		Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1q21.3	31 (7%)	388	9.9999e-06	0.00616	0.00188	0.829	0.00218	0.948	0.068749	1	0.00107	0.49	0.0087499	1	0.00286	1	0.14682	1	0.00274	1	0.00129	0.582
amp_3q21.3	60 (14%)	359	9.9999e-06	0.00616	0.00448	1	0.1723	1	0.19987	1	0.00044	0.208	0.00191	0.838	0.066219	1	0.02087	1	0.057599	1	0.01932	1
amp_3q26.2	66 (16%)	353	9.9999e-06	0.00616	0.1562	1	0.1523	1	0.39674	1	0.00301	1	0.088229	1	0.16194	1	0.23325	1	0.32406	1	0.01735	1
amp_4q13.3	15 (4%)	404	9.9999e-06	0.00616	0.21929	1	0.47187	1	0.78097	1	0.053269	1	0.32012	1	0.03461	1	0.47699	1	0.00111	0.504	0.0023	0.991
amp_5q33.3	23 (5%)	396	9.9999e-06	0.00616	0.096309	1	0.075969	1	0.1143	1	0.03391	1	0.59228	1	0.49074	1	0.31196	1	0.097829	1	0.087449	1
amp_7p14.3	86 (21%)	333	9.9999e-06	0.00616	9.9999e-06	0.00616	0.35602	1	0.56231	1	9.9999e-06	0.00616	0.0063599	1	0.02512	1	0.00151	0.676	0.0066899	1	0.02764	1
amp_8p11.23	50 (12%)	369	9.9999e-06	0.00616	6.9999e-05	0.0354	0.096139	1	0.16269	1	3e-05	0.0157	0.0084699	1	0.10773	1	0.056119	1	0.00354	1	0.30807	1
amp_8q24.21	118 (28%)	301	9.9999e-06	0.00616	5.9999e-05	0.0305	0.0056099	1	0.0064599	1	9.9999e-06	0.00616	0.00012	0.0599	4e-05	0.0206	9.9999e-06	0.00616	9.9999e-06	0.00616	0.00184	0.815
amp_9q34.11	47 (11%)	372	9.9999e-06	0.00616	0.03622	1	0.055669	1	0.04368	1	0.04487	1	0.0050699	1	0.068479	1	0.00058999	0.277	0.31341	1	0.0053499	1
amp_11q13.2	35 (8%)	384	9.9999e-06	0.00616	0.054979	1	0.52095	1	0.5225	1	0.00017	0.0833	0.066129	1	0.31102	1	0.085629	1	0.03841	1	0.00136	0.611
amp_12q23.1	26 (6%)	393	0.00016	0.0787	0.0086199	1	0.055909	1	0.11213	1	0.050319	1	0.30157	1	0.086449	1	0.36987	1	0.22768	1	0.27127	1
amp_13q12.11	21 (5%)	398	0.00012	0.0599	0.055469	1	0.0437	1	0.03425	1	0.03366	1	0.091479	1	0.45844	1	0.04554	1	0.01328	1	0.00062999	0.295
amp_14q21.1	21 (5%)	398	9.9999e-06	0.00616	0.0099699	1	0.16733	1	0.17738	1	0.080999	1	0.28287	1	0.85591	1	0.18167	1	0.23176	1	0.44118	1
amp_15q11.2	13 (3%)	406	0.12061	1	0.31434	1	0.78445	1	0.78001	1	0.48173	1	0.4413	1	0.76496	1	0.863	1	0.52963	1	0.55271	1
amp_16q11.2	24 (6%)	395	0.00094999	0.438	0.10641	1	1	1	1	1	0.48243	1	0.068409	1	0.03519	1	3e-04	0.145	6.9999e-05	0.0354	0.01885	1
amp_17q23.2	18 (4%)	401	5e-05	0.0256	0.57772	1	1	1	0.32453	1	0.30354	1	0.17356	1	0.2822	1	0.03316	1	0.33099	1	0.28252	1
amp_18q21.31	10 (2%)	409	0.00021	0.102	0.5684	1	0.84698	1	0.45205	1	0.10548	1	0.4426	1	0.85917	1	0.47855	1	0.47774	1	0.17022	1
amp_19q13.43	14 (3%)	405	9.9999e-06	0.00616	0.10106	1	0.45444	1	0.38731	1	0.0303	1	0.17029	1	0.20053	1	0.00468	1	0.19411	1	0.00186	0.822
amp_20q13.2	34 (8%)	385	9.9999e-06	0.00616	0.00041	0.194	0.30494	1	0.3276	1	0.0032	1	0.0089099	1	0.15693	1	0.01611	1	0.0188	1	0.00016	0.0787
amp_xp22.2	20 (5%)	399	9.9999e-06	0.00616	0.29596	1	NA	NA	NA	NA	0.096019	1	0.20736	1	0.3586	1	0.14003	1	0.02037	1	0.02635	1
amp_xp22.11	17 (4%)	402	3e-05	0.0157	0.87159	1	NA	NA	NA	NA	0.11764	1	0.39996	1	0.50182	1	0.17444	1	0.01179	1	0.12979	1
amp_xp22.11	17 (4%)	402	9.9999e-06	0.00616	0.9326	1	0.094279	1	0.18903	1	0.075149	1	0.34436	1	0.21806	1	0.22099	1	0.13949	1	0.085559	1
amp_xp21.1	17 (4%)	402	3e-05	0.0157	0.23274	1	0.84998	1	0.73389	1	0.13281	1	0.8131	1	0.079759	1	0.57207	1	0.0072599	1	0.01782	1
amp_xq21.1	12 (3%)	407	0.0019	0.836	0.36123	1	0.48642	1	0.64187	1	0.093789	1	0.48873	1	0.04121	1	0.58004	1	0.46288	1	0.077229	1
amp_xq21.1	10 (2%)	409	0.00328	1	0.00159	0.709	0.45117	1	1	1	0.34894	1	0.23712	1	0.89596	1	0.62452	1	0.15098	1	0.36346	1
amp_xq21.31	11 (3%)	408	4e-05	0.0206	0.30749	1	0.84841	1	0.7357	1	0.062119	1	0.30196	1	0.14964	1	0.13374	1	0.32342	1	0.11752	1
amp_xq25	10 (2%)	409	0.00168	0.748	0.03637	1	0.62104	1	0.49158	1	0.10011	1	0.17159	1	0.29657	1	0.02584	1	0.02671	1	0.11864	1
amp_xq25	13 (3%)	406	0.00124	0.56	0.19401	1	1	1	0.8821	1	0.056399	1	0.19234	1	0.47228	1	0.80753	1	0.77574	1	0.071869	1
amp_xq27.1	14 (3%)	405	0.00296	1	0.12125	1	0.4167	1	0.21606	1	0.49922	1	1	1	0.00395	1	0.077099	1	0.00076999	0.358	0.00324	1
del_1p31.3	48 (11%)	371	9.9999e-06	0.00616	9.9999e-06	0.00616	0.33458	1	0.53155	1	5e-05	0.0256	2e-05	0.0105	0.00073999	0.345	0.00257	1	0.0079599	1	0.03425	1
del_1p22.1	48 (11%)	371	9.9999e-06	0.00616	0.01949	1	0.22655	1	0.093289	1	0.02489	1	0.0078099	1	0.00324	1	0.01071	1	0.00251	1	0.04197	1
del_1q42.2	39 (9%)	380	9.9999e-06	0.00616	0.00026	0.126	0.93194	1	0.10621	1	0.91907	1	0.02425	1	0.21041	1	0.29794	1	0.066479	1	0.83195	1
del_2p22.1	34 (8%)	385	0.02999	1	0.057279	1	0.03914	1	0.065299	1	0.01015	1	0.00306	1	0.077609	1	0.2286	1	0.68949	1	0.02394	1
del_2q22.1	72 (17%)	347	9.9999e-06	0.00616	9.9999e-06	0.00616	0.02489	1	0.063349	1	9.9999e-06	0.00616	9.9999e-06	0.00616	0.01521	1	0.0063599	1	0.03661	1	7.9999e-05	0.0402
del_2q22.3	66 (16%)	353	9.9999e-06	0.00616	9.9999e-06	0.00616	0.22375	1	0.071189	1	2e-05	0.0105	9.9999e-06	0.00616	0.1416	1	0.02982	1	0.24125	1	0.064589	1
del_3p13	67 (16%)	352	0.00108	0.492	9.9999e-06	0.00616	0.83985	1	0.9198	1	9.9999e-06	0.00616	9.9999e-06	0.00616	0.10587	1	0.5442	1	0.01788	1	0.01908	1
del_3q29	26 (6%)	393	0.72397	1	0.03773	1	0.72764	1	0.13777	1	0.0073899	1	0.12748	1	0.70521	1	0.62319	1	0.84241	1	0.95497	1
del_4q28.1	34 (8%)	385	2e-05	0.0105	3e-04	0.145	0.088199	1	0.099559	1	0.00083999	0.388	0.03299	1	0.01066	1	0.15722	1	0.01651	1	0.32266	1
del_5q11.2	74 (18%)	345	9.9999e-06	0.00616	9.9999e-06	0.00616	0.00427	1	0.03139	1	0.00157	0.702	0.0025	1	0.0013	0.585	0.00012	0.0599	0.00014	0.0692	0.02374	1
del_5q13.2	76 (18%)	343	9.9999e-06	0.00616	9.9999e-06	0.00616	0.02075	1	0.18271	1	0.00106	0.487	0.057979	1	0.00274	1	0.00050999	0.24	0.00344	1	0.0081299	1
del_5q21.1	82 (20%)	337	9.9999e-06	0.00616	9.9999e-06	0.00616	0.12053	1	0.095169	1	9.9999e-06	0.00616	9.9999e-06	0.00616	0.00199	0.87	0.0142	1	0.01354	1	0.01167	1
del_6q14.3	148 (35%)	271	9.9999e-06	0.00616	9.9999e-06	0.00616	0.0079299	1	0.00224	0.97	9.9999e-06	0.00616	9.9999e-06	0.00616	0.00321	1	0.00077999	0.362	0.00057999	0.273	0.02476	1
del_7q31.33	23 (5%)	396	0.03347	1	0.054119	1	0.0271	1	0.01383	1	0.00315	1	0.01229	1	0.13463	1	0.075869	1	0.067029	1	0.03878	1
del_8p21.3	242 (58%)	177	9.9999e-06	0.00616	9.9999e-06	0.00616	0.03148	1	0.052579	1	9.9999e-06	0.00616	9.9999e-06	0.00616	9.9999e-06	0.00616	3e-05	0.0157	3e-05	0.0157	0.02217	1
del_8p11.21	136 (32%)	283	9.9999e-06	0.00616	9.9999e-06	0.00616	0.86525	1	0.43373	1	9.9999e-06	0.00616	7.9999e-05	0.0402	0.00025	0.121	2e-05	0.0105	0.00069999	0.327	0.00039	0.185
del_9p23	38 (9%)	381	9.9999e-06	0.00616	0.2144	1	0.00328	1	0.02945	1	0.00095999	0.442	0.0229	1	0.095189	1	0.53204	1	0.01746	1	0.22151	1
del_10q23.31	126 (30%)	293	9.9999e-06	0.00616	9.9999e-06	0.00616	0.065919	1	0.14201	1	9.9999e-06	0.00616	9.9999e-06	0.00616	9.9999e-06	0.00616	9.9999e-06	0.00616	0.33854	1	0.00033	0.157
del_11p11.2	28 (7%)	391	0.00034	0.162	0.33913	1	0.00295	1	0.04403	1	0.03799	1	0.01167	1	0.19085	1	0.56617	1	0.0080199	1	0.26519	1
del_11q23.2	43 (10%)	376	0.03858	1	0.074129	1	0.16655	1	0.19209	1	0.91034	1	0.97577	1	0.11987	1	0.66258	1	0.66242	1	0.5917	1
del_12p13.1	100 (24%)	319	9.9999e-06	0.00616	0.00011	0.055	0.059779	1	0.080449	1	0.00335	1	0.00215	0.937	0.00012	0.0599	9.9999e-06	0.00616	0.02167	1	0.052269	1
del_12q24.31	39 (9%)	380	0.00025	0.121	0.088649	1	1	1	0.83003	1	0.0092299	1	0.077419	1	0.53883	1	0.17324	1	0.064289	1	0.77803	1
del_13q14.13	180 (43%)	239	9.9999e-06	0.00616	9.9999e-06	0.00616	0.077269	1	0.22516	1	4e-05	0.0206	0.00021	0.102	0.00034	0.162	0.01532	1	0.0073199	1	0.088569	1
del_13q22.1	139 (33%)	280	9.9999e-06	0.00616	3e-05	0.0157	0.0086399	1	0.04262	1	0.00031	0.149	0.0051199	1	0.0145	1	0.03668	1	0.03257	1	0.04977	1
del_15q21.3	48 (11%)	371	9.9999e-06	0.00616	5.9999e-05	0.0305	0.00195	0.854	0.0063699	1	5.9999e-05	0.0305	0.00081999	0.38	0.01292	1	9.9999e-05	0.0501	9.9999e-06	0.00616	0.0067199	1
del_16q22.3	158 (38%)	261	9.9999e-06	0.00616	9.9999e-06	0.00616	0.42287	1	0.21305	1	3e-05	0.0157	9.9999e-06	0.00616	5e-05	0.0256	9.9999e-06	0.00616	0.00012	0.0599	0.00031	0.149
del_16q24.1	174 (42%)	245	9.9999e-06	0.00616	9.9999e-06	0.00616	0.67983	1	0.49565	1	9.9999e-06	0.00616	5e-05	0.0256	0.0026	1	9.9999e-06	0.00616	0.00032	0.153	0.00222	0.963
del_17p13.1	131 (31%)	288	9.9999e-06	0.00616	9.9999e-06	0.00616	0.03125	1	0.050029	1	9.9999e-06	0.00616	9.9999e-06	0.00616	0.01465	1	6.9999e-05	0.0354	0.00108	0.492	0.00228	0.985
del_17q21.31	85 (20%)	334	9.9999e-06	0.00616	9.9999e-06	0.00616	0.52264	1	0.7506	1	9.9999e-06	0.00616	9.9999e-06	0.00616	0.17016	1	0.051159	1	0.01405	1	0.38271	1
del_18q22.1	115 (27%)	304	9.9999e-06	0.00616	0.108	1	0.30853	1	0.050909	1	0.00173	0.768	0.04216	1	0.50566	1	0.00015	0.0739	0.04617	1	0.054219	1
del_19q13.2	39 (9%)	380	0.00107	0.49	0.15876	1	0.3499	1	0.36093	1	0.061269	1	0.17637	1	0.04824	1	0.00451	1	0.01439	1	0.067029	1
del_21q22.2	40 (10%)	379	0.01803	1	0.0088299	1	0.42309	1	0.76677	1	0.0023	0.991	0.00018	0.088	0.40516	1	0.23225	1	0.063999	1	0.80393	1
del_21q22.3	119 (28%)	300	9.9999e-06	0.00616	9.9999e-06	0.00616	0.11822	1	0.44754	1	9.9999e-06	0.00616	9.9999e-06	0.00616	0.0012	0.544	0.00343	1	0.24859	1	0.00026	0.126
