
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events_Nozzle/broadinstitute.org/cancer.genome.analysis/10466/19/GDAC_Correlate_Genomic_Events_NozzleReport.R")
> result <- create.report.html("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events_Nozzle/broadinstitute.org/cancer.genome.analysis/10466/19/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iF=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events/READ-TP/10014164/analysis.results.RData", "-nV=Nozzle.R1", "-gE=CLI_CNVFOCAL")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                 "NEOPLASM.DISEASESTAGE" 
                                      V4 
                     "PATHOLOGY.T.STAGE" 
                                      V5 
                     "PATHOLOGY.N.STAGE" 
                                      V6 
                     "PATHOLOGY.M.STAGE" 
                                      V7 
                                "GENDER" 
                                      V8 
                     "HISTOLOGICAL.TYPE" 
                                      V9 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                     V10 
             "COMPLETENESS.OF.RESECTION" 
                                     V11 
                 "NUMBER.OF.LYMPH.NODES" 
                                     V12 
                                  "RACE" 
> q(save="no")
