[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oTPRAD-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/PRAD-TP/10667979/PRAD-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PRAD-TP/10013799/transformed.cor.cli.txt"

nPatients in clinical file=425, in cluster file=419, common to both=419
[1]  62 419
[1] "AMP PEAK  1(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                           31                           388 
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                           31                           388 
[1] "AMP PEAK  2(3Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE 
                           60                           359 
  AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE 
                           60                           359 
[1] "AMP PEAK  3(3Q26.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE 
                           66                           353 
  AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE 
                           66                           353 
[1] "AMP PEAK  4(4Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(4Q13.3) MUTATED AMP PEAK  4(4Q13.3) WILD-TYPE 
                           15                           404 
  AMP PEAK  4(4Q13.3) MUTATED AMP PEAK  4(4Q13.3) WILD-TYPE 
                           15                           404 
[1] "AMP PEAK  5(5Q33.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(5Q33.3) MUTATED AMP PEAK  5(5Q33.3) WILD-TYPE 
                           23                           396 
  AMP PEAK  5(5Q33.3) MUTATED AMP PEAK  5(5Q33.3) WILD-TYPE 
                           23                           396 
[1] "AMP PEAK  6(7P14.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(7P14.3) MUTATED AMP PEAK  6(7P14.3) WILD-TYPE 
                           86                           333 
  AMP PEAK  6(7P14.3) MUTATED AMP PEAK  6(7P14.3) WILD-TYPE 
                           86                           333 
[1] "AMP PEAK  7(8P11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE 
                            50                            369 
  AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE 
                            50                            369 
[1] "AMP PEAK  8(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE 
                           118                            301 
  AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE 
                           118                            301 
[1] "AMP PEAK  9(9Q34.11) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(9Q34.11) MUTATED AMP PEAK  9(9Q34.11) WILD-TYPE 
                            47                            372 
  AMP PEAK  9(9Q34.11) MUTATED AMP PEAK  9(9Q34.11) WILD-TYPE 
                            47                            372 
[1] "AMP PEAK 10(11Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(11Q13.2) MUTATED AMP PEAK 10(11Q13.2) WILD-TYPE 
                            35                            384 
  AMP PEAK 10(11Q13.2) MUTATED AMP PEAK 10(11Q13.2) WILD-TYPE 
                            35                            384 
[1] "AMP PEAK 11(12Q23.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(12Q23.1) MUTATED AMP PEAK 11(12Q23.1) WILD-TYPE 
                            26                            393 
  AMP PEAK 11(12Q23.1) MUTATED AMP PEAK 11(12Q23.1) WILD-TYPE 
                            26                            393 
[1] "AMP PEAK 12(13Q12.11) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(13Q12.11) MUTATED AMP PEAK 12(13Q12.11) WILD-TYPE 
                             21                             398 
  AMP PEAK 12(13Q12.11) MUTATED AMP PEAK 12(13Q12.11) WILD-TYPE 
                             21                             398 
[1] "AMP PEAK 13(14Q21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(14Q21.1) MUTATED AMP PEAK 13(14Q21.1) WILD-TYPE 
                            21                            398 
  AMP PEAK 13(14Q21.1) MUTATED AMP PEAK 13(14Q21.1) WILD-TYPE 
                            21                            398 
[1] "AMP PEAK 14(15Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(15Q11.2) MUTATED AMP PEAK 14(15Q11.2) WILD-TYPE 
                            13                            406 
  AMP PEAK 14(15Q11.2) MUTATED AMP PEAK 14(15Q11.2) WILD-TYPE 
                            13                            406 
[1] "AMP PEAK 15(16Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(16Q11.2) MUTATED AMP PEAK 15(16Q11.2) WILD-TYPE 
                            24                            395 
  AMP PEAK 15(16Q11.2) MUTATED AMP PEAK 15(16Q11.2) WILD-TYPE 
                            24                            395 
[1] "AMP PEAK 16(17Q23.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(17Q23.2) MUTATED AMP PEAK 16(17Q23.2) WILD-TYPE 
                            18                            401 
  AMP PEAK 16(17Q23.2) MUTATED AMP PEAK 16(17Q23.2) WILD-TYPE 
                            18                            401 
[1] "AMP PEAK 17(18Q21.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(18Q21.31) MUTATED AMP PEAK 17(18Q21.31) WILD-TYPE 
                             10                             409 
  AMP PEAK 17(18Q21.31) MUTATED AMP PEAK 17(18Q21.31) WILD-TYPE 
                             10                             409 
[1] "AMP PEAK 18(19Q13.43) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(19Q13.43) MUTATED AMP PEAK 18(19Q13.43) WILD-TYPE 
                             14                             405 
  AMP PEAK 18(19Q13.43) MUTATED AMP PEAK 18(19Q13.43) WILD-TYPE 
                             14                             405 
[1] "AMP PEAK 19(20Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(20Q13.2) MUTATED AMP PEAK 19(20Q13.2) WILD-TYPE 
                            34                            385 
  AMP PEAK 19(20Q13.2) MUTATED AMP PEAK 19(20Q13.2) WILD-TYPE 
                            34                            385 
[1] "AMP PEAK 20(XP22.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(XP22.2) MUTATED AMP PEAK 20(XP22.2) WILD-TYPE 
                           20                           399 
  AMP PEAK 20(XP22.2) MUTATED AMP PEAK 20(XP22.2) WILD-TYPE 
                           20                           399 
[1] "AMP PEAK 21(XP22.11) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(XP22.11) MUTATED AMP PEAK 21(XP22.11) WILD-TYPE 
                            17                            402 
  AMP PEAK 21(XP22.11) MUTATED AMP PEAK 21(XP22.11) WILD-TYPE 
                            17                            402 
[1] "AMP PEAK 22(XP22.11) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(XP22.11) MUTATED AMP PEAK 22(XP22.11) WILD-TYPE 
                            17                            402 
  AMP PEAK 22(XP22.11) MUTATED AMP PEAK 22(XP22.11) WILD-TYPE 
                            17                            402 
[1] "AMP PEAK 23(XP21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(XP21.1) MUTATED AMP PEAK 23(XP21.1) WILD-TYPE 
                           17                           402 
  AMP PEAK 23(XP21.1) MUTATED AMP PEAK 23(XP21.1) WILD-TYPE 
                           17                           402 
[1] "AMP PEAK 24(XQ21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(XQ21.1) MUTATED AMP PEAK 24(XQ21.1) WILD-TYPE 
                           12                           407 
  AMP PEAK 24(XQ21.1) MUTATED AMP PEAK 24(XQ21.1) WILD-TYPE 
                           12                           407 
[1] "AMP PEAK 25(XQ21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE 
                           10                           409 
  AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE 
                           10                           409 
[1] "AMP PEAK 26(XQ21.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(XQ21.31) MUTATED AMP PEAK 26(XQ21.31) WILD-TYPE 
                            11                            408 
  AMP PEAK 26(XQ21.31) MUTATED AMP PEAK 26(XQ21.31) WILD-TYPE 
                            11                            408 
[1] "AMP PEAK 27(XQ25) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(XQ25) MUTATED AMP PEAK 27(XQ25) WILD-TYPE 
                         10                         409 
  AMP PEAK 27(XQ25) MUTATED AMP PEAK 27(XQ25) WILD-TYPE 
                         10                         409 
[1] "AMP PEAK 28(XQ25) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 28(XQ25) MUTATED AMP PEAK 28(XQ25) WILD-TYPE 
                         13                         406 
  AMP PEAK 28(XQ25) MUTATED AMP PEAK 28(XQ25) WILD-TYPE 
                         13                         406 
[1] "AMP PEAK 29(XQ27.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 29(XQ27.1) MUTATED AMP PEAK 29(XQ27.1) WILD-TYPE 
                           14                           405 
  AMP PEAK 29(XQ27.1) MUTATED AMP PEAK 29(XQ27.1) WILD-TYPE 
                           14                           405 
[1] "DEL PEAK  1(1P31.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE 
                           48                           371 
  DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE 
                           48                           371 
[1] "DEL PEAK  2(1P22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                           48                           371 
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                           48                           371 
[1] "DEL PEAK  3(1Q42.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1Q42.2) MUTATED DEL PEAK  3(1Q42.2) WILD-TYPE 
                           39                           380 
  DEL PEAK  3(1Q42.2) MUTATED DEL PEAK  3(1Q42.2) WILD-TYPE 
                           39                           380 
[1] "DEL PEAK  4(2P22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2P22.1) MUTATED DEL PEAK  4(2P22.1) WILD-TYPE 
                           34                           385 
  DEL PEAK  4(2P22.1) MUTATED DEL PEAK  4(2P22.1) WILD-TYPE 
                           34                           385 
[1] "DEL PEAK  5(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE 
                           72                           347 
  DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE 
                           72                           347 
[1] "DEL PEAK  6(2Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(2Q22.3) MUTATED DEL PEAK  6(2Q22.3) WILD-TYPE 
                           66                           353 
  DEL PEAK  6(2Q22.3) MUTATED DEL PEAK  6(2Q22.3) WILD-TYPE 
                           66                           353 
[1] "DEL PEAK  7(3P13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE 
                         67                         352 
  DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE 
                         67                         352 
[1] "DEL PEAK  8(3Q29) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE 
                         26                         393 
  DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE 
                         26                         393 
[1] "DEL PEAK  9(4Q28.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(4Q28.1) MUTATED DEL PEAK  9(4Q28.1) WILD-TYPE 
                           34                           385 
  DEL PEAK  9(4Q28.1) MUTATED DEL PEAK  9(4Q28.1) WILD-TYPE 
                           34                           385 
[1] "DEL PEAK 10(5Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE 
                           74                           345 
  DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE 
                           74                           345 
[1] "DEL PEAK 11(5Q13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE 
                           76                           343 
  DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE 
                           76                           343 
[1] "DEL PEAK 12(5Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(5Q21.1) MUTATED DEL PEAK 12(5Q21.1) WILD-TYPE 
                           82                           337 
  DEL PEAK 12(5Q21.1) MUTATED DEL PEAK 12(5Q21.1) WILD-TYPE 
                           82                           337 
[1] "DEL PEAK 13(6Q14.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(6Q14.3) MUTATED DEL PEAK 13(6Q14.3) WILD-TYPE 
                          148                           271 
  DEL PEAK 13(6Q14.3) MUTATED DEL PEAK 13(6Q14.3) WILD-TYPE 
                          148                           271 
[1] "DEL PEAK 14(7Q31.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(7Q31.33) MUTATED DEL PEAK 14(7Q31.33) WILD-TYPE 
                            23                            396 
  DEL PEAK 14(7Q31.33) MUTATED DEL PEAK 14(7Q31.33) WILD-TYPE 
                            23                            396 
[1] "DEL PEAK 15(8P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(8P21.3) MUTATED DEL PEAK 15(8P21.3) WILD-TYPE 
                          242                           177 
  DEL PEAK 15(8P21.3) MUTATED DEL PEAK 15(8P21.3) WILD-TYPE 
                          242                           177 
[1] "DEL PEAK 16(8P11.21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE 
                           136                            283 
  DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE 
                           136                            283 
[1] "DEL PEAK 17(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE 
                         38                         381 
  DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE 
                         38                         381 
[1] "DEL PEAK 18(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE 
                            126                             293 
  DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE 
                            126                             293 
[1] "DEL PEAK 19(11P11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(11P11.2) MUTATED DEL PEAK 19(11P11.2) WILD-TYPE 
                            28                            391 
  DEL PEAK 19(11P11.2) MUTATED DEL PEAK 19(11P11.2) WILD-TYPE 
                            28                            391 
[1] "DEL PEAK 20(11Q23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(11Q23.2) MUTATED DEL PEAK 20(11Q23.2) WILD-TYPE 
                            43                            376 
  DEL PEAK 20(11Q23.2) MUTATED DEL PEAK 20(11Q23.2) WILD-TYPE 
                            43                            376 
[1] "DEL PEAK 21(12P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE 
                           100                            319 
  DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE 
                           100                            319 
[1] "DEL PEAK 22(12Q24.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(12Q24.31) MUTATED DEL PEAK 22(12Q24.31) WILD-TYPE 
                             39                             380 
  DEL PEAK 22(12Q24.31) MUTATED DEL PEAK 22(12Q24.31) WILD-TYPE 
                             39                             380 
[1] "DEL PEAK 23(13Q14.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(13Q14.13) MUTATED DEL PEAK 23(13Q14.13) WILD-TYPE 
                            180                             239 
  DEL PEAK 23(13Q14.13) MUTATED DEL PEAK 23(13Q14.13) WILD-TYPE 
                            180                             239 
[1] "DEL PEAK 24(13Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(13Q22.1) MUTATED DEL PEAK 24(13Q22.1) WILD-TYPE 
                           139                            280 
  DEL PEAK 24(13Q22.1) MUTATED DEL PEAK 24(13Q22.1) WILD-TYPE 
                           139                            280 
[1] "DEL PEAK 25(15Q21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(15Q21.3) MUTATED DEL PEAK 25(15Q21.3) WILD-TYPE 
                            48                            371 
  DEL PEAK 25(15Q21.3) MUTATED DEL PEAK 25(15Q21.3) WILD-TYPE 
                            48                            371 
[1] "DEL PEAK 26(16Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(16Q22.3) MUTATED DEL PEAK 26(16Q22.3) WILD-TYPE 
                           158                            261 
  DEL PEAK 26(16Q22.3) MUTATED DEL PEAK 26(16Q22.3) WILD-TYPE 
                           158                            261 
[1] "DEL PEAK 27(16Q24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(16Q24.1) MUTATED DEL PEAK 27(16Q24.1) WILD-TYPE 
                           174                            245 
  DEL PEAK 27(16Q24.1) MUTATED DEL PEAK 27(16Q24.1) WILD-TYPE 
                           174                            245 
[1] "DEL PEAK 28(17P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(17P13.1) MUTATED DEL PEAK 28(17P13.1) WILD-TYPE 
                           131                            288 
  DEL PEAK 28(17P13.1) MUTATED DEL PEAK 28(17P13.1) WILD-TYPE 
                           131                            288 
[1] "DEL PEAK 29(17Q21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(17Q21.31) MUTATED DEL PEAK 29(17Q21.31) WILD-TYPE 
                             85                             334 
  DEL PEAK 29(17Q21.31) MUTATED DEL PEAK 29(17Q21.31) WILD-TYPE 
                             85                             334 
[1] "DEL PEAK 30(18Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE 
                           115                            304 
  DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE 
                           115                            304 
[1] "DEL PEAK 31(19Q13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(19Q13.2) MUTATED DEL PEAK 31(19Q13.2) WILD-TYPE 
                            39                            380 
  DEL PEAK 31(19Q13.2) MUTATED DEL PEAK 31(19Q13.2) WILD-TYPE 
                            39                            380 
[1] "DEL PEAK 32(21Q22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(21Q22.2) MUTATED DEL PEAK 32(21Q22.2) WILD-TYPE 
                            40                            379 
  DEL PEAK 32(21Q22.2) MUTATED DEL PEAK 32(21Q22.2) WILD-TYPE 
                            40                            379 
[1] "DEL PEAK 33(21Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(21Q22.3) MUTATED DEL PEAK 33(21Q22.3) WILD-TYPE 
                           119                            300 
  DEL PEAK 33(21Q22.3) MUTATED DEL PEAK 33(21Q22.3) WILD-TYPE 
                           119                            300 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 419 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 419 columns, 0 survival variables, and 10 non-survival variables.
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.3) MUTATED        7     23      1
  AMP PEAK  1(1Q21.3) WILD-TYPE    228     93     67
D1V1, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                           7                           228
  CLUS_2                          23                            93
  CLUS_3                           1                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.3) MUTATED       10      1     14
  AMP PEAK  1(1Q21.3) WILD-TYPE     86    105    115
D1V2, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                          10                            86
  CLUS_2                           1                           105
  CLUS_3                          14                           115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.3) MUTATED        0      4     12
  AMP PEAK  1(1Q21.3) WILD-TYPE     41     55     50
D1V3, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                           0                            41
  CLUS_2                           4                            55
  CLUS_3                          12                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.3) MUTATED        2     11      3
  AMP PEAK  1(1Q21.3) WILD-TYPE     45     54     47
D1V4, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                           2                            45
  CLUS_2                          11                            54
  CLUS_3                           3                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.3) MUTATED       11      1     16
  AMP PEAK  1(1Q21.3) WILD-TYPE    113    111    118
D1V5, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                          11                           113
  CLUS_2                           1                           111
  CLUS_3                          16                           118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.3) MUTATED        9      2     17
  AMP PEAK  1(1Q21.3) WILD-TYPE    129     95    118
D1V6, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                           9                           129
  CLUS_2                           2                            95
  CLUS_3                          17                           118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1Q21.3) MUTATED        1      0     13     10      7
  AMP PEAK  1(1Q21.3) WILD-TYPE     87     40    110     63     84
D1V7, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                           1                            87
  CLUS_2                           0                            40
  CLUS_3                          13                           110
  CLUS_4                          10                            63
  CLUS_5                           7                            84
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.3) MUTATED        8      3     20
  AMP PEAK  1(1Q21.3) WILD-TYPE    141     67    176
D1V8, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                           8                           141
  CLUS_2                           3                            67
  CLUS_3                          20                           176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1Q21.3) MUTATED       19      8      4
  AMP PEAK  1(1Q21.3) WILD-TYPE    127    110    147
D1V9, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                          19                           127
  CLUS_2                           8                           110
  CLUS_3                           4                           147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1Q21.3) MUTATED        1      1     19      4      6
  AMP PEAK  1(1Q21.3) WILD-TYPE     94     36    106     57     91
D1V10, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                           1                            94
  CLUS_2                           1                            36
  CLUS_3                          19                           106
  CLUS_4                           4                            57
  CLUS_5                           6                            91
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(3Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(3Q21.3) MUTATED       10     41      9
  AMP PEAK  2(3Q21.3) WILD-TYPE    225     75     59
D2V1, multiclass
        clus
vv       AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE
  CLUS_1                          10                           225
  CLUS_2                          41                            75
  CLUS_3                           9                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(3Q21.3) MUTATED       20      6     14
  AMP PEAK  2(3Q21.3) WILD-TYPE     76    100    115
D2V2, multiclass
        clus
vv       AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE
  CLUS_1                          20                            76
  CLUS_2                           6                           100
  CLUS_3                          14                           115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(3Q21.3) MUTATED        4      6     13
  AMP PEAK  2(3Q21.3) WILD-TYPE     37     53     49
D2V3, multiclass
        clus
vv       AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE
  CLUS_1                           4                            37
  CLUS_2                           6                            53
  CLUS_3                          13                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(3Q21.3) MUTATED        6     13      4
  AMP PEAK  2(3Q21.3) WILD-TYPE     41     52     46
D2V4, multiclass
        clus
vv       AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE
  CLUS_1                           6                            41
  CLUS_2                          13                            52
  CLUS_3                           4                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(3Q21.3) MUTATED       28      6     17
  AMP PEAK  2(3Q21.3) WILD-TYPE     96    106    117
D2V5, multiclass
        clus
vv       AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE
  CLUS_1                          28                            96
  CLUS_2                           6                           106
  CLUS_3                          17                           117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(3Q21.3) MUTATED       26      4     21
  AMP PEAK  2(3Q21.3) WILD-TYPE    112     93    114
D2V6, multiclass
        clus
vv       AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE
  CLUS_1                          26                           112
  CLUS_2                           4                            93
  CLUS_3                          21                           114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(3Q21.3) MUTATED        8      2     25     12     12
  AMP PEAK  2(3Q21.3) WILD-TYPE     80     38     98     61     79
D2V7, multiclass
        clus
vv       AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE
  CLUS_1                           8                            80
  CLUS_2                           2                            38
  CLUS_3                          25                            98
  CLUS_4                          12                            61
  CLUS_5                          12                            79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(3Q21.3) MUTATED       14      7     38
  AMP PEAK  2(3Q21.3) WILD-TYPE    135     63    158
D2V8, multiclass
        clus
vv       AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE
  CLUS_1                          14                           135
  CLUS_2                           7                            63
  CLUS_3                          38                           158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(3Q21.3) MUTATED       29     14     16
  AMP PEAK  2(3Q21.3) WILD-TYPE    117    104    135
D2V9, multiclass
        clus
vv       AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE
  CLUS_1                          29                           117
  CLUS_2                          14                           104
  CLUS_3                          16                           135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(3Q21.3) MUTATED        9      7     28      5     10
  AMP PEAK  2(3Q21.3) WILD-TYPE     86     30     97     56     87
D2V10, multiclass
        clus
vv       AMP PEAK  2(3Q21.3) MUTATED AMP PEAK  2(3Q21.3) WILD-TYPE
  CLUS_1                           9                            86
  CLUS_2                           7                            30
  CLUS_3                          28                            97
  CLUS_4                           5                            56
  CLUS_5                          10                            87
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(3Q26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.2) MUTATED       15     39     12
  AMP PEAK  3(3Q26.2) WILD-TYPE    220     77     56
D3V1, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          15                           220
  CLUS_2                          39                            77
  CLUS_3                          12                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.2) MUTATED       19     11     17
  AMP PEAK  3(3Q26.2) WILD-TYPE     77     95    112
D3V2, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          19                            77
  CLUS_2                          11                            95
  CLUS_3                          17                           112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.2) MUTATED        8      7     16
  AMP PEAK  3(3Q26.2) WILD-TYPE     33     52     46
D3V3, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                           8                            33
  CLUS_2                           7                            52
  CLUS_3                          16                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.2) MUTATED        7     16      8
  AMP PEAK  3(3Q26.2) WILD-TYPE     40     49     42
D3V4, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                           7                            40
  CLUS_2                          16                            49
  CLUS_3                           8                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.2) MUTATED       28      8     19
  AMP PEAK  3(3Q26.2) WILD-TYPE     96    104    115
D3V5, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          28                            96
  CLUS_2                           8                           104
  CLUS_3                          19                           115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.2) MUTATED       23      8     24
  AMP PEAK  3(3Q26.2) WILD-TYPE    115     89    111
D3V6, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          23                           115
  CLUS_2                           8                            89
  CLUS_3                          24                           111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(3Q26.2) MUTATED        9      4     25     15     12
  AMP PEAK  3(3Q26.2) WILD-TYPE     79     36     98     58     79
D3V7, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                           9                            79
  CLUS_2                           4                            36
  CLUS_3                          25                            98
  CLUS_4                          15                            58
  CLUS_5                          12                            79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.2) MUTATED       20      8     37
  AMP PEAK  3(3Q26.2) WILD-TYPE    129     62    159
D3V8, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          20                           129
  CLUS_2                           8                            62
  CLUS_3                          37                           159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3Q26.2) MUTATED       28     15     22
  AMP PEAK  3(3Q26.2) WILD-TYPE    118    103    129
D3V9, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          28                           118
  CLUS_2                          15                           103
  CLUS_3                          22                           129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(3Q26.2) MUTATED        8      7     29     11     10
  AMP PEAK  3(3Q26.2) WILD-TYPE     87     30     96     50     87
D3V10, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                           8                            87
  CLUS_2                           7                            30
  CLUS_3                          29                            96
  CLUS_4                          11                            50
  CLUS_5                          10                            87
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(4Q13.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q13.3) MUTATED        2     13      0
  AMP PEAK  4(4Q13.3) WILD-TYPE    233    103     68
D4V1, multiclass
        clus
vv       AMP PEAK  4(4Q13.3) MUTATED AMP PEAK  4(4Q13.3) WILD-TYPE
  CLUS_1                           2                           233
  CLUS_2                          13                           103
  CLUS_3                           0                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q13.3) MUTATED        2      0      4
  AMP PEAK  4(4Q13.3) WILD-TYPE     94    106    125
D4V2, multiclass
        clus
vv       AMP PEAK  4(4Q13.3) MUTATED AMP PEAK  4(4Q13.3) WILD-TYPE
  CLUS_1                           2                            94
  CLUS_2                           0                           106
  CLUS_3                           4                           125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q13.3) MUTATED        1      0      2
  AMP PEAK  4(4Q13.3) WILD-TYPE     40     59     60
D4V3, multiclass
        clus
vv       AMP PEAK  4(4Q13.3) MUTATED AMP PEAK  4(4Q13.3) WILD-TYPE
  CLUS_1                           1                            40
  CLUS_2                           0                            59
  CLUS_3                           2                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q13.3) MUTATED        0      2      1
  AMP PEAK  4(4Q13.3) WILD-TYPE     47     63     49
D4V4, multiclass
        clus
vv       AMP PEAK  4(4Q13.3) MUTATED AMP PEAK  4(4Q13.3) WILD-TYPE
  CLUS_1                           0                            47
  CLUS_2                           2                            63
  CLUS_3                           1                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q13.3) MUTATED        5      0      6
  AMP PEAK  4(4Q13.3) WILD-TYPE    119    112    128
D4V5, multiclass
        clus
vv       AMP PEAK  4(4Q13.3) MUTATED AMP PEAK  4(4Q13.3) WILD-TYPE
  CLUS_1                           5                           119
  CLUS_2                           0                           112
  CLUS_3                           6                           128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q13.3) MUTATED        4      1      6
  AMP PEAK  4(4Q13.3) WILD-TYPE    134     96    129
D4V6, multiclass
        clus
vv       AMP PEAK  4(4Q13.3) MUTATED AMP PEAK  4(4Q13.3) WILD-TYPE
  CLUS_1                           4                           134
  CLUS_2                           1                            96
  CLUS_3                           6                           129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(4Q13.3) MUTATED        2      0      7      5      0
  AMP PEAK  4(4Q13.3) WILD-TYPE     86     40    116     68     91
D4V7, multiclass
        clus
vv       AMP PEAK  4(4Q13.3) MUTATED AMP PEAK  4(4Q13.3) WILD-TYPE
  CLUS_1                           2                            86
  CLUS_2                           0                            40
  CLUS_3                           7                           116
  CLUS_4                           5                            68
  CLUS_5                           0                            91
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q13.3) MUTATED        4      1      9
  AMP PEAK  4(4Q13.3) WILD-TYPE    145     69    187
D4V8, multiclass
        clus
vv       AMP PEAK  4(4Q13.3) MUTATED AMP PEAK  4(4Q13.3) WILD-TYPE
  CLUS_1                           4                           145
  CLUS_2                           1                            69
  CLUS_3                           9                           187
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(4Q13.3) MUTATED       11      0      3
  AMP PEAK  4(4Q13.3) WILD-TYPE    135    118    148
D4V9, multiclass
        clus
vv       AMP PEAK  4(4Q13.3) MUTATED AMP PEAK  4(4Q13.3) WILD-TYPE
  CLUS_1                          11                           135
  CLUS_2                           0                           118
  CLUS_3                           3                           148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(4Q13.3) MUTATED        1      1     11      1      0
  AMP PEAK  4(4Q13.3) WILD-TYPE     94     36    114     60     97
D4V10, multiclass
        clus
vv       AMP PEAK  4(4Q13.3) MUTATED AMP PEAK  4(4Q13.3) WILD-TYPE
  CLUS_1                           1                            94
  CLUS_2                           1                            36
  CLUS_3                          11                           114
  CLUS_4                           1                            60
  CLUS_5                           0                            97
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(5Q33.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5Q33.3) MUTATED        2     21      0
  AMP PEAK  5(5Q33.3) WILD-TYPE    233     95     68
D5V1, multiclass
        clus
vv       AMP PEAK  5(5Q33.3) MUTATED AMP PEAK  5(5Q33.3) WILD-TYPE
  CLUS_1                           2                           233
  CLUS_2                          21                            95
  CLUS_3                           0                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5Q33.3) MUTATED        5      1      8
  AMP PEAK  5(5Q33.3) WILD-TYPE     91    105    121
D5V2, multiclass
        clus
vv       AMP PEAK  5(5Q33.3) MUTATED AMP PEAK  5(5Q33.3) WILD-TYPE
  CLUS_1                           5                            91
  CLUS_2                           1                           105
  CLUS_3                           8                           121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5Q33.3) MUTATED        2      0      5
  AMP PEAK  5(5Q33.3) WILD-TYPE     39     59     57
D5V3, multiclass
        clus
vv       AMP PEAK  5(5Q33.3) MUTATED AMP PEAK  5(5Q33.3) WILD-TYPE
  CLUS_1                           2                            39
  CLUS_2                           0                            59
  CLUS_3                           5                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5Q33.3) MUTATED        2      5      0
  AMP PEAK  5(5Q33.3) WILD-TYPE     45     60     50
D5V4, multiclass
        clus
vv       AMP PEAK  5(5Q33.3) MUTATED AMP PEAK  5(5Q33.3) WILD-TYPE
  CLUS_1                           2                            45
  CLUS_2                           5                            60
  CLUS_3                           0                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5Q33.3) MUTATED        9      1      8
  AMP PEAK  5(5Q33.3) WILD-TYPE    115    111    126
D5V5, multiclass
        clus
vv       AMP PEAK  5(5Q33.3) MUTATED AMP PEAK  5(5Q33.3) WILD-TYPE
  CLUS_1                           9                           115
  CLUS_2                           1                           111
  CLUS_3                           8                           126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5Q33.3) MUTATED        7      3      8
  AMP PEAK  5(5Q33.3) WILD-TYPE    131     94    127
D5V6, multiclass
        clus
vv       AMP PEAK  5(5Q33.3) MUTATED AMP PEAK  5(5Q33.3) WILD-TYPE
  CLUS_1                           7                           131
  CLUS_2                           3                            94
  CLUS_3                           8                           127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(5Q33.3) MUTATED        3      2     11      3      4
  AMP PEAK  5(5Q33.3) WILD-TYPE     85     38    112     70     87
D5V7, multiclass
        clus
vv       AMP PEAK  5(5Q33.3) MUTATED AMP PEAK  5(5Q33.3) WILD-TYPE
  CLUS_1                           3                            85
  CLUS_2                           2                            38
  CLUS_3                          11                           112
  CLUS_4                           3                            70
  CLUS_5                           4                            87
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5Q33.3) MUTATED        5      4     14
  AMP PEAK  5(5Q33.3) WILD-TYPE    144     66    182
D5V8, multiclass
        clus
vv       AMP PEAK  5(5Q33.3) MUTATED AMP PEAK  5(5Q33.3) WILD-TYPE
  CLUS_1                           5                           144
  CLUS_2                           4                            66
  CLUS_3                          14                           182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(5Q33.3) MUTATED       13      5      5
  AMP PEAK  5(5Q33.3) WILD-TYPE    133    113    146
D5V9, multiclass
        clus
vv       AMP PEAK  5(5Q33.3) MUTATED AMP PEAK  5(5Q33.3) WILD-TYPE
  CLUS_1                          13                           133
  CLUS_2                           5                           113
  CLUS_3                           5                           146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(5Q33.3) MUTATED        4      2     13      2      2
  AMP PEAK  5(5Q33.3) WILD-TYPE     91     35    112     59     95
D5V10, multiclass
        clus
vv       AMP PEAK  5(5Q33.3) MUTATED AMP PEAK  5(5Q33.3) WILD-TYPE
  CLUS_1                           4                            91
  CLUS_2                           2                            35
  CLUS_3                          13                           112
  CLUS_4                           2                            59
  CLUS_5                           2                            95
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(7P14.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P14.3) MUTATED       14     53     19
  AMP PEAK  6(7P14.3) WILD-TYPE    221     63     49
D6V1, multiclass
        clus
vv       AMP PEAK  6(7P14.3) MUTATED AMP PEAK  6(7P14.3) WILD-TYPE
  CLUS_1                          14                           221
  CLUS_2                          53                            63
  CLUS_3                          19                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P14.3) MUTATED       36      6     20
  AMP PEAK  6(7P14.3) WILD-TYPE     60    100    109
D6V2, multiclass
        clus
vv       AMP PEAK  6(7P14.3) MUTATED AMP PEAK  6(7P14.3) WILD-TYPE
  CLUS_1                          36                            60
  CLUS_2                           6                           100
  CLUS_3                          20                           109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P14.3) MUTATED        8     10     17
  AMP PEAK  6(7P14.3) WILD-TYPE     33     49     45
D6V3, multiclass
        clus
vv       AMP PEAK  6(7P14.3) MUTATED AMP PEAK  6(7P14.3) WILD-TYPE
  CLUS_1                           8                            33
  CLUS_2                          10                            49
  CLUS_3                          17                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P14.3) MUTATED        9     17      9
  AMP PEAK  6(7P14.3) WILD-TYPE     38     48     41
D6V4, multiclass
        clus
vv       AMP PEAK  6(7P14.3) MUTATED AMP PEAK  6(7P14.3) WILD-TYPE
  CLUS_1                           9                            38
  CLUS_2                          17                            48
  CLUS_3                           9                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P14.3) MUTATED       44      7     21
  AMP PEAK  6(7P14.3) WILD-TYPE     80    105    113
D6V5, multiclass
        clus
vv       AMP PEAK  6(7P14.3) MUTATED AMP PEAK  6(7P14.3) WILD-TYPE
  CLUS_1                          44                            80
  CLUS_2                           7                           105
  CLUS_3                          21                           113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P14.3) MUTATED       37     10     25
  AMP PEAK  6(7P14.3) WILD-TYPE    101     87    110
D6V6, multiclass
        clus
vv       AMP PEAK  6(7P14.3) MUTATED AMP PEAK  6(7P14.3) WILD-TYPE
  CLUS_1                          37                           101
  CLUS_2                          10                            87
  CLUS_3                          25                           110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(7P14.3) MUTATED        8     10     31     14     22
  AMP PEAK  6(7P14.3) WILD-TYPE     80     30     92     59     69
D6V7, multiclass
        clus
vv       AMP PEAK  6(7P14.3) MUTATED AMP PEAK  6(7P14.3) WILD-TYPE
  CLUS_1                           8                            80
  CLUS_2                          10                            30
  CLUS_3                          31                            92
  CLUS_4                          14                            59
  CLUS_5                          22                            69
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P14.3) MUTATED       17     20     48
  AMP PEAK  6(7P14.3) WILD-TYPE    132     50    148
D6V8, multiclass
        clus
vv       AMP PEAK  6(7P14.3) MUTATED AMP PEAK  6(7P14.3) WILD-TYPE
  CLUS_1                          17                           132
  CLUS_2                          20                            50
  CLUS_3                          48                           148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(7P14.3) MUTATED       39     27     19
  AMP PEAK  6(7P14.3) WILD-TYPE    107     91    132
D6V9, multiclass
        clus
vv       AMP PEAK  6(7P14.3) MUTATED AMP PEAK  6(7P14.3) WILD-TYPE
  CLUS_1                          39                           107
  CLUS_2                          27                            91
  CLUS_3                          19                           132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(7P14.3) MUTATED       12     10     36     10     17
  AMP PEAK  6(7P14.3) WILD-TYPE     83     27     89     51     80
D6V10, multiclass
        clus
vv       AMP PEAK  6(7P14.3) MUTATED AMP PEAK  6(7P14.3) WILD-TYPE
  CLUS_1                          12                            83
  CLUS_2                          10                            27
  CLUS_3                          36                            89
  CLUS_4                          10                            51
  CLUS_5                          17                            80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(8P11.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8P11.23) MUTATED        6     32     12
  AMP PEAK  7(8P11.23) WILD-TYPE    229     84     56
D7V1, multiclass
        clus
vv       AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE
  CLUS_1                            6                            229
  CLUS_2                           32                             84
  CLUS_3                           12                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8P11.23) MUTATED       20      3      9
  AMP PEAK  7(8P11.23) WILD-TYPE     76    103    120
D7V2, multiclass
        clus
vv       AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE
  CLUS_1                           20                             76
  CLUS_2                            3                            103
  CLUS_3                            9                            120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8P11.23) MUTATED        2      6     12
  AMP PEAK  7(8P11.23) WILD-TYPE     39     53     50
D7V3, multiclass
        clus
vv       AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE
  CLUS_1                            2                             39
  CLUS_2                            6                             53
  CLUS_3                           12                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8P11.23) MUTATED        3     12      5
  AMP PEAK  7(8P11.23) WILD-TYPE     44     53     45
D7V4, multiclass
        clus
vv       AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE
  CLUS_1                            3                             44
  CLUS_2                           12                             53
  CLUS_3                            5                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8P11.23) MUTATED       27      5     10
  AMP PEAK  7(8P11.23) WILD-TYPE     97    107    124
D7V5, multiclass
        clus
vv       AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE
  CLUS_1                           27                             97
  CLUS_2                            5                            107
  CLUS_3                           10                            124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8P11.23) MUTATED       23      4     15
  AMP PEAK  7(8P11.23) WILD-TYPE    115     93    120
D7V6, multiclass
        clus
vv       AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE
  CLUS_1                           23                            115
  CLUS_2                            4                             93
  CLUS_3                           15                            120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(8P11.23) MUTATED        4      5     20      9     11
  AMP PEAK  7(8P11.23) WILD-TYPE     84     35    103     64     80
D7V7, multiclass
        clus
vv       AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE
  CLUS_1                            4                             84
  CLUS_2                            5                             35
  CLUS_3                           20                            103
  CLUS_4                            9                             64
  CLUS_5                           11                             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8P11.23) MUTATED       13      5     31
  AMP PEAK  7(8P11.23) WILD-TYPE    136     65    165
D7V8, multiclass
        clus
vv       AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE
  CLUS_1                           13                            136
  CLUS_2                            5                             65
  CLUS_3                           31                            165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(8P11.23) MUTATED       27     13      9
  AMP PEAK  7(8P11.23) WILD-TYPE    119    105    142
D7V9, multiclass
        clus
vv       AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE
  CLUS_1                           27                            119
  CLUS_2                           13                            105
  CLUS_3                            9                            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(8P11.23) MUTATED       10      3     21      4     11
  AMP PEAK  7(8P11.23) WILD-TYPE     85     34    104     57     86
D7V10, multiclass
        clus
vv       AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE
  CLUS_1                           10                             85
  CLUS_2                            3                             34
  CLUS_3                           21                            104
  CLUS_4                            4                             57
  CLUS_5                           11                             86
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q24.21) MUTATED       34     71     13
  AMP PEAK  8(8Q24.21) WILD-TYPE    201     45     55
D8V1, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                           34                            201
  CLUS_2                           71                             45
  CLUS_3                           13                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q24.21) MUTATED       39     13     32
  AMP PEAK  8(8Q24.21) WILD-TYPE     57     93     97
D8V2, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                           39                             57
  CLUS_2                           13                             93
  CLUS_3                           32                             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q24.21) MUTATED        9     11     27
  AMP PEAK  8(8Q24.21) WILD-TYPE     32     48     35
D8V3, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                            9                             32
  CLUS_2                           11                             48
  CLUS_3                           27                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q24.21) MUTATED        9     28     10
  AMP PEAK  8(8Q24.21) WILD-TYPE     38     37     40
D8V4, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                            9                             38
  CLUS_2                           28                             37
  CLUS_3                           10                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q24.21) MUTATED       53     13     35
  AMP PEAK  8(8Q24.21) WILD-TYPE     71     99     99
D8V5, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                           53                             71
  CLUS_2                           13                             99
  CLUS_3                           35                             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q24.21) MUTATED       47     11     43
  AMP PEAK  8(8Q24.21) WILD-TYPE     91     86     92
D8V6, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                           47                             91
  CLUS_2                           11                             86
  CLUS_3                           43                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(8Q24.21) MUTATED        9      9     52     22     24
  AMP PEAK  8(8Q24.21) WILD-TYPE     79     31     71     51     67
D8V7, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                            9                             79
  CLUS_2                            9                             31
  CLUS_3                           52                             71
  CLUS_4                           22                             51
  CLUS_5                           24                             67
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q24.21) MUTATED       23     13     80
  AMP PEAK  8(8Q24.21) WILD-TYPE    126     57    116
D8V8, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                           23                            126
  CLUS_2                           13                             57
  CLUS_3                           80                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q24.21) MUTATED       62     33     21
  AMP PEAK  8(8Q24.21) WILD-TYPE     84     85    130
D8V9, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                           62                             84
  CLUS_2                           33                             85
  CLUS_3                           21                            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(8Q24.21) MUTATED       19     10     52     12     23
  AMP PEAK  8(8Q24.21) WILD-TYPE     76     27     73     49     74
D8V10, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                           19                             76
  CLUS_2                           10                             27
  CLUS_3                           52                             73
  CLUS_4                           12                             49
  CLUS_5                           23                             74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(9Q34.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(9Q34.11) MUTATED        7     39      1
  AMP PEAK  9(9Q34.11) WILD-TYPE    228     77     67
D9V1, multiclass
        clus
vv       AMP PEAK  9(9Q34.11) MUTATED AMP PEAK  9(9Q34.11) WILD-TYPE
  CLUS_1                            7                            228
  CLUS_2                           39                             77
  CLUS_3                            1                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(9Q34.11) MUTATED        9      5     19
  AMP PEAK  9(9Q34.11) WILD-TYPE     87    101    110
D9V2, multiclass
        clus
vv       AMP PEAK  9(9Q34.11) MUTATED AMP PEAK  9(9Q34.11) WILD-TYPE
  CLUS_1                            9                             87
  CLUS_2                            5                            101
  CLUS_3                           19                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(9Q34.11) MUTATED        4      2     10
  AMP PEAK  9(9Q34.11) WILD-TYPE     37     57     52
D9V3, multiclass
        clus
vv       AMP PEAK  9(9Q34.11) MUTATED AMP PEAK  9(9Q34.11) WILD-TYPE
  CLUS_1                            4                             37
  CLUS_2                            2                             57
  CLUS_3                           10                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(9Q34.11) MUTATED        5     10      1
  AMP PEAK  9(9Q34.11) WILD-TYPE     42     55     49
D9V4, multiclass
        clus
vv       AMP PEAK  9(9Q34.11) MUTATED AMP PEAK  9(9Q34.11) WILD-TYPE
  CLUS_1                            5                             42
  CLUS_2                           10                             55
  CLUS_3                            1                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(9Q34.11) MUTATED       14      6     20
  AMP PEAK  9(9Q34.11) WILD-TYPE    110    106    114
D9V5, multiclass
        clus
vv       AMP PEAK  9(9Q34.11) MUTATED AMP PEAK  9(9Q34.11) WILD-TYPE
  CLUS_1                           14                            110
  CLUS_2                            6                            106
  CLUS_3                           20                            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(9Q34.11) MUTATED        8      8     24
  AMP PEAK  9(9Q34.11) WILD-TYPE    130     89    111
D9V6, multiclass
        clus
vv       AMP PEAK  9(9Q34.11) MUTATED AMP PEAK  9(9Q34.11) WILD-TYPE
  CLUS_1                            8                            130
  CLUS_2                            8                             89
  CLUS_3                           24                            111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(9Q34.11) MUTATED        5      4     16     14      7
  AMP PEAK  9(9Q34.11) WILD-TYPE     83     36    107     59     84
D9V7, multiclass
        clus
vv       AMP PEAK  9(9Q34.11) MUTATED AMP PEAK  9(9Q34.11) WILD-TYPE
  CLUS_1                            5                             83
  CLUS_2                            4                             36
  CLUS_3                           16                            107
  CLUS_4                           14                             59
  CLUS_5                            7                             84
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(9Q34.11) MUTATED        9      3     34
  AMP PEAK  9(9Q34.11) WILD-TYPE    140     67    162
D9V8, multiclass
        clus
vv       AMP PEAK  9(9Q34.11) MUTATED AMP PEAK  9(9Q34.11) WILD-TYPE
  CLUS_1                            9                            140
  CLUS_2                            3                             67
  CLUS_3                           34                            162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(9Q34.11) MUTATED       21     11     14
  AMP PEAK  9(9Q34.11) WILD-TYPE    125    107    137
D9V9, multiclass
        clus
vv       AMP PEAK  9(9Q34.11) MUTATED AMP PEAK  9(9Q34.11) WILD-TYPE
  CLUS_1                           21                            125
  CLUS_2                           11                            107
  CLUS_3                           14                            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(9Q34.11) MUTATED        4      3     24      8      7
  AMP PEAK  9(9Q34.11) WILD-TYPE     91     34    101     53     90
D9V10, multiclass
        clus
vv       AMP PEAK  9(9Q34.11) MUTATED AMP PEAK  9(9Q34.11) WILD-TYPE
  CLUS_1                            4                             91
  CLUS_2                            3                             34
  CLUS_3                           24                            101
  CLUS_4                            8                             53
  CLUS_5                            7                             90
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(11Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(11Q13.2) MUTATED        3     30      2
  AMP PEAK 10(11Q13.2) WILD-TYPE    232     86     66
D10V1, multiclass
        clus
vv       AMP PEAK 10(11Q13.2) MUTATED AMP PEAK 10(11Q13.2) WILD-TYPE
  CLUS_1                            3                            232
  CLUS_2                           30                             86
  CLUS_3                            2                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(11Q13.2) MUTATED        9      2      9
  AMP PEAK 10(11Q13.2) WILD-TYPE     87    104    120
D10V2, multiclass
        clus
vv       AMP PEAK 10(11Q13.2) MUTATED AMP PEAK 10(11Q13.2) WILD-TYPE
  CLUS_1                            9                             87
  CLUS_2                            2                            104
  CLUS_3                            9                            120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(11Q13.2) MUTATED        1      3      5
  AMP PEAK 10(11Q13.2) WILD-TYPE     40     56     57
D10V3, multiclass
        clus
vv       AMP PEAK 10(11Q13.2) MUTATED AMP PEAK 10(11Q13.2) WILD-TYPE
  CLUS_1                            1                             40
  CLUS_2                            3                             56
  CLUS_3                            5                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(11Q13.2) MUTATED        1      5      3
  AMP PEAK 10(11Q13.2) WILD-TYPE     46     60     47
D10V4, multiclass
        clus
vv       AMP PEAK 10(11Q13.2) MUTATED AMP PEAK 10(11Q13.2) WILD-TYPE
  CLUS_1                            1                             46
  CLUS_2                            5                             60
  CLUS_3                            3                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(11Q13.2) MUTATED       17      1      7
  AMP PEAK 10(11Q13.2) WILD-TYPE    107    111    127
D10V5, multiclass
        clus
vv       AMP PEAK 10(11Q13.2) MUTATED AMP PEAK 10(11Q13.2) WILD-TYPE
  CLUS_1                           17                            107
  CLUS_2                            1                            111
  CLUS_3                            7                            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(11Q13.2) MUTATED       13      2     10
  AMP PEAK 10(11Q13.2) WILD-TYPE    125     95    125
D10V6, multiclass
        clus
vv       AMP PEAK 10(11Q13.2) MUTATED AMP PEAK 10(11Q13.2) WILD-TYPE
  CLUS_1                           13                            125
  CLUS_2                            2                             95
  CLUS_3                           10                            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(11Q13.2) MUTATED        6      4     15      5      4
  AMP PEAK 10(11Q13.2) WILD-TYPE     82     36    108     68     87
D10V7, multiclass
        clus
vv       AMP PEAK 10(11Q13.2) MUTATED AMP PEAK 10(11Q13.2) WILD-TYPE
  CLUS_1                            6                             82
  CLUS_2                            4                             36
  CLUS_3                           15                            108
  CLUS_4                            5                             68
  CLUS_5                            4                             87
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(11Q13.2) MUTATED        7      5     22
  AMP PEAK 10(11Q13.2) WILD-TYPE    142     65    174
D10V8, multiclass
        clus
vv       AMP PEAK 10(11Q13.2) MUTATED AMP PEAK 10(11Q13.2) WILD-TYPE
  CLUS_1                            7                            142
  CLUS_2                            5                             65
  CLUS_3                           22                            174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(11Q13.2) MUTATED       19      7      8
  AMP PEAK 10(11Q13.2) WILD-TYPE    127    111    143
D10V9, multiclass
        clus
vv       AMP PEAK 10(11Q13.2) MUTATED AMP PEAK 10(11Q13.2) WILD-TYPE
  CLUS_1                           19                            127
  CLUS_2                            7                            111
  CLUS_3                            8                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(11Q13.2) MUTATED        4      3     21      1      5
  AMP PEAK 10(11Q13.2) WILD-TYPE     91     34    104     60     92
D10V10, multiclass
        clus
vv       AMP PEAK 10(11Q13.2) MUTATED AMP PEAK 10(11Q13.2) WILD-TYPE
  CLUS_1                            4                             91
  CLUS_2                            3                             34
  CLUS_3                           21                            104
  CLUS_4                            1                             60
  CLUS_5                            5                             92
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(12Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12Q23.1) MUTATED        8     17      1
  AMP PEAK 11(12Q23.1) WILD-TYPE    227     99     67
D11V1, multiclass
        clus
vv       AMP PEAK 11(12Q23.1) MUTATED AMP PEAK 11(12Q23.1) WILD-TYPE
  CLUS_1                            8                            227
  CLUS_2                           17                             99
  CLUS_3                            1                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12Q23.1) MUTATED       11      3      3
  AMP PEAK 11(12Q23.1) WILD-TYPE     85    103    126
D11V2, multiclass
        clus
vv       AMP PEAK 11(12Q23.1) MUTATED AMP PEAK 11(12Q23.1) WILD-TYPE
  CLUS_1                           11                             85
  CLUS_2                            3                            103
  CLUS_3                            3                            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12Q23.1) MUTATED        1      1      7
  AMP PEAK 11(12Q23.1) WILD-TYPE     40     58     55
D11V3, multiclass
        clus
vv       AMP PEAK 11(12Q23.1) MUTATED AMP PEAK 11(12Q23.1) WILD-TYPE
  CLUS_1                            1                             40
  CLUS_2                            1                             58
  CLUS_3                            7                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12Q23.1) MUTATED        1      7      1
  AMP PEAK 11(12Q23.1) WILD-TYPE     46     58     49
D11V4, multiclass
        clus
vv       AMP PEAK 11(12Q23.1) MUTATED AMP PEAK 11(12Q23.1) WILD-TYPE
  CLUS_1                            1                             46
  CLUS_2                            7                             58
  CLUS_3                            1                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12Q23.1) MUTATED       12      4      4
  AMP PEAK 11(12Q23.1) WILD-TYPE    112    108    130
D11V5, multiclass
        clus
vv       AMP PEAK 11(12Q23.1) MUTATED AMP PEAK 11(12Q23.1) WILD-TYPE
  CLUS_1                           12                            112
  CLUS_2                            4                            108
  CLUS_3                            4                            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12Q23.1) MUTATED       11      4      5
  AMP PEAK 11(12Q23.1) WILD-TYPE    127     93    130
D11V6, multiclass
        clus
vv       AMP PEAK 11(12Q23.1) MUTATED AMP PEAK 11(12Q23.1) WILD-TYPE
  CLUS_1                           11                            127
  CLUS_2                            4                             93
  CLUS_3                            5                            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(12Q23.1) MUTATED        5      4      8      7      1
  AMP PEAK 11(12Q23.1) WILD-TYPE     83     36    115     66     90
D11V7, multiclass
        clus
vv       AMP PEAK 11(12Q23.1) MUTATED AMP PEAK 11(12Q23.1) WILD-TYPE
  CLUS_1                            5                             83
  CLUS_2                            4                             36
  CLUS_3                            8                            115
  CLUS_4                            7                             66
  CLUS_5                            1                             90
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12Q23.1) MUTATED        6      4     15
  AMP PEAK 11(12Q23.1) WILD-TYPE    143     66    181
D11V8, multiclass
        clus
vv       AMP PEAK 11(12Q23.1) MUTATED AMP PEAK 11(12Q23.1) WILD-TYPE
  CLUS_1                            6                            143
  CLUS_2                            4                             66
  CLUS_3                           15                            181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12Q23.1) MUTATED       13      5      7
  AMP PEAK 11(12Q23.1) WILD-TYPE    133    113    144
D11V9, multiclass
        clus
vv       AMP PEAK 11(12Q23.1) MUTATED AMP PEAK 11(12Q23.1) WILD-TYPE
  CLUS_1                           13                            133
  CLUS_2                            5                            113
  CLUS_3                            7                            144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(12Q23.1) MUTATED        5      5      8      4      3
  AMP PEAK 11(12Q23.1) WILD-TYPE     90     32    117     57     94
D11V10, multiclass
        clus
vv       AMP PEAK 11(12Q23.1) MUTATED AMP PEAK 11(12Q23.1) WILD-TYPE
  CLUS_1                            5                             90
  CLUS_2                            5                             32
  CLUS_3                            8                            117
  CLUS_4                            4                             57
  CLUS_5                            3                             94
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(13Q12.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(13Q12.11) MUTATED        5     15      1
  AMP PEAK 12(13Q12.11) WILD-TYPE    230    101     67
D12V1, multiclass
        clus
vv       AMP PEAK 12(13Q12.11) MUTATED AMP PEAK 12(13Q12.11) WILD-TYPE
  CLUS_1                             5                             230
  CLUS_2                            15                             101
  CLUS_3                             1                              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(13Q12.11) MUTATED        5      1      9
  AMP PEAK 12(13Q12.11) WILD-TYPE     91    105    120
D12V2, multiclass
        clus
vv       AMP PEAK 12(13Q12.11) MUTATED AMP PEAK 12(13Q12.11) WILD-TYPE
  CLUS_1                             5                              91
  CLUS_2                             1                             105
  CLUS_3                             9                             120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(13Q12.11) MUTATED        0      2      7
  AMP PEAK 12(13Q12.11) WILD-TYPE     41     57     55
D12V3, multiclass
        clus
vv       AMP PEAK 12(13Q12.11) MUTATED AMP PEAK 12(13Q12.11) WILD-TYPE
  CLUS_1                             0                              41
  CLUS_2                             2                              57
  CLUS_3                             7                              55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(13Q12.11) MUTATED        0      7      2
  AMP PEAK 12(13Q12.11) WILD-TYPE     47     58     48
D12V4, multiclass
        clus
vv       AMP PEAK 12(13Q12.11) MUTATED AMP PEAK 12(13Q12.11) WILD-TYPE
  CLUS_1                             0                              47
  CLUS_2                             7                              58
  CLUS_3                             2                              48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(13Q12.11) MUTATED        9      1      8
  AMP PEAK 12(13Q12.11) WILD-TYPE    115    111    126
D12V5, multiclass
        clus
vv       AMP PEAK 12(13Q12.11) MUTATED AMP PEAK 12(13Q12.11) WILD-TYPE
  CLUS_1                             9                             115
  CLUS_2                             1                             111
  CLUS_3                             8                             126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(13Q12.11) MUTATED        5      2     11
  AMP PEAK 12(13Q12.11) WILD-TYPE    133     95    124
D12V6, multiclass
        clus
vv       AMP PEAK 12(13Q12.11) MUTATED AMP PEAK 12(13Q12.11) WILD-TYPE
  CLUS_1                             5                             133
  CLUS_2                             2                              95
  CLUS_3                            11                             124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(13Q12.11) MUTATED        3      1     10      2      4
  AMP PEAK 12(13Q12.11) WILD-TYPE     85     39    113     71     87
D12V7, multiclass
        clus
vv       AMP PEAK 12(13Q12.11) MUTATED AMP PEAK 12(13Q12.11) WILD-TYPE
  CLUS_1                             3                              85
  CLUS_2                             1                              39
  CLUS_3                            10                             113
  CLUS_4                             2                              71
  CLUS_5                             4                              87
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(13Q12.11) MUTATED        3      2     15
  AMP PEAK 12(13Q12.11) WILD-TYPE    146     68    181
D12V8, multiclass
        clus
vv       AMP PEAK 12(13Q12.11) MUTATED AMP PEAK 12(13Q12.11) WILD-TYPE
  CLUS_1                             3                             146
  CLUS_2                             2                              68
  CLUS_3                            15                             181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(13Q12.11) MUTATED       12      6      2
  AMP PEAK 12(13Q12.11) WILD-TYPE    134    112    149
D12V9, multiclass
        clus
vv       AMP PEAK 12(13Q12.11) MUTATED AMP PEAK 12(13Q12.11) WILD-TYPE
  CLUS_1                            12                             134
  CLUS_2                             6                             112
  CLUS_3                             2                             149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(13Q12.11) MUTATED        2      0     15      0      3
  AMP PEAK 12(13Q12.11) WILD-TYPE     93     37    110     61     94
D12V10, multiclass
        clus
vv       AMP PEAK 12(13Q12.11) MUTATED AMP PEAK 12(13Q12.11) WILD-TYPE
  CLUS_1                             2                              93
  CLUS_2                             0                              37
  CLUS_3                            15                             110
  CLUS_4                             0                              61
  CLUS_5                             3                              94
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(14Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(14Q21.1) MUTATED        1     16      4
  AMP PEAK 13(14Q21.1) WILD-TYPE    234    100     64
D13V1, multiclass
        clus
vv       AMP PEAK 13(14Q21.1) MUTATED AMP PEAK 13(14Q21.1) WILD-TYPE
  CLUS_1                            1                            234
  CLUS_2                           16                            100
  CLUS_3                            4                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(14Q21.1) MUTATED       10      1      6
  AMP PEAK 13(14Q21.1) WILD-TYPE     86    105    123
D13V2, multiclass
        clus
vv       AMP PEAK 13(14Q21.1) MUTATED AMP PEAK 13(14Q21.1) WILD-TYPE
  CLUS_1                           10                             86
  CLUS_2                            1                            105
  CLUS_3                            6                            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(14Q21.1) MUTATED        1      2      7
  AMP PEAK 13(14Q21.1) WILD-TYPE     40     57     55
D13V3, multiclass
        clus
vv       AMP PEAK 13(14Q21.1) MUTATED AMP PEAK 13(14Q21.1) WILD-TYPE
  CLUS_1                            1                             40
  CLUS_2                            2                             57
  CLUS_3                            7                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(14Q21.1) MUTATED        1      7      2
  AMP PEAK 13(14Q21.1) WILD-TYPE     46     58     48
D13V4, multiclass
        clus
vv       AMP PEAK 13(14Q21.1) MUTATED AMP PEAK 13(14Q21.1) WILD-TYPE
  CLUS_1                            1                             46
  CLUS_2                            7                             58
  CLUS_3                            2                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(14Q21.1) MUTATED       10      2      6
  AMP PEAK 13(14Q21.1) WILD-TYPE    114    110    128
D13V5, multiclass
        clus
vv       AMP PEAK 13(14Q21.1) MUTATED AMP PEAK 13(14Q21.1) WILD-TYPE
  CLUS_1                           10                            114
  CLUS_2                            2                            110
  CLUS_3                            6                            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(14Q21.1) MUTATED        9      2      7
  AMP PEAK 13(14Q21.1) WILD-TYPE    129     95    128
D13V6, multiclass
        clus
vv       AMP PEAK 13(14Q21.1) MUTATED AMP PEAK 13(14Q21.1) WILD-TYPE
  CLUS_1                            9                            129
  CLUS_2                            2                             95
  CLUS_3                            7                            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(14Q21.1) MUTATED        3      3      6      4      5
  AMP PEAK 13(14Q21.1) WILD-TYPE     85     37    117     69     86
D13V7, multiclass
        clus
vv       AMP PEAK 13(14Q21.1) MUTATED AMP PEAK 13(14Q21.1) WILD-TYPE
  CLUS_1                            3                             85
  CLUS_2                            3                             37
  CLUS_3                            6                            117
  CLUS_4                            4                             69
  CLUS_5                            5                             86
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(14Q21.1) MUTATED        4      3     14
  AMP PEAK 13(14Q21.1) WILD-TYPE    145     67    182
D13V8, multiclass
        clus
vv       AMP PEAK 13(14Q21.1) MUTATED AMP PEAK 13(14Q21.1) WILD-TYPE
  CLUS_1                            4                            145
  CLUS_2                            3                             67
  CLUS_3                           14                            182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(14Q21.1) MUTATED       11      5      5
  AMP PEAK 13(14Q21.1) WILD-TYPE    135    113    146
D13V9, multiclass
        clus
vv       AMP PEAK 13(14Q21.1) MUTATED AMP PEAK 13(14Q21.1) WILD-TYPE
  CLUS_1                           11                            135
  CLUS_2                            5                            113
  CLUS_3                            5                            146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(14Q21.1) MUTATED        4      2     10      1      4
  AMP PEAK 13(14Q21.1) WILD-TYPE     91     35    115     60     93
D13V10, multiclass
        clus
vv       AMP PEAK 13(14Q21.1) MUTATED AMP PEAK 13(14Q21.1) WILD-TYPE
  CLUS_1                            4                             91
  CLUS_2                            2                             35
  CLUS_3                           10                            115
  CLUS_4                            1                             60
  CLUS_5                            4                             93
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(15Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(15Q11.2) MUTATED        5      7      1
  AMP PEAK 14(15Q11.2) WILD-TYPE    230    109     67
D14V1, multiclass
        clus
vv       AMP PEAK 14(15Q11.2) MUTATED AMP PEAK 14(15Q11.2) WILD-TYPE
  CLUS_1                            5                            230
  CLUS_2                            7                            109
  CLUS_3                            1                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(15Q11.2) MUTATED        4      1      3
  AMP PEAK 14(15Q11.2) WILD-TYPE     92    105    126
D14V2, multiclass
        clus
vv       AMP PEAK 14(15Q11.2) MUTATED AMP PEAK 14(15Q11.2) WILD-TYPE
  CLUS_1                            4                             92
  CLUS_2                            1                            105
  CLUS_3                            3                            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(15Q11.2) MUTATED        0      1      2
  AMP PEAK 14(15Q11.2) WILD-TYPE     41     58     60
D14V3, multiclass
        clus
vv       AMP PEAK 14(15Q11.2) MUTATED AMP PEAK 14(15Q11.2) WILD-TYPE
  CLUS_1                            0                             41
  CLUS_2                            1                             58
  CLUS_3                            2                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(15Q11.2) MUTATED        0      2      1
  AMP PEAK 14(15Q11.2) WILD-TYPE     47     63     49
D14V4, multiclass
        clus
vv       AMP PEAK 14(15Q11.2) MUTATED AMP PEAK 14(15Q11.2) WILD-TYPE
  CLUS_1                            0                             47
  CLUS_2                            2                             63
  CLUS_3                            1                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(15Q11.2) MUTATED        4      1      4
  AMP PEAK 14(15Q11.2) WILD-TYPE    120    111    130
D14V5, multiclass
        clus
vv       AMP PEAK 14(15Q11.2) MUTATED AMP PEAK 14(15Q11.2) WILD-TYPE
  CLUS_1                            4                            120
  CLUS_2                            1                            111
  CLUS_3                            4                            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(15Q11.2) MUTATED        3      1      5
  AMP PEAK 14(15Q11.2) WILD-TYPE    135     96    130
D14V6, multiclass
        clus
vv       AMP PEAK 14(15Q11.2) MUTATED AMP PEAK 14(15Q11.2) WILD-TYPE
  CLUS_1                            3                            135
  CLUS_2                            1                             96
  CLUS_3                            5                            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(15Q11.2) MUTATED        3      2      5      1      2
  AMP PEAK 14(15Q11.2) WILD-TYPE     85     38    118     72     89
D14V7, multiclass
        clus
vv       AMP PEAK 14(15Q11.2) MUTATED AMP PEAK 14(15Q11.2) WILD-TYPE
  CLUS_1                            3                             85
  CLUS_2                            2                             38
  CLUS_3                            5                            118
  CLUS_4                            1                             72
  CLUS_5                            2                             89
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(15Q11.2) MUTATED        5      1      7
  AMP PEAK 14(15Q11.2) WILD-TYPE    144     69    189
D14V8, multiclass
        clus
vv       AMP PEAK 14(15Q11.2) MUTATED AMP PEAK 14(15Q11.2) WILD-TYPE
  CLUS_1                            5                            144
  CLUS_2                            1                             69
  CLUS_3                            7                            189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(15Q11.2) MUTATED        6      2      5
  AMP PEAK 14(15Q11.2) WILD-TYPE    140    116    146
D14V9, multiclass
        clus
vv       AMP PEAK 14(15Q11.2) MUTATED AMP PEAK 14(15Q11.2) WILD-TYPE
  CLUS_1                            6                            140
  CLUS_2                            2                            116
  CLUS_3                            5                            146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(15Q11.2) MUTATED        3      1      6      0      3
  AMP PEAK 14(15Q11.2) WILD-TYPE     92     36    119     61     94
D14V10, multiclass
        clus
vv       AMP PEAK 14(15Q11.2) MUTATED AMP PEAK 14(15Q11.2) WILD-TYPE
  CLUS_1                            3                             92
  CLUS_2                            1                             36
  CLUS_3                            6                            119
  CLUS_4                            0                             61
  CLUS_5                            3                             94
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(16Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(16Q11.2) MUTATED        8     15      1
  AMP PEAK 15(16Q11.2) WILD-TYPE    227    101     67
D15V1, multiclass
        clus
vv       AMP PEAK 15(16Q11.2) MUTATED AMP PEAK 15(16Q11.2) WILD-TYPE
  CLUS_1                            8                            227
  CLUS_2                           15                            101
  CLUS_3                            1                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(16Q11.2) MUTATED        8      2      6
  AMP PEAK 15(16Q11.2) WILD-TYPE     88    104    123
D15V2, multiclass
        clus
vv       AMP PEAK 15(16Q11.2) MUTATED AMP PEAK 15(16Q11.2) WILD-TYPE
  CLUS_1                            8                             88
  CLUS_2                            2                            104
  CLUS_3                            6                            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(16Q11.2) MUTATED        2      4      4
  AMP PEAK 15(16Q11.2) WILD-TYPE     39     55     58
D15V3, multiclass
        clus
vv       AMP PEAK 15(16Q11.2) MUTATED AMP PEAK 15(16Q11.2) WILD-TYPE
  CLUS_1                            2                             39
  CLUS_2                            4                             55
  CLUS_3                            4                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(16Q11.2) MUTATED        3      4      3
  AMP PEAK 15(16Q11.2) WILD-TYPE     44     61     47
D15V4, multiclass
        clus
vv       AMP PEAK 15(16Q11.2) MUTATED AMP PEAK 15(16Q11.2) WILD-TYPE
  CLUS_1                            3                             44
  CLUS_2                            4                             61
  CLUS_3                            3                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(16Q11.2) MUTATED        9      4      7
  AMP PEAK 15(16Q11.2) WILD-TYPE    115    108    127
D15V5, multiclass
        clus
vv       AMP PEAK 15(16Q11.2) MUTATED AMP PEAK 15(16Q11.2) WILD-TYPE
  CLUS_1                            9                            115
  CLUS_2                            4                            108
  CLUS_3                            7                            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(16Q11.2) MUTATED        6      2     12
  AMP PEAK 15(16Q11.2) WILD-TYPE    132     95    123
D15V6, multiclass
        clus
vv       AMP PEAK 15(16Q11.2) MUTATED AMP PEAK 15(16Q11.2) WILD-TYPE
  CLUS_1                            6                            132
  CLUS_2                            2                             95
  CLUS_3                           12                            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(16Q11.2) MUTATED        1      0      9      4      9
  AMP PEAK 15(16Q11.2) WILD-TYPE     87     40    114     69     82
D15V7, multiclass
        clus
vv       AMP PEAK 15(16Q11.2) MUTATED AMP PEAK 15(16Q11.2) WILD-TYPE
  CLUS_1                            1                             87
  CLUS_2                            0                             40
  CLUS_3                            9                            114
  CLUS_4                            4                             69
  CLUS_5                            9                             82
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(16Q11.2) MUTATED        3      0     20
  AMP PEAK 15(16Q11.2) WILD-TYPE    146     70    176
D15V8, multiclass
        clus
vv       AMP PEAK 15(16Q11.2) MUTATED AMP PEAK 15(16Q11.2) WILD-TYPE
  CLUS_1                            3                            146
  CLUS_2                            0                             70
  CLUS_3                           20                            176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(16Q11.2) MUTATED       12     11      0
  AMP PEAK 15(16Q11.2) WILD-TYPE    134    107    151
D15V9, multiclass
        clus
vv       AMP PEAK 15(16Q11.2) MUTATED AMP PEAK 15(16Q11.2) WILD-TYPE
  CLUS_1                           12                            134
  CLUS_2                           11                            107
  CLUS_3                            0                            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(16Q11.2) MUTATED        2      0     13      1      7
  AMP PEAK 15(16Q11.2) WILD-TYPE     93     37    112     60     90
D15V10, multiclass
        clus
vv       AMP PEAK 15(16Q11.2) MUTATED AMP PEAK 15(16Q11.2) WILD-TYPE
  CLUS_1                            2                             93
  CLUS_2                            0                             37
  CLUS_3                           13                            112
  CLUS_4                            1                             60
  CLUS_5                            7                             90
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(17Q23.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(17Q23.2) MUTATED        4     14      0
  AMP PEAK 16(17Q23.2) WILD-TYPE    231    102     68
D16V1, multiclass
        clus
vv       AMP PEAK 16(17Q23.2) MUTATED AMP PEAK 16(17Q23.2) WILD-TYPE
  CLUS_1                            4                            231
  CLUS_2                           14                            102
  CLUS_3                            0                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(17Q23.2) MUTATED        4      5      3
  AMP PEAK 16(17Q23.2) WILD-TYPE     92    101    126
D16V2, multiclass
        clus
vv       AMP PEAK 16(17Q23.2) MUTATED AMP PEAK 16(17Q23.2) WILD-TYPE
  CLUS_1                            4                             92
  CLUS_2                            5                            101
  CLUS_3                            3                            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(17Q23.2) MUTATED        1      2      3
  AMP PEAK 16(17Q23.2) WILD-TYPE     40     57     59
D16V3, multiclass
        clus
vv       AMP PEAK 16(17Q23.2) MUTATED AMP PEAK 16(17Q23.2) WILD-TYPE
  CLUS_1                            1                             40
  CLUS_2                            2                             57
  CLUS_3                            3                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(17Q23.2) MUTATED        0      3      3
  AMP PEAK 16(17Q23.2) WILD-TYPE     47     62     47
D16V4, multiclass
        clus
vv       AMP PEAK 16(17Q23.2) MUTATED AMP PEAK 16(17Q23.2) WILD-TYPE
  CLUS_1                            0                             47
  CLUS_2                            3                             62
  CLUS_3                            3                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(17Q23.2) MUTATED        7      2      6
  AMP PEAK 16(17Q23.2) WILD-TYPE    117    110    128
D16V5, multiclass
        clus
vv       AMP PEAK 16(17Q23.2) MUTATED AMP PEAK 16(17Q23.2) WILD-TYPE
  CLUS_1                            7                            117
  CLUS_2                            2                            110
  CLUS_3                            6                            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(17Q23.2) MUTATED        3      3      9
  AMP PEAK 16(17Q23.2) WILD-TYPE    135     94    126
D16V6, multiclass
        clus
vv       AMP PEAK 16(17Q23.2) MUTATED AMP PEAK 16(17Q23.2) WILD-TYPE
  CLUS_1                            3                            135
  CLUS_2                            3                             94
  CLUS_3                            9                            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(17Q23.2) MUTATED        2      1     10      2      3
  AMP PEAK 16(17Q23.2) WILD-TYPE     86     39    113     71     88
D16V7, multiclass
        clus
vv       AMP PEAK 16(17Q23.2) MUTATED AMP PEAK 16(17Q23.2) WILD-TYPE
  CLUS_1                            2                             86
  CLUS_2                            1                             39
  CLUS_3                           10                            113
  CLUS_4                            2                             71
  CLUS_5                            3                             88
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(17Q23.2) MUTATED        3      1     14
  AMP PEAK 16(17Q23.2) WILD-TYPE    146     69    182
D16V8, multiclass
        clus
vv       AMP PEAK 16(17Q23.2) MUTATED AMP PEAK 16(17Q23.2) WILD-TYPE
  CLUS_1                            3                            146
  CLUS_2                            1                             69
  CLUS_3                           14                            182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(17Q23.2) MUTATED        9      5      4
  AMP PEAK 16(17Q23.2) WILD-TYPE    137    113    147
D16V9, multiclass
        clus
vv       AMP PEAK 16(17Q23.2) MUTATED AMP PEAK 16(17Q23.2) WILD-TYPE
  CLUS_1                            9                            137
  CLUS_2                            5                            113
  CLUS_3                            4                            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(17Q23.2) MUTATED        3      1     10      2      2
  AMP PEAK 16(17Q23.2) WILD-TYPE     92     36    115     59     95
D16V10, multiclass
        clus
vv       AMP PEAK 16(17Q23.2) MUTATED AMP PEAK 16(17Q23.2) WILD-TYPE
  CLUS_1                            3                             92
  CLUS_2                            1                             36
  CLUS_3                           10                            115
  CLUS_4                            2                             59
  CLUS_5                            2                             95
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(18Q21.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(18Q21.31) MUTATED        1      9      0
  AMP PEAK 17(18Q21.31) WILD-TYPE    234    107     68
D17V1, multiclass
        clus
vv       AMP PEAK 17(18Q21.31) MUTATED AMP PEAK 17(18Q21.31) WILD-TYPE
  CLUS_1                             1                             234
  CLUS_2                             9                             107
  CLUS_3                             0                              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(18Q21.31) MUTATED        2      1      4
  AMP PEAK 17(18Q21.31) WILD-TYPE     94    105    125
D17V2, multiclass
        clus
vv       AMP PEAK 17(18Q21.31) MUTATED AMP PEAK 17(18Q21.31) WILD-TYPE
  CLUS_1                             2                              94
  CLUS_2                             1                             105
  CLUS_3                             4                             125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(18Q21.31) MUTATED        1      1      3
  AMP PEAK 17(18Q21.31) WILD-TYPE     40     58     59
D17V3, multiclass
        clus
vv       AMP PEAK 17(18Q21.31) MUTATED AMP PEAK 17(18Q21.31) WILD-TYPE
  CLUS_1                             1                              40
  CLUS_2                             1                              58
  CLUS_3                             3                              59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(18Q21.31) MUTATED        0      3      2
  AMP PEAK 17(18Q21.31) WILD-TYPE     47     62     48
D17V4, multiclass
        clus
vv       AMP PEAK 17(18Q21.31) MUTATED AMP PEAK 17(18Q21.31) WILD-TYPE
  CLUS_1                             0                              47
  CLUS_2                             3                              62
  CLUS_3                             2                              48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(18Q21.31) MUTATED        4      0      5
  AMP PEAK 17(18Q21.31) WILD-TYPE    120    112    129
D17V5, multiclass
        clus
vv       AMP PEAK 17(18Q21.31) MUTATED AMP PEAK 17(18Q21.31) WILD-TYPE
  CLUS_1                             4                             120
  CLUS_2                             0                             112
  CLUS_3                             5                             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(18Q21.31) MUTATED        3      1      5
  AMP PEAK 17(18Q21.31) WILD-TYPE    135     96    130
D17V6, multiclass
        clus
vv       AMP PEAK 17(18Q21.31) MUTATED AMP PEAK 17(18Q21.31) WILD-TYPE
  CLUS_1                             3                             135
  CLUS_2                             1                              96
  CLUS_3                             5                             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(18Q21.31) MUTATED        3      0      4      1      2
  AMP PEAK 17(18Q21.31) WILD-TYPE     85     40    119     72     89
D17V7, multiclass
        clus
vv       AMP PEAK 17(18Q21.31) MUTATED AMP PEAK 17(18Q21.31) WILD-TYPE
  CLUS_1                             3                              85
  CLUS_2                             0                              40
  CLUS_3                             4                             119
  CLUS_4                             1                              72
  CLUS_5                             2                              89
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(18Q21.31) MUTATED        2      1      7
  AMP PEAK 17(18Q21.31) WILD-TYPE    147     69    189
D17V8, multiclass
        clus
vv       AMP PEAK 17(18Q21.31) MUTATED AMP PEAK 17(18Q21.31) WILD-TYPE
  CLUS_1                             2                             147
  CLUS_2                             1                              69
  CLUS_3                             7                             189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(18Q21.31) MUTATED        5      3      2
  AMP PEAK 17(18Q21.31) WILD-TYPE    141    115    149
D17V9, multiclass
        clus
vv       AMP PEAK 17(18Q21.31) MUTATED AMP PEAK 17(18Q21.31) WILD-TYPE
  CLUS_1                             5                             141
  CLUS_2                             3                             115
  CLUS_3                             2                             149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(18Q21.31) MUTATED        0      0      6      1      3
  AMP PEAK 17(18Q21.31) WILD-TYPE     95     37    119     60     94
D17V10, multiclass
        clus
vv       AMP PEAK 17(18Q21.31) MUTATED AMP PEAK 17(18Q21.31) WILD-TYPE
  CLUS_1                             0                              95
  CLUS_2                             0                              37
  CLUS_3                             6                             119
  CLUS_4                             1                              60
  CLUS_5                             3                              94
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(19Q13.43) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(19Q13.43) MUTATED        0     14      0
  AMP PEAK 18(19Q13.43) WILD-TYPE    235    102     68
D18V1, multiclass
        clus
vv       AMP PEAK 18(19Q13.43) MUTATED AMP PEAK 18(19Q13.43) WILD-TYPE
  CLUS_1                             0                             235
  CLUS_2                            14                             102
  CLUS_3                             0                              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(19Q13.43) MUTATED        3      0      5
  AMP PEAK 18(19Q13.43) WILD-TYPE     93    106    124
D18V2, multiclass
        clus
vv       AMP PEAK 18(19Q13.43) MUTATED AMP PEAK 18(19Q13.43) WILD-TYPE
  CLUS_1                             3                              93
  CLUS_2                             0                             106
  CLUS_3                             5                             124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(19Q13.43) MUTATED        0      1      3
  AMP PEAK 18(19Q13.43) WILD-TYPE     41     58     59
D18V3, multiclass
        clus
vv       AMP PEAK 18(19Q13.43) MUTATED AMP PEAK 18(19Q13.43) WILD-TYPE
  CLUS_1                             0                              41
  CLUS_2                             1                              58
  CLUS_3                             3                              59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(19Q13.43) MUTATED        0      3      1
  AMP PEAK 18(19Q13.43) WILD-TYPE     47     62     49
D18V4, multiclass
        clus
vv       AMP PEAK 18(19Q13.43) MUTATED AMP PEAK 18(19Q13.43) WILD-TYPE
  CLUS_1                             0                              47
  CLUS_2                             3                              62
  CLUS_3                             1                              49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(19Q13.43) MUTATED        7      0      4
  AMP PEAK 18(19Q13.43) WILD-TYPE    117    112    130
D18V5, multiclass
        clus
vv       AMP PEAK 18(19Q13.43) MUTATED AMP PEAK 18(19Q13.43) WILD-TYPE
  CLUS_1                             7                             117
  CLUS_2                             0                             112
  CLUS_3                             4                             130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(19Q13.43) MUTATED        3      1      7
  AMP PEAK 18(19Q13.43) WILD-TYPE    135     96    128
D18V6, multiclass
        clus
vv       AMP PEAK 18(19Q13.43) MUTATED AMP PEAK 18(19Q13.43) WILD-TYPE
  CLUS_1                             3                             135
  CLUS_2                             1                              96
  CLUS_3                             7                             128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(19Q13.43) MUTATED        0      2      6      2      4
  AMP PEAK 18(19Q13.43) WILD-TYPE     88     38    117     71     87
D18V7, multiclass
        clus
vv       AMP PEAK 18(19Q13.43) MUTATED AMP PEAK 18(19Q13.43) WILD-TYPE
  CLUS_1                             0                              88
  CLUS_2                             2                              38
  CLUS_3                             6                             117
  CLUS_4                             2                              71
  CLUS_5                             4                              87
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(19Q13.43) MUTATED        0      3     11
  AMP PEAK 18(19Q13.43) WILD-TYPE    149     67    185
D18V8, multiclass
        clus
vv       AMP PEAK 18(19Q13.43) MUTATED AMP PEAK 18(19Q13.43) WILD-TYPE
  CLUS_1                             0                             149
  CLUS_2                             3                              67
  CLUS_3                            11                             185
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(19Q13.43) MUTATED        7      5      2
  AMP PEAK 18(19Q13.43) WILD-TYPE    139    113    149
D18V9, multiclass
        clus
vv       AMP PEAK 18(19Q13.43) MUTATED AMP PEAK 18(19Q13.43) WILD-TYPE
  CLUS_1                             7                             139
  CLUS_2                             5                             113
  CLUS_3                             2                             149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(19Q13.43) MUTATED        0      1     11      0      2
  AMP PEAK 18(19Q13.43) WILD-TYPE     95     36    114     61     95
D18V10, multiclass
        clus
vv       AMP PEAK 18(19Q13.43) MUTATED AMP PEAK 18(19Q13.43) WILD-TYPE
  CLUS_1                             0                              95
  CLUS_2                             1                              36
  CLUS_3                            11                             114
  CLUS_4                             0                              61
  CLUS_5                             2                              95
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(20Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(20Q13.2) MUTATED        4     27      3
  AMP PEAK 19(20Q13.2) WILD-TYPE    231     89     65
D19V1, multiclass
        clus
vv       AMP PEAK 19(20Q13.2) MUTATED AMP PEAK 19(20Q13.2) WILD-TYPE
  CLUS_1                            4                            231
  CLUS_2                           27                             89
  CLUS_3                            3                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(20Q13.2) MUTATED       14      1      6
  AMP PEAK 19(20Q13.2) WILD-TYPE     82    105    123
D19V2, multiclass
        clus
vv       AMP PEAK 19(20Q13.2) MUTATED AMP PEAK 19(20Q13.2) WILD-TYPE
  CLUS_1                           14                             82
  CLUS_2                            1                            105
  CLUS_3                            6                            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(20Q13.2) MUTATED        2      7      3
  AMP PEAK 19(20Q13.2) WILD-TYPE     39     52     59
D19V3, multiclass
        clus
vv       AMP PEAK 19(20Q13.2) MUTATED AMP PEAK 19(20Q13.2) WILD-TYPE
  CLUS_1                            2                             39
  CLUS_2                            7                             52
  CLUS_3                            3                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(20Q13.2) MUTATED        3      3      6
  AMP PEAK 19(20Q13.2) WILD-TYPE     44     62     44
D19V4, multiclass
        clus
vv       AMP PEAK 19(20Q13.2) MUTATED AMP PEAK 19(20Q13.2) WILD-TYPE
  CLUS_1                            3                             44
  CLUS_2                            3                             62
  CLUS_3                            6                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(20Q13.2) MUTATED       16      2      9
  AMP PEAK 19(20Q13.2) WILD-TYPE    108    110    125
D19V5, multiclass
        clus
vv       AMP PEAK 19(20Q13.2) MUTATED AMP PEAK 19(20Q13.2) WILD-TYPE
  CLUS_1                           16                            108
  CLUS_2                            2                            110
  CLUS_3                            9                            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(20Q13.2) MUTATED       14      1     12
  AMP PEAK 19(20Q13.2) WILD-TYPE    124     96    123
D19V6, multiclass
        clus
vv       AMP PEAK 19(20Q13.2) MUTATED AMP PEAK 19(20Q13.2) WILD-TYPE
  CLUS_1                           14                            124
  CLUS_2                            1                             96
  CLUS_3                           12                            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(20Q13.2) MUTATED        4      1     15      8      6
  AMP PEAK 19(20Q13.2) WILD-TYPE     84     39    108     65     85
D19V7, multiclass
        clus
vv       AMP PEAK 19(20Q13.2) MUTATED AMP PEAK 19(20Q13.2) WILD-TYPE
  CLUS_1                            4                             84
  CLUS_2                            1                             39
  CLUS_3                           15                            108
  CLUS_4                            8                             65
  CLUS_5                            6                             85
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(20Q13.2) MUTATED        5      8     21
  AMP PEAK 19(20Q13.2) WILD-TYPE    144     62    175
D19V8, multiclass
        clus
vv       AMP PEAK 19(20Q13.2) MUTATED AMP PEAK 19(20Q13.2) WILD-TYPE
  CLUS_1                            5                            144
  CLUS_2                            8                             62
  CLUS_3                           21                            175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(20Q13.2) MUTATED       19      9      6
  AMP PEAK 19(20Q13.2) WILD-TYPE    127    109    145
D19V9, multiclass
        clus
vv       AMP PEAK 19(20Q13.2) MUTATED AMP PEAK 19(20Q13.2) WILD-TYPE
  CLUS_1                           19                            127
  CLUS_2                            9                            109
  CLUS_3                            6                            145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(20Q13.2) MUTATED        2      6     20      1      5
  AMP PEAK 19(20Q13.2) WILD-TYPE     93     31    105     60     92
D19V10, multiclass
        clus
vv       AMP PEAK 19(20Q13.2) MUTATED AMP PEAK 19(20Q13.2) WILD-TYPE
  CLUS_1                            2                             93
  CLUS_2                            6                             31
  CLUS_3                           20                            105
  CLUS_4                            1                             60
  CLUS_5                            5                             92
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(XP22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(XP22.2) MUTATED        3     17      0
  AMP PEAK 20(XP22.2) WILD-TYPE    232     99     68
D20V1, multiclass
        clus
vv       AMP PEAK 20(XP22.2) MUTATED AMP PEAK 20(XP22.2) WILD-TYPE
  CLUS_1                           3                           232
  CLUS_2                          17                            99
  CLUS_3                           0                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(XP22.2) MUTATED        6      2      4
  AMP PEAK 20(XP22.2) WILD-TYPE     90    104    125
D20V2, multiclass
        clus
vv       AMP PEAK 20(XP22.2) MUTATED AMP PEAK 20(XP22.2) WILD-TYPE
  CLUS_1                           6                            90
  CLUS_2                           2                           104
  CLUS_3                           4                           125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(XP22.2) MUTATED        1      0      1
  AMP PEAK 20(XP22.2) WILD-TYPE     40     59     61
D20V3, multiclass
[1] "Remove cluster labels:"      "AMP PEAK 20(XP22.2) MUTATED"
clus
  AMP PEAK 20(XP22.2) MUTATED AMP PEAK 20(XP22.2) WILD-TYPE 
                            2                           160 
                   TCGA-CH-5737                    TCGA-CH-5738 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5748 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-CH-5750                    TCGA-CH-5751 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-CH-5752                    TCGA-CH-5753 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-CH-5754                    TCGA-CH-5761 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-CH-5762                    TCGA-CH-5763 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-CH-5764                    TCGA-CH-5765 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-CH-5766                    TCGA-CH-5767 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-CH-5768                    TCGA-CH-5769 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-CH-5771                    TCGA-CH-5772 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-CH-5788                    TCGA-CH-5789 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-CH-5790                    TCGA-CH-5791 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-CH-5792                    TCGA-CH-5794 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-5494                    TCGA-EJ-5495 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-5496                    TCGA-EJ-5497 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-5498                    TCGA-EJ-5499 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-5501                    TCGA-EJ-5502 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-5503                    TCGA-EJ-5504 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-5505                    TCGA-EJ-5506 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-5507                    TCGA-EJ-5508 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-5509                    TCGA-EJ-5510 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-5511                    TCGA-EJ-5512 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-5514                    TCGA-EJ-5515 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-5516                    TCGA-EJ-5517 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-5518                    TCGA-EJ-5519 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-5521                    TCGA-EJ-5522 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-5524                    TCGA-EJ-5525 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-5526                    TCGA-EJ-5527 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-5530                    TCGA-EJ-5531 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-5532                    TCGA-EJ-5542 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-7115                    TCGA-EJ-7125 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7321 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7784 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-7785                    TCGA-EJ-7786 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-7788                    TCGA-EJ-7791 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7793 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-7794                    TCGA-EJ-7797 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-8468                    TCGA-EJ-8469 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-8470                    TCGA-EJ-8474 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-A46B                    TCGA-EJ-A46D 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-A46E                    TCGA-EJ-A46F 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-A46G                    TCGA-EJ-A65E 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-A65M                    TCGA-FC-7708 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-FC-7961                    TCGA-FC-A4JI 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-FC-A5OB                    TCGA-G9-6329 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-G9-6338                    TCGA-G9-6342 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-G9-6343                    TCGA-G9-6351 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6370 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-G9-6371                    TCGA-G9-6373 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-G9-6377                    TCGA-G9-6378 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-G9-6384                    TCGA-G9-6494 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-G9-7510                    TCGA-G9-7521 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-G9-7522                    TCGA-G9-7523 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-G9-7525                    TCGA-H9-7775 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-HC-7077                    TCGA-HC-7079 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-HC-7081                    TCGA-HC-7210 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-HC-7211                    TCGA-HC-7212 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-HC-7213                    TCGA-HC-7232 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-HC-7233                    TCGA-HC-7736 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-HC-7740                    TCGA-HC-7744 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-HC-7748                    TCGA-HC-7817 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-HC-8264                    TCGA-HI-7168 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-HI-7171                    TCGA-J4-8198 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-J4-8200                    TCGA-J9-A52C 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-J9-A52E                    TCGA-KC-A4BL 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-KC-A4BN                    TCGA-KC-A4BO 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-KC-A4BR                    TCGA-KC-A4BV 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-KK-A59V                    TCGA-KK-A59X 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-KK-A59Y                    TCGA-KK-A59Z 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(XP22.2) MUTATED        1      1      0
  AMP PEAK 20(XP22.2) WILD-TYPE     46     64     50
D20V4, multiclass
[1] "Remove cluster labels:"      "AMP PEAK 20(XP22.2) MUTATED"
clus
  AMP PEAK 20(XP22.2) MUTATED AMP PEAK 20(XP22.2) WILD-TYPE 
                            2                           160 
                   TCGA-CH-5737                    TCGA-CH-5738 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-CH-5739                    TCGA-CH-5740 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-CH-5741                    TCGA-CH-5743 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-CH-5744                    TCGA-CH-5748 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-CH-5750                    TCGA-CH-5751 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-CH-5752                    TCGA-CH-5753 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-CH-5754                    TCGA-CH-5761 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-CH-5762                    TCGA-CH-5763 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-CH-5764                    TCGA-CH-5765 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-CH-5766                    TCGA-CH-5767 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-CH-5768                    TCGA-CH-5769 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-CH-5771                    TCGA-CH-5772 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-CH-5788                    TCGA-CH-5789 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-CH-5790                    TCGA-CH-5791 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-CH-5792                    TCGA-CH-5794 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-5494                    TCGA-EJ-5495 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-5496                    TCGA-EJ-5497 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-5498                    TCGA-EJ-5499 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-5501                    TCGA-EJ-5502 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-5503                    TCGA-EJ-5504 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-5505                    TCGA-EJ-5506 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-5507                    TCGA-EJ-5508 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-5509                    TCGA-EJ-5510 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-5511                    TCGA-EJ-5512 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-5514                    TCGA-EJ-5515 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-5516                    TCGA-EJ-5517 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-5518                    TCGA-EJ-5519 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-5521                    TCGA-EJ-5522 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-5524                    TCGA-EJ-5525 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-5526                    TCGA-EJ-5527 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-5530                    TCGA-EJ-5531 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-5532                    TCGA-EJ-5542 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-7115                    TCGA-EJ-7125 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-7314                    TCGA-EJ-7315 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-7317                    TCGA-EJ-7321 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-7328                    TCGA-EJ-7330 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-7331                    TCGA-EJ-7781 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-7782                    TCGA-EJ-7784 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-7785                    TCGA-EJ-7786 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-7788                    TCGA-EJ-7791 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-7792                    TCGA-EJ-7793 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-7794                    TCGA-EJ-7797 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-8468                    TCGA-EJ-8469 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-8470                    TCGA-EJ-8474 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-A46B                    TCGA-EJ-A46D 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-A46E                    TCGA-EJ-A46F 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-A46G                    TCGA-EJ-A65E 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-EJ-A65M                    TCGA-FC-7708 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-FC-7961                    TCGA-FC-A4JI 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-FC-A5OB                    TCGA-G9-6329 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-G9-6338                    TCGA-G9-6342 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-G9-6343                    TCGA-G9-6351 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-G9-6353                    TCGA-G9-6356 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-G9-6361                    TCGA-G9-6362 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-G9-6363                    TCGA-G9-6364 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-G9-6365                    TCGA-G9-6366 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-G9-6367                    TCGA-G9-6370 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-G9-6371                    TCGA-G9-6373 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-G9-6377                    TCGA-G9-6378 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-G9-6384                    TCGA-G9-6494 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-G9-6496                    TCGA-G9-6499 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-G9-7510                    TCGA-G9-7521 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-G9-7522                    TCGA-G9-7523 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-G9-7525                    TCGA-H9-7775 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-HC-7077                    TCGA-HC-7079 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-HC-7081                    TCGA-HC-7210 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-HC-7211                    TCGA-HC-7212 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-HC-7213                    TCGA-HC-7232 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-HC-7233                    TCGA-HC-7736 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-HC-7740                    TCGA-HC-7744 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-HC-7748                    TCGA-HC-7817 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-HC-8264                    TCGA-HI-7168 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-HI-7169                    TCGA-HI-7170 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-HI-7171                    TCGA-J4-8198 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-J4-8200                    TCGA-J9-A52C 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-J9-A52E                    TCGA-KC-A4BL 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-KC-A4BN                    TCGA-KC-A4BO 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-KC-A4BR                    TCGA-KC-A4BV 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-KK-A59V                    TCGA-KK-A59X 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                   TCGA-KK-A59Y                    TCGA-KK-A59Z 
"AMP PEAK 20(XP22.2) WILD-TYPE" "AMP PEAK 20(XP22.2) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(XP22.2) MUTATED        9      2      4
  AMP PEAK 20(XP22.2) WILD-TYPE    115    110    130
D20V5, multiclass
        clus
vv       AMP PEAK 20(XP22.2) MUTATED AMP PEAK 20(XP22.2) WILD-TYPE
  CLUS_1                           9                           115
  CLUS_2                           2                           110
  CLUS_3                           4                           130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(XP22.2) MUTATED        7      1      7
  AMP PEAK 20(XP22.2) WILD-TYPE    131     96    128
D20V6, multiclass
        clus
vv       AMP PEAK 20(XP22.2) MUTATED AMP PEAK 20(XP22.2) WILD-TYPE
  CLUS_1                           7                           131
  CLUS_2                           1                            96
  CLUS_3                           7                           128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(XP22.2) MUTATED        2      2     10      3      3
  AMP PEAK 20(XP22.2) WILD-TYPE     86     38    113     70     88
D20V7, multiclass
        clus
vv       AMP PEAK 20(XP22.2) MUTATED AMP PEAK 20(XP22.2) WILD-TYPE
  CLUS_1                           2                            86
  CLUS_2                           2                            38
  CLUS_3                          10                           113
  CLUS_4                           3                            70
  CLUS_5                           3                            88
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(XP22.2) MUTATED        4      2     14
  AMP PEAK 20(XP22.2) WILD-TYPE    145     68    182
D20V8, multiclass
        clus
vv       AMP PEAK 20(XP22.2) MUTATED AMP PEAK 20(XP22.2) WILD-TYPE
  CLUS_1                           4                           145
  CLUS_2                           2                            68
  CLUS_3                          14                           182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(XP22.2) MUTATED       11      7      2
  AMP PEAK 20(XP22.2) WILD-TYPE    135    111    149
D20V9, multiclass
        clus
vv       AMP PEAK 20(XP22.2) MUTATED AMP PEAK 20(XP22.2) WILD-TYPE
  CLUS_1                          11                           135
  CLUS_2                           7                           111
  CLUS_3                           2                           149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(XP22.2) MUTATED        2      1     12      0      5
  AMP PEAK 20(XP22.2) WILD-TYPE     93     36    113     61     92
D20V10, multiclass
        clus
vv       AMP PEAK 20(XP22.2) MUTATED AMP PEAK 20(XP22.2) WILD-TYPE
  CLUS_1                           2                            93
  CLUS_2                           1                            36
  CLUS_3                          12                           113
  CLUS_4                           0                            61
  CLUS_5                           5                            92
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(XP22.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(XP22.11) MUTATED        3     14      0
  AMP PEAK 21(XP22.11) WILD-TYPE    232    102     68
D21V1, multiclass
        clus
vv       AMP PEAK 21(XP22.11) MUTATED AMP PEAK 21(XP22.11) WILD-TYPE
  CLUS_1                            3                            232
  CLUS_2                           14                            102
  CLUS_3                            0                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(XP22.11) MUTATED        4      3      5
  AMP PEAK 21(XP22.11) WILD-TYPE     92    103    124
D21V2, multiclass
        clus
vv       AMP PEAK 21(XP22.11) MUTATED AMP PEAK 21(XP22.11) WILD-TYPE
  CLUS_1                            4                             92
  CLUS_2                            3                            103
  CLUS_3                            5                            124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(XP22.11) MUTATED        0      0      2
  AMP PEAK 21(XP22.11) WILD-TYPE     41     59     60
D21V3, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 21(XP22.11) MUTATED"
clus
  AMP PEAK 21(XP22.11) MUTATED AMP PEAK 21(XP22.11) WILD-TYPE 
                             2                            160 
                    TCGA-CH-5737                     TCGA-CH-5738 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5748 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-CH-5750                     TCGA-CH-5751 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-CH-5752                     TCGA-CH-5753 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-CH-5754                     TCGA-CH-5761 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-CH-5762                     TCGA-CH-5763 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-CH-5764                     TCGA-CH-5765 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-CH-5766                     TCGA-CH-5767 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-CH-5768                     TCGA-CH-5769 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-CH-5771                     TCGA-CH-5772 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-CH-5788                     TCGA-CH-5789 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-CH-5790                     TCGA-CH-5791 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-CH-5792                     TCGA-CH-5794 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5494                     TCGA-EJ-5495 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5496                     TCGA-EJ-5497 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5498                     TCGA-EJ-5499 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5501                     TCGA-EJ-5502 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5503                     TCGA-EJ-5504 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5505                     TCGA-EJ-5506 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5507                     TCGA-EJ-5508 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5509                     TCGA-EJ-5510 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5511                     TCGA-EJ-5512 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5514                     TCGA-EJ-5515 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5516                     TCGA-EJ-5517 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5518                     TCGA-EJ-5519 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5521                     TCGA-EJ-5522 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5524                     TCGA-EJ-5525 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5526                     TCGA-EJ-5527 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5530                     TCGA-EJ-5531 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5532                     TCGA-EJ-5542 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7115                     TCGA-EJ-7125 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7317                     TCGA-EJ-7321 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7791                     TCGA-EJ-7792 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7793                     TCGA-EJ-7794 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7797                     TCGA-EJ-8468 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-8469                     TCGA-EJ-8470 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-8474                     TCGA-EJ-A46B 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-A46D                     TCGA-EJ-A46E 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-A46F                     TCGA-EJ-A65E 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-A65M                     TCGA-FC-7708 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-FC-7961                     TCGA-FC-A4JI 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-FC-A5OB                     TCGA-G9-6329 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-G9-6338                     TCGA-G9-6342 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-G9-6343                     TCGA-G9-6351 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-G9-6363                     TCGA-G9-6364 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-G9-6365                     TCGA-G9-6366 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-G9-6367                     TCGA-G9-6370 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-G9-6371                     TCGA-G9-6373 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-G9-6377                     TCGA-G9-6378 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-G9-6384                     TCGA-G9-6494 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-G9-6496                     TCGA-G9-6499 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-G9-7510                     TCGA-G9-7521 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-G9-7522                     TCGA-G9-7523 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-G9-7525                     TCGA-H9-7775 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-HC-7077                     TCGA-HC-7079 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-HC-7081                     TCGA-HC-7210 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-HC-7211                     TCGA-HC-7212 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-HC-7213                     TCGA-HC-7232 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-HC-7233                     TCGA-HC-7736 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-HC-7740                     TCGA-HC-7744 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-HC-7748                     TCGA-HC-7817 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-HC-8264                     TCGA-HI-7168 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-HI-7171                     TCGA-J4-8198 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-J4-8200                     TCGA-J9-A52C 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-J9-A52E                     TCGA-KC-A4BL 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-KC-A4BN                     TCGA-KC-A4BO 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-KC-A4BR                     TCGA-KC-A4BV 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-KK-A59V                     TCGA-KK-A59X 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-KK-A59Y                     TCGA-KK-A59Z 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(XP22.11) MUTATED        0      2      0
  AMP PEAK 21(XP22.11) WILD-TYPE     47     63     50
D21V4, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 21(XP22.11) MUTATED"
clus
  AMP PEAK 21(XP22.11) MUTATED AMP PEAK 21(XP22.11) WILD-TYPE 
                             2                            160 
                    TCGA-CH-5737                     TCGA-CH-5738 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5748 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-CH-5750                     TCGA-CH-5751 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-CH-5752                     TCGA-CH-5753 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-CH-5754                     TCGA-CH-5761 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-CH-5762                     TCGA-CH-5763 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-CH-5764                     TCGA-CH-5765 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-CH-5766                     TCGA-CH-5767 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-CH-5768                     TCGA-CH-5769 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-CH-5771                     TCGA-CH-5772 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-CH-5788                     TCGA-CH-5789 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-CH-5790                     TCGA-CH-5791 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-CH-5792                     TCGA-CH-5794 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5494                     TCGA-EJ-5495 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5496                     TCGA-EJ-5497 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5498                     TCGA-EJ-5499 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5501                     TCGA-EJ-5502 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5503                     TCGA-EJ-5504 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5505                     TCGA-EJ-5506 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5507                     TCGA-EJ-5508 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5509                     TCGA-EJ-5510 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5511                     TCGA-EJ-5512 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5514                     TCGA-EJ-5515 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5516                     TCGA-EJ-5517 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5518                     TCGA-EJ-5519 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5521                     TCGA-EJ-5522 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5524                     TCGA-EJ-5525 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5526                     TCGA-EJ-5527 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5530                     TCGA-EJ-5531 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5532                     TCGA-EJ-5542 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7115                     TCGA-EJ-7125 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7317                     TCGA-EJ-7321 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7791                     TCGA-EJ-7792 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7793                     TCGA-EJ-7794 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7797                     TCGA-EJ-8468 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-8469                     TCGA-EJ-8470 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-8474                     TCGA-EJ-A46B 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-A46D                     TCGA-EJ-A46E 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-A46F                     TCGA-EJ-A65E 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-EJ-A65M                     TCGA-FC-7708 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-FC-7961                     TCGA-FC-A4JI 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-FC-A5OB                     TCGA-G9-6329 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-G9-6338                     TCGA-G9-6342 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-G9-6343                     TCGA-G9-6351 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-G9-6363                     TCGA-G9-6364 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-G9-6365                     TCGA-G9-6366 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-G9-6367                     TCGA-G9-6370 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-G9-6371                     TCGA-G9-6373 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-G9-6377                     TCGA-G9-6378 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-G9-6384                     TCGA-G9-6494 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-G9-6496                     TCGA-G9-6499 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-G9-7510                     TCGA-G9-7521 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-G9-7522                     TCGA-G9-7523 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-G9-7525                     TCGA-H9-7775 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-HC-7077                     TCGA-HC-7079 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-HC-7081                     TCGA-HC-7210 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-HC-7211                     TCGA-HC-7212 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-HC-7213                     TCGA-HC-7232 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-HC-7233                     TCGA-HC-7736 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-HC-7740                     TCGA-HC-7744 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-HC-7748                     TCGA-HC-7817 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-HC-8264                     TCGA-HI-7168 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-HI-7169                     TCGA-HI-7170 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-HI-7171                     TCGA-J4-8198 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-J4-8200                     TCGA-J9-A52C 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-J9-A52E                     TCGA-KC-A4BL 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-KC-A4BN                     TCGA-KC-A4BO 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-KC-A4BR                     TCGA-KC-A4BV 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-KK-A59V                     TCGA-KK-A59X 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                    TCGA-KK-A59Y                     TCGA-KK-A59Z 
"AMP PEAK 21(XP22.11) WILD-TYPE" "AMP PEAK 21(XP22.11) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(XP22.11) MUTATED        8      2      3
  AMP PEAK 21(XP22.11) WILD-TYPE    116    110    131
D21V5, multiclass
        clus
vv       AMP PEAK 21(XP22.11) MUTATED AMP PEAK 21(XP22.11) WILD-TYPE
  CLUS_1                            8                            116
  CLUS_2                            2                            110
  CLUS_3                            3                            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(XP22.11) MUTATED        4      2      7
  AMP PEAK 21(XP22.11) WILD-TYPE    134     95    128
D21V6, multiclass
        clus
vv       AMP PEAK 21(XP22.11) MUTATED AMP PEAK 21(XP22.11) WILD-TYPE
  CLUS_1                            4                            134
  CLUS_2                            2                             95
  CLUS_3                            7                            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(XP22.11) MUTATED        1      2      7      3      4
  AMP PEAK 21(XP22.11) WILD-TYPE     87     38    116     70     87
D21V7, multiclass
        clus
vv       AMP PEAK 21(XP22.11) MUTATED AMP PEAK 21(XP22.11) WILD-TYPE
  CLUS_1                            1                             87
  CLUS_2                            2                             38
  CLUS_3                            7                            116
  CLUS_4                            3                             70
  CLUS_5                            4                             87
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(XP22.11) MUTATED        3      2     12
  AMP PEAK 21(XP22.11) WILD-TYPE    146     68    184
D21V8, multiclass
        clus
vv       AMP PEAK 21(XP22.11) MUTATED AMP PEAK 21(XP22.11) WILD-TYPE
  CLUS_1                            3                            146
  CLUS_2                            2                             68
  CLUS_3                           12                            184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(XP22.11) MUTATED       10      6      1
  AMP PEAK 21(XP22.11) WILD-TYPE    136    112    150
D21V9, multiclass
        clus
vv       AMP PEAK 21(XP22.11) MUTATED AMP PEAK 21(XP22.11) WILD-TYPE
  CLUS_1                           10                            136
  CLUS_2                            6                            112
  CLUS_3                            1                            150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(XP22.11) MUTATED        2      1      9      0      5
  AMP PEAK 21(XP22.11) WILD-TYPE     93     36    116     61     92
D21V10, multiclass
        clus
vv       AMP PEAK 21(XP22.11) MUTATED AMP PEAK 21(XP22.11) WILD-TYPE
  CLUS_1                            2                             93
  CLUS_2                            1                             36
  CLUS_3                            9                            116
  CLUS_4                            0                             61
  CLUS_5                            5                             92
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(XP22.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(XP22.11) MUTATED        3     14      0
  AMP PEAK 22(XP22.11) WILD-TYPE    232    102     68
D22V1, multiclass
        clus
vv       AMP PEAK 22(XP22.11) MUTATED AMP PEAK 22(XP22.11) WILD-TYPE
  CLUS_1                            3                            232
  CLUS_2                           14                            102
  CLUS_3                            0                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(XP22.11) MUTATED        4      4      4
  AMP PEAK 22(XP22.11) WILD-TYPE     92    102    125
D22V2, multiclass
        clus
vv       AMP PEAK 22(XP22.11) MUTATED AMP PEAK 22(XP22.11) WILD-TYPE
  CLUS_1                            4                             92
  CLUS_2                            4                            102
  CLUS_3                            4                            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(XP22.11) MUTATED        3      0      2
  AMP PEAK 22(XP22.11) WILD-TYPE     38     59     60
D22V3, multiclass
        clus
vv       AMP PEAK 22(XP22.11) MUTATED AMP PEAK 22(XP22.11) WILD-TYPE
  CLUS_1                            3                             38
  CLUS_2                            0                             59
  CLUS_3                            2                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(XP22.11) MUTATED        3      2      0
  AMP PEAK 22(XP22.11) WILD-TYPE     44     63     50
D22V4, multiclass
        clus
vv       AMP PEAK 22(XP22.11) MUTATED AMP PEAK 22(XP22.11) WILD-TYPE
  CLUS_1                            3                             44
  CLUS_2                            2                             63
  CLUS_3                            0                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(XP22.11) MUTATED        8      1      4
  AMP PEAK 22(XP22.11) WILD-TYPE    116    111    130
D22V5, multiclass
        clus
vv       AMP PEAK 22(XP22.11) MUTATED AMP PEAK 22(XP22.11) WILD-TYPE
  CLUS_1                            8                            116
  CLUS_2                            1                            111
  CLUS_3                            4                            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(XP22.11) MUTATED        6      1      6
  AMP PEAK 22(XP22.11) WILD-TYPE    132     96    129
D22V6, multiclass
        clus
vv       AMP PEAK 22(XP22.11) MUTATED AMP PEAK 22(XP22.11) WILD-TYPE
  CLUS_1                            6                            132
  CLUS_2                            1                             96
  CLUS_3                            6                            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(XP22.11) MUTATED        1      3      7      4      2
  AMP PEAK 22(XP22.11) WILD-TYPE     87     37    116     69     89
D22V7, multiclass
        clus
vv       AMP PEAK 22(XP22.11) MUTATED AMP PEAK 22(XP22.11) WILD-TYPE
  CLUS_1                            1                             87
  CLUS_2                            3                             37
  CLUS_3                            7                            116
  CLUS_4                            4                             69
  CLUS_5                            2                             89
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(XP22.11) MUTATED        3      4     10
  AMP PEAK 22(XP22.11) WILD-TYPE    146     66    186
D22V8, multiclass
        clus
vv       AMP PEAK 22(XP22.11) MUTATED AMP PEAK 22(XP22.11) WILD-TYPE
  CLUS_1                            3                            146
  CLUS_2                            4                             66
  CLUS_3                           10                            186
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(XP22.11) MUTATED       10      3      4
  AMP PEAK 22(XP22.11) WILD-TYPE    136    115    147
D22V9, multiclass
        clus
vv       AMP PEAK 22(XP22.11) MUTATED AMP PEAK 22(XP22.11) WILD-TYPE
  CLUS_1                           10                            136
  CLUS_2                            3                            115
  CLUS_3                            4                            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(XP22.11) MUTATED        1      3      9      1      3
  AMP PEAK 22(XP22.11) WILD-TYPE     94     34    116     60     94
D22V10, multiclass
        clus
vv       AMP PEAK 22(XP22.11) MUTATED AMP PEAK 22(XP22.11) WILD-TYPE
  CLUS_1                            1                             94
  CLUS_2                            3                             34
  CLUS_3                            9                            116
  CLUS_4                            1                             60
  CLUS_5                            3                             94
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(XP21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(XP21.1) MUTATED        3     14      0
  AMP PEAK 23(XP21.1) WILD-TYPE    232    102     68
D23V1, multiclass
        clus
vv       AMP PEAK 23(XP21.1) MUTATED AMP PEAK 23(XP21.1) WILD-TYPE
  CLUS_1                           3                           232
  CLUS_2                          14                           102
  CLUS_3                           0                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(XP21.1) MUTATED        4      1      6
  AMP PEAK 23(XP21.1) WILD-TYPE     92    105    123
D23V2, multiclass
        clus
vv       AMP PEAK 23(XP21.1) MUTATED AMP PEAK 23(XP21.1) WILD-TYPE
  CLUS_1                           4                            92
  CLUS_2                           1                           105
  CLUS_3                           6                           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(XP21.1) MUTATED        1      1      3
  AMP PEAK 23(XP21.1) WILD-TYPE     40     58     59
D23V3, multiclass
        clus
vv       AMP PEAK 23(XP21.1) MUTATED AMP PEAK 23(XP21.1) WILD-TYPE
  CLUS_1                           1                            40
  CLUS_2                           1                            58
  CLUS_3                           3                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(XP21.1) MUTATED        1      3      1
  AMP PEAK 23(XP21.1) WILD-TYPE     46     62     49
D23V4, multiclass
        clus
vv       AMP PEAK 23(XP21.1) MUTATED AMP PEAK 23(XP21.1) WILD-TYPE
  CLUS_1                           1                            46
  CLUS_2                           3                            62
  CLUS_3                           1                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(XP21.1) MUTATED        7      1      4
  AMP PEAK 23(XP21.1) WILD-TYPE    117    111    130
D23V5, multiclass
        clus
vv       AMP PEAK 23(XP21.1) MUTATED AMP PEAK 23(XP21.1) WILD-TYPE
  CLUS_1                           7                           117
  CLUS_2                           1                           111
  CLUS_3                           4                           130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(XP21.1) MUTATED        5      2      5
  AMP PEAK 23(XP21.1) WILD-TYPE    133     95    130
D23V6, multiclass
        clus
vv       AMP PEAK 23(XP21.1) MUTATED AMP PEAK 23(XP21.1) WILD-TYPE
  CLUS_1                           5                           133
  CLUS_2                           2                            95
  CLUS_3                           5                           130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(XP21.1) MUTATED        1      2      9      4      1
  AMP PEAK 23(XP21.1) WILD-TYPE     87     38    114     69     90
D23V7, multiclass
        clus
vv       AMP PEAK 23(XP21.1) MUTATED AMP PEAK 23(XP21.1) WILD-TYPE
  CLUS_1                           1                            87
  CLUS_2                           2                            38
  CLUS_3                           9                           114
  CLUS_4                           4                            69
  CLUS_5                           1                            90
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(XP21.1) MUTATED        4      3     10
  AMP PEAK 23(XP21.1) WILD-TYPE    145     67    186
D23V8, multiclass
        clus
vv       AMP PEAK 23(XP21.1) MUTATED AMP PEAK 23(XP21.1) WILD-TYPE
  CLUS_1                           4                           145
  CLUS_2                           3                            67
  CLUS_3                          10                           186
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(XP21.1) MUTATED       12      1      4
  AMP PEAK 23(XP21.1) WILD-TYPE    134    117    147
D23V9, multiclass
        clus
vv       AMP PEAK 23(XP21.1) MUTATED AMP PEAK 23(XP21.1) WILD-TYPE
  CLUS_1                          12                           134
  CLUS_2                           1                           117
  CLUS_3                           4                           147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(XP21.1) MUTATED        1      2     11      2      1
  AMP PEAK 23(XP21.1) WILD-TYPE     94     35    114     59     96
D23V10, multiclass
        clus
vv       AMP PEAK 23(XP21.1) MUTATED AMP PEAK 23(XP21.1) WILD-TYPE
  CLUS_1                           1                            94
  CLUS_2                           2                            35
  CLUS_3                          11                           114
  CLUS_4                           2                            59
  CLUS_5                           1                            96
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(XQ21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(XQ21.1) MUTATED        2      9      1
  AMP PEAK 24(XQ21.1) WILD-TYPE    233    107     67
D24V1, multiclass
        clus
vv       AMP PEAK 24(XQ21.1) MUTATED AMP PEAK 24(XQ21.1) WILD-TYPE
  CLUS_1                           2                           233
  CLUS_2                           9                           107
  CLUS_3                           1                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(XQ21.1) MUTATED        4      1      4
  AMP PEAK 24(XQ21.1) WILD-TYPE     92    105    125
D24V2, multiclass
        clus
vv       AMP PEAK 24(XQ21.1) MUTATED AMP PEAK 24(XQ21.1) WILD-TYPE
  CLUS_1                           4                            92
  CLUS_2                           1                           105
  CLUS_3                           4                           125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(XQ21.1) MUTATED        2      1      4
  AMP PEAK 24(XQ21.1) WILD-TYPE     39     58     58
D24V3, multiclass
        clus
vv       AMP PEAK 24(XQ21.1) MUTATED AMP PEAK 24(XQ21.1) WILD-TYPE
  CLUS_1                           2                            39
  CLUS_2                           1                            58
  CLUS_3                           4                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(XQ21.1) MUTATED        1      4      2
  AMP PEAK 24(XQ21.1) WILD-TYPE     46     61     48
D24V4, multiclass
        clus
vv       AMP PEAK 24(XQ21.1) MUTATED AMP PEAK 24(XQ21.1) WILD-TYPE
  CLUS_1                           1                            46
  CLUS_2                           4                            61
  CLUS_3                           2                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(XQ21.1) MUTATED        5      0      4
  AMP PEAK 24(XQ21.1) WILD-TYPE    119    112    130
D24V5, multiclass
        clus
vv       AMP PEAK 24(XQ21.1) MUTATED AMP PEAK 24(XQ21.1) WILD-TYPE
  CLUS_1                           5                           119
  CLUS_2                           0                           112
  CLUS_3                           4                           130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(XQ21.1) MUTATED        5      1      3
  AMP PEAK 24(XQ21.1) WILD-TYPE    133     96    132
D24V6, multiclass
        clus
vv       AMP PEAK 24(XQ21.1) MUTATED AMP PEAK 24(XQ21.1) WILD-TYPE
  CLUS_1                           5                           133
  CLUS_2                           1                            96
  CLUS_3                           3                           132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(XQ21.1) MUTATED        0      1      3      6      2
  AMP PEAK 24(XQ21.1) WILD-TYPE     88     39    120     67     89
D24V7, multiclass
        clus
vv       AMP PEAK 24(XQ21.1) MUTATED AMP PEAK 24(XQ21.1) WILD-TYPE
  CLUS_1                           0                            88
  CLUS_2                           1                            39
  CLUS_3                           3                           120
  CLUS_4                           6                            67
  CLUS_5                           2                            89
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(XQ21.1) MUTATED        3      3      6
  AMP PEAK 24(XQ21.1) WILD-TYPE    146     67    190
D24V8, multiclass
        clus
vv       AMP PEAK 24(XQ21.1) MUTATED AMP PEAK 24(XQ21.1) WILD-TYPE
  CLUS_1                           3                           146
  CLUS_2                           3                            67
  CLUS_3                           6                           190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(XQ21.1) MUTATED        6      2      4
  AMP PEAK 24(XQ21.1) WILD-TYPE    140    116    147
D24V9, multiclass
        clus
vv       AMP PEAK 24(XQ21.1) MUTATED AMP PEAK 24(XQ21.1) WILD-TYPE
  CLUS_1                           6                           140
  CLUS_2                           2                           116
  CLUS_3                           4                           147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(XQ21.1) MUTATED        0      2      4      4      2
  AMP PEAK 24(XQ21.1) WILD-TYPE     95     35    121     57     95
D24V10, multiclass
        clus
vv       AMP PEAK 24(XQ21.1) MUTATED AMP PEAK 24(XQ21.1) WILD-TYPE
  CLUS_1                           0                            95
  CLUS_2                           2                            35
  CLUS_3                           4                           121
  CLUS_4                           4                            57
  CLUS_5                           2                            95
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(XQ21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(XQ21.1) MUTATED        1      7      2
  AMP PEAK 25(XQ21.1) WILD-TYPE    234    109     66
D25V1, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                           1                           234
  CLUS_2                           7                           109
  CLUS_3                           2                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(XQ21.1) MUTATED        6      1      0
  AMP PEAK 25(XQ21.1) WILD-TYPE     90    105    129
D25V2, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                           6                            90
  CLUS_2                           1                           105
  CLUS_3                           0                           129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(XQ21.1) MUTATED        0      1      3
  AMP PEAK 25(XQ21.1) WILD-TYPE     41     58     59
D25V3, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                           0                            41
  CLUS_2                           1                            58
  CLUS_3                           3                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(XQ21.1) MUTATED        1      2      1
  AMP PEAK 25(XQ21.1) WILD-TYPE     46     63     49
D25V4, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                           1                            46
  CLUS_2                           2                            63
  CLUS_3                           1                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(XQ21.1) MUTATED        4      2      1
  AMP PEAK 25(XQ21.1) WILD-TYPE    120    110    133
D25V5, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                           4                           120
  CLUS_2                           2                           110
  CLUS_3                           1                           133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(XQ21.1) MUTATED        5      1      1
  AMP PEAK 25(XQ21.1) WILD-TYPE    133     96    134
D25V6, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                           5                           133
  CLUS_2                           1                            96
  CLUS_3                           1                           134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(XQ21.1) MUTATED        1      1      3      2      3
  AMP PEAK 25(XQ21.1) WILD-TYPE     87     39    120     71     88
D25V7, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                           1                            87
  CLUS_2                           1                            39
  CLUS_3                           3                           120
  CLUS_4                           2                            71
  CLUS_5                           3                            88
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(XQ21.1) MUTATED        2      2      6
  AMP PEAK 25(XQ21.1) WILD-TYPE    147     68    190
D25V8, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                           2                           147
  CLUS_2                           2                            68
  CLUS_3                           6                           190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(XQ21.1) MUTATED        6      3      1
  AMP PEAK 25(XQ21.1) WILD-TYPE    140    115    150
D25V9, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                           6                           140
  CLUS_2                           3                           115
  CLUS_3                           1                           150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(XQ21.1) MUTATED        0      1      4      2      3
  AMP PEAK 25(XQ21.1) WILD-TYPE     95     36    121     59     94
D25V10, multiclass
        clus
vv       AMP PEAK 25(XQ21.1) MUTATED AMP PEAK 25(XQ21.1) WILD-TYPE
  CLUS_1                           0                            95
  CLUS_2                           1                            36
  CLUS_3                           4                           121
  CLUS_4                           2                            59
  CLUS_5                           3                            94
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = AMP PEAK 26(XQ21.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(XQ21.31) MUTATED        1     10      0
  AMP PEAK 26(XQ21.31) WILD-TYPE    234    106     68
D26V1, multiclass
        clus
vv       AMP PEAK 26(XQ21.31) MUTATED AMP PEAK 26(XQ21.31) WILD-TYPE
  CLUS_1                            1                            234
  CLUS_2                           10                            106
  CLUS_3                            0                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(XQ21.31) MUTATED        4      1      2
  AMP PEAK 26(XQ21.31) WILD-TYPE     92    105    127
D26V2, multiclass
        clus
vv       AMP PEAK 26(XQ21.31) MUTATED AMP PEAK 26(XQ21.31) WILD-TYPE
  CLUS_1                            4                             92
  CLUS_2                            1                            105
  CLUS_3                            2                            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(XQ21.31) MUTATED        1      1      3
  AMP PEAK 26(XQ21.31) WILD-TYPE     40     58     59
D26V3, multiclass
        clus
vv       AMP PEAK 26(XQ21.31) MUTATED AMP PEAK 26(XQ21.31) WILD-TYPE
  CLUS_1                            1                             40
  CLUS_2                            1                             58
  CLUS_3                            3                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(XQ21.31) MUTATED        1      3      1
  AMP PEAK 26(XQ21.31) WILD-TYPE     46     62     49
D26V4, multiclass
        clus
vv       AMP PEAK 26(XQ21.31) MUTATED AMP PEAK 26(XQ21.31) WILD-TYPE
  CLUS_1                            1                             46
  CLUS_2                            3                             62
  CLUS_3                            1                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(XQ21.31) MUTATED        5      0      2
  AMP PEAK 26(XQ21.31) WILD-TYPE    119    112    132
D26V5, multiclass
        clus
vv       AMP PEAK 26(XQ21.31) MUTATED AMP PEAK 26(XQ21.31) WILD-TYPE
  CLUS_1                            5                            119
  CLUS_2                            0                            112
  CLUS_3                            2                            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(XQ21.31) MUTATED        4      0      3
  AMP PEAK 26(XQ21.31) WILD-TYPE    134     97    132
D26V6, multiclass
        clus
vv       AMP PEAK 26(XQ21.31) MUTATED AMP PEAK 26(XQ21.31) WILD-TYPE
  CLUS_1                            4                            134
  CLUS_2                            0                             97
  CLUS_3                            3                            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(XQ21.31) MUTATED        0      2      3      4      2
  AMP PEAK 26(XQ21.31) WILD-TYPE     88     38    120     69     89
D26V7, multiclass
        clus
vv       AMP PEAK 26(XQ21.31) MUTATED AMP PEAK 26(XQ21.31) WILD-TYPE
  CLUS_1                            0                             88
  CLUS_2                            2                             38
  CLUS_3                            3                            120
  CLUS_4                            4                             69
  CLUS_5                            2                             89
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(XQ21.31) MUTATED        1      2      8
  AMP PEAK 26(XQ21.31) WILD-TYPE    148     68    188
D26V8, multiclass
        clus
vv       AMP PEAK 26(XQ21.31) MUTATED AMP PEAK 26(XQ21.31) WILD-TYPE
  CLUS_1                            1                            148
  CLUS_2                            2                             68
  CLUS_3                            8                            188
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(XQ21.31) MUTATED        6      3      2
  AMP PEAK 26(XQ21.31) WILD-TYPE    140    115    149
D26V9, multiclass
        clus
vv       AMP PEAK 26(XQ21.31) MUTATED AMP PEAK 26(XQ21.31) WILD-TYPE
  CLUS_1                            6                            140
  CLUS_2                            3                            115
  CLUS_3                            2                            149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(XQ21.31) MUTATED        0      2      6      1      2
  AMP PEAK 26(XQ21.31) WILD-TYPE     95     35    119     60     95
D26V10, multiclass
        clus
vv       AMP PEAK 26(XQ21.31) MUTATED AMP PEAK 26(XQ21.31) WILD-TYPE
  CLUS_1                            0                             95
  CLUS_2                            2                             35
  CLUS_3                            6                            119
  CLUS_4                            1                             60
  CLUS_5                            2                             95
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = AMP PEAK 27(XQ25) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(XQ25) MUTATED        2      8      0
  AMP PEAK 27(XQ25) WILD-TYPE    233    108     68
D27V1, multiclass
        clus
vv       AMP PEAK 27(XQ25) MUTATED AMP PEAK 27(XQ25) WILD-TYPE
  CLUS_1                         2                         233
  CLUS_2                         8                         108
  CLUS_3                         0                          68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(XQ25) MUTATED        4      2      0
  AMP PEAK 27(XQ25) WILD-TYPE     92    104    129
D27V2, multiclass
        clus
vv       AMP PEAK 27(XQ25) MUTATED AMP PEAK 27(XQ25) WILD-TYPE
  CLUS_1                         4                          92
  CLUS_2                         2                         104
  CLUS_3                         0                         129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(XQ25) MUTATED        0      2      1
  AMP PEAK 27(XQ25) WILD-TYPE     41     57     61
D27V3, multiclass
        clus
vv       AMP PEAK 27(XQ25) MUTATED AMP PEAK 27(XQ25) WILD-TYPE
  CLUS_1                         0                          41
  CLUS_2                         2                          57
  CLUS_3                         1                          61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(XQ25) MUTATED        0      1      2
  AMP PEAK 27(XQ25) WILD-TYPE     47     64     48
D27V4, multiclass
        clus
vv       AMP PEAK 27(XQ25) MUTATED AMP PEAK 27(XQ25) WILD-TYPE
  CLUS_1                         0                          47
  CLUS_2                         1                          64
  CLUS_3                         2                          48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(XQ25) MUTATED        4      2      0
  AMP PEAK 27(XQ25) WILD-TYPE    120    110    134
D27V5, multiclass
        clus
vv       AMP PEAK 27(XQ25) MUTATED AMP PEAK 27(XQ25) WILD-TYPE
  CLUS_1                         4                         120
  CLUS_2                         2                         110
  CLUS_3                         0                         134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(XQ25) MUTATED        4      2      0
  AMP PEAK 27(XQ25) WILD-TYPE    134     95    135
D27V6, multiclass
        clus
vv       AMP PEAK 27(XQ25) MUTATED AMP PEAK 27(XQ25) WILD-TYPE
  CLUS_1                         4                         134
  CLUS_2                         2                          95
  CLUS_3                         0                         135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(XQ25) MUTATED        0      1      4      1      4
  AMP PEAK 27(XQ25) WILD-TYPE     88     39    119     72     87
D27V7, multiclass
        clus
vv       AMP PEAK 27(XQ25) MUTATED AMP PEAK 27(XQ25) WILD-TYPE
  CLUS_1                         0                          88
  CLUS_2                         1                          39
  CLUS_3                         4                         119
  CLUS_4                         1                          72
  CLUS_5                         4                          87
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(XQ25) MUTATED        0      2      8
  AMP PEAK 27(XQ25) WILD-TYPE    149     68    188
D27V8, multiclass
        clus
vv       AMP PEAK 27(XQ25) MUTATED AMP PEAK 27(XQ25) WILD-TYPE
  CLUS_1                         0                         149
  CLUS_2                         2                          68
  CLUS_3                         8                         188
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(XQ25) MUTATED        6      4      0
  AMP PEAK 27(XQ25) WILD-TYPE    140    114    151
D27V9, multiclass
        clus
vv       AMP PEAK 27(XQ25) MUTATED AMP PEAK 27(XQ25) WILD-TYPE
  CLUS_1                         6                         140
  CLUS_2                         4                         114
  CLUS_3                         0                         151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(XQ25) MUTATED        0      1      5      0      4
  AMP PEAK 27(XQ25) WILD-TYPE     95     36    120     61     93
D27V10, multiclass
        clus
vv       AMP PEAK 27(XQ25) MUTATED AMP PEAK 27(XQ25) WILD-TYPE
  CLUS_1                         0                          95
  CLUS_2                         1                          36
  CLUS_3                         5                         120
  CLUS_4                         0                          61
  CLUS_5                         4                          93
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = AMP PEAK 28(XQ25) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(XQ25) MUTATED        2      9      2
  AMP PEAK 28(XQ25) WILD-TYPE    233    107     66
D28V1, multiclass
        clus
vv       AMP PEAK 28(XQ25) MUTATED AMP PEAK 28(XQ25) WILD-TYPE
  CLUS_1                         2                         233
  CLUS_2                         9                         107
  CLUS_3                         2                          66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(XQ25) MUTATED        5      1      3
  AMP PEAK 28(XQ25) WILD-TYPE     91    105    126
D28V2, multiclass
        clus
vv       AMP PEAK 28(XQ25) MUTATED AMP PEAK 28(XQ25) WILD-TYPE
  CLUS_1                         5                          91
  CLUS_2                         1                         105
  CLUS_3                         3                         126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(XQ25) MUTATED        1      2      3
  AMP PEAK 28(XQ25) WILD-TYPE     40     57     59
D28V3, multiclass
        clus
vv       AMP PEAK 28(XQ25) MUTATED AMP PEAK 28(XQ25) WILD-TYPE
  CLUS_1                         1                          40
  CLUS_2                         2                          57
  CLUS_3                         3                          59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(XQ25) MUTATED        1      3      2
  AMP PEAK 28(XQ25) WILD-TYPE     46     62     48
D28V4, multiclass
        clus
vv       AMP PEAK 28(XQ25) MUTATED AMP PEAK 28(XQ25) WILD-TYPE
  CLUS_1                         1                          46
  CLUS_2                         3                          62
  CLUS_3                         2                          48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(XQ25) MUTATED        7      2      1
  AMP PEAK 28(XQ25) WILD-TYPE    117    110    133
D28V5, multiclass
        clus
vv       AMP PEAK 28(XQ25) MUTATED AMP PEAK 28(XQ25) WILD-TYPE
  CLUS_1                         7                         117
  CLUS_2                         2                         110
  CLUS_3                         1                         133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(XQ25) MUTATED        6      3      1
  AMP PEAK 28(XQ25) WILD-TYPE    132     94    134
D28V6, multiclass
        clus
vv       AMP PEAK 28(XQ25) MUTATED AMP PEAK 28(XQ25) WILD-TYPE
  CLUS_1                         6                         132
  CLUS_2                         3                          94
  CLUS_3                         1                         134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(XQ25) MUTATED        1      2      4      4      2
  AMP PEAK 28(XQ25) WILD-TYPE     87     38    119     69     89
D28V7, multiclass
        clus
vv       AMP PEAK 28(XQ25) MUTATED AMP PEAK 28(XQ25) WILD-TYPE
  CLUS_1                         1                          87
  CLUS_2                         2                          38
  CLUS_3                         4                         119
  CLUS_4                         4                          69
  CLUS_5                         2                          89
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(XQ25) MUTATED        4      3      6
  AMP PEAK 28(XQ25) WILD-TYPE    145     67    190
D28V8, multiclass
        clus
vv       AMP PEAK 28(XQ25) MUTATED AMP PEAK 28(XQ25) WILD-TYPE
  CLUS_1                         4                         145
  CLUS_2                         3                          67
  CLUS_3                         6                         190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(XQ25) MUTATED        6      3      4
  AMP PEAK 28(XQ25) WILD-TYPE    140    115    147
D28V9, multiclass
        clus
vv       AMP PEAK 28(XQ25) MUTATED AMP PEAK 28(XQ25) WILD-TYPE
  CLUS_1                         6                         140
  CLUS_2                         3                         115
  CLUS_3                         4                         147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(XQ25) MUTATED        0      2      5      4      2
  AMP PEAK 28(XQ25) WILD-TYPE     95     35    120     57     95
D28V10, multiclass
        clus
vv       AMP PEAK 28(XQ25) MUTATED AMP PEAK 28(XQ25) WILD-TYPE
  CLUS_1                         0                          95
  CLUS_2                         2                          35
  CLUS_3                         5                         120
  CLUS_4                         4                          57
  CLUS_5                         2                          95
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = AMP PEAK 29(XQ27.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(XQ27.1) MUTATED        2      8      4
  AMP PEAK 29(XQ27.1) WILD-TYPE    233    108     64
D29V1, multiclass
        clus
vv       AMP PEAK 29(XQ27.1) MUTATED AMP PEAK 29(XQ27.1) WILD-TYPE
  CLUS_1                           2                           233
  CLUS_2                           8                           108
  CLUS_3                           4                            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(XQ27.1) MUTATED        6      1      4
  AMP PEAK 29(XQ27.1) WILD-TYPE     90    105    125
D29V2, multiclass
        clus
vv       AMP PEAK 29(XQ27.1) MUTATED AMP PEAK 29(XQ27.1) WILD-TYPE
  CLUS_1                           6                            90
  CLUS_2                           1                           105
  CLUS_3                           4                           125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(XQ27.1) MUTATED        1      5      2
  AMP PEAK 29(XQ27.1) WILD-TYPE     40     54     60
D29V3, multiclass
        clus
vv       AMP PEAK 29(XQ27.1) MUTATED AMP PEAK 29(XQ27.1) WILD-TYPE
  CLUS_1                           1                            40
  CLUS_2                           5                            54
  CLUS_3                           2                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(XQ27.1) MUTATED        1      2      5
  AMP PEAK 29(XQ27.1) WILD-TYPE     46     63     45
D29V4, multiclass
        clus
vv       AMP PEAK 29(XQ27.1) MUTATED AMP PEAK 29(XQ27.1) WILD-TYPE
  CLUS_1                           1                            46
  CLUS_2                           2                            63
  CLUS_3                           5                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(XQ27.1) MUTATED        6      3      3
  AMP PEAK 29(XQ27.1) WILD-TYPE    118    109    131
D29V5, multiclass
        clus
vv       AMP PEAK 29(XQ27.1) MUTATED AMP PEAK 29(XQ27.1) WILD-TYPE
  CLUS_1                           6                           118
  CLUS_2                           3                           109
  CLUS_3                           3                           131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(XQ27.1) MUTATED        5      3      4
  AMP PEAK 29(XQ27.1) WILD-TYPE    133     94    131
D29V6, multiclass
        clus
vv       AMP PEAK 29(XQ27.1) MUTATED AMP PEAK 29(XQ27.1) WILD-TYPE
  CLUS_1                           5                           133
  CLUS_2                           3                            94
  CLUS_3                           4                           131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(XQ27.1) MUTATED        0      2      4      0      8
  AMP PEAK 29(XQ27.1) WILD-TYPE     88     38    119     73     83
D29V7, multiclass
        clus
vv       AMP PEAK 29(XQ27.1) MUTATED AMP PEAK 29(XQ27.1) WILD-TYPE
  CLUS_1                           0                            88
  CLUS_2                           2                            38
  CLUS_3                           4                           119
  CLUS_4                           0                            73
  CLUS_5                           8                            83
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(XQ27.1) MUTATED        2      5      7
  AMP PEAK 29(XQ27.1) WILD-TYPE    147     65    189
D29V8, multiclass
        clus
vv       AMP PEAK 29(XQ27.1) MUTATED AMP PEAK 29(XQ27.1) WILD-TYPE
  CLUS_1                           2                           147
  CLUS_2                           5                            65
  CLUS_3                           7                           189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(XQ27.1) MUTATED        5      9      0
  AMP PEAK 29(XQ27.1) WILD-TYPE    141    109    151
D29V9, multiclass
        clus
vv       AMP PEAK 29(XQ27.1) MUTATED AMP PEAK 29(XQ27.1) WILD-TYPE
  CLUS_1                           5                           141
  CLUS_2                           9                           109
  CLUS_3                           0                           151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(XQ27.1) MUTATED        0      1      4      0      9
  AMP PEAK 29(XQ27.1) WILD-TYPE     95     36    121     61     88
D29V10, multiclass
        clus
vv       AMP PEAK 29(XQ27.1) MUTATED AMP PEAK 29(XQ27.1) WILD-TYPE
  CLUS_1                           0                            95
  CLUS_2                           1                            36
  CLUS_3                           4                           121
  CLUS_4                           0                            61
  CLUS_5                           9                            88
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  1(1P31.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P31.3) MUTATED       16     29      3
  DEL PEAK  1(1P31.3) WILD-TYPE    219     87     65
D30V1, multiclass
        clus
vv       DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          16                           219
  CLUS_2                          29                            87
  CLUS_3                           3                            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P31.3) MUTATED       10      2     26
  DEL PEAK  1(1P31.3) WILD-TYPE     86    104    103
D30V2, multiclass
        clus
vv       DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          10                            86
  CLUS_2                           2                           104
  CLUS_3                          26                           103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P31.3) MUTATED        5      5     11
  DEL PEAK  1(1P31.3) WILD-TYPE     36     54     51
D30V3, multiclass
        clus
vv       DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                           5                            36
  CLUS_2                           5                            54
  CLUS_3                          11                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P31.3) MUTATED        5     11      5
  DEL PEAK  1(1P31.3) WILD-TYPE     42     54     45
D30V4, multiclass
        clus
vv       DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                           5                            42
  CLUS_2                          11                            54
  CLUS_3                           5                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P31.3) MUTATED       12      3     27
  DEL PEAK  1(1P31.3) WILD-TYPE    112    109    107
D30V5, multiclass
        clus
vv       DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          12                           112
  CLUS_2                           3                           109
  CLUS_3                          27                           107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P31.3) MUTATED       11      2     29
  DEL PEAK  1(1P31.3) WILD-TYPE    127     95    106
D30V6, multiclass
        clus
vv       DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          11                           127
  CLUS_2                           2                            95
  CLUS_3                          29                           106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P31.3) MUTATED        1      2     19     11     14
  DEL PEAK  1(1P31.3) WILD-TYPE     87     38    104     62     77
D30V7, multiclass
        clus
vv       DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                           1                            87
  CLUS_2                           2                            38
  CLUS_3                          19                           104
  CLUS_4                          11                            62
  CLUS_5                          14                            77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P31.3) MUTATED        8      6     33
  DEL PEAK  1(1P31.3) WILD-TYPE    141     64    163
D30V8, multiclass
        clus
vv       DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                           8                           141
  CLUS_2                           6                            64
  CLUS_3                          33                           163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P31.3) MUTATED       20     19      8
  DEL PEAK  1(1P31.3) WILD-TYPE    126     99    143
D30V9, multiclass
        clus
vv       DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                          20                           126
  CLUS_2                          19                            99
  CLUS_3                           8                           143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P31.3) MUTATED        4      2     20      7     14
  DEL PEAK  1(1P31.3) WILD-TYPE     91     35    105     54     83
D30V10, multiclass
        clus
vv       DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                           4                            91
  CLUS_2                           2                            35
  CLUS_3                          20                           105
  CLUS_4                           7                            54
  CLUS_5                          14                            83
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK  2(1P22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P22.1) MUTATED        9     32      7
  DEL PEAK  2(1P22.1) WILD-TYPE    226     84     61
D31V1, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                           9                           226
  CLUS_2                          32                            84
  CLUS_3                           7                            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P22.1) MUTATED       11      3     15
  DEL PEAK  2(1P22.1) WILD-TYPE     85    103    114
D31V2, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          11                            85
  CLUS_2                           3                           103
  CLUS_3                          15                           114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P22.1) MUTATED        2      2      7
  DEL PEAK  2(1P22.1) WILD-TYPE     39     57     55
D31V3, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                           2                            39
  CLUS_2                           2                            57
  CLUS_3                           7                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P22.1) MUTATED        2      8      1
  DEL PEAK  2(1P22.1) WILD-TYPE     45     57     49
D31V4, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                           2                            45
  CLUS_2                           8                            57
  CLUS_3                           1                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P22.1) MUTATED       16      5     19
  DEL PEAK  2(1P22.1) WILD-TYPE    108    107    115
D31V5, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          16                           108
  CLUS_2                           5                           107
  CLUS_3                          19                           115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P22.1) MUTATED       17      3     20
  DEL PEAK  2(1P22.1) WILD-TYPE    121     94    115
D31V6, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          17                           121
  CLUS_2                           3                            94
  CLUS_3                          20                           115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P22.1) MUTATED        3      2     23      6     13
  DEL PEAK  2(1P22.1) WILD-TYPE     85     38    100     67     78
D31V7, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                           3                            85
  CLUS_2                           2                            38
  CLUS_3                          23                           100
  CLUS_4                           6                            67
  CLUS_5                          13                            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P22.1) MUTATED       11      4     32
  DEL PEAK  2(1P22.1) WILD-TYPE    138     66    164
D31V8, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          11                           138
  CLUS_2                           4                            66
  CLUS_3                          32                           164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P22.1) MUTATED       24     16      7
  DEL PEAK  2(1P22.1) WILD-TYPE    122    102    144
D31V9, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          24                           122
  CLUS_2                          16                           102
  CLUS_3                           7                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P22.1) MUTATED        7      3     23      3     11
  DEL PEAK  2(1P22.1) WILD-TYPE     88     34    102     58     86
D31V10, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                           7                            88
  CLUS_2                           3                            34
  CLUS_3                          23                           102
  CLUS_4                           3                            58
  CLUS_5                          11                            86
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK  3(1Q42.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q42.2) MUTATED        8     18     13
  DEL PEAK  3(1Q42.2) WILD-TYPE    227     98     55
D32V1, multiclass
        clus
vv       DEL PEAK  3(1Q42.2) MUTATED DEL PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                           8                           227
  CLUS_2                          18                            98
  CLUS_3                          13                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q42.2) MUTATED       17      3      6
  DEL PEAK  3(1Q42.2) WILD-TYPE     79    103    123
D32V2, multiclass
        clus
vv       DEL PEAK  3(1Q42.2) MUTATED DEL PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                          17                            79
  CLUS_2                           3                           103
  CLUS_3                           6                           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q42.2) MUTATED        4      4      5
  DEL PEAK  3(1Q42.2) WILD-TYPE     37     55     57
D32V3, multiclass
        clus
vv       DEL PEAK  3(1Q42.2) MUTATED DEL PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                           4                            37
  CLUS_2                           4                            55
  CLUS_3                           5                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q42.2) MUTATED        6      6      1
  DEL PEAK  3(1Q42.2) WILD-TYPE     41     59     49
D32V4, multiclass
        clus
vv       DEL PEAK  3(1Q42.2) MUTATED DEL PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                           6                            41
  CLUS_2                           6                            59
  CLUS_3                           1                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q42.2) MUTATED       12      9     11
  DEL PEAK  3(1Q42.2) WILD-TYPE    112    103    123
D32V5, multiclass
        clus
vv       DEL PEAK  3(1Q42.2) MUTATED DEL PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                          12                           112
  CLUS_2                           9                           103
  CLUS_3                          11                           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q42.2) MUTATED       18      3     11
  DEL PEAK  3(1Q42.2) WILD-TYPE    120     94    124
D32V6, multiclass
        clus
vv       DEL PEAK  3(1Q42.2) MUTATED DEL PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                          18                           120
  CLUS_2                           3                            94
  CLUS_3                          11                           124
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1Q42.2) MUTATED        3      5     14      8      9
  DEL PEAK  3(1Q42.2) WILD-TYPE     85     35    109     65     82
D32V7, multiclass
        clus
vv       DEL PEAK  3(1Q42.2) MUTATED DEL PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                           3                            85
  CLUS_2                           5                            35
  CLUS_3                          14                           109
  CLUS_4                           8                            65
  CLUS_5                           9                            82
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q42.2) MUTATED       10      6     23
  DEL PEAK  3(1Q42.2) WILD-TYPE    139     64    173
D32V8, multiclass
        clus
vv       DEL PEAK  3(1Q42.2) MUTATED DEL PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                          10                           139
  CLUS_2                           6                            64
  CLUS_3                          23                           173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q42.2) MUTATED       19     12      8
  DEL PEAK  3(1Q42.2) WILD-TYPE    127    106    143
D32V9, multiclass
        clus
vv       DEL PEAK  3(1Q42.2) MUTATED DEL PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                          19                           127
  CLUS_2                          12                           106
  CLUS_3                           8                           143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1Q42.2) MUTATED        7      5     12      5     10
  DEL PEAK  3(1Q42.2) WILD-TYPE     88     32    113     56     87
D32V10, multiclass
        clus
vv       DEL PEAK  3(1Q42.2) MUTATED DEL PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                           7                            88
  CLUS_2                           5                            32
  CLUS_3                          12                           113
  CLUS_4                           5                            56
  CLUS_5                          10                            87
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK  4(2P22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2P22.1) MUTATED       13     16      5
  DEL PEAK  4(2P22.1) WILD-TYPE    222    100     63
D33V1, multiclass
        clus
vv       DEL PEAK  4(2P22.1) MUTATED DEL PEAK  4(2P22.1) WILD-TYPE
  CLUS_1                          13                           222
  CLUS_2                          16                           100
  CLUS_3                           5                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2P22.1) MUTATED        7      3     14
  DEL PEAK  4(2P22.1) WILD-TYPE     89    103    115
D33V2, multiclass
        clus
vv       DEL PEAK  4(2P22.1) MUTATED DEL PEAK  4(2P22.1) WILD-TYPE
  CLUS_1                           7                            89
  CLUS_2                           3                           103
  CLUS_3                          14                           115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2P22.1) MUTATED        3      0      6
  DEL PEAK  4(2P22.1) WILD-TYPE     38     59     56
D33V3, multiclass
        clus
vv       DEL PEAK  4(2P22.1) MUTATED DEL PEAK  4(2P22.1) WILD-TYPE
  CLUS_1                           3                            38
  CLUS_2                           0                            59
  CLUS_3                           6                            56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2P22.1) MUTATED        3      6      0
  DEL PEAK  4(2P22.1) WILD-TYPE     44     59     50
D33V4, multiclass
        clus
vv       DEL PEAK  4(2P22.1) MUTATED DEL PEAK  4(2P22.1) WILD-TYPE
  CLUS_1                           3                            44
  CLUS_2                           6                            59
  CLUS_3                           0                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2P22.1) MUTATED        9      2     15
  DEL PEAK  4(2P22.1) WILD-TYPE    115    110    119
D33V5, multiclass
        clus
vv       DEL PEAK  4(2P22.1) MUTATED DEL PEAK  4(2P22.1) WILD-TYPE
  CLUS_1                           9                           115
  CLUS_2                           2                           110
  CLUS_3                          15                           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2P22.1) MUTATED        5      3     18
  DEL PEAK  4(2P22.1) WILD-TYPE    133     94    117
D33V6, multiclass
        clus
vv       DEL PEAK  4(2P22.1) MUTATED DEL PEAK  4(2P22.1) WILD-TYPE
  CLUS_1                           5                           133
  CLUS_2                           3                            94
  CLUS_3                          18                           117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2P22.1) MUTATED        4      1     16      6      4
  DEL PEAK  4(2P22.1) WILD-TYPE     84     39    107     67     87
D33V7, multiclass
        clus
vv       DEL PEAK  4(2P22.1) MUTATED DEL PEAK  4(2P22.1) WILD-TYPE
  CLUS_1                           4                            84
  CLUS_2                           1                            39
  CLUS_3                          16                           107
  CLUS_4                           6                            67
  CLUS_5                           4                            87
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2P22.1) MUTATED       11      2     18
  DEL PEAK  4(2P22.1) WILD-TYPE    138     68    178
D33V8, multiclass
        clus
vv       DEL PEAK  4(2P22.1) MUTATED DEL PEAK  4(2P22.1) WILD-TYPE
  CLUS_1                          11                           138
  CLUS_2                           2                            68
  CLUS_3                          18                           178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2P22.1) MUTATED       13      7     11
  DEL PEAK  4(2P22.1) WILD-TYPE    133    111    140
D33V9, multiclass
        clus
vv       DEL PEAK  4(2P22.1) MUTATED DEL PEAK  4(2P22.1) WILD-TYPE
  CLUS_1                          13                           133
  CLUS_2                           7                           111
  CLUS_3                          11                           140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2P22.1) MUTATED        5      0     17      2      7
  DEL PEAK  4(2P22.1) WILD-TYPE     90     37    108     59     90
D33V10, multiclass
        clus
vv       DEL PEAK  4(2P22.1) MUTATED DEL PEAK  4(2P22.1) WILD-TYPE
  CLUS_1                           5                            90
  CLUS_2                           0                            37
  CLUS_3                          17                           108
  CLUS_4                           2                            59
  CLUS_5                           7                            90
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK  5(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED        8     39     25
  DEL PEAK  5(2Q22.1) WILD-TYPE    227     77     43
D34V1, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           8                           227
  CLUS_2                          39                            77
  CLUS_3                          25                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED       33      2     14
  DEL PEAK  5(2Q22.1) WILD-TYPE     63    104    115
D34V2, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          33                            63
  CLUS_2                           2                           104
  CLUS_3                          14                           115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED        4      3     13
  DEL PEAK  5(2Q22.1) WILD-TYPE     37     56     49
D34V3, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           4                            37
  CLUS_2                           3                            56
  CLUS_3                          13                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED        4     13      3
  DEL PEAK  5(2Q22.1) WILD-TYPE     43     52     47
D34V4, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           4                            43
  CLUS_2                          13                            52
  CLUS_3                           3                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED       38      6     15
  DEL PEAK  5(2Q22.1) WILD-TYPE     86    106    119
D34V5, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          38                            86
  CLUS_2                           6                           106
  CLUS_3                          15                           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED       37      4     18
  DEL PEAK  5(2Q22.1) WILD-TYPE    101     93    117
D34V6, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          37                           101
  CLUS_2                           4                            93
  CLUS_3                          18                           117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q22.1) MUTATED        7      5     31     11     18
  DEL PEAK  5(2Q22.1) WILD-TYPE     81     35     92     62     73
D34V7, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           7                            81
  CLUS_2                           5                            35
  CLUS_3                          31                            92
  CLUS_4                          11                            62
  CLUS_5                          18                            73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED       16     10     46
  DEL PEAK  5(2Q22.1) WILD-TYPE    133     60    150
D34V8, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          16                           133
  CLUS_2                          10                            60
  CLUS_3                          46                           150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q22.1) MUTATED       32     23     17
  DEL PEAK  5(2Q22.1) WILD-TYPE    114     95    134
D34V9, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          32                           114
  CLUS_2                          23                            95
  CLUS_3                          17                           134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q22.1) MUTATED       14      5     35      1     17
  DEL PEAK  5(2Q22.1) WILD-TYPE     81     32     90     60     80
D34V10, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          14                            81
  CLUS_2                           5                            32
  CLUS_3                          35                            90
  CLUS_4                           1                            60
  CLUS_5                          17                            80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK  6(2Q22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q22.3) MUTATED        6     37     23
  DEL PEAK  6(2Q22.3) WILD-TYPE    229     79     45
D35V1, multiclass
        clus
vv       DEL PEAK  6(2Q22.3) MUTATED DEL PEAK  6(2Q22.3) WILD-TYPE
  CLUS_1                           6                           229
  CLUS_2                          37                            79
  CLUS_3                          23                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q22.3) MUTATED       29      2     14
  DEL PEAK  6(2Q22.3) WILD-TYPE     67    104    115
D35V2, multiclass
        clus
vv       DEL PEAK  6(2Q22.3) MUTATED DEL PEAK  6(2Q22.3) WILD-TYPE
  CLUS_1                          29                            67
  CLUS_2                           2                           104
  CLUS_3                          14                           115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q22.3) MUTATED        3      4     10
  DEL PEAK  6(2Q22.3) WILD-TYPE     38     55     52
D35V3, multiclass
        clus
vv       DEL PEAK  6(2Q22.3) MUTATED DEL PEAK  6(2Q22.3) WILD-TYPE
  CLUS_1                           3                            38
  CLUS_2                           4                            55
  CLUS_3                          10                            52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q22.3) MUTATED        4     11      2
  DEL PEAK  6(2Q22.3) WILD-TYPE     43     54     48
D35V4, multiclass
        clus
vv       DEL PEAK  6(2Q22.3) MUTATED DEL PEAK  6(2Q22.3) WILD-TYPE
  CLUS_1                           4                            43
  CLUS_2                          11                            54
  CLUS_3                           2                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q22.3) MUTATED       34      5     15
  DEL PEAK  6(2Q22.3) WILD-TYPE     90    107    119
D35V5, multiclass
        clus
vv       DEL PEAK  6(2Q22.3) MUTATED DEL PEAK  6(2Q22.3) WILD-TYPE
  CLUS_1                          34                            90
  CLUS_2                           5                           107
  CLUS_3                          15                           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q22.3) MUTATED       33      3     18
  DEL PEAK  6(2Q22.3) WILD-TYPE    105     94    117
D35V6, multiclass
        clus
vv       DEL PEAK  6(2Q22.3) MUTATED DEL PEAK  6(2Q22.3) WILD-TYPE
  CLUS_1                          33                           105
  CLUS_2                           3                            94
  CLUS_3                          18                           117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(2Q22.3) MUTATED        8      6     26      9     17
  DEL PEAK  6(2Q22.3) WILD-TYPE     80     34     97     64     74
D35V7, multiclass
        clus
vv       DEL PEAK  6(2Q22.3) MUTATED DEL PEAK  6(2Q22.3) WILD-TYPE
  CLUS_1                           8                            80
  CLUS_2                           6                            34
  CLUS_3                          26                            97
  CLUS_4                           9                            64
  CLUS_5                          17                            74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q22.3) MUTATED       15     11     40
  DEL PEAK  6(2Q22.3) WILD-TYPE    134     59    156
D35V8, multiclass
        clus
vv       DEL PEAK  6(2Q22.3) MUTATED DEL PEAK  6(2Q22.3) WILD-TYPE
  CLUS_1                          15                           134
  CLUS_2                          11                            59
  CLUS_3                          40                           156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q22.3) MUTATED       27     21     18
  DEL PEAK  6(2Q22.3) WILD-TYPE    119     97    133
D35V9, multiclass
        clus
vv       DEL PEAK  6(2Q22.3) MUTATED DEL PEAK  6(2Q22.3) WILD-TYPE
  CLUS_1                          27                           119
  CLUS_2                          21                            97
  CLUS_3                          18                           133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(2Q22.3) MUTATED       12      6     28      4     16
  DEL PEAK  6(2Q22.3) WILD-TYPE     83     31     97     57     81
D35V10, multiclass
        clus
vv       DEL PEAK  6(2Q22.3) MUTATED DEL PEAK  6(2Q22.3) WILD-TYPE
  CLUS_1                          12                            83
  CLUS_2                           6                            31
  CLUS_3                          28                            97
  CLUS_4                           4                            57
  CLUS_5                          16                            81
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK  7(3P13) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P13) MUTATED       51     12      4
  DEL PEAK  7(3P13) WILD-TYPE    184    104     64
D36V1, multiclass
        clus
vv       DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE
  CLUS_1                        51                         184
  CLUS_2                        12                         104
  CLUS_3                         4                          64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P13) MUTATED        4     11     39
  DEL PEAK  7(3P13) WILD-TYPE     92     95     90
D36V2, multiclass
        clus
vv       DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE
  CLUS_1                         4                          92
  CLUS_2                        11                          95
  CLUS_3                        39                          90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P13) MUTATED        6      9      7
  DEL PEAK  7(3P13) WILD-TYPE     35     50     55
D36V3, multiclass
        clus
vv       DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE
  CLUS_1                         6                          35
  CLUS_2                         9                          50
  CLUS_3                         7                          55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P13) MUTATED        7      8      7
  DEL PEAK  7(3P13) WILD-TYPE     40     57     43
D36V4, multiclass
        clus
vv       DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE
  CLUS_1                         7                          40
  CLUS_2                         8                          57
  CLUS_3                         7                          43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P13) MUTATED        7     11     42
  DEL PEAK  7(3P13) WILD-TYPE    117    101     92
D36V5, multiclass
        clus
vv       DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE
  CLUS_1                         7                         117
  CLUS_2                        11                         101
  CLUS_3                        42                          92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P13) MUTATED        6     13     41
  DEL PEAK  7(3P13) WILD-TYPE    132     84     94
D36V6, multiclass
        clus
vv       DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE
  CLUS_1                         6                         132
  CLUS_2                        13                          84
  CLUS_3                        41                          94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3P13) MUTATED       13      3     25     15      9
  DEL PEAK  7(3P13) WILD-TYPE     75     37     98     58     82
D36V7, multiclass
        clus
vv       DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE
  CLUS_1                        13                          75
  CLUS_2                         3                          37
  CLUS_3                        25                          98
  CLUS_4                        15                          58
  CLUS_5                         9                          82
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P13) MUTATED       26      8     31
  DEL PEAK  7(3P13) WILD-TYPE    123     62    165
D36V8, multiclass
        clus
vv       DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE
  CLUS_1                        26                         123
  CLUS_2                         8                          62
  CLUS_3                        31                         165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P13) MUTATED       32     11     22
  DEL PEAK  7(3P13) WILD-TYPE    114    107    129
D36V9, multiclass
        clus
vv       DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE
  CLUS_1                        32                         114
  CLUS_2                        11                         107
  CLUS_3                        22                         129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3P13) MUTATED       14      4     25     15      7
  DEL PEAK  7(3P13) WILD-TYPE     81     33    100     46     90
D36V10, multiclass
        clus
vv       DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE
  CLUS_1                        14                          81
  CLUS_2                         4                          33
  CLUS_3                        25                         100
  CLUS_4                        15                          46
  CLUS_5                         7                          90
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK  8(3Q29) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q29) MUTATED       13      9      4
  DEL PEAK  8(3Q29) WILD-TYPE    222    107     64
D37V1, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        13                         222
  CLUS_2                         9                         107
  CLUS_3                         4                          64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q29) MUTATED        3      3     13
  DEL PEAK  8(3Q29) WILD-TYPE     93    103    116
D37V2, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                         3                          93
  CLUS_2                         3                         103
  CLUS_3                        13                         116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q29) MUTATED        3      5      3
  DEL PEAK  8(3Q29) WILD-TYPE     38     54     59
D37V3, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                         3                          38
  CLUS_2                         5                          54
  CLUS_3                         3                          59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q29) MUTATED        1      4      6
  DEL PEAK  8(3Q29) WILD-TYPE     46     61     44
D37V4, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                         1                          46
  CLUS_2                         4                          61
  CLUS_3                         6                          44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q29) MUTATED        7      1     13
  DEL PEAK  8(3Q29) WILD-TYPE    117    111    121
D37V5, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                         7                         117
  CLUS_2                         1                         111
  CLUS_3                        13                         121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q29) MUTATED        6      3     12
  DEL PEAK  8(3Q29) WILD-TYPE    132     94    123
D37V6, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                         6                         132
  CLUS_2                         3                          94
  CLUS_3                        12                         123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(3Q29) MUTATED        4      4      8      5      4
  DEL PEAK  8(3Q29) WILD-TYPE     84     36    115     68     87
D37V7, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                         4                          84
  CLUS_2                         4                          36
  CLUS_3                         8                         115
  CLUS_4                         5                          68
  CLUS_5                         4                          87
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q29) MUTATED        7      4     14
  DEL PEAK  8(3Q29) WILD-TYPE    142     66    182
D37V8, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                         7                         142
  CLUS_2                         4                          66
  CLUS_3                        14                         182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q29) MUTATED       10      7      8
  DEL PEAK  8(3Q29) WILD-TYPE    136    111    143
D37V9, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        10                         136
  CLUS_2                         7                         111
  CLUS_3                         8                         143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(3Q29) MUTATED        6      3      7      4      5
  DEL PEAK  8(3Q29) WILD-TYPE     89     34    118     57     92
D37V10, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                         6                          89
  CLUS_2                         3                          34
  CLUS_3                         7                         118
  CLUS_4                         4                          57
  CLUS_5                         5                          92
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK  9(4Q28.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q28.1) MUTATED        6     19      9
  DEL PEAK  9(4Q28.1) WILD-TYPE    229     97     59
D38V1, multiclass
        clus
vv       DEL PEAK  9(4Q28.1) MUTATED DEL PEAK  9(4Q28.1) WILD-TYPE
  CLUS_1                           6                           229
  CLUS_2                          19                            97
  CLUS_3                           9                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q28.1) MUTATED       15      1     10
  DEL PEAK  9(4Q28.1) WILD-TYPE     81    105    119
D38V2, multiclass
        clus
vv       DEL PEAK  9(4Q28.1) MUTATED DEL PEAK  9(4Q28.1) WILD-TYPE
  CLUS_1                          15                            81
  CLUS_2                           1                           105
  CLUS_3                          10                           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q28.1) MUTATED        2      2      9
  DEL PEAK  9(4Q28.1) WILD-TYPE     39     57     53
D38V3, multiclass
        clus
vv       DEL PEAK  9(4Q28.1) MUTATED DEL PEAK  9(4Q28.1) WILD-TYPE
  CLUS_1                           2                            39
  CLUS_2                           2                            57
  CLUS_3                           9                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q28.1) MUTATED        2      9      2
  DEL PEAK  9(4Q28.1) WILD-TYPE     45     56     48
D38V4, multiclass
        clus
vv       DEL PEAK  9(4Q28.1) MUTATED DEL PEAK  9(4Q28.1) WILD-TYPE
  CLUS_1                           2                            45
  CLUS_2                           9                            56
  CLUS_3                           2                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q28.1) MUTATED       18      2      9
  DEL PEAK  9(4Q28.1) WILD-TYPE    106    110    125
D38V5, multiclass
        clus
vv       DEL PEAK  9(4Q28.1) MUTATED DEL PEAK  9(4Q28.1) WILD-TYPE
  CLUS_1                          18                           106
  CLUS_2                           2                           110
  CLUS_3                           9                           125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q28.1) MUTATED       17      3      9
  DEL PEAK  9(4Q28.1) WILD-TYPE    121     94    126
D38V6, multiclass
        clus
vv       DEL PEAK  9(4Q28.1) MUTATED DEL PEAK  9(4Q28.1) WILD-TYPE
  CLUS_1                          17                           121
  CLUS_2                           3                            94
  CLUS_3                           9                           126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4Q28.1) MUTATED        1      1     14      6     11
  DEL PEAK  9(4Q28.1) WILD-TYPE     87     39    109     67     80
D38V7, multiclass
        clus
vv       DEL PEAK  9(4Q28.1) MUTATED DEL PEAK  9(4Q28.1) WILD-TYPE
  CLUS_1                           1                            87
  CLUS_2                           1                            39
  CLUS_3                          14                           109
  CLUS_4                           6                            67
  CLUS_5                          11                            80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q28.1) MUTATED        7      6     20
  DEL PEAK  9(4Q28.1) WILD-TYPE    142     64    176
D38V8, multiclass
        clus
vv       DEL PEAK  9(4Q28.1) MUTATED DEL PEAK  9(4Q28.1) WILD-TYPE
  CLUS_1                           7                           142
  CLUS_2                           6                            64
  CLUS_3                          20                           176
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q28.1) MUTATED       14     14      5
  DEL PEAK  9(4Q28.1) WILD-TYPE    132    104    146
D38V9, multiclass
        clus
vv       DEL PEAK  9(4Q28.1) MUTATED DEL PEAK  9(4Q28.1) WILD-TYPE
  CLUS_1                          14                           132
  CLUS_2                          14                           104
  CLUS_3                           5                           146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4Q28.1) MUTATED        5      3     14      2      9
  DEL PEAK  9(4Q28.1) WILD-TYPE     90     34    111     59     88
D38V10, multiclass
        clus
vv       DEL PEAK  9(4Q28.1) MUTATED DEL PEAK  9(4Q28.1) WILD-TYPE
  CLUS_1                           5                            90
  CLUS_2                           3                            34
  CLUS_3                          14                           111
  CLUS_4                           2                            59
  CLUS_5                           9                            88
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 10(5Q11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q11.2) MUTATED       15     48     11
  DEL PEAK 10(5Q11.2) WILD-TYPE    220     68     57
D39V1, multiclass
        clus
vv       DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE
  CLUS_1                          15                           220
  CLUS_2                          48                            68
  CLUS_3                          11                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q11.2) MUTATED       25      3     24
  DEL PEAK 10(5Q11.2) WILD-TYPE     71    103    105
D39V2, multiclass
        clus
vv       DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE
  CLUS_1                          25                            71
  CLUS_2                           3                           103
  CLUS_3                          24                           105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q11.2) MUTATED        3      7     19
  DEL PEAK 10(5Q11.2) WILD-TYPE     38     52     43
D39V3, multiclass
        clus
vv       DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE
  CLUS_1                           3                            38
  CLUS_2                           7                            52
  CLUS_3                          19                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q11.2) MUTATED        6     18      5
  DEL PEAK 10(5Q11.2) WILD-TYPE     41     47     45
D39V4, multiclass
        clus
vv       DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE
  CLUS_1                           6                            41
  CLUS_2                          18                            47
  CLUS_3                           5                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q11.2) MUTATED       31      9     27
  DEL PEAK 10(5Q11.2) WILD-TYPE     93    103    107
D39V5, multiclass
        clus
vv       DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE
  CLUS_1                          31                            93
  CLUS_2                           9                           103
  CLUS_3                          27                           107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q11.2) MUTATED       29      7     31
  DEL PEAK 10(5Q11.2) WILD-TYPE    109     90    104
D39V6, multiclass
        clus
vv       DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE
  CLUS_1                          29                           109
  CLUS_2                           7                            90
  CLUS_3                          31                           104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(5Q11.2) MUTATED        7      2     30     18     16
  DEL PEAK 10(5Q11.2) WILD-TYPE     81     38     93     55     75
D39V7, multiclass
        clus
vv       DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE
  CLUS_1                           7                            81
  CLUS_2                           2                            38
  CLUS_3                          30                            93
  CLUS_4                          18                            55
  CLUS_5                          16                            75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q11.2) MUTATED       19      4     50
  DEL PEAK 10(5Q11.2) WILD-TYPE    130     66    146
D39V8, multiclass
        clus
vv       DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE
  CLUS_1                          19                           130
  CLUS_2                           4                            66
  CLUS_3                          50                           146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(5Q11.2) MUTATED       38     23     12
  DEL PEAK 10(5Q11.2) WILD-TYPE    108     95    139
D39V9, multiclass
        clus
vv       DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE
  CLUS_1                          38                           108
  CLUS_2                          23                            95
  CLUS_3                          12                           139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(5Q11.2) MUTATED       11      4     34      9     15
  DEL PEAK 10(5Q11.2) WILD-TYPE     84     33     91     52     82
D39V10, multiclass
        clus
vv       DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE
  CLUS_1                          11                            84
  CLUS_2                           4                            33
  CLUS_3                          34                            91
  CLUS_4                           9                            52
  CLUS_5                          15                            82
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 11(5Q13.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q13.2) MUTATED       14     52     10
  DEL PEAK 11(5Q13.2) WILD-TYPE    221     64     58
D40V1, multiclass
        clus
vv       DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                          14                           221
  CLUS_2                          52                            64
  CLUS_3                          10                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q13.2) MUTATED       25      4     20
  DEL PEAK 11(5Q13.2) WILD-TYPE     71    102    109
D40V2, multiclass
        clus
vv       DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                          25                            71
  CLUS_2                           4                           102
  CLUS_3                          20                           109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q13.2) MUTATED        4      6     17
  DEL PEAK 11(5Q13.2) WILD-TYPE     37     53     45
D40V3, multiclass
        clus
vv       DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                           4                            37
  CLUS_2                           6                            53
  CLUS_3                          17                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q13.2) MUTATED        7     15      5
  DEL PEAK 11(5Q13.2) WILD-TYPE     40     50     45
D40V4, multiclass
        clus
vv       DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                           7                            40
  CLUS_2                          15                            50
  CLUS_3                           5                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q13.2) MUTATED       32      9     25
  DEL PEAK 11(5Q13.2) WILD-TYPE     92    103    109
D40V5, multiclass
        clus
vv       DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                          32                            92
  CLUS_2                           9                           103
  CLUS_3                          25                           109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q13.2) MUTATED       30     10     26
  DEL PEAK 11(5Q13.2) WILD-TYPE    108     87    109
D40V6, multiclass
        clus
vv       DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                          30                           108
  CLUS_2                          10                            87
  CLUS_3                          26                           109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(5Q13.2) MUTATED       13      1     31     18     12
  DEL PEAK 11(5Q13.2) WILD-TYPE     75     39     92     55     79
D40V7, multiclass
        clus
vv       DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                          13                            75
  CLUS_2                           1                            39
  CLUS_3                          31                            92
  CLUS_4                          18                            55
  CLUS_5                          12                            79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q13.2) MUTATED       26      3     46
  DEL PEAK 11(5Q13.2) WILD-TYPE    123     67    150
D40V8, multiclass
        clus
vv       DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                          26                           123
  CLUS_2                           3                            67
  CLUS_3                          46                           150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(5Q13.2) MUTATED       39     18     18
  DEL PEAK 11(5Q13.2) WILD-TYPE    107    100    133
D40V9, multiclass
        clus
vv       DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                          39                           107
  CLUS_2                          18                           100
  CLUS_3                          18                           133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(5Q13.2) MUTATED       14      4     35     12     10
  DEL PEAK 11(5Q13.2) WILD-TYPE     81     33     90     49     87
D40V10, multiclass
        clus
vv       DEL PEAK 11(5Q13.2) MUTATED DEL PEAK 11(5Q13.2) WILD-TYPE
  CLUS_1                          14                            81
  CLUS_2                           4                            33
  CLUS_3                          35                            90
  CLUS_4                          12                            49
  CLUS_5                          10                            87
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 12(5Q21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q21.1) MUTATED        5     48     29
  DEL PEAK 12(5Q21.1) WILD-TYPE    230     68     39
D41V1, multiclass
        clus
vv       DEL PEAK 12(5Q21.1) MUTATED DEL PEAK 12(5Q21.1) WILD-TYPE
  CLUS_1                           5                           230
  CLUS_2                          48                            68
  CLUS_3                          29                            39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q21.1) MUTATED       38      6     13
  DEL PEAK 12(5Q21.1) WILD-TYPE     58    100    116
D41V2, multiclass
        clus
vv       DEL PEAK 12(5Q21.1) MUTATED DEL PEAK 12(5Q21.1) WILD-TYPE
  CLUS_1                          38                            58
  CLUS_2                           6                           100
  CLUS_3                          13                           116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q21.1) MUTATED        6      8     17
  DEL PEAK 12(5Q21.1) WILD-TYPE     35     51     45
D41V3, multiclass
        clus
vv       DEL PEAK 12(5Q21.1) MUTATED DEL PEAK 12(5Q21.1) WILD-TYPE
  CLUS_1                           6                            35
  CLUS_2                           8                            51
  CLUS_3                          17                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q21.1) MUTATED        9     17      5
  DEL PEAK 12(5Q21.1) WILD-TYPE     38     48     45
D41V4, multiclass
        clus
vv       DEL PEAK 12(5Q21.1) MUTATED DEL PEAK 12(5Q21.1) WILD-TYPE
  CLUS_1                           9                            38
  CLUS_2                          17                            48
  CLUS_3                           5                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q21.1) MUTATED       47      8     15
  DEL PEAK 12(5Q21.1) WILD-TYPE     77    104    119
D41V5, multiclass
        clus
vv       DEL PEAK 12(5Q21.1) MUTATED DEL PEAK 12(5Q21.1) WILD-TYPE
  CLUS_1                          47                            77
  CLUS_2                           8                           104
  CLUS_3                          15                           119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q21.1) MUTATED       44      7     19
  DEL PEAK 12(5Q21.1) WILD-TYPE     94     90    116
D41V6, multiclass
        clus
vv       DEL PEAK 12(5Q21.1) MUTATED DEL PEAK 12(5Q21.1) WILD-TYPE
  CLUS_1                          44                            94
  CLUS_2                           7                            90
  CLUS_3                          19                           116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(5Q21.1) MUTATED        9      2     33     18     19
  DEL PEAK 12(5Q21.1) WILD-TYPE     79     38     90     55     72
D41V7, multiclass
        clus
vv       DEL PEAK 12(5Q21.1) MUTATED DEL PEAK 12(5Q21.1) WILD-TYPE
  CLUS_1                           9                            79
  CLUS_2                           2                            38
  CLUS_3                          33                            90
  CLUS_4                          18                            55
  CLUS_5                          19                            72
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q21.1) MUTATED       25      7     49
  DEL PEAK 12(5Q21.1) WILD-TYPE    124     63    147
D41V8, multiclass
        clus
vv       DEL PEAK 12(5Q21.1) MUTATED DEL PEAK 12(5Q21.1) WILD-TYPE
  CLUS_1                          25                           124
  CLUS_2                           7                            63
  CLUS_3                          49                           147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q21.1) MUTATED       39     22     20
  DEL PEAK 12(5Q21.1) WILD-TYPE    107     96    131
D41V9, multiclass
        clus
vv       DEL PEAK 12(5Q21.1) MUTATED DEL PEAK 12(5Q21.1) WILD-TYPE
  CLUS_1                          39                           107
  CLUS_2                          22                            96
  CLUS_3                          20                           131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(5Q21.1) MUTATED       14      4     38     10     15
  DEL PEAK 12(5Q21.1) WILD-TYPE     81     33     87     51     82
D41V10, multiclass
        clus
vv       DEL PEAK 12(5Q21.1) MUTATED DEL PEAK 12(5Q21.1) WILD-TYPE
  CLUS_1                          14                            81
  CLUS_2                           4                            33
  CLUS_3                          38                            87
  CLUS_4                          10                            51
  CLUS_5                          15                            82
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 13(6Q14.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q14.3) MUTATED       31     72     45
  DEL PEAK 13(6Q14.3) WILD-TYPE    204     44     23
D42V1, multiclass
        clus
vv       DEL PEAK 13(6Q14.3) MUTATED DEL PEAK 13(6Q14.3) WILD-TYPE
  CLUS_1                          31                           204
  CLUS_2                          72                            44
  CLUS_3                          45                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q14.3) MUTATED       68      8     29
  DEL PEAK 13(6Q14.3) WILD-TYPE     28     98    100
D42V2, multiclass
        clus
vv       DEL PEAK 13(6Q14.3) MUTATED DEL PEAK 13(6Q14.3) WILD-TYPE
  CLUS_1                          68                            28
  CLUS_2                           8                            98
  CLUS_3                          29                           100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q14.3) MUTATED       13     11     28
  DEL PEAK 13(6Q14.3) WILD-TYPE     28     48     34
D42V3, multiclass
        clus
vv       DEL PEAK 13(6Q14.3) MUTATED DEL PEAK 13(6Q14.3) WILD-TYPE
  CLUS_1                          13                            28
  CLUS_2                          11                            48
  CLUS_3                          28                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q14.3) MUTATED       17     28      7
  DEL PEAK 13(6Q14.3) WILD-TYPE     30     37     43
D42V4, multiclass
        clus
vv       DEL PEAK 13(6Q14.3) MUTATED DEL PEAK 13(6Q14.3) WILD-TYPE
  CLUS_1                          17                            30
  CLUS_2                          28                            37
  CLUS_3                           7                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q14.3) MUTATED       70     18     36
  DEL PEAK 13(6Q14.3) WILD-TYPE     54     94     98
D42V5, multiclass
        clus
vv       DEL PEAK 13(6Q14.3) MUTATED DEL PEAK 13(6Q14.3) WILD-TYPE
  CLUS_1                          70                            54
  CLUS_2                          18                            94
  CLUS_3                          36                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q14.3) MUTATED       76     11     37
  DEL PEAK 13(6Q14.3) WILD-TYPE     62     86     98
D42V6, multiclass
        clus
vv       DEL PEAK 13(6Q14.3) MUTATED DEL PEAK 13(6Q14.3) WILD-TYPE
  CLUS_1                          76                            62
  CLUS_2                          11                            86
  CLUS_3                          37                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(6Q14.3) MUTATED       17     14     55     29     32
  DEL PEAK 13(6Q14.3) WILD-TYPE     71     26     68     44     59
D42V7, multiclass
        clus
vv       DEL PEAK 13(6Q14.3) MUTATED DEL PEAK 13(6Q14.3) WILD-TYPE
  CLUS_1                          17                            71
  CLUS_2                          14                            26
  CLUS_3                          55                            68
  CLUS_4                          29                            44
  CLUS_5                          32                            59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q14.3) MUTATED       36     26     85
  DEL PEAK 13(6Q14.3) WILD-TYPE    113     44    111
D42V8, multiclass
        clus
vv       DEL PEAK 13(6Q14.3) MUTATED DEL PEAK 13(6Q14.3) WILD-TYPE
  CLUS_1                          36                           113
  CLUS_2                          26                            44
  CLUS_3                          85                           111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q14.3) MUTATED       69     39     39
  DEL PEAK 13(6Q14.3) WILD-TYPE     77     79    112
D42V9, multiclass
        clus
vv       DEL PEAK 13(6Q14.3) MUTATED DEL PEAK 13(6Q14.3) WILD-TYPE
  CLUS_1                          69                            77
  CLUS_2                          39                            79
  CLUS_3                          39                           112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(6Q14.3) MUTATED       30     14     58     15     30
  DEL PEAK 13(6Q14.3) WILD-TYPE     65     23     67     46     67
D42V10, multiclass
        clus
vv       DEL PEAK 13(6Q14.3) MUTATED DEL PEAK 13(6Q14.3) WILD-TYPE
  CLUS_1                          30                            65
  CLUS_2                          14                            23
  CLUS_3                          58                            67
  CLUS_4                          15                            46
  CLUS_5                          30                            67
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 14(7Q31.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7Q31.33) MUTATED        8     12      3
  DEL PEAK 14(7Q31.33) WILD-TYPE    227    104     65
D43V1, multiclass
        clus
vv       DEL PEAK 14(7Q31.33) MUTATED DEL PEAK 14(7Q31.33) WILD-TYPE
  CLUS_1                            8                            227
  CLUS_2                           12                            104
  CLUS_3                            3                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7Q31.33) MUTATED        7      1      6
  DEL PEAK 14(7Q31.33) WILD-TYPE     89    105    123
D43V2, multiclass
        clus
vv       DEL PEAK 14(7Q31.33) MUTATED DEL PEAK 14(7Q31.33) WILD-TYPE
  CLUS_1                            7                             89
  CLUS_2                            1                            105
  CLUS_3                            6                            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7Q31.33) MUTATED        0      0      5
  DEL PEAK 14(7Q31.33) WILD-TYPE     41     59     57
D43V3, multiclass
        clus
vv       DEL PEAK 14(7Q31.33) MUTATED DEL PEAK 14(7Q31.33) WILD-TYPE
  CLUS_1                            0                             41
  CLUS_2                            0                             59
  CLUS_3                            5                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7Q31.33) MUTATED        0      5      0
  DEL PEAK 14(7Q31.33) WILD-TYPE     47     60     50
D43V4, multiclass
        clus
vv       DEL PEAK 14(7Q31.33) MUTATED DEL PEAK 14(7Q31.33) WILD-TYPE
  CLUS_1                            0                             47
  CLUS_2                            5                             60
  CLUS_3                            0                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7Q31.33) MUTATED       10      0      8
  DEL PEAK 14(7Q31.33) WILD-TYPE    114    112    126
D43V5, multiclass
        clus
vv       DEL PEAK 14(7Q31.33) MUTATED DEL PEAK 14(7Q31.33) WILD-TYPE
  CLUS_1                           10                            114
  CLUS_2                            0                            112
  CLUS_3                            8                            126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7Q31.33) MUTATED        8      0     10
  DEL PEAK 14(7Q31.33) WILD-TYPE    130     97    125
D43V6, multiclass
        clus
vv       DEL PEAK 14(7Q31.33) MUTATED DEL PEAK 14(7Q31.33) WILD-TYPE
  CLUS_1                            8                            130
  CLUS_2                            0                             97
  CLUS_3                           10                            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(7Q31.33) MUTATED        2      0     11      4      6
  DEL PEAK 14(7Q31.33) WILD-TYPE     86     40    112     69     85
D43V7, multiclass
        clus
vv       DEL PEAK 14(7Q31.33) MUTATED DEL PEAK 14(7Q31.33) WILD-TYPE
  CLUS_1                            2                             86
  CLUS_2                            0                             40
  CLUS_3                           11                            112
  CLUS_4                            4                             69
  CLUS_5                            6                             85
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7Q31.33) MUTATED        6      1     16
  DEL PEAK 14(7Q31.33) WILD-TYPE    143     69    180
D43V8, multiclass
        clus
vv       DEL PEAK 14(7Q31.33) MUTATED DEL PEAK 14(7Q31.33) WILD-TYPE
  CLUS_1                            6                            143
  CLUS_2                            1                             69
  CLUS_3                           16                            180
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7Q31.33) MUTATED       13      6      4
  DEL PEAK 14(7Q31.33) WILD-TYPE    133    112    147
D43V9, multiclass
        clus
vv       DEL PEAK 14(7Q31.33) MUTATED DEL PEAK 14(7Q31.33) WILD-TYPE
  CLUS_1                           13                            133
  CLUS_2                            6                            112
  CLUS_3                            4                            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(7Q31.33) MUTATED        6      0     13      1      3
  DEL PEAK 14(7Q31.33) WILD-TYPE     89     37    112     60     94
D43V10, multiclass
        clus
vv       DEL PEAK 14(7Q31.33) MUTATED DEL PEAK 14(7Q31.33) WILD-TYPE
  CLUS_1                            6                             89
  CLUS_2                            0                             37
  CLUS_3                           13                            112
  CLUS_4                            1                             60
  CLUS_5                            3                             94
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 15(8P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P21.3) MUTATED      129     88     25
  DEL PEAK 15(8P21.3) WILD-TYPE    106     28     43
D44V1, multiclass
        clus
vv       DEL PEAK 15(8P21.3) MUTATED DEL PEAK 15(8P21.3) WILD-TYPE
  CLUS_1                         129                           106
  CLUS_2                          88                            28
  CLUS_3                          25                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P21.3) MUTATED       53     35     95
  DEL PEAK 15(8P21.3) WILD-TYPE     43     71     34
D44V2, multiclass
        clus
vv       DEL PEAK 15(8P21.3) MUTATED DEL PEAK 15(8P21.3) WILD-TYPE
  CLUS_1                          53                            43
  CLUS_2                          35                            71
  CLUS_3                          95                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P21.3) MUTATED       21     29     44
  DEL PEAK 15(8P21.3) WILD-TYPE     20     30     18
D44V3, multiclass
        clus
vv       DEL PEAK 15(8P21.3) MUTATED DEL PEAK 15(8P21.3) WILD-TYPE
  CLUS_1                          21                            20
  CLUS_2                          29                            30
  CLUS_3                          44                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P21.3) MUTATED       25     45     24
  DEL PEAK 15(8P21.3) WILD-TYPE     22     20     26
D44V4, multiclass
        clus
vv       DEL PEAK 15(8P21.3) MUTATED DEL PEAK 15(8P21.3) WILD-TYPE
  CLUS_1                          25                            22
  CLUS_2                          45                            20
  CLUS_3                          24                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P21.3) MUTATED       67     41    101
  DEL PEAK 15(8P21.3) WILD-TYPE     57     71     33
D44V5, multiclass
        clus
vv       DEL PEAK 15(8P21.3) MUTATED DEL PEAK 15(8P21.3) WILD-TYPE
  CLUS_1                          67                            57
  CLUS_2                          41                            71
  CLUS_3                         101                            33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P21.3) MUTATED       69     42     98
  DEL PEAK 15(8P21.3) WILD-TYPE     69     55     37
D44V6, multiclass
        clus
vv       DEL PEAK 15(8P21.3) MUTATED DEL PEAK 15(8P21.3) WILD-TYPE
  CLUS_1                          69                            69
  CLUS_2                          42                            55
  CLUS_3                          98                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P21.3) MUTATED       35     11     81     57     56
  DEL PEAK 15(8P21.3) WILD-TYPE     53     29     42     16     35
D44V7, multiclass
        clus
vv       DEL PEAK 15(8P21.3) MUTATED DEL PEAK 15(8P21.3) WILD-TYPE
  CLUS_1                          35                            53
  CLUS_2                          11                            29
  CLUS_3                          81                            42
  CLUS_4                          57                            16
  CLUS_5                          56                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P21.3) MUTATED       71     32    137
  DEL PEAK 15(8P21.3) WILD-TYPE     78     38     59
D44V8, multiclass
        clus
vv       DEL PEAK 15(8P21.3) MUTATED DEL PEAK 15(8P21.3) WILD-TYPE
  CLUS_1                          71                            78
  CLUS_2                          32                            38
  CLUS_3                         137                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(8P21.3) MUTATED       99     75     66
  DEL PEAK 15(8P21.3) WILD-TYPE     47     43     85
D44V9, multiclass
        clus
vv       DEL PEAK 15(8P21.3) MUTATED DEL PEAK 15(8P21.3) WILD-TYPE
  CLUS_1                          99                            47
  CLUS_2                          75                            43
  CLUS_3                          66                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(8P21.3) MUTATED       44     18     84     38     56
  DEL PEAK 15(8P21.3) WILD-TYPE     51     19     41     23     41
D44V10, multiclass
        clus
vv       DEL PEAK 15(8P21.3) MUTATED DEL PEAK 15(8P21.3) WILD-TYPE
  CLUS_1                          44                            51
  CLUS_2                          18                            19
  CLUS_3                          84                            41
  CLUS_4                          38                            23
  CLUS_5                          56                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 16(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P11.21) MUTATED       86     48      2
  DEL PEAK 16(8P11.21) WILD-TYPE    149     68     66
D45V1, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           86                            149
  CLUS_2                           48                             68
  CLUS_3                            2                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P11.21) MUTATED       29     12     64
  DEL PEAK 16(8P11.21) WILD-TYPE     67     94     65
D45V2, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           29                             67
  CLUS_2                           12                             94
  CLUS_3                           64                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P11.21) MUTATED       14     17     19
  DEL PEAK 16(8P11.21) WILD-TYPE     27     42     43
D45V3, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           14                             27
  CLUS_2                           17                             42
  CLUS_3                           19                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P11.21) MUTATED       17     21     12
  DEL PEAK 16(8P11.21) WILD-TYPE     30     44     38
D45V4, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           17                             30
  CLUS_2                           21                             44
  CLUS_3                           12                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P11.21) MUTATED       39     18     62
  DEL PEAK 16(8P11.21) WILD-TYPE     85     94     72
D45V5, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           39                             85
  CLUS_2                           18                             94
  CLUS_3                           62                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P11.21) MUTATED       35     21     63
  DEL PEAK 16(8P11.21) WILD-TYPE    103     76     72
D45V6, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           35                            103
  CLUS_2                           21                             76
  CLUS_3                           63                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(8P11.21) MUTATED       16      6     46     32     35
  DEL PEAK 16(8P11.21) WILD-TYPE     72     34     77     41     56
D45V7, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           16                             72
  CLUS_2                            6                             34
  CLUS_3                           46                             77
  CLUS_4                           32                             41
  CLUS_5                           35                             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P11.21) MUTATED       30     18     87
  DEL PEAK 16(8P11.21) WILD-TYPE    119     52    109
D45V8, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           30                            119
  CLUS_2                           18                             52
  CLUS_3                           87                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(8P11.21) MUTATED       58     45     32
  DEL PEAK 16(8P11.21) WILD-TYPE     88     73    119
D45V9, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           58                             88
  CLUS_2                           45                             73
  CLUS_3                           32                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(8P11.21) MUTATED       16      9     55     22     33
  DEL PEAK 16(8P11.21) WILD-TYPE     79     28     70     39     64
D45V10, multiclass
        clus
vv       DEL PEAK 16(8P11.21) MUTATED DEL PEAK 16(8P11.21) WILD-TYPE
  CLUS_1                           16                             79
  CLUS_2                            9                             28
  CLUS_3                           55                             70
  CLUS_4                           22                             39
  CLUS_5                           33                             64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 17(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P23) MUTATED       12     25      1
  DEL PEAK 17(9P23) WILD-TYPE    223     91     67
D46V1, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        12                         223
  CLUS_2                        25                          91
  CLUS_3                         1                          67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P23) MUTATED        7      5     14
  DEL PEAK 17(9P23) WILD-TYPE     89    101    115
D46V2, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                         7                          89
  CLUS_2                         5                         101
  CLUS_3                        14                         115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P23) MUTATED        2      2     13
  DEL PEAK 17(9P23) WILD-TYPE     39     57     49
D46V3, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                         2                          39
  CLUS_2                         2                          57
  CLUS_3                        13                          49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P23) MUTATED        3     12      2
  DEL PEAK 17(9P23) WILD-TYPE     44     53     48
D46V4, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                         3                          44
  CLUS_2                        12                          53
  CLUS_3                         2                          48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P23) MUTATED        9      2     19
  DEL PEAK 17(9P23) WILD-TYPE    115    110    115
D46V5, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                         9                         115
  CLUS_2                         2                         110
  CLUS_3                        19                         115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P23) MUTATED        8      4     18
  DEL PEAK 17(9P23) WILD-TYPE    130     93    117
D46V6, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                         8                         130
  CLUS_2                         4                          93
  CLUS_3                        18                         117
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(9P23) MUTATED        3      2     16      9      7
  DEL PEAK 17(9P23) WILD-TYPE     85     38    107     64     84
D46V7, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                         3                          85
  CLUS_2                         2                          38
  CLUS_3                        16                         107
  CLUS_4                         9                          64
  CLUS_5                         7                          84
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P23) MUTATED       11      5     21
  DEL PEAK 17(9P23) WILD-TYPE    138     65    175
D46V8, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        11                         138
  CLUS_2                         5                          65
  CLUS_3                        21                         175
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9P23) MUTATED       21      8      8
  DEL PEAK 17(9P23) WILD-TYPE    125    110    143
D46V9, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                        21                         125
  CLUS_2                         8                         110
  CLUS_3                         8                         143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(9P23) MUTATED        6      3     17      6      5
  DEL PEAK 17(9P23) WILD-TYPE     89     34    108     55     92
D46V10, multiclass
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  CLUS_1                         6                          89
  CLUS_2                         3                          34
  CLUS_3                        17                         108
  CLUS_4                         6                          55
  CLUS_5                         5                          92
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 18(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q23.31) MUTATED       59     57     10
  DEL PEAK 18(10Q23.31) WILD-TYPE    176     59     58
D47V1, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            59                             176
  CLUS_2                            57                              59
  CLUS_3                            10                              58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q23.31) MUTATED       23     12     66
  DEL PEAK 18(10Q23.31) WILD-TYPE     73     94     63
D47V2, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            23                              73
  CLUS_2                            12                              94
  CLUS_3                            66                              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q23.31) MUTATED       13     16     29
  DEL PEAK 18(10Q23.31) WILD-TYPE     28     43     33
D47V3, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            13                              28
  CLUS_2                            16                              43
  CLUS_3                            29                              33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q23.31) MUTATED       15     29     14
  DEL PEAK 18(10Q23.31) WILD-TYPE     32     36     36
D47V4, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            15                              32
  CLUS_2                            29                              36
  CLUS_3                            14                              36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q23.31) MUTATED       22     15     79
  DEL PEAK 18(10Q23.31) WILD-TYPE    102     97     55
D47V5, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            22                             102
  CLUS_2                            15                              97
  CLUS_3                            79                              55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q23.31) MUTATED       21     22     73
  DEL PEAK 18(10Q23.31) WILD-TYPE    117     75     62
D47V6, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            21                             117
  CLUS_2                            22                              75
  CLUS_3                            73                              62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(10Q23.31) MUTATED       19      1     41     31     32
  DEL PEAK 18(10Q23.31) WILD-TYPE     69     39     82     42     59
D47V7, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            19                              69
  CLUS_2                             1                              39
  CLUS_3                            41                              82
  CLUS_4                            31                              42
  CLUS_5                            32                              59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q23.31) MUTATED       40      6     78
  DEL PEAK 18(10Q23.31) WILD-TYPE    109     64    118
D47V8, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            40                             109
  CLUS_2                             6                              64
  CLUS_3                            78                             118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10Q23.31) MUTATED       45     40     39
  DEL PEAK 18(10Q23.31) WILD-TYPE    101     78    112
D47V9, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            45                             101
  CLUS_2                            40                              78
  CLUS_3                            39                             112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(10Q23.31) MUTATED       18      4     43     27     32
  DEL PEAK 18(10Q23.31) WILD-TYPE     77     33     82     34     65
D47V10, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            18                              77
  CLUS_2                             4                              33
  CLUS_3                            43                              82
  CLUS_4                            27                              34
  CLUS_5                            32                              65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 19(11P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11P11.2) MUTATED        7     17      4
  DEL PEAK 19(11P11.2) WILD-TYPE    228     99     64
D48V1, multiclass
        clus
vv       DEL PEAK 19(11P11.2) MUTATED DEL PEAK 19(11P11.2) WILD-TYPE
  CLUS_1                            7                            228
  CLUS_2                           17                             99
  CLUS_3                            4                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11P11.2) MUTATED        7      3      6
  DEL PEAK 19(11P11.2) WILD-TYPE     89    103    123
D48V2, multiclass
        clus
vv       DEL PEAK 19(11P11.2) MUTATED DEL PEAK 19(11P11.2) WILD-TYPE
  CLUS_1                            7                             89
  CLUS_2                            3                            103
  CLUS_3                            6                            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11P11.2) MUTATED        0      0      7
  DEL PEAK 19(11P11.2) WILD-TYPE     41     59     55
D48V3, multiclass
        clus
vv       DEL PEAK 19(11P11.2) MUTATED DEL PEAK 19(11P11.2) WILD-TYPE
  CLUS_1                            0                             41
  CLUS_2                            0                             59
  CLUS_3                            7                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11P11.2) MUTATED        1      6      0
  DEL PEAK 19(11P11.2) WILD-TYPE     46     59     50
D48V4, multiclass
        clus
vv       DEL PEAK 19(11P11.2) MUTATED DEL PEAK 19(11P11.2) WILD-TYPE
  CLUS_1                            1                             46
  CLUS_2                            6                             59
  CLUS_3                            0                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11P11.2) MUTATED       13      5      4
  DEL PEAK 19(11P11.2) WILD-TYPE    111    107    130
D48V5, multiclass
        clus
vv       DEL PEAK 19(11P11.2) MUTATED DEL PEAK 19(11P11.2) WILD-TYPE
  CLUS_1                           13                            111
  CLUS_2                            5                            107
  CLUS_3                            4                            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11P11.2) MUTATED       14      1      7
  DEL PEAK 19(11P11.2) WILD-TYPE    124     96    128
D48V6, multiclass
        clus
vv       DEL PEAK 19(11P11.2) MUTATED DEL PEAK 19(11P11.2) WILD-TYPE
  CLUS_1                           14                            124
  CLUS_2                            1                             96
  CLUS_3                            7                            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(11P11.2) MUTATED        2      3     13      4      6
  DEL PEAK 19(11P11.2) WILD-TYPE     86     37    110     69     85
D48V7, multiclass
        clus
vv       DEL PEAK 19(11P11.2) MUTATED DEL PEAK 19(11P11.2) WILD-TYPE
  CLUS_1                            2                             86
  CLUS_2                            3                             37
  CLUS_3                           13                            110
  CLUS_4                            4                             69
  CLUS_5                            6                             85
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11P11.2) MUTATED        8      4     16
  DEL PEAK 19(11P11.2) WILD-TYPE    141     66    180
D48V8, multiclass
        clus
vv       DEL PEAK 19(11P11.2) MUTATED DEL PEAK 19(11P11.2) WILD-TYPE
  CLUS_1                            8                            141
  CLUS_2                            4                             66
  CLUS_3                           16                            180
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11P11.2) MUTATED       17      7      4
  DEL PEAK 19(11P11.2) WILD-TYPE    129    111    147
D48V9, multiclass
        clus
vv       DEL PEAK 19(11P11.2) MUTATED DEL PEAK 19(11P11.2) WILD-TYPE
  CLUS_1                           17                            129
  CLUS_2                            7                            111
  CLUS_3                            4                            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(11P11.2) MUTATED        7      4     11      1      5
  DEL PEAK 19(11P11.2) WILD-TYPE     88     33    114     60     92
D48V10, multiclass
        clus
vv       DEL PEAK 19(11P11.2) MUTATED DEL PEAK 19(11P11.2) WILD-TYPE
  CLUS_1                            7                             88
  CLUS_2                            4                             33
  CLUS_3                           11                            114
  CLUS_4                            1                             60
  CLUS_5                            5                             92
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 20(11Q23.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11Q23.2) MUTATED       20     19      4
  DEL PEAK 20(11Q23.2) WILD-TYPE    215     97     64
D49V1, multiclass
        clus
vv       DEL PEAK 20(11Q23.2) MUTATED DEL PEAK 20(11Q23.2) WILD-TYPE
  CLUS_1                           20                            215
  CLUS_2                           19                             97
  CLUS_3                            4                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11Q23.2) MUTATED       15      7     10
  DEL PEAK 20(11Q23.2) WILD-TYPE     81     99    119
D49V2, multiclass
        clus
vv       DEL PEAK 20(11Q23.2) MUTATED DEL PEAK 20(11Q23.2) WILD-TYPE
  CLUS_1                           15                             81
  CLUS_2                            7                             99
  CLUS_3                           10                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11Q23.2) MUTATED        8      5     12
  DEL PEAK 20(11Q23.2) WILD-TYPE     33     54     50
D49V3, multiclass
        clus
vv       DEL PEAK 20(11Q23.2) MUTATED DEL PEAK 20(11Q23.2) WILD-TYPE
  CLUS_1                            8                             33
  CLUS_2                            5                             54
  CLUS_3                           12                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11Q23.2) MUTATED        8     13      4
  DEL PEAK 20(11Q23.2) WILD-TYPE     39     52     46
D49V4, multiclass
        clus
vv       DEL PEAK 20(11Q23.2) MUTATED DEL PEAK 20(11Q23.2) WILD-TYPE
  CLUS_1                            8                             39
  CLUS_2                           13                             52
  CLUS_3                            4                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11Q23.2) MUTATED       14     11     13
  DEL PEAK 20(11Q23.2) WILD-TYPE    110    101    121
D49V5, multiclass
        clus
vv       DEL PEAK 20(11Q23.2) MUTATED DEL PEAK 20(11Q23.2) WILD-TYPE
  CLUS_1                           14                            110
  CLUS_2                           11                            101
  CLUS_3                           13                            121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11Q23.2) MUTATED       15     10     13
  DEL PEAK 20(11Q23.2) WILD-TYPE    123     87    122
D49V6, multiclass
        clus
vv       DEL PEAK 20(11Q23.2) MUTATED DEL PEAK 20(11Q23.2) WILD-TYPE
  CLUS_1                           15                            123
  CLUS_2                           10                             87
  CLUS_3                           13                            122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(11Q23.2) MUTATED        4      2     14     11     12
  DEL PEAK 20(11Q23.2) WILD-TYPE     84     38    109     62     79
D49V7, multiclass
        clus
vv       DEL PEAK 20(11Q23.2) MUTATED DEL PEAK 20(11Q23.2) WILD-TYPE
  CLUS_1                            4                             84
  CLUS_2                            2                             38
  CLUS_3                           14                            109
  CLUS_4                           11                             62
  CLUS_5                           12                             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11Q23.2) MUTATED       13      7     23
  DEL PEAK 20(11Q23.2) WILD-TYPE    136     63    173
D49V8, multiclass
        clus
vv       DEL PEAK 20(11Q23.2) MUTATED DEL PEAK 20(11Q23.2) WILD-TYPE
  CLUS_1                           13                            136
  CLUS_2                            7                             63
  CLUS_3                           23                            173
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11Q23.2) MUTATED       17     13     13
  DEL PEAK 20(11Q23.2) WILD-TYPE    129    105    138
D49V9, multiclass
        clus
vv       DEL PEAK 20(11Q23.2) MUTATED DEL PEAK 20(11Q23.2) WILD-TYPE
  CLUS_1                           17                            129
  CLUS_2                           13                            105
  CLUS_3                           13                            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(11Q23.2) MUTATED        7      4     13      5     14
  DEL PEAK 20(11Q23.2) WILD-TYPE     88     33    112     56     83
D49V10, multiclass
        clus
vv       DEL PEAK 20(11Q23.2) MUTATED DEL PEAK 20(11Q23.2) WILD-TYPE
  CLUS_1                            7                             88
  CLUS_2                            4                             33
  CLUS_3                           13                            112
  CLUS_4                            5                             56
  CLUS_5                           14                             83
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 21(12P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(12P13.1) MUTATED       43     50      7
  DEL PEAK 21(12P13.1) WILD-TYPE    192     66     61
D50V1, multiclass
        clus
vv       DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE
  CLUS_1                           43                            192
  CLUS_2                           50                             66
  CLUS_3                            7                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(12P13.1) MUTATED       27      9     37
  DEL PEAK 21(12P13.1) WILD-TYPE     69     97     92
D50V2, multiclass
        clus
vv       DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE
  CLUS_1                           27                             69
  CLUS_2                            9                             97
  CLUS_3                           37                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(12P13.1) MUTATED        5     12     20
  DEL PEAK 21(12P13.1) WILD-TYPE     36     47     42
D50V3, multiclass
        clus
vv       DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE
  CLUS_1                            5                             36
  CLUS_2                           12                             47
  CLUS_3                           20                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(12P13.1) MUTATED        8     21      8
  DEL PEAK 21(12P13.1) WILD-TYPE     39     44     42
D50V4, multiclass
        clus
vv       DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE
  CLUS_1                            8                             39
  CLUS_2                           21                             44
  CLUS_3                            8                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(12P13.1) MUTATED       28     17     45
  DEL PEAK 21(12P13.1) WILD-TYPE     96     95     89
D50V5, multiclass
        clus
vv       DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE
  CLUS_1                           28                             96
  CLUS_2                           17                             95
  CLUS_3                           45                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(12P13.1) MUTATED       32     13     45
  DEL PEAK 21(12P13.1) WILD-TYPE    106     84     90
D50V6, multiclass
        clus
vv       DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE
  CLUS_1                           32                            106
  CLUS_2                           13                             84
  CLUS_3                           45                             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(12P13.1) MUTATED       10      3     38     25     21
  DEL PEAK 21(12P13.1) WILD-TYPE     78     37     85     48     70
D50V7, multiclass
        clus
vv       DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE
  CLUS_1                           10                             78
  CLUS_2                            3                             37
  CLUS_3                           38                             85
  CLUS_4                           25                             48
  CLUS_5                           21                             70
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(12P13.1) MUTATED       30      4     63
  DEL PEAK 21(12P13.1) WILD-TYPE    119     66    133
D50V8, multiclass
        clus
vv       DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE
  CLUS_1                           30                            119
  CLUS_2                            4                             66
  CLUS_3                           63                            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(12P13.1) MUTATED       45     26     26
  DEL PEAK 21(12P13.1) WILD-TYPE    101     92    125
D50V9, multiclass
        clus
vv       DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE
  CLUS_1                           45                            101
  CLUS_2                           26                             92
  CLUS_3                           26                            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(12P13.1) MUTATED       23      4     39     14     17
  DEL PEAK 21(12P13.1) WILD-TYPE     72     33     86     47     80
D50V10, multiclass
        clus
vv       DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE
  CLUS_1                           23                             72
  CLUS_2                            4                             33
  CLUS_3                           39                             86
  CLUS_4                           14                             47
  CLUS_5                           17                             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 22(12Q24.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12Q24.31) MUTATED       13     22      4
  DEL PEAK 22(12Q24.31) WILD-TYPE    222     94     64
D51V1, multiclass
        clus
vv       DEL PEAK 22(12Q24.31) MUTATED DEL PEAK 22(12Q24.31) WILD-TYPE
  CLUS_1                            13                             222
  CLUS_2                            22                              94
  CLUS_3                             4                              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12Q24.31) MUTATED       10      4     14
  DEL PEAK 22(12Q24.31) WILD-TYPE     86    102    115
D51V2, multiclass
        clus
vv       DEL PEAK 22(12Q24.31) MUTATED DEL PEAK 22(12Q24.31) WILD-TYPE
  CLUS_1                            10                              86
  CLUS_2                             4                             102
  CLUS_3                            14                             115
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12Q24.31) MUTATED        3      5      6
  DEL PEAK 22(12Q24.31) WILD-TYPE     38     54     56
D51V3, multiclass
        clus
vv       DEL PEAK 22(12Q24.31) MUTATED DEL PEAK 22(12Q24.31) WILD-TYPE
  CLUS_1                             3                              38
  CLUS_2                             5                              54
  CLUS_3                             6                              56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12Q24.31) MUTATED        3      6      5
  DEL PEAK 22(12Q24.31) WILD-TYPE     44     59     45
D51V4, multiclass
        clus
vv       DEL PEAK 22(12Q24.31) MUTATED DEL PEAK 22(12Q24.31) WILD-TYPE
  CLUS_1                             3                              44
  CLUS_2                             6                              59
  CLUS_3                             5                              45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12Q24.31) MUTATED       15      3     16
  DEL PEAK 22(12Q24.31) WILD-TYPE    109    109    118
D51V5, multiclass
        clus
vv       DEL PEAK 22(12Q24.31) MUTATED DEL PEAK 22(12Q24.31) WILD-TYPE
  CLUS_1                            15                             109
  CLUS_2                             3                             109
  CLUS_3                            16                             118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12Q24.31) MUTATED       13      4     17
  DEL PEAK 22(12Q24.31) WILD-TYPE    125     93    118
D51V6, multiclass
        clus
vv       DEL PEAK 22(12Q24.31) MUTATED DEL PEAK 22(12Q24.31) WILD-TYPE
  CLUS_1                            13                             125
  CLUS_2                             4                              93
  CLUS_3                            17                             118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(12Q24.31) MUTATED        6      2     13     10      8
  DEL PEAK 22(12Q24.31) WILD-TYPE     82     38    110     63     83
D51V7, multiclass
        clus
vv       DEL PEAK 22(12Q24.31) MUTATED DEL PEAK 22(12Q24.31) WILD-TYPE
  CLUS_1                             6                              82
  CLUS_2                             2                              38
  CLUS_3                            13                             110
  CLUS_4                            10                              63
  CLUS_5                             8                              83
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12Q24.31) MUTATED       11      4     24
  DEL PEAK 22(12Q24.31) WILD-TYPE    138     66    172
D51V8, multiclass
        clus
vv       DEL PEAK 22(12Q24.31) MUTATED DEL PEAK 22(12Q24.31) WILD-TYPE
  CLUS_1                            11                             138
  CLUS_2                             4                              66
  CLUS_3                            24                             172
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12Q24.31) MUTATED       19     12      8
  DEL PEAK 22(12Q24.31) WILD-TYPE    127    106    143
D51V9, multiclass
        clus
vv       DEL PEAK 22(12Q24.31) MUTATED DEL PEAK 22(12Q24.31) WILD-TYPE
  CLUS_1                            19                             127
  CLUS_2                            12                             106
  CLUS_3                             8                             143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(12Q24.31) MUTATED        8      4     15      5      7
  DEL PEAK 22(12Q24.31) WILD-TYPE     87     33    110     56     90
D51V10, multiclass
        clus
vv       DEL PEAK 22(12Q24.31) MUTATED DEL PEAK 22(12Q24.31) WILD-TYPE
  CLUS_1                             8                              87
  CLUS_2                             4                              33
  CLUS_3                            15                             110
  CLUS_4                             5                              56
  CLUS_5                             7                              90
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 23(13Q14.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q14.13) MUTATED       65     77     38
  DEL PEAK 23(13Q14.13) WILD-TYPE    170     39     30
D52V1, multiclass
        clus
vv       DEL PEAK 23(13Q14.13) MUTATED DEL PEAK 23(13Q14.13) WILD-TYPE
  CLUS_1                            65                             170
  CLUS_2                            77                              39
  CLUS_3                            38                              30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q14.13) MUTATED       54     22     63
  DEL PEAK 23(13Q14.13) WILD-TYPE     42     84     66
D52V2, multiclass
        clus
vv       DEL PEAK 23(13Q14.13) MUTATED DEL PEAK 23(13Q14.13) WILD-TYPE
  CLUS_1                            54                              42
  CLUS_2                            22                              84
  CLUS_3                            63                              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q14.13) MUTATED       16     22     35
  DEL PEAK 23(13Q14.13) WILD-TYPE     25     37     27
D52V3, multiclass
        clus
vv       DEL PEAK 23(13Q14.13) MUTATED DEL PEAK 23(13Q14.13) WILD-TYPE
  CLUS_1                            16                              25
  CLUS_2                            22                              37
  CLUS_3                            35                              27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q14.13) MUTATED       21     34     18
  DEL PEAK 23(13Q14.13) WILD-TYPE     26     31     32
D52V4, multiclass
        clus
vv       DEL PEAK 23(13Q14.13) MUTATED DEL PEAK 23(13Q14.13) WILD-TYPE
  CLUS_1                            21                              26
  CLUS_2                            34                              31
  CLUS_3                            18                              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q14.13) MUTATED       55     29     71
  DEL PEAK 23(13Q14.13) WILD-TYPE     69     83     63
D52V5, multiclass
        clus
vv       DEL PEAK 23(13Q14.13) MUTATED DEL PEAK 23(13Q14.13) WILD-TYPE
  CLUS_1                            55                              69
  CLUS_2                            29                              83
  CLUS_3                            71                              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q14.13) MUTATED       63     24     68
  DEL PEAK 23(13Q14.13) WILD-TYPE     75     73     67
D52V6, multiclass
        clus
vv       DEL PEAK 23(13Q14.13) MUTATED DEL PEAK 23(13Q14.13) WILD-TYPE
  CLUS_1                            63                              75
  CLUS_2                            24                              73
  CLUS_3                            68                              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(13Q14.13) MUTATED       22     13     65     33     46
  DEL PEAK 23(13Q14.13) WILD-TYPE     66     27     58     40     45
D52V7, multiclass
        clus
vv       DEL PEAK 23(13Q14.13) MUTATED DEL PEAK 23(13Q14.13) WILD-TYPE
  CLUS_1                            22                              66
  CLUS_2                            13                              27
  CLUS_3                            65                              58
  CLUS_4                            33                              40
  CLUS_5                            46                              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q14.13) MUTATED       56     24     99
  DEL PEAK 23(13Q14.13) WILD-TYPE     93     46     97
D52V8, multiclass
        clus
vv       DEL PEAK 23(13Q14.13) MUTATED DEL PEAK 23(13Q14.13) WILD-TYPE
  CLUS_1                            56                              93
  CLUS_2                            24                              46
  CLUS_3                            99                              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(13Q14.13) MUTATED       72     57     50
  DEL PEAK 23(13Q14.13) WILD-TYPE     74     61    101
D52V9, multiclass
        clus
vv       DEL PEAK 23(13Q14.13) MUTATED DEL PEAK 23(13Q14.13) WILD-TYPE
  CLUS_1                            72                              74
  CLUS_2                            57                              61
  CLUS_3                            50                             101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(13Q14.13) MUTATED       35     12     66     25     41
  DEL PEAK 23(13Q14.13) WILD-TYPE     60     25     59     36     56
D52V10, multiclass
        clus
vv       DEL PEAK 23(13Q14.13) MUTATED DEL PEAK 23(13Q14.13) WILD-TYPE
  CLUS_1                            35                              60
  CLUS_2                            12                              25
  CLUS_3                            66                              59
  CLUS_4                            25                              36
  CLUS_5                            41                              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 24(13Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(13Q22.1) MUTATED       45     72     22
  DEL PEAK 24(13Q22.1) WILD-TYPE    190     44     46
D53V1, multiclass
        clus
vv       DEL PEAK 24(13Q22.1) MUTATED DEL PEAK 24(13Q22.1) WILD-TYPE
  CLUS_1                           45                            190
  CLUS_2                           72                             44
  CLUS_3                           22                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(13Q22.1) MUTATED       40     17     50
  DEL PEAK 24(13Q22.1) WILD-TYPE     56     89     79
D53V2, multiclass
        clus
vv       DEL PEAK 24(13Q22.1) MUTATED DEL PEAK 24(13Q22.1) WILD-TYPE
  CLUS_1                           40                             56
  CLUS_2                           17                             89
  CLUS_3                           50                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(13Q22.1) MUTATED       13     13     30
  DEL PEAK 24(13Q22.1) WILD-TYPE     28     46     32
D53V3, multiclass
        clus
vv       DEL PEAK 24(13Q22.1) MUTATED DEL PEAK 24(13Q22.1) WILD-TYPE
  CLUS_1                           13                             28
  CLUS_2                           13                             46
  CLUS_3                           30                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(13Q22.1) MUTATED       16     29     11
  DEL PEAK 24(13Q22.1) WILD-TYPE     31     36     39
D53V4, multiclass
        clus
vv       DEL PEAK 24(13Q22.1) MUTATED DEL PEAK 24(13Q22.1) WILD-TYPE
  CLUS_1                           16                             31
  CLUS_2                           29                             36
  CLUS_3                           11                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(13Q22.1) MUTATED       44     21     56
  DEL PEAK 24(13Q22.1) WILD-TYPE     80     91     78
D53V5, multiclass
        clus
vv       DEL PEAK 24(13Q22.1) MUTATED DEL PEAK 24(13Q22.1) WILD-TYPE
  CLUS_1                           44                             80
  CLUS_2                           21                             91
  CLUS_3                           56                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(13Q22.1) MUTATED       46     20     55
  DEL PEAK 24(13Q22.1) WILD-TYPE     92     77     80
D53V6, multiclass
        clus
vv       DEL PEAK 24(13Q22.1) MUTATED DEL PEAK 24(13Q22.1) WILD-TYPE
  CLUS_1                           46                             92
  CLUS_2                           20                             77
  CLUS_3                           55                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(13Q22.1) MUTATED       18      9     46     28     36
  DEL PEAK 24(13Q22.1) WILD-TYPE     70     31     77     45     55
D53V7, multiclass
        clus
vv       DEL PEAK 24(13Q22.1) MUTATED DEL PEAK 24(13Q22.1) WILD-TYPE
  CLUS_1                           18                             70
  CLUS_2                            9                             31
  CLUS_3                           46                             77
  CLUS_4                           28                             45
  CLUS_5                           36                             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(13Q22.1) MUTATED       42     18     77
  DEL PEAK 24(13Q22.1) WILD-TYPE    107     52    119
D53V8, multiclass
        clus
vv       DEL PEAK 24(13Q22.1) MUTATED DEL PEAK 24(13Q22.1) WILD-TYPE
  CLUS_1                           42                            107
  CLUS_2                           18                             52
  CLUS_3                           77                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(13Q22.1) MUTATED       56     43     38
  DEL PEAK 24(13Q22.1) WILD-TYPE     90     75    113
D53V9, multiclass
        clus
vv       DEL PEAK 24(13Q22.1) MUTATED DEL PEAK 24(13Q22.1) WILD-TYPE
  CLUS_1                           56                             90
  CLUS_2                           43                             75
  CLUS_3                           38                            113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(13Q22.1) MUTATED       23     11     54     19     30
  DEL PEAK 24(13Q22.1) WILD-TYPE     72     26     71     42     67
D53V10, multiclass
        clus
vv       DEL PEAK 24(13Q22.1) MUTATED DEL PEAK 24(13Q22.1) WILD-TYPE
  CLUS_1                           23                             72
  CLUS_2                           11                             26
  CLUS_3                           54                             71
  CLUS_4                           19                             42
  CLUS_5                           30                             67
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 25(15Q21.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(15Q21.3) MUTATED       12     32      4
  DEL PEAK 25(15Q21.3) WILD-TYPE    223     84     64
D54V1, multiclass
        clus
vv       DEL PEAK 25(15Q21.3) MUTATED DEL PEAK 25(15Q21.3) WILD-TYPE
  CLUS_1                           12                            223
  CLUS_2                           32                             84
  CLUS_3                            4                             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(15Q21.3) MUTATED       14      2     23
  DEL PEAK 25(15Q21.3) WILD-TYPE     82    104    106
D54V2, multiclass
        clus
vv       DEL PEAK 25(15Q21.3) MUTATED DEL PEAK 25(15Q21.3) WILD-TYPE
  CLUS_1                           14                             82
  CLUS_2                            2                            104
  CLUS_3                           23                            106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(15Q21.3) MUTATED        4      1     13
  DEL PEAK 25(15Q21.3) WILD-TYPE     37     58     49
D54V3, multiclass
        clus
vv       DEL PEAK 25(15Q21.3) MUTATED DEL PEAK 25(15Q21.3) WILD-TYPE
  CLUS_1                            4                             37
  CLUS_2                            1                             58
  CLUS_3                           13                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(15Q21.3) MUTATED        4     13      1
  DEL PEAK 25(15Q21.3) WILD-TYPE     43     52     49
D54V4, multiclass
        clus
vv       DEL PEAK 25(15Q21.3) MUTATED DEL PEAK 25(15Q21.3) WILD-TYPE
  CLUS_1                            4                             43
  CLUS_2                           13                             52
  CLUS_3                            1                             49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(15Q21.3) MUTATED       16      2     24
  DEL PEAK 25(15Q21.3) WILD-TYPE    108    110    110
D54V5, multiclass
        clus
vv       DEL PEAK 25(15Q21.3) MUTATED DEL PEAK 25(15Q21.3) WILD-TYPE
  CLUS_1                           16                            108
  CLUS_2                            2                            110
  CLUS_3                           24                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(15Q21.3) MUTATED       12      4     26
  DEL PEAK 25(15Q21.3) WILD-TYPE    126     93    109
D54V6, multiclass
        clus
vv       DEL PEAK 25(15Q21.3) MUTATED DEL PEAK 25(15Q21.3) WILD-TYPE
  CLUS_1                           12                            126
  CLUS_2                            4                             93
  CLUS_3                           26                            109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(15Q21.3) MUTATED        2      5     19      7     13
  DEL PEAK 25(15Q21.3) WILD-TYPE     86     35    104     66     78
D54V7, multiclass
        clus
vv       DEL PEAK 25(15Q21.3) MUTATED DEL PEAK 25(15Q21.3) WILD-TYPE
  CLUS_1                            2                             86
  CLUS_2                            5                             35
  CLUS_3                           19                            104
  CLUS_4                            7                             66
  CLUS_5                           13                             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(15Q21.3) MUTATED        6      5     35
  DEL PEAK 25(15Q21.3) WILD-TYPE    143     65    161
D54V8, multiclass
        clus
vv       DEL PEAK 25(15Q21.3) MUTATED DEL PEAK 25(15Q21.3) WILD-TYPE
  CLUS_1                            6                            143
  CLUS_2                            5                             65
  CLUS_3                           35                            161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(15Q21.3) MUTATED       26     17      3
  DEL PEAK 25(15Q21.3) WILD-TYPE    120    101    148
D54V9, multiclass
        clus
vv       DEL PEAK 25(15Q21.3) MUTATED DEL PEAK 25(15Q21.3) WILD-TYPE
  CLUS_1                           26                            120
  CLUS_2                           17                            101
  CLUS_3                            3                            148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(15Q21.3) MUTATED        4      3     24      4     11
  DEL PEAK 25(15Q21.3) WILD-TYPE     91     34    101     57     86
D54V10, multiclass
        clus
vv       DEL PEAK 25(15Q21.3) MUTATED DEL PEAK 25(15Q21.3) WILD-TYPE
  CLUS_1                            4                             91
  CLUS_2                            3                             34
  CLUS_3                           24                            101
  CLUS_4                            4                             57
  CLUS_5                           11                             86
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 26(16Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(16Q22.3) MUTATED       70     77     11
  DEL PEAK 26(16Q22.3) WILD-TYPE    165     39     57
D55V1, multiclass
        clus
vv       DEL PEAK 26(16Q22.3) MUTATED DEL PEAK 26(16Q22.3) WILD-TYPE
  CLUS_1                           70                            165
  CLUS_2                           77                             39
  CLUS_3                           11                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(16Q22.3) MUTATED       38     17     64
  DEL PEAK 26(16Q22.3) WILD-TYPE     58     89     65
D55V2, multiclass
        clus
vv       DEL PEAK 26(16Q22.3) MUTATED DEL PEAK 26(16Q22.3) WILD-TYPE
  CLUS_1                           38                             58
  CLUS_2                           17                             89
  CLUS_3                           64                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(16Q22.3) MUTATED       12     18     25
  DEL PEAK 26(16Q22.3) WILD-TYPE     29     41     37
D55V3, multiclass
        clus
vv       DEL PEAK 26(16Q22.3) MUTATED DEL PEAK 26(16Q22.3) WILD-TYPE
  CLUS_1                           12                             29
  CLUS_2                           18                             41
  CLUS_3                           25                             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(16Q22.3) MUTATED       12     27     16
  DEL PEAK 26(16Q22.3) WILD-TYPE     35     38     34
D55V4, multiclass
        clus
vv       DEL PEAK 26(16Q22.3) MUTATED DEL PEAK 26(16Q22.3) WILD-TYPE
  CLUS_1                           12                             35
  CLUS_2                           27                             38
  CLUS_3                           16                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(16Q22.3) MUTATED       43     26     72
  DEL PEAK 26(16Q22.3) WILD-TYPE     81     86     62
D55V5, multiclass
        clus
vv       DEL PEAK 26(16Q22.3) MUTATED DEL PEAK 26(16Q22.3) WILD-TYPE
  CLUS_1                           43                             81
  CLUS_2                           26                             86
  CLUS_3                           72                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(16Q22.3) MUTATED       42     24     75
  DEL PEAK 26(16Q22.3) WILD-TYPE     96     73     60
D55V6, multiclass
        clus
vv       DEL PEAK 26(16Q22.3) MUTATED DEL PEAK 26(16Q22.3) WILD-TYPE
  CLUS_1                           42                             96
  CLUS_2                           24                             73
  CLUS_3                           75                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(16Q22.3) MUTATED       25      6     65     25     35
  DEL PEAK 26(16Q22.3) WILD-TYPE     63     34     58     48     56
D55V7, multiclass
        clus
vv       DEL PEAK 26(16Q22.3) MUTATED DEL PEAK 26(16Q22.3) WILD-TYPE
  CLUS_1                           25                             63
  CLUS_2                            6                             34
  CLUS_3                           65                             58
  CLUS_4                           25                             48
  CLUS_5                           35                             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(16Q22.3) MUTATED       49     11     96
  DEL PEAK 26(16Q22.3) WILD-TYPE    100     59    100
D55V8, multiclass
        clus
vv       DEL PEAK 26(16Q22.3) MUTATED DEL PEAK 26(16Q22.3) WILD-TYPE
  CLUS_1                           49                            100
  CLUS_2                           11                             59
  CLUS_3                           96                            100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(16Q22.3) MUTATED       73     44     39
  DEL PEAK 26(16Q22.3) WILD-TYPE     73     74    112
D55V9, multiclass
        clus
vv       DEL PEAK 26(16Q22.3) MUTATED DEL PEAK 26(16Q22.3) WILD-TYPE
  CLUS_1                           73                             73
  CLUS_2                           44                             74
  CLUS_3                           39                            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(16Q22.3) MUTATED       33      6     65     17     35
  DEL PEAK 26(16Q22.3) WILD-TYPE     62     31     60     44     62
D55V10, multiclass
        clus
vv       DEL PEAK 26(16Q22.3) MUTATED DEL PEAK 26(16Q22.3) WILD-TYPE
  CLUS_1                           33                             62
  CLUS_2                            6                             31
  CLUS_3                           65                             60
  CLUS_4                           17                             44
  CLUS_5                           35                             62
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 27(16Q24.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(16Q24.1) MUTATED       83     83      8
  DEL PEAK 27(16Q24.1) WILD-TYPE    152     33     60
D56V1, multiclass
        clus
vv       DEL PEAK 27(16Q24.1) MUTATED DEL PEAK 27(16Q24.1) WILD-TYPE
  CLUS_1                           83                            152
  CLUS_2                           83                             33
  CLUS_3                            8                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(16Q24.1) MUTATED       39     20     74
  DEL PEAK 27(16Q24.1) WILD-TYPE     57     86     55
D56V2, multiclass
        clus
vv       DEL PEAK 27(16Q24.1) MUTATED DEL PEAK 27(16Q24.1) WILD-TYPE
  CLUS_1                           39                             57
  CLUS_2                           20                             86
  CLUS_3                           74                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(16Q24.1) MUTATED       16     22     28
  DEL PEAK 27(16Q24.1) WILD-TYPE     25     37     34
D56V3, multiclass
        clus
vv       DEL PEAK 27(16Q24.1) MUTATED DEL PEAK 27(16Q24.1) WILD-TYPE
  CLUS_1                           16                             25
  CLUS_2                           22                             37
  CLUS_3                           28                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(16Q24.1) MUTATED       20     29     17
  DEL PEAK 27(16Q24.1) WILD-TYPE     27     36     33
D56V4, multiclass
        clus
vv       DEL PEAK 27(16Q24.1) MUTATED DEL PEAK 27(16Q24.1) WILD-TYPE
  CLUS_1                           20                             27
  CLUS_2                           29                             36
  CLUS_3                           17                             33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(16Q24.1) MUTATED       48     29     78
  DEL PEAK 27(16Q24.1) WILD-TYPE     76     83     56
D56V5, multiclass
        clus
vv       DEL PEAK 27(16Q24.1) MUTATED DEL PEAK 27(16Q24.1) WILD-TYPE
  CLUS_1                           48                             76
  CLUS_2                           29                             83
  CLUS_3                           78                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(16Q24.1) MUTATED       44     34     77
  DEL PEAK 27(16Q24.1) WILD-TYPE     94     63     58
D56V6, multiclass
        clus
vv       DEL PEAK 27(16Q24.1) MUTATED DEL PEAK 27(16Q24.1) WILD-TYPE
  CLUS_1                           44                             94
  CLUS_2                           34                             63
  CLUS_3                           77                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(16Q24.1) MUTATED       28      8     62     34     39
  DEL PEAK 27(16Q24.1) WILD-TYPE     60     32     61     39     52
D56V7, multiclass
        clus
vv       DEL PEAK 27(16Q24.1) MUTATED DEL PEAK 27(16Q24.1) WILD-TYPE
  CLUS_1                           28                             60
  CLUS_2                            8                             32
  CLUS_3                           62                             61
  CLUS_4                           34                             39
  CLUS_5                           39                             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(16Q24.1) MUTATED       54     14    103
  DEL PEAK 27(16Q24.1) WILD-TYPE     95     56     93
D56V8, multiclass
        clus
vv       DEL PEAK 27(16Q24.1) MUTATED DEL PEAK 27(16Q24.1) WILD-TYPE
  CLUS_1                           54                             95
  CLUS_2                           14                             56
  CLUS_3                          103                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(16Q24.1) MUTATED       76     51     44
  DEL PEAK 27(16Q24.1) WILD-TYPE     70     67    107
D56V9, multiclass
        clus
vv       DEL PEAK 27(16Q24.1) MUTATED DEL PEAK 27(16Q24.1) WILD-TYPE
  CLUS_1                           76                             70
  CLUS_2                           51                             67
  CLUS_3                           44                            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(16Q24.1) MUTATED       31      8     67     26     39
  DEL PEAK 27(16Q24.1) WILD-TYPE     64     29     58     35     58
D56V10, multiclass
        clus
vv       DEL PEAK 27(16Q24.1) MUTATED DEL PEAK 27(16Q24.1) WILD-TYPE
  CLUS_1                           31                             64
  CLUS_2                            8                             29
  CLUS_3                           67                             58
  CLUS_4                           26                             35
  CLUS_5                           39                             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 28(17P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(17P13.1) MUTATED       58     68      5
  DEL PEAK 28(17P13.1) WILD-TYPE    177     48     63
D57V1, multiclass
        clus
vv       DEL PEAK 28(17P13.1) MUTATED DEL PEAK 28(17P13.1) WILD-TYPE
  CLUS_1                           58                            177
  CLUS_2                           68                             48
  CLUS_3                            5                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(17P13.1) MUTATED       17     15     58
  DEL PEAK 28(17P13.1) WILD-TYPE     79     91     71
D57V2, multiclass
        clus
vv       DEL PEAK 28(17P13.1) MUTATED DEL PEAK 28(17P13.1) WILD-TYPE
  CLUS_1                           17                             79
  CLUS_2                           15                             91
  CLUS_3                           58                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(17P13.1) MUTATED        6     13     23
  DEL PEAK 28(17P13.1) WILD-TYPE     35     46     39
D57V3, multiclass
        clus
vv       DEL PEAK 28(17P13.1) MUTATED DEL PEAK 28(17P13.1) WILD-TYPE
  CLUS_1                            6                             35
  CLUS_2                           13                             46
  CLUS_3                           23                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(17P13.1) MUTATED        7     23     12
  DEL PEAK 28(17P13.1) WILD-TYPE     40     42     38
D57V4, multiclass
        clus
vv       DEL PEAK 28(17P13.1) MUTATED DEL PEAK 28(17P13.1) WILD-TYPE
  CLUS_1                            7                             40
  CLUS_2                           23                             42
  CLUS_3                           12                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(17P13.1) MUTATED       22     19     71
  DEL PEAK 28(17P13.1) WILD-TYPE    102     93     63
D57V5, multiclass
        clus
vv       DEL PEAK 28(17P13.1) MUTATED DEL PEAK 28(17P13.1) WILD-TYPE
  CLUS_1                           22                            102
  CLUS_2                           19                             93
  CLUS_3                           71                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(17P13.1) MUTATED       17     21     74
  DEL PEAK 28(17P13.1) WILD-TYPE    121     76     61
D57V6, multiclass
        clus
vv       DEL PEAK 28(17P13.1) MUTATED DEL PEAK 28(17P13.1) WILD-TYPE
  CLUS_1                           17                            121
  CLUS_2                           21                             76
  CLUS_3                           74                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(17P13.1) MUTATED       20      7     50     26     26
  DEL PEAK 28(17P13.1) WILD-TYPE     68     33     73     47     65
D57V7, multiclass
        clus
vv       DEL PEAK 28(17P13.1) MUTATED DEL PEAK 28(17P13.1) WILD-TYPE
  CLUS_1                           20                             68
  CLUS_2                            7                             33
  CLUS_3                           50                             73
  CLUS_4                           26                             47
  CLUS_5                           26                             65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(17P13.1) MUTATED       39     10     80
  DEL PEAK 28(17P13.1) WILD-TYPE    110     60    116
D57V8, multiclass
        clus
vv       DEL PEAK 28(17P13.1) MUTATED DEL PEAK 28(17P13.1) WILD-TYPE
  CLUS_1                           39                            110
  CLUS_2                           10                             60
  CLUS_3                           80                            116
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(17P13.1) MUTATED       60     37     32
  DEL PEAK 28(17P13.1) WILD-TYPE     86     81    119
D57V9, multiclass
        clus
vv       DEL PEAK 28(17P13.1) MUTATED DEL PEAK 28(17P13.1) WILD-TYPE
  CLUS_1                           60                             86
  CLUS_2                           37                             81
  CLUS_3                           32                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(17P13.1) MUTATED       26      6     56     16     25
  DEL PEAK 28(17P13.1) WILD-TYPE     69     31     69     45     72
D57V10, multiclass
        clus
vv       DEL PEAK 28(17P13.1) MUTATED DEL PEAK 28(17P13.1) WILD-TYPE
  CLUS_1                           26                             69
  CLUS_2                            6                             31
  CLUS_3                           56                             69
  CLUS_4                           16                             45
  CLUS_5                           25                             72
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 29(17Q21.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(17Q21.31) MUTATED       45     37      3
  DEL PEAK 29(17Q21.31) WILD-TYPE    190     79     65
D58V1, multiclass
        clus
vv       DEL PEAK 29(17Q21.31) MUTATED DEL PEAK 29(17Q21.31) WILD-TYPE
  CLUS_1                            45                             190
  CLUS_2                            37                              79
  CLUS_3                             3                              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(17Q21.31) MUTATED        5     14     46
  DEL PEAK 29(17Q21.31) WILD-TYPE     91     92     83
D58V2, multiclass
        clus
vv       DEL PEAK 29(17Q21.31) MUTATED DEL PEAK 29(17Q21.31) WILD-TYPE
  CLUS_1                             5                              91
  CLUS_2                            14                              92
  CLUS_3                            46                              83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(17Q21.31) MUTATED        9      9     14
  DEL PEAK 29(17Q21.31) WILD-TYPE     32     50     48
D58V3, multiclass
        clus
vv       DEL PEAK 29(17Q21.31) MUTATED DEL PEAK 29(17Q21.31) WILD-TYPE
  CLUS_1                             9                              32
  CLUS_2                             9                              50
  CLUS_3                            14                              48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(17Q21.31) MUTATED       10     14      8
  DEL PEAK 29(17Q21.31) WILD-TYPE     37     51     42
D58V4, multiclass
        clus
vv       DEL PEAK 29(17Q21.31) MUTATED DEL PEAK 29(17Q21.31) WILD-TYPE
  CLUS_1                            10                              37
  CLUS_2                            14                              51
  CLUS_3                             8                              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(17Q21.31) MUTATED        9     14     53
  DEL PEAK 29(17Q21.31) WILD-TYPE    115     98     81
D58V5, multiclass
        clus
vv       DEL PEAK 29(17Q21.31) MUTATED DEL PEAK 29(17Q21.31) WILD-TYPE
  CLUS_1                             9                             115
  CLUS_2                            14                              98
  CLUS_3                            53                              81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(17Q21.31) MUTATED       10     18     48
  DEL PEAK 29(17Q21.31) WILD-TYPE    128     79     87
D58V6, multiclass
        clus
vv       DEL PEAK 29(17Q21.31) MUTATED DEL PEAK 29(17Q21.31) WILD-TYPE
  CLUS_1                            10                             128
  CLUS_2                            18                              79
  CLUS_3                            48                              87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(17Q21.31) MUTATED       10      7     27     17     22
  DEL PEAK 29(17Q21.31) WILD-TYPE     78     33     96     56     69
D58V7, multiclass
        clus
vv       DEL PEAK 29(17Q21.31) MUTATED DEL PEAK 29(17Q21.31) WILD-TYPE
  CLUS_1                            10                              78
  CLUS_2                             7                              33
  CLUS_3                            27                              96
  CLUS_4                            17                              56
  CLUS_5                            22                              69
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(17Q21.31) MUTATED       22     12     49
  DEL PEAK 29(17Q21.31) WILD-TYPE    127     58    147
D58V8, multiclass
        clus
vv       DEL PEAK 29(17Q21.31) MUTATED DEL PEAK 29(17Q21.31) WILD-TYPE
  CLUS_1                            22                             127
  CLUS_2                            12                              58
  CLUS_3                            49                             147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(17Q21.31) MUTATED       35     29     19
  DEL PEAK 29(17Q21.31) WILD-TYPE    111     89    132
D58V9, multiclass
        clus
vv       DEL PEAK 29(17Q21.31) MUTATED DEL PEAK 29(17Q21.31) WILD-TYPE
  CLUS_1                            35                             111
  CLUS_2                            29                              89
  CLUS_3                            19                             132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(17Q21.31) MUTATED       14      5     30     12     22
  DEL PEAK 29(17Q21.31) WILD-TYPE     81     32     95     49     75
D58V10, multiclass
        clus
vv       DEL PEAK 29(17Q21.31) MUTATED DEL PEAK 29(17Q21.31) WILD-TYPE
  CLUS_1                            14                              81
  CLUS_2                             5                              32
  CLUS_3                            30                              95
  CLUS_4                            12                              49
  CLUS_5                            22                              75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 30(18Q22.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(18Q22.1) MUTATED       41     65      9
  DEL PEAK 30(18Q22.1) WILD-TYPE    194     51     59
D59V1, multiclass
        clus
vv       DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE
  CLUS_1                           41                            194
  CLUS_2                           65                             51
  CLUS_3                            9                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(18Q22.1) MUTATED       28     19     36
  DEL PEAK 30(18Q22.1) WILD-TYPE     68     87     93
D59V2, multiclass
        clus
vv       DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE
  CLUS_1                           28                             68
  CLUS_2                           19                             87
  CLUS_3                           36                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(18Q22.1) MUTATED        6     14     17
  DEL PEAK 30(18Q22.1) WILD-TYPE     35     45     45
D59V3, multiclass
        clus
vv       DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE
  CLUS_1                            6                             35
  CLUS_2                           14                             45
  CLUS_3                           17                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(18Q22.1) MUTATED        5     18     14
  DEL PEAK 30(18Q22.1) WILD-TYPE     42     47     36
D59V4, multiclass
        clus
vv       DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE
  CLUS_1                            5                             42
  CLUS_2                           18                             47
  CLUS_3                           14                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(18Q22.1) MUTATED       37     17     46
  DEL PEAK 30(18Q22.1) WILD-TYPE     87     95     88
D59V5, multiclass
        clus
vv       DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE
  CLUS_1                           37                             87
  CLUS_2                           17                             95
  CLUS_3                           46                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(18Q22.1) MUTATED       32     21     47
  DEL PEAK 30(18Q22.1) WILD-TYPE    106     76     88
D59V6, multiclass
        clus
vv       DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE
  CLUS_1                           32                            106
  CLUS_2                           21                             76
  CLUS_3                           47                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(18Q22.1) MUTATED       18     10     38     21     27
  DEL PEAK 30(18Q22.1) WILD-TYPE     70     30     85     52     64
D59V7, multiclass
        clus
vv       DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE
  CLUS_1                           18                             70
  CLUS_2                           10                             30
  CLUS_3                           38                             85
  CLUS_4                           21                             52
  CLUS_5                           27                             64
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(18Q22.1) MUTATED       26     15     73
  DEL PEAK 30(18Q22.1) WILD-TYPE    123     55    123
D59V8, multiclass
        clus
vv       DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE
  CLUS_1                           26                            123
  CLUS_2                           15                             55
  CLUS_3                           73                            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(18Q22.1) MUTATED       44     39     31
  DEL PEAK 30(18Q22.1) WILD-TYPE    102     79    120
D59V9, multiclass
        clus
vv       DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE
  CLUS_1                           44                            102
  CLUS_2                           39                             79
  CLUS_3                           31                            120
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(18Q22.1) MUTATED       22     12     42      9     29
  DEL PEAK 30(18Q22.1) WILD-TYPE     73     25     83     52     68
D59V10, multiclass
        clus
vv       DEL PEAK 30(18Q22.1) MUTATED DEL PEAK 30(18Q22.1) WILD-TYPE
  CLUS_1                           22                             73
  CLUS_2                           12                             25
  CLUS_3                           42                             83
  CLUS_4                            9                             52
  CLUS_5                           29                             68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 31(19Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(19Q13.2) MUTATED       15     21      3
  DEL PEAK 31(19Q13.2) WILD-TYPE    220     95     65
D60V1, multiclass
        clus
vv       DEL PEAK 31(19Q13.2) MUTATED DEL PEAK 31(19Q13.2) WILD-TYPE
  CLUS_1                           15                            220
  CLUS_2                           21                             95
  CLUS_3                            3                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(19Q13.2) MUTATED        8      5     15
  DEL PEAK 31(19Q13.2) WILD-TYPE     88    101    114
D60V2, multiclass
        clus
vv       DEL PEAK 31(19Q13.2) MUTATED DEL PEAK 31(19Q13.2) WILD-TYPE
  CLUS_1                            8                             88
  CLUS_2                            5                            101
  CLUS_3                           15                            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(19Q13.2) MUTATED        2      2      6
  DEL PEAK 31(19Q13.2) WILD-TYPE     39     57     56
D60V3, multiclass
        clus
vv       DEL PEAK 31(19Q13.2) MUTATED DEL PEAK 31(19Q13.2) WILD-TYPE
  CLUS_1                            2                             39
  CLUS_2                            2                             57
  CLUS_3                            6                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(19Q13.2) MUTATED        1      6      3
  DEL PEAK 31(19Q13.2) WILD-TYPE     46     59     47
D60V4, multiclass
        clus
vv       DEL PEAK 31(19Q13.2) MUTATED DEL PEAK 31(19Q13.2) WILD-TYPE
  CLUS_1                            1                             46
  CLUS_2                            6                             59
  CLUS_3                            3                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(19Q13.2) MUTATED       14      4     13
  DEL PEAK 31(19Q13.2) WILD-TYPE    110    108    121
D60V5, multiclass
        clus
vv       DEL PEAK 31(19Q13.2) MUTATED DEL PEAK 31(19Q13.2) WILD-TYPE
  CLUS_1                           14                            110
  CLUS_2                            4                            108
  CLUS_3                           13                            121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(19Q13.2) MUTATED       10      5     16
  DEL PEAK 31(19Q13.2) WILD-TYPE    128     92    119
D60V6, multiclass
        clus
vv       DEL PEAK 31(19Q13.2) MUTATED DEL PEAK 31(19Q13.2) WILD-TYPE
  CLUS_1                           10                            128
  CLUS_2                            5                             92
  CLUS_3                           16                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(19Q13.2) MUTATED        2      2     16      8      9
  DEL PEAK 31(19Q13.2) WILD-TYPE     86     38    107     65     82
D60V7, multiclass
        clus
vv       DEL PEAK 31(19Q13.2) MUTATED DEL PEAK 31(19Q13.2) WILD-TYPE
  CLUS_1                            2                             86
  CLUS_2                            2                             38
  CLUS_3                           16                            107
  CLUS_4                            8                             65
  CLUS_5                            9                             82
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(19Q13.2) MUTATED        6      4     27
  DEL PEAK 31(19Q13.2) WILD-TYPE    143     66    169
D60V8, multiclass
        clus
vv       DEL PEAK 31(19Q13.2) MUTATED DEL PEAK 31(19Q13.2) WILD-TYPE
  CLUS_1                            6                            143
  CLUS_2                            4                             66
  CLUS_3                           27                            169
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(19Q13.2) MUTATED       19     12      6
  DEL PEAK 31(19Q13.2) WILD-TYPE    127    106    145
D60V9, multiclass
        clus
vv       DEL PEAK 31(19Q13.2) MUTATED DEL PEAK 31(19Q13.2) WILD-TYPE
  CLUS_1                           19                            127
  CLUS_2                           12                            106
  CLUS_3                            6                            145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(19Q13.2) MUTATED        6      1     19      3      8
  DEL PEAK 31(19Q13.2) WILD-TYPE     89     36    106     58     89
D60V10, multiclass
        clus
vv       DEL PEAK 31(19Q13.2) MUTATED DEL PEAK 31(19Q13.2) WILD-TYPE
  CLUS_1                            6                             89
  CLUS_2                            1                             36
  CLUS_3                           19                            106
  CLUS_4                            3                             58
  CLUS_5                            8                             89
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 32(21Q22.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(21Q22.2) MUTATED       24     15      1
  DEL PEAK 32(21Q22.2) WILD-TYPE    211    101     67
D61V1, multiclass
        clus
vv       DEL PEAK 32(21Q22.2) MUTATED DEL PEAK 32(21Q22.2) WILD-TYPE
  CLUS_1                           24                            211
  CLUS_2                           15                            101
  CLUS_3                            1                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(21Q22.2) MUTATED        4      9     21
  DEL PEAK 32(21Q22.2) WILD-TYPE     92     97    108
D61V2, multiclass
        clus
vv       DEL PEAK 32(21Q22.2) MUTATED DEL PEAK 32(21Q22.2) WILD-TYPE
  CLUS_1                            4                             92
  CLUS_2                            9                             97
  CLUS_3                           21                            108
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(21Q22.2) MUTATED        4      4      9
  DEL PEAK 32(21Q22.2) WILD-TYPE     37     55     53
D61V3, multiclass
        clus
vv       DEL PEAK 32(21Q22.2) MUTATED DEL PEAK 32(21Q22.2) WILD-TYPE
  CLUS_1                            4                             37
  CLUS_2                            4                             55
  CLUS_3                            9                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(21Q22.2) MUTATED        5      8      4
  DEL PEAK 32(21Q22.2) WILD-TYPE     42     57     46
D61V4, multiclass
        clus
vv       DEL PEAK 32(21Q22.2) MUTATED DEL PEAK 32(21Q22.2) WILD-TYPE
  CLUS_1                            5                             42
  CLUS_2                            8                             57
  CLUS_3                            4                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(21Q22.2) MUTATED        4     11     21
  DEL PEAK 32(21Q22.2) WILD-TYPE    120    101    113
D61V5, multiclass
        clus
vv       DEL PEAK 32(21Q22.2) MUTATED DEL PEAK 32(21Q22.2) WILD-TYPE
  CLUS_1                            4                            120
  CLUS_2                           11                            101
  CLUS_3                           21                            113
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(21Q22.2) MUTATED        3     10     23
  DEL PEAK 32(21Q22.2) WILD-TYPE    135     87    112
D61V6, multiclass
        clus
vv       DEL PEAK 32(21Q22.2) MUTATED DEL PEAK 32(21Q22.2) WILD-TYPE
  CLUS_1                            3                            135
  CLUS_2                           10                             87
  CLUS_3                           23                            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(21Q22.2) MUTATED        6      1     14      8     10
  DEL PEAK 32(21Q22.2) WILD-TYPE     82     39    109     65     81
D61V7, multiclass
        clus
vv       DEL PEAK 32(21Q22.2) MUTATED DEL PEAK 32(21Q22.2) WILD-TYPE
  CLUS_1                            6                             82
  CLUS_2                            1                             39
  CLUS_3                           14                            109
  CLUS_4                            8                             65
  CLUS_5                           10                             81
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(21Q22.2) MUTATED       14      3     22
  DEL PEAK 32(21Q22.2) WILD-TYPE    135     67    174
D61V8, multiclass
        clus
vv       DEL PEAK 32(21Q22.2) MUTATED DEL PEAK 32(21Q22.2) WILD-TYPE
  CLUS_1                           14                            135
  CLUS_2                            3                             67
  CLUS_3                           22                            174
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(21Q22.2) MUTATED       19     12      8
  DEL PEAK 32(21Q22.2) WILD-TYPE    127    106    143
D61V9, multiclass
        clus
vv       DEL PEAK 32(21Q22.2) MUTATED DEL PEAK 32(21Q22.2) WILD-TYPE
  CLUS_1                           19                            127
  CLUS_2                           12                            106
  CLUS_3                            8                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(21Q22.2) MUTATED        8      2     12      8      9
  DEL PEAK 32(21Q22.2) WILD-TYPE     87     35    113     53     88
D61V10, multiclass
        clus
vv       DEL PEAK 32(21Q22.2) MUTATED DEL PEAK 32(21Q22.2) WILD-TYPE
  CLUS_1                            8                             87
  CLUS_2                            2                             35
  CLUS_3                           12                            113
  CLUS_4                            8                             53
  CLUS_5                            9                             88
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 33(21Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(21Q22.3) MUTATED       75     42      2
  DEL PEAK 33(21Q22.3) WILD-TYPE    160     74     66
D62V1, multiclass
        clus
vv       DEL PEAK 33(21Q22.3) MUTATED DEL PEAK 33(21Q22.3) WILD-TYPE
  CLUS_1                           75                            160
  CLUS_2                           42                             74
  CLUS_3                            2                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(21Q22.3) MUTATED        7     14     78
  DEL PEAK 33(21Q22.3) WILD-TYPE     89     92     51
D62V2, multiclass
        clus
vv       DEL PEAK 33(21Q22.3) MUTATED DEL PEAK 33(21Q22.3) WILD-TYPE
  CLUS_1                            7                             89
  CLUS_2                           14                             92
  CLUS_3                           78                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(21Q22.3) MUTATED       14     13     24
  DEL PEAK 33(21Q22.3) WILD-TYPE     27     46     38
D62V3, multiclass
        clus
vv       DEL PEAK 33(21Q22.3) MUTATED DEL PEAK 33(21Q22.3) WILD-TYPE
  CLUS_1                           14                             27
  CLUS_2                           13                             46
  CLUS_3                           24                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(21Q22.3) MUTATED       14     24     13
  DEL PEAK 33(21Q22.3) WILD-TYPE     33     41     37
D62V4, multiclass
        clus
vv       DEL PEAK 33(21Q22.3) MUTATED DEL PEAK 33(21Q22.3) WILD-TYPE
  CLUS_1                           14                             33
  CLUS_2                           24                             41
  CLUS_3                           13                             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(21Q22.3) MUTATED        6     20     84
  DEL PEAK 33(21Q22.3) WILD-TYPE    118     92     50
D62V5, multiclass
        clus
vv       DEL PEAK 33(21Q22.3) MUTATED DEL PEAK 33(21Q22.3) WILD-TYPE
  CLUS_1                            6                            118
  CLUS_2                           20                             92
  CLUS_3                           84                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(21Q22.3) MUTATED        6     27     77
  DEL PEAK 33(21Q22.3) WILD-TYPE    132     70     58
D62V6, multiclass
        clus
vv       DEL PEAK 33(21Q22.3) MUTATED DEL PEAK 33(21Q22.3) WILD-TYPE
  CLUS_1                            6                            132
  CLUS_2                           27                             70
  CLUS_3                           77                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(21Q22.3) MUTATED       21      2     41     27     26
  DEL PEAK 33(21Q22.3) WILD-TYPE     67     38     82     46     65
D62V7, multiclass
        clus
vv       DEL PEAK 33(21Q22.3) MUTATED DEL PEAK 33(21Q22.3) WILD-TYPE
  CLUS_1                           21                             67
  CLUS_2                            2                             38
  CLUS_3                           41                             82
  CLUS_4                           27                             46
  CLUS_5                           26                             65
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(21Q22.3) MUTATED       39     10     68
  DEL PEAK 33(21Q22.3) WILD-TYPE    110     60    128
D62V8, multiclass
        clus
vv       DEL PEAK 33(21Q22.3) MUTATED DEL PEAK 33(21Q22.3) WILD-TYPE
  CLUS_1                           39                            110
  CLUS_2                           10                             60
  CLUS_3                           68                            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(21Q22.3) MUTATED       48     28     41
  DEL PEAK 33(21Q22.3) WILD-TYPE     98     90    110
D62V9, multiclass
        clus
vv       DEL PEAK 33(21Q22.3) MUTATED DEL PEAK 33(21Q22.3) WILD-TYPE
  CLUS_1                           48                             98
  CLUS_2                           28                             90
  CLUS_3                           41                            110
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(21Q22.3) MUTATED       19      4     41     29     24
  DEL PEAK 33(21Q22.3) WILD-TYPE     76     33     84     32     73
D62V10, multiclass
        clus
vv       DEL PEAK 33(21Q22.3) MUTATED DEL PEAK 33(21Q22.3) WILD-TYPE
  CLUS_1                           19                             76
  CLUS_2                            4                             33
  CLUS_3                           41                             84
  CLUS_4                           29                             32
  CLUS_5                           24                             73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
