[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "dx" ""  
[1] "dx" " " 
[1] "dx" " " 
                          Clinical feature           
AGE                       "AGE"                      
PATHOLOGY.T.STAGE         "PATHOLOGY T STAGE"        
PATHOLOGY.N.STAGE         "PATHOLOGY N STAGE"        
HISTOLOGICAL.TYPE         "HISTOLOGICAL TYPE"        
COMPLETENESS.OF.RESECTION "COMPLETENESS OF RESECTION"
NUMBER.OF.LYMPH.NODES     "NUMBER OF LYMPH NODES"    
GLEASON_SCORE_COMBINED    "GLEASON_SCORE_COMBINED"   
GLEASON_SCORE_PRIMARY     "GLEASON_SCORE_PRIMARY"    
GLEASON_SCORE_SECONDARY   "GLEASON_SCORE_SECONDARY"  
GLEASON_SCORE             "GLEASON_SCORE"            
PSA_RESULT_PREOP          "PSA_RESULT_PREOP"         
PSA_VALUE                 "PSA_VALUE"                
RACE                      "RACE"                     
                          Statistical test            Significant genes
AGE                       "Spearman correlation test" "N=2"            
PATHOLOGY.T.STAGE         "Spearman correlation test" "N=278"          
PATHOLOGY.N.STAGE         "Wilcoxon test"             "N=4"            
HISTOLOGICAL.TYPE         "Wilcoxon test"             "N=0"            
COMPLETENESS.OF.RESECTION "Kruskal-Wallis test"       "N=0"            
NUMBER.OF.LYMPH.NODES     "Spearman correlation test" "N=6"            
GLEASON_SCORE_COMBINED    "Spearman correlation test" "N=461"          
GLEASON_SCORE_PRIMARY     "Spearman correlation test" "N=439"          
GLEASON_SCORE_SECONDARY   "Spearman correlation test" "N=3"            
GLEASON_SCORE             "Spearman correlation test" "N=495"          
PSA_RESULT_PREOP          "Spearman correlation test" "N=103"          
PSA_VALUE                 "Spearman correlation test" "N=5"            
RACE                      "Kruskal-Wallis test"       "N=0"            
                          Associated with               
AGE                       "older"                       
PATHOLOGY.T.STAGE         "higher stage"                
PATHOLOGY.N.STAGE         "class1"                      
HISTOLOGICAL.TYPE         " "                           
COMPLETENESS.OF.RESECTION " "                           
NUMBER.OF.LYMPH.NODES     "higher number.of.lymph.nodes"
GLEASON_SCORE_COMBINED    "higher score"                
GLEASON_SCORE_PRIMARY     "higher score"                
GLEASON_SCORE_SECONDARY   "higher score"                
GLEASON_SCORE             "higher score"                
PSA_RESULT_PREOP          "higher psa_result_preop"     
PSA_VALUE                 "higher psa_value"            
RACE                      " "                           
                          &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
AGE                       "N=2"                                                                                     
PATHOLOGY.T.STAGE         "N=131"                                                                                   
PATHOLOGY.N.STAGE         "N=4"                                                                                     
HISTOLOGICAL.TYPE         " "                                                                                       
COMPLETENESS.OF.RESECTION " "                                                                                       
NUMBER.OF.LYMPH.NODES     "N=1"                                                                                     
GLEASON_SCORE_COMBINED    "N=311"                                                                                   
GLEASON_SCORE_PRIMARY     "N=185"                                                                                   
GLEASON_SCORE_SECONDARY   "N=3"                                                                                     
GLEASON_SCORE             "N=334"                                                                                   
PSA_RESULT_PREOP          "N=28"                                                                                    
PSA_VALUE                 "N=2"                                                                                     
RACE                      " "                                                                                       
                          Associated with                      
AGE                       "younger"                     "N=0"  
PATHOLOGY.T.STAGE         "lower stage"                 "N=147"
PATHOLOGY.N.STAGE         "class0"                      "N=0"  
HISTOLOGICAL.TYPE         " "                           " "    
COMPLETENESS.OF.RESECTION " "                           " "    
NUMBER.OF.LYMPH.NODES     "lower number.of.lymph.nodes" "N=5"  
GLEASON_SCORE_COMBINED    "lower score"                 "N=150"
GLEASON_SCORE_PRIMARY     "lower score"                 "N=254"
GLEASON_SCORE_SECONDARY   "lower score"                 "N=0"  
GLEASON_SCORE             "lower score"                 "N=161"
PSA_RESULT_PREOP          "lower psa_result_preop"      "N=75" 
PSA_VALUE                 "lower psa_value"             "N=3"  
RACE                      " "                           " "    
