
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events_Nozzle/broadinstitute.org/cancer.genome.analysis/10466/19/GDAC_Correlate_Genomic_Events_NozzleReport.R")
> result <- create.report.html("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events_Nozzle/broadinstitute.org/cancer.genome.analysis/10466/19/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iF=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/PRAD-TP/10014157/analysis.results.RData", "-nV=Nozzle.R1", "-gE=CLI_CNVFOCAL")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
                         V1                          V2 
                      "AGE"         "PATHOLOGY.T.STAGE" 
                         V3                          V4 
        "PATHOLOGY.N.STAGE"         "HISTOLOGICAL.TYPE" 
                         V5                          V6 
"COMPLETENESS.OF.RESECTION"     "NUMBER.OF.LYMPH.NODES" 
                         V7                          V8 
   "GLEASON_SCORE_COMBINED"     "GLEASON_SCORE_PRIMARY" 
                         V9                         V10 
  "GLEASON_SCORE_SECONDARY"             "GLEASON_SCORE" 
                        V11                         V12 
         "PSA_RESULT_PREOP"                 "PSA_VALUE" 
                        V13 
                     "RACE" 
> q(save="no")
