		Clinical Features	AGE		PATHOLOGY.T.STAGE		PATHOLOGY.N.STAGE		HISTOLOGICAL.TYPE		COMPLETENESS.OF.RESECTION		NUMBER.OF.LYMPH.NODES		GLEASON_SCORE_COMBINED		GLEASON_SCORE_PRIMARY		GLEASON_SCORE_SECONDARY		GLEASON_SCORE		PSA_RESULT_PREOP		PSA_VALUE		RACE	
	nCNV (%)	nWild-Type	Wilcoxon-test_P	Wilcoxon-test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	7 (3%)	264	0.3976	1	0.0091599	1	0.49585	1	1	1	0.69692	1	0.68063	1	0.027213	1	0.02092	1	0.5506	1	0.0043596	1	0.019234	1	0.21533	1	1	1
1q gain	13 (5%)	258	0.76331	1	0.02087	1	0.62241	1	0.21939	1	0.66117	1	0.46448	1	0.0085527	1	0.00060693	0.463	0.99507	1	0.0027939	1	0.052969	1	0.95842	1	1	1
2p gain	4 (1%)	267	0.28299	1	0.40645	1	1	1	1	1	0.59102	1	NA	NA	0.21231	1	0.57456	1	0.55658	1	0.71639	1	0.92262	1	NA	NA	NA	NA
2q gain	3 (1%)	268	0.055359	1	0.63008	1	1	1	1	1	NA	NA	NA	NA	0.10416	1	0.24317	1	0.65247	1	0.52712	1	0.97023	1	NA	NA	NA	NA
3p gain	17 (6%)	254	0.016241	1	0.03792	1	0.68235	1	1	1	0.8693	1	0.87223	1	0.0017691	1	0.0099826	1	0.10681	1	8.7792e-05	0.0694	0.31956	1	0.14505	1	0.52401	1
3q gain	24 (9%)	247	0.01289	1	0.00203	1	0.71981	1	1	1	0.91296	1	0.70568	1	0.0027694	1	0.00097795	0.739	0.44848	1	0.00033491	0.259	0.042725	1	0.22658	1	0.63587	1
4p gain	4 (1%)	267	0.28887	1	0.64968	1	1	1	1	1	0.63239	1	0.48963	1	0.21231	1	0.91527	1	0.14211	1	0.26428	1	0.59541	1	0.15956	1	1	1
4q gain	3 (1%)	268	0.49497	1	1	1	1	1	1	1	1	1	0.55192	1	0.69773	1	0.65094	1	0.49802	1	0.78349	1	0.69243	1	0.31395	1	NA	NA
5p gain	5 (2%)	266	0.20786	1	0.11141	1	0.36517	1	1	1	0.43567	1	0.39483	1	0.003794	1	0.0085334	1	0.48171	1	0.00054934	0.421	0.16813	1	0.47074	1	NA	NA
7p gain	43 (16%)	228	0.14469	1	0.40923	1	0.54894	1	1	1	0.17633	1	0.44949	1	0.088593	1	0.33206	1	0.073289	1	0.10338	1	0.4917	1	0.82697	1	1	1
7q gain	41 (15%)	230	0.26979	1	0.53587	1	1	1	1	1	0.21515	1	0.68545	1	0.13762	1	0.3318	1	0.14329	1	0.15341	1	0.54292	1	0.50985	1	1	1
8p gain	33 (12%)	238	0.20317	1	0.23458	1	0.75268	1	1	1	0.66832	1	0.75679	1	0.00011434	0.0901	0.0057562	1	0.032266	1	0.00046809	0.359	0.16044	1	0.45116	1	0.65903	1
8q gain	53 (20%)	218	0.45401	1	0.12443	1	1	1	1	1	1	1	0.80663	1	8.6282e-05	0.0683	9.6315e-05	0.076	0.23837	1	0.00094442	0.715	0.43869	1	0.29125	1	0.73124	1
9p gain	9 (3%)	262	0.17878	1	0.30518	1	0.041936	1	1	1	1	1	0.015142	1	0.15923	1	0.1507	1	0.90415	1	0.022798	1	0.013879	1	0.94418	1	0.34662	1
9q gain	20 (7%)	251	0.13566	1	0.01462	1	0.0061015	1	0.32044	1	0.69948	1	0.0013925	1	0.0002081	0.162	7.0829e-05	0.0562	0.52104	1	0.00028476	0.221	0.0586	1	0.92913	1	0.45946	1
10p gain	6 (2%)	265	0.37889	1	0.72115	1	1	1	1	1	0.16626	1	0.43784	1	0.44993	1	0.51796	1	0.12692	1	0.089211	1	0.59009	1	0.51541	1	1	1
10q gain	7 (3%)	264	0.31053	1	0.51642	1	0.49585	1	1	1	0.14214	1	0.55481	1	0.56384	1	0.90012	1	0.70577	1	0.15114	1	0.29208	1	0.12319	1	1	1
11p gain	7 (3%)	264	0.95069	1	0.04311	1	0.16435	1	1	1	0.7373	1	0.15165	1	0.075315	1	0.0079241	1	0.5506	1	0.024108	1	0.60864	1	0.84545	1	0.26147	1
11q gain	8 (3%)	263	0.84743	1	0.02938	1	0.20515	1	1	1	1	1	0.22259	1	0.032234	1	0.0043824	1	0.48401	1	0.010757	1	0.49907	1	0.51023	1	0.26269	1
12q gain	3 (1%)	268	0.4762	1	0.28947	1	0.20238	1	1	1	0.22001	1	NA	NA	0.10416	1	0.023161	1	0.57851	1	0.13353	1	0.020078	1	NA	NA	NA	NA
14q gain	4 (1%)	267	0.049408	1	1	1	1	1	1	1	0.32803	1	0.55192	1	0.020332	1	0.013267	1	0.69599	1	0.02928	1	0.95352	1	NA	NA	NA	NA
15q gain	3 (1%)	268	0.73859	1	0.63526	1	1	1	1	1	0.59081	1	0.55192	1	0.69773	1	0.52039	1	0.7427	1	0.13353	1	0.25817	1	NA	NA	NA	NA
16p gain	11 (4%)	260	0.068548	1	0.0076999	1	1	1	1	1	1	1	0.99609	1	0.0035173	1	0.0021777	1	0.16787	1	0.0062257	1	0.78327	1	0.11387	1	1	1
16q gain	5 (2%)	266	0.05433	1	0.42759	1	1	1	1	1	0.65705	1	0.55192	1	0.23383	1	0.069548	1	0.9374	1	0.28391	1	0.49716	1	NA	NA	1	1
17q gain	4 (1%)	267	0.50689	1	0.18703	1	0.057377	1	1	1	0.63328	1	0.010915	1	0.31576	1	0.28733	1	0.93016	1	0.26428	1	0.44286	1	0.63724	1	NA	NA
18p gain	10 (4%)	261	0.221	1	0.03349	1	0.041936	1	1	1	0.62444	1	0.015142	1	0.054825	1	0.28137	1	0.31403	1	0.017108	1	0.49033	1	0.83456	1	1	1
18q gain	4 (1%)	267	0.18331	1	0.18877	1	1	1	1	1	1	1	0.48963	1	0.13589	1	0.28733	1	0.2038	1	0.16721	1	0.38199	1	0.62855	1	NA	NA
19q gain	3 (1%)	268	0.85422	1	0.02811	1	0.28822	1	1	1	0.5893	1	0.23745	1	0.00098552	0.744	0.023161	1	0.0023757	1	0.0014101	1	0.27586	1	0.43137	1	1	1
20p gain	4 (1%)	267	0.19763	1	0.64843	1	1	1	1	1	0.58942	1	0.48963	1	0.010342	1	0.28733	1	0.0046006	1	0.090735	1	0.34113	1	0.59154	1	NA	NA
20q gain	7 (3%)	264	0.16906	1	0.04403	1	1	1	1	1	0.30116	1	0.35525	1	0.11449	1	0.04958	1	0.5506	1	0.09464	1	0.80365	1	1	1	1	1
21q gain	5 (2%)	266	0.15397	1	1	1	1	1	1	1	1	1	0.43784	1	0.031397	1	0.023497	1	0.2548	1	0.042924	1	0.042247	1	0.56475	1	1	1
1p loss	6 (2%)	265	0.9066	1	0.72006	1	1	1	1	1	0.69464	1	0.39363	1	0.33931	1	0.088768	1	0.94274	1	0.40763	1	0.40319	1	0.11626	1	1	1
2p loss	3 (1%)	268	0.3259	1	1	1	1	1	1	1	1	1	0.55192	1	0.50309	1	0.52039	1	0.65247	1	0.56187	1	0.72295	1	0.25312	1	NA	NA
2q loss	4 (1%)	267	0.68425	1	0.65283	1	1	1	1	1	1	1	0.48963	1	0.21231	1	0.28733	1	0.55658	1	0.26428	1	0.47826	1	0.25312	1	NA	NA
4p loss	8 (3%)	263	0.82931	1	0.38374	1	0.0052961	1	0.14012	1	0.03273	1	0.00020649	0.161	2.1654e-05	0.0174	0.00041323	0.319	0.01467	1	5.0149e-05	0.0398	0.80502	1	0.73629	1	1	1
4q loss	6 (2%)	265	0.93836	1	0.71888	1	0.49585	1	0.10666	1	0.22936	1	0.68063	1	0.00068987	0.525	0.0042416	1	0.054303	1	0.0012576	0.947	0.75417	1	0.38878	1	NA	NA
5p loss	4 (1%)	267	0.67709	1	0.01892	1	0.057377	1	1	1	0.32988	1	0.016074	1	0.0070201	1	0.0033736	1	0.2038	1	0.0097491	1	0.33622	1	0.98378	1	1	1
5q loss	8 (3%)	263	0.91876	1	0.02997	1	0.028196	1	1	1	0.26457	1	0.006459	1	4.5662e-06	0.00369	2.9182e-05	0.0233	0.14227	1	5.7648e-06	0.00465	0.20864	1	0.9448	1	1	1
6p loss	9 (3%)	262	0.31696	1	0.082029	1	0.058483	1	1	1	0.54101	1	0.023154	1	0.0043468	1	0.0007505	0.57	0.7382	1	0.0004199	0.323	0.23928	1	0.54835	1	0.30357	1
6q loss	16 (6%)	255	0.77587	1	0.1521	1	0.07544	1	1	1	0.71754	1	0.045391	1	0.00025586	0.199	0.0036631	1	0.044594	1	4.9479e-05	0.0393	0.52786	1	0.22154	1	0.12584	1
8p loss	84 (31%)	187	0.6412	1	0.00145	1	0.16697	1	0.64693	1	0.57406	1	0.11229	1	0.77114	1	0.013579	1	0.03962	1	0.87533	1	0.14285	1	0.21234	1	0.16139	1
8q loss	12 (4%)	259	0.27356	1	0.00033	0.256	0.0043321	1	1	1	0.10378	1	0.00019464	0.152	0.012991	1	0.032184	1	0.15029	1	0.014955	1	0.4264	1	0.017156	1	1	1
9p loss	12 (4%)	259	0.8682	1	0.087049	1	0.12323	1	1	1	0.51334	1	0.11154	1	0.0023104	1	0.032184	1	0.018537	1	0.0028488	1	0.58198	1	0.55931	1	1	1
9q loss	5 (2%)	266	0.20891	1	1	1	1	1	1	1	1	1	0.43784	1	0.031397	1	0.58297	1	0.0066067	1	0.0029077	1	0.33831	1	0.9126	1	1	1
10p loss	17 (6%)	254	0.28107	1	0.00262	1	0.060994	1	1	1	0.45502	1	0.04306	1	0.0011629	0.877	0.00041728	0.321	0.23998	1	0.00042353	0.325	0.64506	1	0.79653	1	1	1
10q loss	21 (8%)	250	0.98243	1	0.066109	1	0.0082726	1	1	1	0.27877	1	0.003445	1	1.2564e-05	0.0101	0.00054984	0.421	0.011627	1	3.1432e-06	0.00254	0.7117	1	0.83935	1	0.58628	1
12p loss	22 (8%)	249	0.76171	1	0.36757	1	0.018146	1	1	1	1	1	0.01147	1	0.027727	1	0.0013537	1	0.77411	1	0.0243	1	0.35438	1	0.29069	1	1	1
12q loss	10 (4%)	261	0.94193	1	0.25995	1	0.07769	1	1	1	1	1	0.061451	1	0.02052	1	0.0095036	1	0.3785	1	0.0082081	1	0.56472	1	0.97297	1	1	1
13q loss	34 (13%)	237	0.098961	1	0.22593	1	0.029926	1	1	1	0.58114	1	0.025246	1	0.00017713	0.139	0.0060533	1	0.028844	1	3.4126e-05	0.0272	0.70764	1	0.49543	1	0.43886	1
14q loss	10 (4%)	261	0.28282	1	0.21721	1	0.2894	1	1	1	0.58916	1	0.33667	1	0.0044142	1	0.0095036	1	0.14885	1	0.0082081	1	0.1602	1	0.36437	1	1	1
15q loss	15 (6%)	256	0.35764	1	0.0083399	1	0.0094151	1	1	1	1	1	0.0015166	1	8.7055e-05	0.0689	2.4638e-05	0.0197	0.29926	1	0.00014836	0.117	0.58354	1	0.26241	1	1	1
16p loss	19 (7%)	252	0.62935	1	1	1	0.69963	1	1	1	0.4997	1	0.9449	1	0.15841	1	0.11684	1	0.73794	1	0.073324	1	0.79013	1	0.57852	1	1	1
16q loss	50 (18%)	221	0.98303	1	0.24484	1	0.11789	1	1	1	0.96526	1	0.13472	1	0.00193	1	0.00078183	0.593	0.3513	1	0.00089648	0.68	0.059857	1	0.61808	1	1	1
17p loss	35 (13%)	236	0.75638	1	0.04533	1	0.059494	1	1	1	0.49556	1	0.034906	1	0.00014015	0.11	0.0003412	0.263	0.26889	1	0.00015339	0.12	0.5082	1	0.056756	1	0.70353	1
17q loss	7 (3%)	264	0.41295	1	0.52053	1	0.5511	1	1	1	0.17331	1	0.80328	1	0.027213	1	0.04958	1	0.20555	1	0.0411	1	0.94897	1	0.80428	1	1	1
18p loss	35 (13%)	236	0.3018	1	0.2151	1	0.12308	1	0.50191	1	0.20332	1	0.10428	1	0.00014992	0.118	0.0066792	1	0.010894	1	2.8106e-05	0.0224	0.76911	1	0.84266	1	0.69836	1
18q loss	49 (18%)	222	0.86707	1	0.22281	1	0.0048438	1	1	1	0.03523	1	0.0020975	1	2.6203e-05	0.0209	0.019975	1	0.00056094	0.429	6.2891e-06	0.00506	0.3716	1	0.72871	1	0.75671	1
19p loss	7 (3%)	264	0.29316	1	0.51816	1	0.5511	1	1	1	0.37623	1	0.80328	1	0.11449	1	0.053941	1	0.81993	1	0.15114	1	0.11459	1	0.37692	1	1	1
19q loss	7 (3%)	264	0.29316	1	0.51783	1	0.5511	1	1	1	0.37784	1	0.80328	1	0.11449	1	0.053941	1	0.81993	1	0.15114	1	0.11459	1	0.37692	1	1	1
20p loss	9 (3%)	262	0.50701	1	0.02256	1	0.5511	1	1	1	1	1	0.72313	1	0.75442	1	0.037386	1	0.057792	1	0.87454	1	0.033606	1	0.99537	1	0.34775	1
20q loss	6 (2%)	265	0.10962	1	0.068439	1	1	1	1	1	0.69543	1	0.43784	1	0.10207	1	0.0042416	1	0.42772	1	0.13821	1	0.2324	1	0.66949	1	1	1
21q loss	9 (3%)	262	0.70481	1	0.083269	1	0.0052961	1	1	1	1	1	0.00023822	0.185	0.0030633	1	0.0070626	1	0.2895	1	0.0058132	1	0.024652	1	0.55195	1	1	1
22q loss	20 (7%)	251	0.97365	1	0.01368	1	0.0082726	1	1	1	0.27662	1	0.0022148	1	5.5848e-06	0.00451	1.0093e-05	0.00811	0.046307	1	2.2383e-05	0.0179	0.46967	1	0.14349	1	0.49641	1
xq loss	13 (5%)	258	0.90499	1	0.42213	1	0.037133	1	0.21939	1	1	1	0.012397	1	0.00021338	0.166	0.00060693	0.463	0.13465	1	0.0003312	0.256	0.36668	1	0.11968	1	0.34767	1
