED     8   0
  AMP PEAK 29(XQ27.1) WILD-TYPE 193  24
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 29(XQ27.1) MUTATED      8    0
  AMP PEAK 29(XQ27.1) WILD-TYPE  193   24
   clus
vv  AMP PEAK 29(XQ27.1) MUTATED AMP PEAK 29(XQ27.1) WILD-TYPE
  0                           8                           193
  1                           0                            24
[1] 2 2
[1] FALSE
D29V4, binary
                               cls
clus                              0   1
  AMP PEAK 29(XQ27.1) MUTATED     0   9
  AMP PEAK 29(XQ27.1) WILD-TYPE   5 257
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 29(XQ27.1) MUTATED      0    9
  AMP PEAK 29(XQ27.1) WILD-TYPE    5  257
                                        clus
vv                                       AMP PEAK 29(XQ27.1) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                           0
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              9
                                        clus
vv                                       AMP PEAK 29(XQ27.1) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                             5
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              257
[1] 2 2
[1] FALSE
                               vv
clus                             R0  R1  R2  RX
  AMP PEAK 29(XQ27.1) MUTATED     7   1   0   0
  AMP PEAK 29(XQ27.1) WILD-TYPE 185  56   3   6
D29V5, multiclass
    clus
vv   AMP PEAK 29(XQ27.1) MUTATED AMP PEAK 29(XQ27.1) WILD-TYPE
  R0                           7                           185
  R1                           1                            56
  R2                           0                             3
  RX                           0                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D29V6, continuous
D29V7, continuous
D29V8, continuous
D29V9, continuous
D29V10, continuous
D29V11, continuous
D29V12, continuous
                               vv
clus                            ASIAN BLACK OR AFRICAN AMERICAN WHITE
  AMP PEAK 29(XQ27.1) MUTATED       0                         1     8
  AMP PEAK 29(XQ27.1) WILD-TYPE     2                         6   138
D29V13, multiclass
                           clus
vv                          AMP PEAK 29(XQ27.1) MUTATED
  ASIAN                                               0
  BLACK OR AFRICAN AMERICAN                           1
  WHITE                                               8
                           clus
vv                          AMP PEAK 29(XQ27.1) WILD-TYPE
  ASIAN                                                 2
  BLACK OR AFRICAN AMERICAN                             6
  WHITE                                               138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  1(1P31.3) MUTATION ANALYSIS
D30V1, continuous
                               vv
clus                             T2  T3  T4
  DEL PEAK  1(1P31.3) MUTATED    11  22   0
  DEL PEAK  1(1P31.3) WILD-TYPE 117 114   5
D30V2, multiclass
    clus
vv   DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  T2                          11                           117
  T3                          22                           114
  T4                           0                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D30V3, binary
                               cls
clus                              0   1
  DEL PEAK  1(1P31.3) MUTATED    26   3
  DEL PEAK  1(1P31.3) WILD-TYPE 175  21
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  1(1P31.3) MUTATED     26    3
  DEL PEAK  1(1P31.3) WILD-TYPE  175   21
   clus
vv  DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  0                          26                           175
  1                           3                            21
[1] 2 2
[1] FALSE
D30V4, binary
                               cls
clus                              0   1
  DEL PEAK  1(1P31.3) MUTATED     0  33
  DEL PEAK  1(1P31.3) WILD-TYPE   5 233
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  1(1P31.3) MUTATED      0   33
  DEL PEAK  1(1P31.3) WILD-TYPE    5  233
                                        clus
vv                                       DEL PEAK  1(1P31.3) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                           0
  PROSTATE ADENOCARCINOMA ACINAR TYPE                             33
                                        clus
vv                                       DEL PEAK  1(1P31.3) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                             5
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              233
[1] 2 2
[1] FALSE
                               vv
clus                             R0  R1  R2  RX
  DEL PEAK  1(1P31.3) MUTATED    20  11   1   0
  DEL PEAK  1(1P31.3) WILD-TYPE 172  46   2   6
D30V5, multiclass
    clus
vv   DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  R0                          20                           172
  R1                          11                            46
  R2                           1                             2
  RX                           0                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D30V6, continuous
D30V7, continuous
D30V8, continuous
D30V9, continuous
D30V10, continuous
D30V11, continuous
D30V12, continuous
                               vv
clus                            ASIAN BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  1(1P31.3) MUTATED       1                         0    20
  DEL PEAK  1(1P31.3) WILD-TYPE     1                         7   126
D30V13, multiclass
                           clus
vv                          DEL PEAK  1(1P31.3) MUTATED
  ASIAN                                               1
  BLACK OR AFRICAN AMERICAN                           0
  WHITE                                              20
                           clus
vv                          DEL PEAK  1(1P31.3) WILD-TYPE
  ASIAN                                                 1
  BLACK OR AFRICAN AMERICAN                             7
  WHITE                                               126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK  2(1P22.1) MUTATION ANALYSIS
D31V1, continuous
                               vv
clus                             T2  T3  T4
  DEL PEAK  2(1P22.1) MUTATED     8  13   0
  DEL PEAK  2(1P22.1) WILD-TYPE 120 123   5
D31V2, multiclass
    clus
vv   DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  T2                           8                           120
  T3                          13                           123
  T4                           0                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D31V3, binary
                               cls
clus                              0   1
  DEL PEAK  2(1P22.1) MUTATED    16   3
  DEL PEAK  2(1P22.1) WILD-TYPE 185  21
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P22.1) MUTATED     16    3
  DEL PEAK  2(1P22.1) WILD-TYPE  185   21
   clus
vv  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  0                          16                           185
  1                           3                            21
[1] 2 2
[1] FALSE
D31V4, binary
                               cls
clus                              0   1
  DEL PEAK  2(1P22.1) MUTATED     0  21
  DEL PEAK  2(1P22.1) WILD-TYPE   5 245
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P22.1) MUTATED      0   21
  DEL PEAK  2(1P22.1) WILD-TYPE    5  245
                                        clus
vv                                       DEL PEAK  2(1P22.1) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                           0
  PROSTATE ADENOCARCINOMA ACINAR TYPE                             21
                                        clus
vv                                       DEL PEAK  2(1P22.1) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                             5
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              245
[1] 2 2
[1] FALSE
                               vv
clus                             R0  R1  R2  RX
  DEL PEAK  2(1P22.1) MUTATED    13   5   0   0
  DEL PEAK  2(1P22.1) WILD-TYPE 179  52   3   6
D31V5, multiclass
    clus
vv   DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  R0                          13                           179
  R1                           5                            52
  R2                           0                             3
  RX                           0                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D31V6, continuous
D31V7, continuous
D31V8, continuous
D31V9, continuous
D31V10, continuous
D31V11, continuous
D31V12, continuous
                               vv
clus                            ASIAN BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  2(1P22.1) MUTATED       0                         0    13
  DEL PEAK  2(1P22.1) WILD-TYPE     2                         7   133
D31V13, multiclass
                           clus
vv                          DEL PEAK  2(1P22.1) MUTATED
  ASIAN                                               0
  BLACK OR AFRICAN AMERICAN                           0
  WHITE                                              13
                           clus
vv                          DEL PEAK  2(1P22.1) WILD-TYPE
  ASIAN                                                 2
  BLACK OR AFRICAN AMERICAN                             7
  WHITE                                               133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK  3(1Q42.2) MUTATION ANALYSIS
D32V1, continuous
                               vv
clus                             T2  T3  T4
  DEL PEAK  3(1Q42.2) MUTATED    11  10   1
  DEL PEAK  3(1Q42.2) WILD-TYPE 117 126   4
D32V2, multiclass
    clus
vv   DEL PEAK  3(1Q42.2) MUTATED DEL PEAK  3(1Q42.2) WILD-TYPE
  T2                          11                           117
  T3                          10                           126
  T4                           1                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D32V3, binary
                               cls
clus                              0   1
  DEL PEAK  3(1Q42.2) MUTATED    18   4
  DEL PEAK  3(1Q42.2) WILD-TYPE 183  20
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(1Q42.2) MUTATED     18    4
  DEL PEAK  3(1Q42.2) WILD-TYPE  183   20
   clus
vv  DEL PEAK  3(1Q42.2) MUTATED DEL PEAK  3(1Q42.2) WILD-TYPE
  0                          18                           183
  1                           4                            20
[1] 2 2
[1] FALSE
D32V4, binary
                               cls
clus                              0   1
  DEL PEAK  3(1Q42.2) MUTATED     0  22
  DEL PEAK  3(1Q42.2) WILD-TYPE   5 244
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(1Q42.2) MUTATED      0   22
  DEL PEAK  3(1Q42.2) WILD-TYPE    5  244
                                        clus
vv                                       DEL PEAK  3(1Q42.2) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                           0
  PROSTATE ADENOCARCINOMA ACINAR TYPE                             22
                                        clus
vv                                       DEL PEAK  3(1Q42.2) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                             5
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              244
[1] 2 2
[1] FALSE
                               vv
clus                             R0  R1  R2  RX
  DEL PEAK  3(1Q42.2) MUTATED    12   8   0   0
  DEL PEAK  3(1Q42.2) WILD-TYPE 180  49   3   6
D32V5, multiclass
    clus
vv   DEL PEAK  3(1Q42.2) MUTATED DEL PEAK  3(1Q42.2) WILD-TYPE
  R0                          12                           180
  R1                           8                            49
  R2                           0                             3
  RX                           0                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D32V6, continuous
D32V7, continuous
D32V8, continuous
D32V9, continuous
D32V10, continuous
D32V11, continuous
D32V12, continuous
                               vv
clus                            ASIAN BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  3(1Q42.2) MUTATED       0                         1    12
  DEL PEAK  3(1Q42.2) WILD-TYPE     2                         6   134
D32V13, multiclass
                           clus
vv                          DEL PEAK  3(1Q42.2) MUTATED
  ASIAN                                               0
  BLACK OR AFRICAN AMERICAN                           1
  WHITE                                              12
                           clus
vv                          DEL PEAK  3(1Q42.2) WILD-TYPE
  ASIAN                                                 2
  BLACK OR AFRICAN AMERICAN                             6
  WHITE                                               134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK  4(2P22.1) MUTATION ANALYSIS
D33V1, continuous
                               vv
clus                             T2  T3  T4
  DEL PEAK  4(2P22.1) MUTATED     6  10   1
  DEL PEAK  4(2P22.1) WILD-TYPE 122 126   4
D33V2, multiclass
    clus
vv   DEL PEAK  4(2P22.1) MUTATED DEL PEAK  4(2P22.1) WILD-TYPE
  T2                           6                           122
  T3                          10                           126
  T4                           1                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D33V3, binary
                               cls
clus                              0   1
  DEL PEAK  4(2P22.1) MUTATED    11   6
  DEL PEAK  4(2P22.1) WILD-TYPE 190  18
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2P22.1) MUTATED     11    6
  DEL PEAK  4(2P22.1) WILD-TYPE  190   18
   clus
vv  DEL PEAK  4(2P22.1) MUTATED DEL PEAK  4(2P22.1) WILD-TYPE
  0                          11                           190
  1                           6                            18
[1] 2 2
[1] FALSE
D33V4, binary
                               cls
clus                              0   1
  DEL PEAK  4(2P22.1) MUTATED     0  17
  DEL PEAK  4(2P22.1) WILD-TYPE   5 249
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2P22.1) MUTATED      0   17
  DEL PEAK  4(2P22.1) WILD-TYPE    5  249
                                        clus
vv                                       DEL PEAK  4(2P22.1) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                           0
  PROSTATE ADENOCARCINOMA ACINAR TYPE                             17
                                        clus
vv                                       DEL PEAK  4(2P22.1) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                             5
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              249
[1] 2 2
[1] FALSE
                               vv
clus                             R0  R1  R2  RX
  DEL PEAK  4(2P22.1) MUTATED     9   6   0   0
  DEL PEAK  4(2P22.1) WILD-TYPE 183  51   3   6
D33V5, multiclass
    clus
vv   DEL PEAK  4(2P22.1) MUTATED DEL PEAK  4(2P22.1) WILD-TYPE
  R0                           9                           183
  R1                           6                            51
  R2                           0                             3
  RX                           0                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D33V6, continuous
D33V7, continuous
D33V8, continuous
D33V9, continuous
D33V10, continuous
D33V11, continuous
D33V12, continuous
                               vv
clus                            ASIAN BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  4(2P22.1) MUTATED       0                         0     8
  DEL PEAK  4(2P22.1) WILD-TYPE     2                         7   138
D33V13, multiclass
                           clus
vv                          DEL PEAK  4(2P22.1) MUTATED
  ASIAN                                               0
  BLACK OR AFRICAN AMERICAN                           0
  WHITE                                               8
                           clus
vv                          DEL PEAK  4(2P22.1) WILD-TYPE
  ASIAN                                                 2
  BLACK OR AFRICAN AMERICAN                             7
  WHITE                                               138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK  5(2Q22.1) MUTATION ANALYSIS
D34V1, continuous
                               vv
clus                             T2  T3  T4
  DEL PEAK  5(2Q22.1) MUTATED    17  19   1
  DEL PEAK  5(2Q22.1) WILD-TYPE 111 117   4
D34V2, multiclass
    clus
vv   DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  T2                          17                           111
  T3                          19                           117
  T4                           1                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D34V3, binary
                               cls
clus                              0   1
  DEL PEAK  5(2Q22.1) MUTATED    31   3
  DEL PEAK  5(2Q22.1) WILD-TYPE 170  21
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(2Q22.1) MUTATED     31    3
  DEL PEAK  5(2Q22.1) WILD-TYPE  170   21
   clus
vv  DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  0                          31                           170
  1                           3                            21
[1] 2 2
[1] FALSE
D34V4, binary
                               cls
clus                              0   1
  DEL PEAK  5(2Q22.1) MUTATED     0  37
  DEL PEAK  5(2Q22.1) WILD-TYPE   5 229
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(2Q22.1) MUTATED      0   37
  DEL PEAK  5(2Q22.1) WILD-TYPE    5  229
                                        clus
vv                                       DEL PEAK  5(2Q22.1) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                           0
  PROSTATE ADENOCARCINOMA ACINAR TYPE                             37
                                        clus
vv                                       DEL PEAK  5(2Q22.1) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                             5
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              229
[1] 2 2
[1] FALSE
                               vv
clus                             R0  R1  R2  RX
  DEL PEAK  5(2Q22.1) MUTATED    23   9   1   1
  DEL PEAK  5(2Q22.1) WILD-TYPE 169  48   2   5
D34V5, multiclass
    clus
vv   DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  R0                          23                           169
  R1                           9                            48
  R2                           1                             2
  RX                           1                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D34V6, continuous
D34V7, continuous
D34V8, continuous
D34V9, continuous
D34V10, continuous
D34V11, continuous
D34V12, continuous
                               vv
clus                            ASIAN BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  5(2Q22.1) MUTATED       0                         2    18
  DEL PEAK  5(2Q22.1) WILD-TYPE     2                         5   128
D34V13, multiclass
                           clus
vv                          DEL PEAK  5(2Q22.1) MUTATED
  ASIAN                                               0
  BLACK OR AFRICAN AMERICAN                           2
  WHITE                                              18
                           clus
vv                          DEL PEAK  5(2Q22.1) WILD-TYPE
  ASIAN                                                 2
  BLACK OR AFRICAN AMERICAN                             5
  WHITE                                               128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK  6(2Q22.3) MUTATION ANALYSIS
D35V1, continuous
                               vv
clus                             T2  T3  T4
  DEL PEAK  6(2Q22.3) MUTATED    17  16   1
  DEL PEAK  6(2Q22.3) WILD-TYPE 111 120   4
D35V2, multiclass
    clus
vv   DEL PEAK  6(2Q22.3) MUTATED DEL PEAK  6(2Q22.3) WILD-TYPE
  T2                          17                           111
  T3                          16                           120
  T4                           1                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D35V3, binary
                               cls
clus                              0   1
  DEL PEAK  6(2Q22.3) MUTATED    28   3
  DEL PEAK  6(2Q22.3) WILD-TYPE 173  21
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(2Q22.3) MUTATED     28    3
  DEL PEAK  6(2Q22.3) WILD-TYPE  173   21
   clus
vv  DEL PEAK  6(2Q22.3) MUTATED DEL PEAK  6(2Q22.3) WILD-TYPE
  0                          28                           173
  1                           3                            21
[1] 2 2
[1] FALSE
D35V4, binary
                               cls
clus                              0   1
  DEL PEAK  6(2Q22.3) MUTATED     0  34
  DEL PEAK  6(2Q22.3) WILD-TYPE   5 232
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(2Q22.3) MUTATED      0   34
  DEL PEAK  6(2Q22.3) WILD-TYPE    5  232
                                        clus
vv                                       DEL PEAK  6(2Q22.3) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                           0
  PROSTATE ADENOCARCINOMA ACINAR TYPE                             34
                                        clus
vv                                       DEL PEAK  6(2Q22.3) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                             5
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              232
[1] 2 2
[1] FALSE
                               vv
clus                             R0  R1  R2  RX
  DEL PEAK  6(2Q22.3) MUTATED    23   7   1   1
  DEL PEAK  6(2Q22.3) WILD-TYPE 169  50   2   5
D35V5, multiclass
    clus
vv   DEL PEAK  6(2Q22.3) MUTATED DEL PEAK  6(2Q22.3) WILD-TYPE
  R0                          23                           169
  R1                           7                            50
  R2                           1                             2
  RX                           1                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D35V6, continuous
D35V7, continuous
D35V8, continuous
D35V9, continuous
D35V10, continuous
D35V11, continuous
D35V12, continuous
                               vv
clus                            ASIAN BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  6(2Q22.3) MUTATED       0                         1    20
  DEL PEAK  6(2Q22.3) WILD-TYPE     2                         6   126
D35V13, multiclass
                           clus
vv                          DEL PEAK  6(2Q22.3) MUTATED
  ASIAN                                               0
  BLACK OR AFRICAN AMERICAN                           1
  WHITE                                              20
                           clus
vv                          DEL PEAK  6(2Q22.3) WILD-TYPE
  ASIAN                                                 2
  BLACK OR AFRICAN AMERICAN                             6
  WHITE                                               126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK  7(3P13) MUTATION ANALYSIS
D36V1, continuous
                             vv
clus                           T2  T3  T4
  DEL PEAK  7(3P13) MUTATED    19  23   1
  DEL PEAK  7(3P13) WILD-TYPE 109 113   4
D36V2, multiclass
    clus
vv   DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE
  T2                        19                         109
  T3                        23                         113
  T4                         1                           4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D36V3, binary
                             cls
clus                            0   1
  DEL PEAK  7(3P13) MUTATED    33   3
  DEL PEAK  7(3P13) WILD-TYPE 168  21
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  7(3P13) MUTATED     33    3
  DEL PEAK  7(3P13) WILD-TYPE  168   21
   clus
vv  DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE
  0                        33                         168
  1                         3                          21
[1] 2 2
[1] FALSE
D36V4, binary
                             cls
clus                            0   1
  DEL PEAK  7(3P13) MUTATED     2  41
  DEL PEAK  7(3P13) WILD-TYPE   3 225
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  7(3P13) MUTATED      2   41
  DEL PEAK  7(3P13) WILD-TYPE    3  225
                                        clus
vv                                       DEL PEAK  7(3P13) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                         2
  PROSTATE ADENOCARCINOMA ACINAR TYPE                           41
                                        clus
vv                                       DEL PEAK  7(3P13) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                           3
  PROSTATE ADENOCARCINOMA ACINAR TYPE                            225
[1] 2 2
[1] FALSE
                             vv
clus                           R0  R1  R2  RX
  DEL PEAK  7(3P13) MUTATED    32   7   0   3
  DEL PEAK  7(3P13) WILD-TYPE 160  50   3   3
D36V5, multiclass
    clus
vv   DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE
  R0                        32                         160
  R1                         7                          50
  R2                         0                           3
  RX                         3                           3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D36V6, continuous
D36V7, continuous
D36V8, continuous
D36V9, continuous
D36V10, continuous
D36V11, continuous
D36V12, continuous
                             vv
clus                          ASIAN BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  7(3P13) MUTATED       0                         1    23
  DEL PEAK  7(3P13) WILD-TYPE     2                         6   123
D36V13, multiclass
                           clus
vv                          DEL PEAK  7(3P13) MUTATED
  ASIAN                                             0
  BLACK OR AFRICAN AMERICAN                         1
  WHITE                                            23
                           clus
vv                          DEL PEAK  7(3P13) WILD-TYPE
  ASIAN                                               2
  BLACK OR AFRICAN AMERICAN                           6
  WHITE                                             123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK  8(3Q29) MUTATION ANALYSIS
D37V1, continuous
                             vv
clus                           T2  T3  T4
  DEL PEAK  8(3Q29) MUTATED     7   9   0
  DEL PEAK  8(3Q29) WILD-TYPE 121 127   5
D37V2, multiclass
    clus
vv   DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  T2                         7                         121
  T3                         9                         127
  T4                         0                           5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D37V3, binary
                             cls
clus                            0   1
  DEL PEAK  8(3Q29) MUTATED    13   3
  DEL PEAK  8(3Q29) WILD-TYPE 188  21
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  8(3Q29) MUTATED     13    3
  DEL PEAK  8(3Q29) WILD-TYPE  188   21
   clus
vv  DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  0                        13                         188
  1                         3                          21
[1] 2 2
[1] FALSE
D37V4, binary
                             cls
clus                            0   1
  DEL PEAK  8(3Q29) MUTATED     1  15
  DEL PEAK  8(3Q29) WILD-TYPE   4 251
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  8(3Q29) MUTATED      1   15
  DEL PEAK  8(3Q29) WILD-TYPE    4  251
                                        clus
vv                                       DEL PEAK  8(3Q29) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                         1
  PROSTATE ADENOCARCINOMA ACINAR TYPE                           15
                                        clus
vv                                       DEL PEAK  8(3Q29) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                           4
  PROSTATE ADENOCARCINOMA ACINAR TYPE                            251
[1] 2 2
[1] FALSE
                             vv
clus                           R0  R1  R2  RX
  DEL PEAK  8(3Q29) MUTATED     9   3   1   1
  DEL PEAK  8(3Q29) WILD-TYPE 183  54   2   5
D37V5, multiclass
    clus
vv   DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  R0                         9                         183
  R1                         3                          54
  R2                         1                           2
  RX                         1                           5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D37V6, continuous
D37V7, continuous
D37V8, continuous
D37V9, continuous
D37V10, continuous
D37V11, continuous
D37V12, continuous
                             vv
clus                          ASIAN BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  8(3Q29) MUTATED       0                         0     8
  DEL PEAK  8(3Q29) WILD-TYPE     2                         7   138
D37V13, multiclass
                           clus
vv                          DEL PEAK  8(3Q29) MUTATED
  ASIAN                                             0
  BLACK OR AFRICAN AMERICAN                         0
  WHITE                                             8
                           clus
vv                          DEL PEAK  8(3Q29) WILD-TYPE
  ASIAN                                               2
  BLACK OR AFRICAN AMERICAN                           7
  WHITE                                             138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK  9(4Q28.1) MUTATION ANALYSIS
D38V1, continuous
                               vv
clus                             T2  T3  T4
  DEL PEAK  9(4Q28.1) MUTATED    11  11   2
  DEL PEAK  9(4Q28.1) WILD-TYPE 117 125   3
D38V2, multiclass
    clus
vv   DEL PEAK  9(4Q28.1) MUTATED DEL PEAK  9(4Q28.1) WILD-TYPE
  T2                          11                           117
  T3                          11                           125
  T4                           2                             3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D38V3, binary
                               cls
clus                              0   1
  DEL PEAK  9(4Q28.1) MUTATED    18   3
  DEL PEAK  9(4Q28.1) WILD-TYPE 183  21
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(4Q28.1) MUTATED     18    3
  DEL PEAK  9(4Q28.1) WILD-TYPE  183   21
   clus
vv  DEL PEAK  9(4Q28.1) MUTATED DEL PEAK  9(4Q28.1) WILD-TYPE
  0                          18                           183
  1                           3                            21
[1] 2 2
[1] FALSE
D38V4, binary
                               cls
clus                              0   1
  DEL PEAK  9(4Q28.1) MUTATED     1  23
  DEL PEAK  9(4Q28.1) WILD-TYPE   4 243
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(4Q28.1) MUTATED      1   23
  DEL PEAK  9(4Q28.1) WILD-TYPE    4  243
                                        clus
vv                                       DEL PEAK  9(4Q28.1) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                           1
  PROSTATE ADENOCARCINOMA ACINAR TYPE                             23
                                        clus
vv                                       DEL PEAK  9(4Q28.1) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                             4
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              243
[1] 2 2
[1] FALSE
                               vv
clus                             R0  R1  R2  RX
  DEL PEAK  9(4Q28.1) MUTATED    14   9   0   0
  DEL PEAK  9(4Q28.1) WILD-TYPE 178  48   3   6
D38V5, multiclass
    clus
vv   DEL PEAK  9(4Q28.1) MUTATED DEL PEAK  9(4Q28.1) WILD-TYPE
  R0                          14                           178
  R1                           9                            48
  R2                           0                             3
  RX                           0                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D38V6, continuous
D38V7, continuous
D38V8, continuous
D38V9, continuous
D38V10, continuous
D38V11, continuous
D38V12, continuous
                               vv
clus                            ASIAN BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK  9(4Q28.1) MUTATED       0                         2    13
  DEL PEAK  9(4Q28.1) WILD-TYPE     2                         5   133
D38V13, multiclass
                           clus
vv                          DEL PEAK  9(4Q28.1) MUTATED
  ASIAN                                               0
  BLACK OR AFRICAN AMERICAN                           2
  WHITE                                              13
                           clus
vv                          DEL PEAK  9(4Q28.1) WILD-TYPE
  ASIAN                                                 2
  BLACK OR AFRICAN AMERICAN                             5
  WHITE                                               133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 10(5Q11.2) MUTATION ANALYSIS
D39V1, continuous
                               vv
clus                             T2  T3  T4
  DEL PEAK 10(5Q11.2) MUTATED     8  29   1
  DEL PEAK 10(5Q11.2) WILD-TYPE 120 107   4
D39V2, multiclass
    clus
vv   DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE
  T2                           8                           120
  T3                          29                           107
  T4                           1                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D39V3, binary
                               cls
clus                              0   1
  DEL PEAK 10(5Q11.2) MUTATED    23  12
  DEL PEAK 10(5Q11.2) WILD-TYPE 178  12
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(5Q11.2) MUTATED     23   12
  DEL PEAK 10(5Q11.2) WILD-TYPE  178   12
   clus
vv  DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE
  0                          23                           178
  1                          12                            12
[1] 2 2
[1] FALSE
D39V4, binary
                               cls
clus                              0   1
  DEL PEAK 10(5Q11.2) MUTATED     0  38
  DEL PEAK 10(5Q11.2) WILD-TYPE   5 228
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(5Q11.2) MUTATED      0   38
  DEL PEAK 10(5Q11.2) WILD-TYPE    5  228
                                        clus
vv                                       DEL PEAK 10(5Q11.2) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                           0
  PROSTATE ADENOCARCINOMA ACINAR TYPE                             38
                                        clus
vv                                       DEL PEAK 10(5Q11.2) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                             5
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              228
[1] 2 2
[1] FALSE
                               vv
clus                             R0  R1  R2  RX
  DEL PEAK 10(5Q11.2) MUTATED    24  10   0   1
  DEL PEAK 10(5Q11.2) WILD-TYPE 168  47   3   5
D39V5, multiclass
    clus
vv   DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE
  R0                          24                           168
  R1                          10                            47
  R2                           0                             3
  RX                           1                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D39V6, continuous
D39V7, continuous
D39V8, continuous
D39V9, continuous
D39V10, continuous
D39V11, continuous
D39V12, continuous
                               vv
clus                            ASIAN BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 10(5Q11.2) MUTATED       0                         2    19
  DEL PEAK 10(5Q11.2) WILD-TYPE     2                         5   127
D39V13, multiclass
                           clus
vv                          DEL PEAK 10(5Q11.2) MUTATED
  ASIAN                                               0
  BLACK OR AFRICAN AMERICAN                           2
  WHITE                                              19
                           clus
vv                          DEL PEAK 10(5Q11.2) WILD-TYPE
  ASIAN                                                 2
  BLACK OR AFRICAN AMERICAN                             5
  WHITE                                               127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 11(5Q13.2) MUTATION ANALYSIS
D40V1, continuous
                               vv
clus                             T2  T3  T4
  DEL PEAK 11(5Q13.2) MUTATED     8  28   1
  DEL PEAK 11(5Q13.2) WILD-TYPE 120 108   4
D40V2, multiclass
    clus
vv   DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  T2                           8                           120
  T3                          28                           108
  T4                           1                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D40V3, binary
                               cls
clus                              0   1
  DEL PEAK 11(5Q13.2) MUTATED    27   9
  DEL PEAK 11(5Q13.2) WILD-TYPE 174  15
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(5Q13.2) MUTATED     27    9
  DEL PEAK 11(5Q13.2) WILD-TYPE  174   15
   clus
vv  DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  0                          27                           174
  1                           9                            15
[1] 2 2
[1] FALSE
D40V4, binary
                               cls
clus                              0   1
  DEL PEAK 11(5Q13.2) MUTATED     0  37
  DEL PEAK 11(5Q13.2) WILD-TYPE   5 229
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(5Q13.2) MUTATED      0   37
  DEL PEAK 11(5Q13.2) WILD-TYPE    5  229
                                        clus
vv                                       DEL PEAK 11(5Q13.2) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                           0
  PROSTATE ADENOCARCINOMA ACINAR TYPE                             37
                                        clus
vv                                       DEL PEAK 11(5Q13.2) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                             5
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              229
[1] 2 2
[1] FALSE
                               vv
clus                             R0  R1  R2  RX
  DEL PEAK 11(5Q13.2) MUTATED    26   9   0   0
  DEL PEAK 11(5Q13.2) WILD-TYPE 166  48   3   6
D40V5, multiclass
    clus
vv   DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  R0                          26                           166
  R1                           9                            48
  R2                           0                             3
  RX                           0                             6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D40V6, continuous
D40V7, continuous
D40V8, continuous
D40V9, continuous
D40V10, continuous
D40V11, continuous
D40V12, continuous
                               vv
clus                            ASIAN BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 11(5Q13.2) MUTATED       1                         1    19
  DEL PEAK 11(5Q13.2) WILD-TYPE     1                         6   127
D40V13, multiclass
                           clus
vv                          DEL PEAK 11(5Q13.2) MUTATED
  ASIAN                                               1
  BLACK OR AFRICAN AMERICAN                           1
  WHITE                                              19
                           clus
vv                          DEL PEAK 11(5Q13.2) WILD-TYPE
  ASIAN                                                 1
  BLACK OR AFRICAN AMERICAN                             6
  WHITE                                               127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 12(5Q21.1) MUTATION ANALYSIS
D41V1, continuous
                               vv
clus                             T2  T3  T4
  DEL PEAK 12(5Q21.1) MUTATED    19  25   1
  DEL PEAK 12(5Q21.1) WILD-TYPE 109 111   4
D41V2, multiclass
    clus
vv   DEL PEAK 12(5Q21.1) MUTATED DEL PEAK 12(5Q21.1) WILD-TYPE
  T2                          19                           109
  T3                          25                           111
  T4                           1                             4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D41V3, binary
                               cls
clus                              0   1
  DEL PEAK 12(5Q21.1) MUTATED    34   7
  DEL PEAK 12(5Q21.1) WILD-TYPE 167  17
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(5Q21.1) MUTATED     34    7
  DEL PEAK 12(5Q21.1) WILD-TYPE  167   17
   clus
vv  DEL PEAK 12(5Q21.1) MUTATED DEL PEAK 12(5Q21.1) WILD-TYPE
  0                          34                           167
  1                           7                            17
[1] 2 2
[1] FALSE
D41V4, binary
                               cls
clus                              0   1
  DEL PEAK 12(5Q21.1) MUTATED     1  44
  DEL PEAK 12(5Q21.1) WILD-TYPE   4 222
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(5Q21.1) MUTATED      1   44
  DEL PEAK 12(5Q21.1) WILD-TYPE    4  222
                                        clus
vv                                       DEL PEAK 12(5Q21.1) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                           1
  PROSTATE ADENOCARCINOMA ACINAR TYPE                             44
                                        clus
vv                                       DEL PEAK 12(5Q21.1) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                             4
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              222
[1] 2 2
[1] FALSE
                               vv
clus                             R0  R1  R2  RX
  DEL PEAK 12(5Q21.1) MUTATED    32   9   0   1
  DEL PEAK 12(5Q21.1) WILD-TYPE 160  48   3   5
D41V5, multiclass
    clus
vv   DEL PEAK 12(5Q21.1) MUTATED DEL PEAK 12(5Q21.1) WILD-TYPE
  R0                          32                           160
  R1                           9                            48
  R2                           0                             3
  RX                           1                             5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D41V6, continuous
D41V7, continuous
D41V8, continuous
D41V9, continuous
D41V10, continuous
D41V11, continuous
D41V12, continuous
                               vv
clus                            ASIAN BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 12(5Q21.1) MUTATED       0                         2    25
  DEL PEAK 12(5Q21.1) WILD-TYPE     2                         5   121
D41V13, multiclass
                           clus
vv                          DEL PEAK 12(5Q21.1) MUTATED
  ASIAN                                               0
  BLACK OR AFRICAN AMERICAN                           2
  WHITE                                              25
                           clus
vv                          DEL PEAK 12(5Q21.1) WILD-TYPE
  ASIAN                                                 2
  BLACK OR AFRICAN AMERICAN                             5
  WHITE                                               121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 13(6Q14.3) MUTATION ANALYSIS
D42V1, continuous
                               vv
clus                            T2 T3 T4
  DEL PEAK 13(6Q14.3) MUTATED   35 48  2
  DEL PEAK 13(6Q14.3) WILD-TYPE 93 88  3
D42V2, multiclass
    clus
vv   DEL PEAK 13(6Q14.3) MUTATED DEL PEAK 13(6Q14.3) WILD-TYPE
  T2                          35                            93
  T3                          48                            88
  T4                           2                             3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D42V3, binary
                               cls
clus                              0   1
  DEL PEAK 13(6Q14.3) MUTATED    63  14
  DEL PEAK 13(6Q14.3) WILD-TYPE 138  10
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 13(6Q14.3) MUTATED     63   14
  DEL PEAK 13(6Q14.3) WILD-TYPE  138   10
   clus
vv  DEL PEAK 13(6Q14.3) MUTATED DEL PEAK 13(6Q14.3) WILD-TYPE
  0                          63                           138
  1                          14                            10
[1] 2 2
[1] FALSE
D42V4, binary
                               cls
clus                              0   1
  DEL PEAK 13(6Q14.3) MUTATED     2  83
  DEL PEAK 13(6Q14.3) WILD-TYPE   3 183
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 13(6Q14.3) MUTATED      2   83
  DEL PEAK 13(6Q14.3) WILD-TYPE    3  183
                                        clus
vv                                       DEL PEAK 13(6Q14.3) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                           2
  PROSTATE ADENOCARCINOMA ACINAR TYPE                             83
                                        clus
vv                                       DEL PEAK 13(6Q14.3) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                             3
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              183
[1] 2 2
[1] FALSE
                               vv
clus                             R0  R1  R2  RX
  DEL PEAK 13(6Q14.3) MUTATED    51  25   1   2
  DEL PEAK 13(6Q14.3) WILD-TYPE 141  32   2   4
D42V5, multiclass
    clus
vv   DEL PEAK 13(6Q14.3) MUTATED DEL PEAK 13(6Q14.3) WILD-TYPE
  R0                          51                           141
  R1                          25                            32
  R2                           1                             2
  RX                           2                             4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D42V6, continuous
D42V7, continuous
D42V8, continuous
D42V9, continuous
D42V10, continuous
D42V11, continuous
D42V12, continuous
                               vv
clus                            ASIAN BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 13(6Q14.3) MUTATED       0                         3    43
  DEL PEAK 13(6Q14.3) WILD-TYPE     2                         4   103
D42V13, multiclass
                           clus
vv                          DEL PEAK 13(6Q14.3) MUTATED
  ASIAN                                               0
  BLACK OR AFRICAN AMERICAN                           3
  WHITE                                              43
                           clus
vv                          DEL PEAK 13(6Q14.3) WILD-TYPE
  ASIAN                                                 2
  BLACK OR AFRICAN AMERICAN                             4
  WHITE                                               103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 14(7Q31.33) MUTATION ANALYSIS
D43V1, continuous
                                vv
clus                              T2  T3  T4
  DEL PEAK 14(7Q31.33) MUTATED     6   7   0
  DEL PEAK 14(7Q31.33) WILD-TYPE 122 129   5
D43V2, multiclass
    clus
vv   DEL PEAK 14(7Q31.33) MUTATED DEL PEAK 14(7Q31.33) WILD-TYPE
  T2                            6                            122
  T3                            7                            129
  T4                            0                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D43V3, binary
                                cls
clus                               0   1
  DEL PEAK 14(7Q31.33) MUTATED     9   2
  DEL PEAK 14(7Q31.33) WILD-TYPE 192  22
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 14(7Q31.33) MUTATED      9    2
  DEL PEAK 14(7Q31.33) WILD-TYPE  192   22
   clus
vv  DEL PEAK 14(7Q31.33) MUTATED DEL PEAK 14(7Q31.33) WILD-TYPE
  0                            9                            192
  1                            2                             22
[1] 2 2
[1] FALSE
D43V4, binary
                                cls
clus                               0   1
  DEL PEAK 14(7Q31.33) MUTATED     0  13
  DEL PEAK 14(7Q31.33) WILD-TYPE   5 253
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 14(7Q31.33) MUTATED      0   13
  DEL PEAK 14(7Q31.33) WILD-TYPE    5  253
                                        clus
vv                                       DEL PEAK 14(7Q31.33) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                            0
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              13
                                        clus
vv                                       DEL PEAK 14(7Q31.33) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                              5
  PROSTATE ADENOCARCINOMA ACINAR TYPE                               253
[1] 2 2
[1] FALSE
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 14(7Q31.33) MUTATED    11   1   0   0
  DEL PEAK 14(7Q31.33) WILD-TYPE 181  56   3   6
D43V5, multiclass
    clus
vv   DEL PEAK 14(7Q31.33) MUTATED DEL PEAK 14(7Q31.33) WILD-TYPE
  R0                           11                            181
  R1                            1                             56
  R2                            0                              3
  RX                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D43V6, continuous
D43V7, continuous
D43V8, continuous
D43V9, continuous
D43V10, continuous
D43V11, continuous
D43V12, continuous
                                vv
clus                             ASIAN BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 14(7Q31.33) MUTATED       0                         0     7
  DEL PEAK 14(7Q31.33) WILD-TYPE     2                         7   139
D43V13, multiclass
                           clus
vv                          DEL PEAK 14(7Q31.33) MUTATED
  ASIAN                                                0
  BLACK OR AFRICAN AMERICAN                            0
  WHITE                                                7
                           clus
vv                          DEL PEAK 14(7Q31.33) WILD-TYPE
  ASIAN                                                  2
  BLACK OR AFRICAN AMERICAN                              7
  WHITE                                                139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 15(8P21.3) MUTATION ANALYSIS
D44V1, continuous
                               vv
clus                            T2 T3 T4
  DEL PEAK 15(8P21.3) MUTATED   54 88  4
  DEL PEAK 15(8P21.3) WILD-TYPE 74 48  1
D44V2, multiclass
    clus
vv   DEL PEAK 15(8P21.3) MUTATED DEL PEAK 15(8P21.3) WILD-TYPE
  T2                          54                            74
  T3                          88                            48
  T4                           4                             1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D44V3, binary
                               cls
clus                              0   1
  DEL PEAK 15(8P21.3) MUTATED   110  18
  DEL PEAK 15(8P21.3) WILD-TYPE  91   6
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(8P21.3) MUTATED    110   18
  DEL PEAK 15(8P21.3) WILD-TYPE   91    6
   clus
vv  DEL PEAK 15(8P21.3) MUTATED DEL PEAK 15(8P21.3) WILD-TYPE
  0                         110                            91
  1                          18                             6
[1] 2 2
[1] FALSE
D44V4, binary
                               cls
clus                              0   1
  DEL PEAK 15(8P21.3) MUTATED     3 143
  DEL PEAK 15(8P21.3) WILD-TYPE   2 123
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(8P21.3) MUTATED      3  143
  DEL PEAK 15(8P21.3) WILD-TYPE    2  123
                                        clus
vv                                       DEL PEAK 15(8P21.3) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                           3
  PROSTATE ADENOCARCINOMA ACINAR TYPE                            143
                                        clus
vv                                       DEL PEAK 15(8P21.3) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                             2
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              123
[1] 2 2
[1] FALSE
                               vv
clus                             R0  R1  R2  RX
  DEL PEAK 15(8P21.3) MUTATED   105  28   2   3
  DEL PEAK 15(8P21.3) WILD-TYPE  87  29   1   3
D44V5, multiclass
    clus
vv   DEL PEAK 15(8P21.3) MUTATED DEL PEAK 15(8P21.3) WILD-TYPE
  R0                         105                            87
  R1                          28                            29
  R2                           2                             1
  RX                           3                             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D44V6, continuous
D44V7, continuous
D44V8, continuous
D44V9, continuous
D44V10, continuous
D44V11, continuous
D44V12, continuous
                               vv
clus                            ASIAN BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 15(8P21.3) MUTATED       2                         4    88
  DEL PEAK 15(8P21.3) WILD-TYPE     0                         3    58
D44V13, multiclass
                           clus
vv                          DEL PEAK 15(8P21.3) MUTATED
  ASIAN                                               2
  BLACK OR AFRICAN AMERICAN                           4
  WHITE                                              88
                           clus
vv                          DEL PEAK 15(8P21.3) WILD-TYPE
  ASIAN                                                 0
  BLACK OR AFRICAN AMERICAN                             3
  WHITE                                                58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 16(8P11.21) MUTATION ANALYSIS
D45V1, continuous
                                vv
clus                             T2 T3 T4
  DEL PEAK 16(8P11.21) MUTATED   33 48  1
  DEL PEAK 16(8P11.21) WILD-TYPE 95 88  4
D45V2, multiclass
    clus
vv   DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  T2                           33                             95
  T3                           48                             88
  T4                            1                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D45V3, binary
                                cls
clus                               0   1
  DEL PEAK 16(8P11.21) MUTATED    66   8
  DEL PEAK 16(8P11.21) WILD-TYPE 135  16
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(8P11.21) MUTATED     66    8
  DEL PEAK 16(8P11.21) WILD-TYPE  135   16
   clus
vv  DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  0                           66                            135
  1                            8                             16
[1] 2 2
[1] FALSE
D45V4, binary
                                cls
clus                               0   1
  DEL PEAK 16(8P11.21) MUTATED     2  80
  DEL PEAK 16(8P11.21) WILD-TYPE   3 186
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(8P11.21) MUTATED      2   80
  DEL PEAK 16(8P11.21) WILD-TYPE    3  186
                                        clus
vv                                       DEL PEAK 16(8P11.21) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                            2
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              80
                                        clus
vv                                       DEL PEAK 16(8P11.21) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                              3
  PROSTATE ADENOCARCINOMA ACINAR TYPE                               186
[1] 2 2
[1] FALSE
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 16(8P11.21) MUTATED    67   8   1   3
  DEL PEAK 16(8P11.21) WILD-TYPE 125  49   2   3
D45V5, multiclass
    clus
vv   DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  R0                           67                            125
  R1                            8                             49
  R2                            1                              2
  RX                            3                              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D45V6, continuous
D45V7, continuous
D45V8, continuous
D45V9, continuous
D45V10, continuous
D45V11, continuous
D45V12, continuous
                                vv
clus                             ASIAN BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 16(8P11.21) MUTATED       2                         2    47
  DEL PEAK 16(8P11.21) WILD-TYPE     0                         5    99
D45V13, multiclass
                           clus
vv                          DEL PEAK 16(8P11.21) MUTATED
  ASIAN                                                2
  BLACK OR AFRICAN AMERICAN                            2
  WHITE                                               47
                           clus
vv                          DEL PEAK 16(8P11.21) WILD-TYPE
  ASIAN                                                  0
  BLACK OR AFRICAN AMERICAN                              5
  WHITE                                                 99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 17(9P23) MUTATION ANALYSIS
D46V1, continuous
                             vv
clus                           T2  T3  T4
  DEL PEAK 17(9P23) MUTATED     9  14   1
  DEL PEAK 17(9P23) WILD-TYPE 119 122   4
D46V2, multiclass
    clus
vv   DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  T2                         9                         119
  T3                        14                         122
  T4                         1                           4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D46V3, binary
                             cls
clus                            0   1
  DEL PEAK 17(9P23) MUTATED    18   5
  DEL PEAK 17(9P23) WILD-TYPE 183  19
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 17(9P23) MUTATED     18    5
  DEL PEAK 17(9P23) WILD-TYPE  183   19
   clus
vv  DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  0                        18                         183
  1                         5                          19
[1] 2 2
[1] FALSE
D46V4, binary
                             cls
clus                            0   1
  DEL PEAK 17(9P23) MUTATED     0  24
  DEL PEAK 17(9P23) WILD-TYPE   5 242
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 17(9P23) MUTATED      0   24
  DEL PEAK 17(9P23) WILD-TYPE    5  242
                                        clus
vv                                       DEL PEAK 17(9P23) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                         0
  PROSTATE ADENOCARCINOMA ACINAR TYPE                           24
                                        clus
vv                                       DEL PEAK 17(9P23) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                           5
  PROSTATE ADENOCARCINOMA ACINAR TYPE                            242
[1] 2 2
[1] FALSE
                             vv
clus                           R0  R1  R2  RX
  DEL PEAK 17(9P23) MUTATED    16   7   0   0
  DEL PEAK 17(9P23) WILD-TYPE 176  50   3   6
D46V5, multiclass
    clus
vv   DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  R0                        16                         176
  R1                         7                          50
  R2                         0                           3
  RX                         0                           6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D46V6, continuous
D46V7, continuous
D46V8, continuous
D46V9, continuous
D46V10, continuous
D46V11, continuous
D46V12, continuous
                             vv
clus                          ASIAN BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 17(9P23) MUTATED       0                         0    15
  DEL PEAK 17(9P23) WILD-TYPE     2                         7   131
D46V13, multiclass
                           clus
vv                          DEL PEAK 17(9P23) MUTATED
  ASIAN                                             0
  BLACK OR AFRICAN AMERICAN                         0
  WHITE                                            15
                           clus
vv                          DEL PEAK 17(9P23) WILD-TYPE
  ASIAN                                               2
  BLACK OR AFRICAN AMERICAN                           7
  WHITE                                             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 18(10Q23.31) MUTATION ANALYSIS
D47V1, continuous
                                 vv
clus                              T2 T3 T4
  DEL PEAK 18(10Q23.31) MUTATED   29 52  3
  DEL PEAK 18(10Q23.31) WILD-TYPE 99 84  2
D47V2, multiclass
    clus
vv   DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  T2                            29                              99
  T3                            52                              84
  T4                             3                               2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D47V3, binary
                                 cls
clus                                0   1
  DEL PEAK 18(10Q23.31) MUTATED    63  14
  DEL PEAK 18(10Q23.31) WILD-TYPE 138  10
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 18(10Q23.31) MUTATED     63   14
  DEL PEAK 18(10Q23.31) WILD-TYPE  138   10
   clus
vv  DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  0                            63                             138
  1                            14                              10
[1] 2 2
[1] FALSE
D47V4, binary
                                 cls
clus                                0   1
  DEL PEAK 18(10Q23.31) MUTATED     1  83
  DEL PEAK 18(10Q23.31) WILD-TYPE   4 183
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 18(10Q23.31) MUTATED      1   83
  DEL PEAK 18(10Q23.31) WILD-TYPE    4  183
                                        clus
vv                                       DEL PEAK 18(10Q23.31) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                             1
  PROSTATE ADENOCARCINOMA ACINAR TYPE                               83
                                        clus
vv                                       DEL PEAK 18(10Q23.31) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                               4
  PROSTATE ADENOCARCINOMA ACINAR TYPE                                183
[1] 2 2
[1] FALSE
                                 vv
clus                               R0  R1  R2  RX
  DEL PEAK 18(10Q23.31) MUTATED    56  22   1   3
  DEL PEAK 18(10Q23.31) WILD-TYPE 136  35   2   3
D47V5, multiclass
    clus
vv   DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  R0                            56                             136
  R1                            22                              35
  R2                             1                               2
  RX                             3                               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D47V6, continuous
D47V7, continuous
D47V8, continuous
D47V9, continuous
D47V10, continuous
D47V11, continuous
D47V12, continuous
                                 vv
clus                              ASIAN BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 18(10Q23.31) MUTATED       2                         2    55
  DEL PEAK 18(10Q23.31) WILD-TYPE     0                         5    91
D47V13, multiclass
                           clus
vv                          DEL PEAK 18(10Q23.31) MUTATED
  ASIAN                                                 2
  BLACK OR AFRICAN AMERICAN                             2
  WHITE                                                55
                           clus
vv                          DEL PEAK 18(10Q23.31) WILD-TYPE
  ASIAN                                                   0
  BLACK OR AFRICAN AMERICAN                               5
  WHITE                                                  91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 19(11P11.2) MUTATION ANALYSIS
D48V1, continuous
                                vv
clus                              T2  T3  T4
  DEL PEAK 19(11P11.2) MUTATED     4   8   0
  DEL PEAK 19(11P11.2) WILD-TYPE 124 128   5
D48V2, multiclass
    clus
vv   DEL PEAK 19(11P11.2) MUTATED DEL PEAK 19(11P11.2) WILD-TYPE
  T2                            4                            124
  T3                            8                            128
  T4                            0                              5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D48V3, binary
                                cls
clus                               0   1
  DEL PEAK 19(11P11.2) MUTATED     8   3
  DEL PEAK 19(11P11.2) WILD-TYPE 193  21
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(11P11.2) MUTATED      8    3
  DEL PEAK 19(11P11.2) WILD-TYPE  193   21
   clus
vv  DEL PEAK 19(11P11.2) MUTATED DEL PEAK 19(11P11.2) WILD-TYPE
  0                            8                            193
  1                            3                             21
[1] 2 2
[1] FALSE
D48V4, binary
                                cls
clus                               0   1
  DEL PEAK 19(11P11.2) MUTATED     0  12
  DEL PEAK 19(11P11.2) WILD-TYPE   5 254
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(11P11.2) MUTATED      0   12
  DEL PEAK 19(11P11.2) WILD-TYPE    5  254
                                        clus
vv                                       DEL PEAK 19(11P11.2) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                            0
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              12
                                        clus
vv                                       DEL PEAK 19(11P11.2) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                              5
  PROSTATE ADENOCARCINOMA ACINAR TYPE                               254
[1] 2 2
[1] FALSE
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 19(11P11.2) MUTATED     7   4   1   0
  DEL PEAK 19(11P11.2) WILD-TYPE 185  53   2   6
D48V5, multiclass
    clus
vv   DEL PEAK 19(11P11.2) MUTATED DEL PEAK 19(11P11.2) WILD-TYPE
  R0                            7                            185
  R1                            4                             53
  R2                            1                              2
  RX                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D48V6, continuous
D48V7, continuous
D48V8, continuous
D48V9, continuous
D48V10, continuous
D48V11, continuous
D48V12, continuous
                                vv
clus                             ASIAN BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 19(11P11.2) MUTATED       0                         2     4
  DEL PEAK 19(11P11.2) WILD-TYPE     2                         5   142
D48V13, multiclass
                           clus
vv                          DEL PEAK 19(11P11.2) MUTATED
  ASIAN                                                0
  BLACK OR AFRICAN AMERICAN                            2
  WHITE                                                4
                           clus
vv                          DEL PEAK 19(11P11.2) WILD-TYPE
  ASIAN                                                  2
  BLACK OR AFRICAN AMERICAN                              5
  WHITE                                                142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 20(11Q23.2) MUTATION ANALYSIS
D49V1, continuous
                                vv
clus                              T2  T3  T4
  DEL PEAK 20(11Q23.2) MUTATED     7  17   3
  DEL PEAK 20(11Q23.2) WILD-TYPE 121 119   2
D49V2, multiclass
    clus
vv   DEL PEAK 20(11Q23.2) MUTATED DEL PEAK 20(11Q23.2) WILD-TYPE
  T2                            7                            121
  T3                           17                            119
  T4                            3                              2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D49V3, binary
                                cls
clus                               0   1
  DEL PEAK 20(11Q23.2) MUTATED    21   3
  DEL PEAK 20(11Q23.2) WILD-TYPE 180  21
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(11Q23.2) MUTATED     21    3
  DEL PEAK 20(11Q23.2) WILD-TYPE  180   21
   clus
vv  DEL PEAK 20(11Q23.2) MUTATED DEL PEAK 20(11Q23.2) WILD-TYPE
  0                           21                            180
  1                            3                             21
[1] 2 2
[1] FALSE
D49V4, binary
                                cls
clus                               0   1
  DEL PEAK 20(11Q23.2) MUTATED     1  26
  DEL PEAK 20(11Q23.2) WILD-TYPE   4 240
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(11Q23.2) MUTATED      1   26
  DEL PEAK 20(11Q23.2) WILD-TYPE    4  240
                                        clus
vv                                       DEL PEAK 20(11Q23.2) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                            1
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              26
                                        clus
vv                                       DEL PEAK 20(11Q23.2) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                              4
  PROSTATE ADENOCARCINOMA ACINAR TYPE                               240
[1] 2 2
[1] FALSE
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 20(11Q23.2) MUTATED    16   8   0   1
  DEL PEAK 20(11Q23.2) WILD-TYPE 176  49   3   5
D49V5, multiclass
    clus
vv   DEL PEAK 20(11Q23.2) MUTATED DEL PEAK 20(11Q23.2) WILD-TYPE
  R0                           16                            176
  R1                            8                             49
  R2                            0                              3
  RX                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D49V6, continuous
D49V7, continuous
D49V8, continuous
D49V9, continuous
D49V10, continuous
D49V11, continuous
D49V12, continuous
                                vv
clus                             ASIAN BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 20(11Q23.2) MUTATED       0                         1    19
  DEL PEAK 20(11Q23.2) WILD-TYPE     2                         6   127
D49V13, multiclass
                           clus
vv                          DEL PEAK 20(11Q23.2) MUTATED
  ASIAN                                                0
  BLACK OR AFRICAN AMERICAN                            1
  WHITE                                               19
                           clus
vv                          DEL PEAK 20(11Q23.2) WILD-TYPE
  ASIAN                                                  2
  BLACK OR AFRICAN AMERICAN                              6
  WHITE                                                127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 21(12P13.1) MUTATION ANALYSIS
D50V1, continuous
                                vv
clus                              T2  T3  T4
  DEL PEAK 21(12P13.1) MUTATED    17  36   2
  DEL PEAK 21(12P13.1) WILD-TYPE 111 100   3
D50V2, multiclass
    clus
vv   DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE
  T2                           17                            111
  T3                           36                            100
  T4                            2                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D50V3, binary
                                cls
clus                               0   1
  DEL PEAK 21(12P13.1) MUTATED    43   9
  DEL PEAK 21(12P13.1) WILD-TYPE 158  15
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(12P13.1) MUTATED     43    9
  DEL PEAK 21(12P13.1) WILD-TYPE  158   15
   clus
vv  DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE
  0                           43                            158
  1                            9                             15
[1] 2 2
[1] FALSE
D50V4, binary
                                cls
clus                               0   1
  DEL PEAK 21(12P13.1) MUTATED     2  53
  DEL PEAK 21(12P13.1) WILD-TYPE   3 213
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(12P13.1) MUTATED      2   53
  DEL PEAK 21(12P13.1) WILD-TYPE    3  213
                                        clus
vv                                       DEL PEAK 21(12P13.1) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                            2
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              53
                                        clus
vv                                       DEL PEAK 21(12P13.1) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                              3
  PROSTATE ADENOCARCINOMA ACINAR TYPE                               213
[1] 2 2
[1] FALSE
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 21(12P13.1) MUTATED    39  12   1   0
  DEL PEAK 21(12P13.1) WILD-TYPE 153  45   2   6
D50V5, multiclass
    clus
vv   DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE
  R0                           39                            153
  R1                           12                             45
  R2                            1                              2
  RX                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D50V6, continuous
D50V7, continuous
D50V8, continuous
D50V9, continuous
D50V10, continuous
D50V11, continuous
D50V12, continuous
                                vv
clus                             ASIAN BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 21(12P13.1) MUTATED       0                         1    30
  DEL PEAK 21(12P13.1) WILD-TYPE     2                         6   116
D50V13, multiclass
                           clus
vv                          DEL PEAK 21(12P13.1) MUTATED
  ASIAN                                                0
  BLACK OR AFRICAN AMERICAN                            1
  WHITE                                               30
                           clus
vv                          DEL PEAK 21(12P13.1) WILD-TYPE
  ASIAN                                                  2
  BLACK OR AFRICAN AMERICAN                              6
  WHITE                                                116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 22(12Q24.31) MUTATION ANALYSIS
D51V1, continuous
                                 vv
clus                               T2  T3  T4
  DEL PEAK 22(12Q24.31) MUTATED     7  12   1
  DEL PEAK 22(12Q24.31) WILD-TYPE 121 124   4
D51V2, multiclass
    clus
vv   DEL PEAK 22(12Q24.31) MUTATED DEL PEAK 22(12Q24.31) WILD-TYPE
  T2                             7                             121
  T3                            12                             124
  T4                             1                               4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D51V3, binary
                                 cls
clus                                0   1
  DEL PEAK 22(12Q24.31) MUTATED    16   3
  DEL PEAK 22(12Q24.31) WILD-TYPE 185  21
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 22(12Q24.31) MUTATED     16    3
  DEL PEAK 22(12Q24.31) WILD-TYPE  185   21
   clus
vv  DEL PEAK 22(12Q24.31) MUTATED DEL PEAK 22(12Q24.31) WILD-TYPE
  0                            16                             185
  1                             3                              21
[1] 2 2
[1] FALSE
D51V4, binary
                                 cls
clus                                0   1
  DEL PEAK 22(12Q24.31) MUTATED     1  19
  DEL PEAK 22(12Q24.31) WILD-TYPE   4 247
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 22(12Q24.31) MUTATED      1   19
  DEL PEAK 22(12Q24.31) WILD-TYPE    4  247
                                        clus
vv                                       DEL PEAK 22(12Q24.31) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                             1
  PROSTATE ADENOCARCINOMA ACINAR TYPE                               19
                                        clus
vv                                       DEL PEAK 22(12Q24.31) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                               4
  PROSTATE ADENOCARCINOMA ACINAR TYPE                                247
[1] 2 2
[1] FALSE
                                 vv
clus                               R0  R1  R2  RX
  DEL PEAK 22(12Q24.31) MUTATED    15   4   0   0
  DEL PEAK 22(12Q24.31) WILD-TYPE 177  53   3   6
D51V5, multiclass
    clus
vv   DEL PEAK 22(12Q24.31) MUTATED DEL PEAK 22(12Q24.31) WILD-TYPE
  R0                            15                             177
  R1                             4                              53
  R2                             0                               3
  RX                             0                               6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D51V6, continuous
D51V7, continuous
D51V8, continuous
D51V9, continuous
D51V10, continuous
D51V11, continuous
D51V12, continuous
                                 vv
clus                              ASIAN BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 22(12Q24.31) MUTATED       0                         0    13
  DEL PEAK 22(12Q24.31) WILD-TYPE     2                         7   133
D51V13, multiclass
                           clus
vv                          DEL PEAK 22(12Q24.31) MUTATED
  ASIAN                                                 0
  BLACK OR AFRICAN AMERICAN                             0
  WHITE                                                13
                           clus
vv                          DEL PEAK 22(12Q24.31) WILD-TYPE
  ASIAN                                                   2
  BLACK OR AFRICAN AMERICAN                               7
  WHITE                                                 133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 23(13Q14.13) MUTATION ANALYSIS
D52V1, continuous
                                 vv
clus                              T2 T3 T4
  DEL PEAK 23(13Q14.13) MUTATED   50 63  3
  DEL PEAK 23(13Q14.13) WILD-TYPE 78 73  2
D52V2, multiclass
    clus
vv   DEL PEAK 23(13Q14.13) MUTATED DEL PEAK 23(13Q14.13) WILD-TYPE
  T2                            50                              78
  T3                            63                              73
  T4                             3                               2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D52V3, binary
                                 cls
clus                                0   1
  DEL PEAK 23(13Q14.13) MUTATED    87  14
  DEL PEAK 23(13Q14.13) WILD-TYPE 114  10
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 23(13Q14.13) MUTATED     87   14
  DEL PEAK 23(13Q14.13) WILD-TYPE  114   10
   clus
vv  DEL PEAK 23(13Q14.13) MUTATED DEL PEAK 23(13Q14.13) WILD-TYPE
  0                            87                             114
  1                            14                              10
[1] 2 2
[1] FALSE
D52V4, binary
                                 cls
clus                                0   1
  DEL PEAK 23(13Q14.13) MUTATED     0 116
  DEL PEAK 23(13Q14.13) WILD-TYPE   5 150
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 23(13Q14.13) MUTATED      0  116
  DEL PEAK 23(13Q14.13) WILD-TYPE    5  150
                                        clus
vv                                       DEL PEAK 23(13Q14.13) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                             0
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              116
                                        clus
vv                                       DEL PEAK 23(13Q14.13) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                               5
  PROSTATE ADENOCARCINOMA ACINAR TYPE                                150
[1] 2 2
[1] FALSE
                                 vv
clus                               R0  R1  R2  RX
  DEL PEAK 23(13Q14.13) MUTATED    71  33   1   3
  DEL PEAK 23(13Q14.13) WILD-TYPE 121  24   2   3
D52V5, multiclass
    clus
vv   DEL PEAK 23(13Q14.13) MUTATED DEL PEAK 23(13Q14.13) WILD-TYPE
  R0                            71                             121
  R1                            33                              24
  R2                             1                               2
  RX                             3                               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D52V6, continuous
D52V7, continuous
D52V8, continuous
D52V9, continuous
D52V10, continuous
D52V11, continuous
D52V12, continuous
                                 vv
clus                              ASIAN BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 23(13Q14.13) MUTATED       1                         7    64
  DEL PEAK 23(13Q14.13) WILD-TYPE     1                         0    82
D52V13, multiclass
                           clus
vv                          DEL PEAK 23(13Q14.13) MUTATED
  ASIAN                                                 1
  BLACK OR AFRICAN AMERICAN                             7
  WHITE                                                64
                           clus
vv                          DEL PEAK 23(13Q14.13) WILD-TYPE
  ASIAN                                                   1
  BLACK OR AFRICAN AMERICAN                               0
  WHITE                                                  82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 24(13Q22.1) MUTATION ANALYSIS
D53V1, continuous
                                vv
clus                             T2 T3 T4
  DEL PEAK 24(13Q22.1) MUTATED   39 46  4
  DEL PEAK 24(13Q22.1) WILD-TYPE 89 90  1
D53V2, multiclass
    clus
vv   DEL PEAK 24(13Q22.1) MUTATED DEL PEAK 24(13Q22.1) WILD-TYPE
  T2                           39                             89
  T3                           46                             90
  T4                            4                              1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D53V3, binary
                                cls
clus                               0   1
  DEL PEAK 24(13Q22.1) MUTATED    67  12
  DEL PEAK 24(13Q22.1) WILD-TYPE 134  12
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(13Q22.1) MUTATED     67   12
  DEL PEAK 24(13Q22.1) WILD-TYPE  134   12
   clus
vv  DEL PEAK 24(13Q22.1) MUTATED DEL PEAK 24(13Q22.1) WILD-TYPE
  0                           67                            134
  1                           12                             12
[1] 2 2
[1] FALSE
D53V4, binary
                                cls
clus                               0   1
  DEL PEAK 24(13Q22.1) MUTATED     0  89
  DEL PEAK 24(13Q22.1) WILD-TYPE   5 177
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(13Q22.1) MUTATED      0   89
  DEL PEAK 24(13Q22.1) WILD-TYPE    5  177
                                        clus
vv                                       DEL PEAK 24(13Q22.1) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                            0
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              89
                                        clus
vv                                       DEL PEAK 24(13Q22.1) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                              5
  PROSTATE ADENOCARCINOMA ACINAR TYPE                               177
[1] 2 2
[1] FALSE
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 24(13Q22.1) MUTATED    56  24   1   2
  DEL PEAK 24(13Q22.1) WILD-TYPE 136  33   2   4
D53V5, multiclass
    clus
vv   DEL PEAK 24(13Q22.1) MUTATED DEL PEAK 24(13Q22.1) WILD-TYPE
  R0                           56                            136
  R1                           24                             33
  R2                            1                              2
  RX                            2                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D53V6, continuous
D53V7, continuous
D53V8, continuous
D53V9, continuous
D53V10, continuous
D53V11, continuous
D53V12, continuous
                                vv
clus                             ASIAN BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 24(13Q22.1) MUTATED       0                         7    51
  DEL PEAK 24(13Q22.1) WILD-TYPE     2                         0    95
D53V13, multiclass
                           clus
vv                          DEL PEAK 24(13Q22.1) MUTATED
  ASIAN                                                0
  BLACK OR AFRICAN AMERICAN                            7
  WHITE                                               51
                           clus
vv                          DEL PEAK 24(13Q22.1) WILD-TYPE
  ASIAN                                                  2
  BLACK OR AFRICAN AMERICAN                              0
  WHITE                                                 95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 25(15Q21.3) MUTATION ANALYSIS
D54V1, continuous
                                vv
clus                              T2  T3  T4
  DEL PEAK 25(15Q21.3) MUTATED     9  20   1
  DEL PEAK 25(15Q21.3) WILD-TYPE 119 116   4
D54V2, multiclass
    clus
vv   DEL PEAK 25(15Q21.3) MUTATED DEL PEAK 25(15Q21.3) WILD-TYPE
  T2                            9                            119
  T3                           20                            116
  T4                            1                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D54V3, binary
                                cls
clus                               0   1
  DEL PEAK 25(15Q21.3) MUTATED    18   7
  DEL PEAK 25(15Q21.3) WILD-TYPE 183  17
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(15Q21.3) MUTATED     18    7
  DEL PEAK 25(15Q21.3) WILD-TYPE  183   17
   clus
vv  DEL PEAK 25(15Q21.3) MUTATED DEL PEAK 25(15Q21.3) WILD-TYPE
  0                           18                            183
  1                            7                             17
[1] 2 2
[1] FALSE
D54V4, binary
                                cls
clus                               0   1
  DEL PEAK 25(15Q21.3) MUTATED     1  29
  DEL PEAK 25(15Q21.3) WILD-TYPE   4 237
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(15Q21.3) MUTATED      1   29
  DEL PEAK 25(15Q21.3) WILD-TYPE    4  237
                                        clus
vv                                       DEL PEAK 25(15Q21.3) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                            1
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              29
                                        clus
vv                                       DEL PEAK 25(15Q21.3) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                              4
  PROSTATE ADENOCARCINOMA ACINAR TYPE                               237
[1] 2 2
[1] FALSE
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 25(15Q21.3) MUTATED    21   7   1   0
  DEL PEAK 25(15Q21.3) WILD-TYPE 171  50   2   6
D54V5, multiclass
    clus
vv   DEL PEAK 25(15Q21.3) MUTATED DEL PEAK 25(15Q21.3) WILD-TYPE
  R0                           21                            171
  R1                            7                             50
  R2                            1                              2
  RX                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D54V6, continuous
D54V7, continuous
D54V8, continuous
D54V9, continuous
D54V10, continuous
D54V11, continuous
D54V12, continuous
                                vv
clus                             ASIAN BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 25(15Q21.3) MUTATED       0                         0    17
  DEL PEAK 25(15Q21.3) WILD-TYPE     2                         7   129
D54V13, multiclass
                           clus
vv                          DEL PEAK 25(15Q21.3) MUTATED
  ASIAN                                                0
  BLACK OR AFRICAN AMERICAN                            0
  WHITE                                               17
                           clus
vv                          DEL PEAK 25(15Q21.3) WILD-TYPE
  ASIAN                                                  2
  BLACK OR AFRICAN AMERICAN                              7
  WHITE                                                129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 26(16Q22.3) MUTATION ANALYSIS
D55V1, continuous
                                vv
clus                             T2 T3 T4
  DEL PEAK 26(16Q22.3) MUTATED   35 57  1
  DEL PEAK 26(16Q22.3) WILD-TYPE 93 79  4
D55V2, multiclass
    clus
vv   DEL PEAK 26(16Q22.3) MUTATED DEL PEAK 26(16Q22.3) WILD-TYPE
  T2                           35                             93
  T3                           57                             79
  T4                            1                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D55V3, binary
                                cls
clus                               0   1
  DEL PEAK 26(16Q22.3) MUTATED    70  13
  DEL PEAK 26(16Q22.3) WILD-TYPE 131  11
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(16Q22.3) MUTATED     70   13
  DEL PEAK 26(16Q22.3) WILD-TYPE  131   11
   clus
vv  DEL PEAK 26(16Q22.3) MUTATED DEL PEAK 26(16Q22.3) WILD-TYPE
  0                           70                            131
  1                           13                             11
[1] 2 2
[1] FALSE
D55V4, binary
                                cls
clus                               0   1
  DEL PEAK 26(16Q22.3) MUTATED     2  91
  DEL PEAK 26(16Q22.3) WILD-TYPE   3 175
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(16Q22.3) MUTATED      2   91
  DEL PEAK 26(16Q22.3) WILD-TYPE    3  175
                                        clus
vv                                       DEL PEAK 26(16Q22.3) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                            2
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              91
                                        clus
vv                                       DEL PEAK 26(16Q22.3) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                              3
  PROSTATE ADENOCARCINOMA ACINAR TYPE                               175
[1] 2 2
[1] FALSE
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 26(16Q22.3) MUTATED    64  21   1   2
  DEL PEAK 26(16Q22.3) WILD-TYPE 128  36   2   4
D55V5, multiclass
    clus
vv   DEL PEAK 26(16Q22.3) MUTATED DEL PEAK 26(16Q22.3) WILD-TYPE
  R0                           64                            128
  R1                           21                             36
  R2                            1                              2
  RX                            2                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D55V6, continuous
D55V7, continuous
D55V8, continuous
D55V9, continuous
D55V10, continuous
D55V11, continuous
D55V12, continuous
                                vv
clus                             ASIAN BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 26(16Q22.3) MUTATED       0                         3    48
  DEL PEAK 26(16Q22.3) WILD-TYPE     2                         4    98
D55V13, multiclass
                           clus
vv                          DEL PEAK 26(16Q22.3) MUTATED
  ASIAN                                                0
  BLACK OR AFRICAN AMERICAN                            3
  WHITE                                               48
                           clus
vv                          DEL PEAK 26(16Q22.3) WILD-TYPE
  ASIAN                                                  2
  BLACK OR AFRICAN AMERICAN                              4
  WHITE                                                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 27(16Q24.1) MUTATION ANALYSIS
D56V1, continuous
                                vv
clus                             T2 T3 T4
  DEL PEAK 27(16Q24.1) MUTATED   39 65  1
  DEL PEAK 27(16Q24.1) WILD-TYPE 89 71  4
D56V2, multiclass
    clus
vv   DEL PEAK 27(16Q24.1) MUTATED DEL PEAK 27(16Q24.1) WILD-TYPE
  T2                           39                             89
  T3                           65                             71
  T4                            1                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D56V3, binary
                                cls
clus                               0   1
  DEL PEAK 27(16Q24.1) MUTATED    81  14
  DEL PEAK 27(16Q24.1) WILD-TYPE 120  10
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(16Q24.1) MUTATED     81   14
  DEL PEAK 27(16Q24.1) WILD-TYPE  120   10
   clus
vv  DEL PEAK 27(16Q24.1) MUTATED DEL PEAK 27(16Q24.1) WILD-TYPE
  0                           81                            120
  1                           14                             10
[1] 2 2
[1] FALSE
D56V4, binary
                                cls
clus                               0   1
  DEL PEAK 27(16Q24.1) MUTATED     2 103
  DEL PEAK 27(16Q24.1) WILD-TYPE   3 163
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(16Q24.1) MUTATED      2  103
  DEL PEAK 27(16Q24.1) WILD-TYPE    3  163
                                        clus
vv                                       DEL PEAK 27(16Q24.1) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                            2
  PROSTATE ADENOCARCINOMA ACINAR TYPE                             103
                                        clus
vv                                       DEL PEAK 27(16Q24.1) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                              3
  PROSTATE ADENOCARCINOMA ACINAR TYPE                               163
[1] 2 2
[1] FALSE
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 27(16Q24.1) MUTATED    76  21   1   2
  DEL PEAK 27(16Q24.1) WILD-TYPE 116  36   2   4
D56V5, multiclass
    clus
vv   DEL PEAK 27(16Q24.1) MUTATED DEL PEAK 27(16Q24.1) WILD-TYPE
  R0                           76                            116
  R1                           21                             36
  R2                            1                              2
  RX                            2                              4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D56V6, continuous
D56V7, continuous
D56V8, continuous
D56V9, continuous
D56V10, continuous
D56V11, continuous
D56V12, continuous
                                vv
clus                             ASIAN BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 27(16Q24.1) MUTATED       1                         3    61
  DEL PEAK 27(16Q24.1) WILD-TYPE     1                         4    85
D56V13, multiclass
                           clus
vv                          DEL PEAK 27(16Q24.1) MUTATED
  ASIAN                                                1
  BLACK OR AFRICAN AMERICAN                            3
  WHITE                                               61
                           clus
vv                          DEL PEAK 27(16Q24.1) WILD-TYPE
  ASIAN                                                  1
  BLACK OR AFRICAN AMERICAN                              4
  WHITE                                                 85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 28(17P13.1) MUTATION ANALYSIS
D57V1, continuous
                                vv
clus                              T2  T3  T4
  DEL PEAK 28(17P13.1) MUTATED    22  45   2
  DEL PEAK 28(17P13.1) WILD-TYPE 106  91   3
D57V2, multiclass
    clus
vv   DEL PEAK 28(17P13.1) MUTATED DEL PEAK 28(17P13.1) WILD-TYPE
  T2                           22                            106
  T3                           45                             91
  T4                            2                              3
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D57V3, binary
                                cls
clus                               0   1
  DEL PEAK 28(17P13.1) MUTATED    50  12
  DEL PEAK 28(17P13.1) WILD-TYPE 151  12
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(17P13.1) MUTATED     50   12
  DEL PEAK 28(17P13.1) WILD-TYPE  151   12
   clus
vv  DEL PEAK 28(17P13.1) MUTATED DEL PEAK 28(17P13.1) WILD-TYPE
  0                           50                            151
  1                           12                             12
[1] 2 2
[1] FALSE
D57V4, binary
                                cls
clus                               0   1
  DEL PEAK 28(17P13.1) MUTATED     1  68
  DEL PEAK 28(17P13.1) WILD-TYPE   4 198
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(17P13.1) MUTATED      1   68
  DEL PEAK 28(17P13.1) WILD-TYPE    4  198
                                        clus
vv                                       DEL PEAK 28(17P13.1) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                            1
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              68
                                        clus
vv                                       DEL PEAK 28(17P13.1) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                              4
  PROSTATE ADENOCARCINOMA ACINAR TYPE                               198
[1] 2 2
[1] FALSE
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 28(17P13.1) MUTATED    49  16   0   1
  DEL PEAK 28(17P13.1) WILD-TYPE 143  41   3   5
D57V5, multiclass
    clus
vv   DEL PEAK 28(17P13.1) MUTATED DEL PEAK 28(17P13.1) WILD-TYPE
  R0                           49                            143
  R1                           16                             41
  R2                            0                              3
  RX                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D57V6, continuous
D57V7, continuous
D57V8, continuous
D57V9, continuous
D57V10, continuous
D57V11, continuous
D57V12, continuous
                                vv
clus                             ASIAN BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 28(17P13.1) MUTATED       0                         1    39
  DEL PEAK 28(17P13.1) WILD-TYPE     2                         6   107
D57V13, multiclass
                           clus
vv                          DEL PEAK 28(17P13.1) MUTATED
  ASIAN                                                0
  BLACK OR AFRICAN AMERICAN                            1
  WHITE                                               39
                           clus
vv                          DEL PEAK 28(17P13.1) WILD-TYPE
  ASIAN                                                  2
  BLACK OR AFRICAN AMERICAN                              6
  WHITE                                                107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 29(17Q21.31) MUTATION ANALYSIS
D58V1, continuous
                                 vv
clus                               T2  T3  T4
  DEL PEAK 29(17Q21.31) MUTATED    23  29   1
  DEL PEAK 29(17Q21.31) WILD-TYPE 105 107   4
D58V2, multiclass
    clus
vv   DEL PEAK 29(17Q21.31) MUTATED DEL PEAK 29(17Q21.31) WILD-TYPE
  T2                            23                             105
  T3                            29                             107
  T4                             1                               4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D58V3, binary
                                 cls
clus                                0   1
  DEL PEAK 29(17Q21.31) MUTATED    39   4
  DEL PEAK 29(17Q21.31) WILD-TYPE 162  20
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 29(17Q21.31) MUTATED     39    4
  DEL PEAK 29(17Q21.31) WILD-TYPE  162   20
   clus
vv  DEL PEAK 29(17Q21.31) MUTATED DEL PEAK 29(17Q21.31) WILD-TYPE
  0                            39                             162
  1                             4                              20
[1] 2 2
[1] FALSE
D58V4, binary
                                 cls
clus                                0   1
  DEL PEAK 29(17Q21.31) MUTATED     0  53
  DEL PEAK 29(17Q21.31) WILD-TYPE   5 213
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 29(17Q21.31) MUTATED      0   53
  DEL PEAK 29(17Q21.31) WILD-TYPE    5  213
                                        clus
vv                                       DEL PEAK 29(17Q21.31) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                             0
  PROSTATE ADENOCARCINOMA ACINAR TYPE                               53
                                        clus
vv                                       DEL PEAK 29(17Q21.31) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                               5
  PROSTATE ADENOCARCINOMA ACINAR TYPE                                213
[1] 2 2
[1] FALSE
                                 vv
clus                               R0  R1  R2  RX
  DEL PEAK 29(17Q21.31) MUTATED    42   9   1   0
  DEL PEAK 29(17Q21.31) WILD-TYPE 150  48   2   6
D58V5, multiclass
    clus
vv   DEL PEAK 29(17Q21.31) MUTATED DEL PEAK 29(17Q21.31) WILD-TYPE
  R0                            42                             150
  R1                             9                              48
  R2                             1                               2
  RX                             0                               6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D58V6, continuous
D58V7, continuous
D58V8, continuous
D58V9, continuous
D58V10, continuous
D58V11, continuous
D58V12, continuous
                                 vv
clus                              ASIAN BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 29(17Q21.31) MUTATED       0                         2    29
  DEL PEAK 29(17Q21.31) WILD-TYPE     2                         5   117
D58V13, multiclass
                           clus
vv                          DEL PEAK 29(17Q21.31) MUTATED
  ASIAN                                                 0
  BLACK OR AFRICAN AMERICAN                             2
  WHITE                                                29
                           clus
vv                          DEL PEAK 29(17Q21.31) WILD-TYPE
  ASIAN                                                   2
  BLACK OR AFRICAN AMERICAN                               5
  WHITE                                                 117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 30(18Q22.1) MUTATION ANALYSIS
D59V1, continuous
                                vv
clus                              T2  T3  T4
  DEL PEAK 30(18Q22.1) MUTATED    27  40   1
  DEL PEAK 30(18Q22.1) WILD-TYPE 101  96   4
D59V2, multiclass
    clus
vv   DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE
  T2                           27                            101
  T3                           40                             96
  T4                            1                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D59V3, binary
                                cls
clus                               0   1
  DEL PEAK 30(18Q22.1) MUTATED    50   8
  DEL PEAK 30(18Q22.1) WILD-TYPE 151  16
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 30(18Q22.1) MUTATED     50    8
  DEL PEAK 30(18Q22.1) WILD-TYPE  151   16
   clus
vv  DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE
  0                           50                            151
  1                            8                             16
[1] 2 2
[1] FALSE
D59V4, binary
                                cls
clus                               0   1
  DEL PEAK 30(18Q22.1) MUTATED     2  66
  DEL PEAK 30(18Q22.1) WILD-TYPE   3 200
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 30(18Q22.1) MUTATED      2   66
  DEL PEAK 30(18Q22.1) WILD-TYPE    3  200
                                        clus
vv                                       DEL PEAK 30(18Q22.1) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                            2
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              66
                                        clus
vv                                       DEL PEAK 30(18Q22.1) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                              3
  PROSTATE ADENOCARCINOMA ACINAR TYPE                               200
[1] 2 2
[1] FALSE
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 30(18Q22.1) MUTATED    47  18   0   0
  DEL PEAK 30(18Q22.1) WILD-TYPE 145  39   3   6
D59V5, multiclass
    clus
vv   DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE
  R0                           47                            145
  R1                           18                             39
  R2                            0                              3
  RX                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D59V6, continuous
D59V7, continuous
D59V8, continuous
D59V9, continuous
D59V10, continuous
D59V11, continuous
D59V12, continuous
                                vv
clus                             ASIAN BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 30(18Q22.1) MUTATED       0                         4    36
  DEL PEAK 30(18Q22.1) WILD-TYPE     2                         3   110
D59V13, multiclass
                           clus
vv                          DEL PEAK 30(18Q22.1) MUTATED
  ASIAN                                                0
  BLACK OR AFRICAN AMERICAN                            4
  WHITE                                               36
                           clus
vv                          DEL PEAK 30(18Q22.1) WILD-TYPE
  ASIAN                                                  2
  BLACK OR AFRICAN AMERICAN                              3
  WHITE                                                110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 31(19Q13.2) MUTATION ANALYSIS
D60V1, continuous
                                vv
clus                              T2  T3  T4
  DEL PEAK 31(19Q13.2) MUTATED     8  15   1
  DEL PEAK 31(19Q13.2) WILD-TYPE 120 121   4
D60V2, multiclass
    clus
vv   DEL PEAK 31(19Q13.2) MUTATED DEL PEAK 31(19Q13.2) WILD-TYPE
  T2                            8                            120
  T3                           15                            121
  T4                            1                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D60V3, binary
                                cls
clus                               0   1
  DEL PEAK 31(19Q13.2) MUTATED    19   5
  DEL PEAK 31(19Q13.2) WILD-TYPE 182  19
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(19Q13.2) MUTATED     19    5
  DEL PEAK 31(19Q13.2) WILD-TYPE  182   19
   clus
vv  DEL PEAK 31(19Q13.2) MUTATED DEL PEAK 31(19Q13.2) WILD-TYPE
  0                           19                            182
  1                            5                             19
[1] 2 2
[1] FALSE
D60V4, binary
                                cls
clus                               0   1
  DEL PEAK 31(19Q13.2) MUTATED     0  24
  DEL PEAK 31(19Q13.2) WILD-TYPE   5 242
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(19Q13.2) MUTATED      0   24
  DEL PEAK 31(19Q13.2) WILD-TYPE    5  242
                                        clus
vv                                       DEL PEAK 31(19Q13.2) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                            0
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              24
                                        clus
vv                                       DEL PEAK 31(19Q13.2) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                              5
  PROSTATE ADENOCARCINOMA ACINAR TYPE                               242
[1] 2 2
[1] FALSE
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 31(19Q13.2) MUTATED    14  10   0   0
  DEL PEAK 31(19Q13.2) WILD-TYPE 178  47   3   6
D60V5, multiclass
    clus
vv   DEL PEAK 31(19Q13.2) MUTATED DEL PEAK 31(19Q13.2) WILD-TYPE
  R0                           14                            178
  R1                           10                             47
  R2                            0                              3
  RX                            0                              6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D60V6, continuous
D60V7, continuous
D60V8, continuous
D60V9, continuous
D60V10, continuous
D60V11, continuous
D60V12, continuous
                                vv
clus                             ASIAN BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 31(19Q13.2) MUTATED       0                         0    11
  DEL PEAK 31(19Q13.2) WILD-TYPE     2                         7   135
D60V13, multiclass
                           clus
vv                          DEL PEAK 31(19Q13.2) MUTATED
  ASIAN                                                0
  BLACK OR AFRICAN AMERICAN                            0
  WHITE                                               11
                           clus
vv                          DEL PEAK 31(19Q13.2) WILD-TYPE
  ASIAN                                                  2
  BLACK OR AFRICAN AMERICAN                              7
  WHITE                                                135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 32(21Q22.2) MUTATION ANALYSIS
D61V1, continuous
                                vv
clus                              T2  T3  T4
  DEL PEAK 32(21Q22.2) MUTATED     8  17   1
  DEL PEAK 32(21Q22.2) WILD-TYPE 120 119   4
D61V2, multiclass
    clus
vv   DEL PEAK 32(21Q22.2) MUTATED DEL PEAK 32(21Q22.2) WILD-TYPE
  T2                            8                            120
  T3                           17                            119
  T4                            1                              4
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D61V3, binary
                                cls
clus                               0   1
  DEL PEAK 32(21Q22.2) MUTATED    14   6
  DEL PEAK 32(21Q22.2) WILD-TYPE 187  18
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(21Q22.2) MUTATED     14    6
  DEL PEAK 32(21Q22.2) WILD-TYPE  187   18
   clus
vv  DEL PEAK 32(21Q22.2) MUTATED DEL PEAK 32(21Q22.2) WILD-TYPE
  0                           14                            187
  1                            6                             18
[1] 2 2
[1] FALSE
D61V4, binary
                                cls
clus                               0   1
  DEL PEAK 32(21Q22.2) MUTATED     1  25
  DEL PEAK 32(21Q22.2) WILD-TYPE   4 241
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(21Q22.2) MUTATED      1   25
  DEL PEAK 32(21Q22.2) WILD-TYPE    4  241
                                        clus
vv                                       DEL PEAK 32(21Q22.2) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                            1
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              25
                                        clus
vv                                       DEL PEAK 32(21Q22.2) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                              4
  PROSTATE ADENOCARCINOMA ACINAR TYPE                               241
[1] 2 2
[1] FALSE
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 32(21Q22.2) MUTATED    19   5   0   1
  DEL PEAK 32(21Q22.2) WILD-TYPE 173  52   3   5
D61V5, multiclass
    clus
vv   DEL PEAK 32(21Q22.2) MUTATED DEL PEAK 32(21Q22.2) WILD-TYPE
  R0                           19                            173
  R1                            5                             52
  R2                            0                              3
  RX                            1                              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D61V6, continuous
D61V7, continuous
D61V8, continuous
D61V9, continuous
D61V10, continuous
D61V11, continuous
D61V12, continuous
                                vv
clus                             ASIAN BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 32(21Q22.2) MUTATED       1                         2    15
  DEL PEAK 32(21Q22.2) WILD-TYPE     1                         5   131
D61V13, multiclass
                           clus
vv                          DEL PEAK 32(21Q22.2) MUTATED
  ASIAN                                                1
  BLACK OR AFRICAN AMERICAN                            2
  WHITE                                               15
                           clus
vv                          DEL PEAK 32(21Q22.2) WILD-TYPE
  ASIAN                                                  1
  BLACK OR AFRICAN AMERICAN                              5
  WHITE                                                131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 33(21Q22.3) MUTATION ANALYSIS
D62V1, continuous
                                vv
clus                              T2  T3  T4
  DEL PEAK 33(21Q22.3) MUTATED    28  45   3
  DEL PEAK 33(21Q22.3) WILD-TYPE 100  91   2
D62V2, multiclass
    clus
vv   DEL PEAK 33(21Q22.3) MUTATED DEL PEAK 33(21Q22.3) WILD-TYPE
  T2                           28                            100
  T3                           45                             91
  T4                            3                              2
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D62V3, binary
                                cls
clus                               0   1
  DEL PEAK 33(21Q22.3) MUTATED    51  14
  DEL PEAK 33(21Q22.3) WILD-TYPE 150  10
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 33(21Q22.3) MUTATED     51   14
  DEL PEAK 33(21Q22.3) WILD-TYPE  150   10
   clus
vv  DEL PEAK 33(21Q22.3) MUTATED DEL PEAK 33(21Q22.3) WILD-TYPE
  0                           51                            150
  1                           14                             10
[1] 2 2
[1] FALSE
D62V4, binary
                                cls
clus                               0   1
  DEL PEAK 33(21Q22.3) MUTATED     2  75
  DEL PEAK 33(21Q22.3) WILD-TYPE   3 191
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 33(21Q22.3) MUTATED      2   75
  DEL PEAK 33(21Q22.3) WILD-TYPE    3  191
                                        clus
vv                                       DEL PEAK 33(21Q22.3) MUTATED
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                            2
  PROSTATE ADENOCARCINOMA ACINAR TYPE                              75
                                        clus
vv                                       DEL PEAK 33(21Q22.3) WILD-TYPE
  PROSTATE ADENOCARCINOMA  OTHER SUBTYPE                              3
  PROSTATE ADENOCARCINOMA ACINAR TYPE                               191
[1] 2 2
[1] FALSE
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 33(21Q22.3) MUTATED    55  15   1   4
  DEL PEAK 33(21Q22.3) WILD-TYPE 137  42   2   2
D62V5, multiclass
    clus
vv   DEL PEAK 33(21Q22.3) MUTATED DEL PEAK 33(21Q22.3) WILD-TYPE
  R0                           55                            137
  R1                           15                             42
  R2                            1                              2
  RX                            4                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
D62V6, continuous
D62V7, continuous
D62V8, continuous
D62V9, continuous
D62V10, continuous
D62V11, continuous
D62V12, continuous
                                vv
clus                             ASIAN BLACK OR AFRICAN AMERICAN WHITE
  DEL PEAK 33(21Q22.3) MUTATED       2                         1    47
  DEL PEAK 33(21Q22.3) WILD-TYPE     0                         6    99
D62V13, multiclass
                           clus
vv                          DEL PEAK 33(21Q22.3) MUTATED
  ASIAN                                                2
  BLACK OR AFRICAN AMERICAN                            1
  WHITE                                               47
                           clus
vv                          DEL PEAK 33(21Q22.3) WILD-TYPE
  ASIAN                                                  0
  BLACK OR AFRICAN AMERICAN                              6
  WHITE                                                 99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
