[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oTSARC-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/SARC-TP/10668110/SARC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/SARC-TP/10013795/transformed.cor.cli.txt"

nPatients in clinical file=242, in cluster file=169, common to both=169
[1]  61 169
[1] "AMP PEAK  1(1P32.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE 
                           62                           107 
  AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE 
                           62                           107 
[1] "AMP PEAK  2(1Q24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q24.3) MUTATED AMP PEAK  2(1Q24.3) WILD-TYPE 
                           71                            98 
  AMP PEAK  2(1Q24.3) MUTATED AMP PEAK  2(1Q24.3) WILD-TYPE 
                           71                            98 
[1] "AMP PEAK  3(3P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(3P11.2) MUTATED AMP PEAK  3(3P11.2) WILD-TYPE 
                           40                           129 
  AMP PEAK  3(3P11.2) MUTATED AMP PEAK  3(3P11.2) WILD-TYPE 
                           40                           129 
[1] "AMP PEAK  4(5P15.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(5P15.2) MUTATED AMP PEAK  4(5P15.2) WILD-TYPE 
                           73                            96 
  AMP PEAK  4(5P15.2) MUTATED AMP PEAK  4(5P15.2) WILD-TYPE 
                           73                            96 
[1] "AMP PEAK  5(6P21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE 
                           40                           129 
  AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE 
                           40                           129 
[1] "AMP PEAK  6(6Q24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(6Q24.3) MUTATED AMP PEAK  6(6Q24.3) WILD-TYPE 
                           53                           116 
  AMP PEAK  6(6Q24.3) MUTATED AMP PEAK  6(6Q24.3) WILD-TYPE 
                           53                           116 
[1] "AMP PEAK  7(7Q31.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(7Q31.1) MUTATED AMP PEAK  7(7Q31.1) WILD-TYPE 
                           49                           120 
  AMP PEAK  7(7Q31.1) MUTATED AMP PEAK  7(7Q31.1) WILD-TYPE 
                           49                           120 
[1] "AMP PEAK  8(8Q21.12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(8Q21.12) MUTATED AMP PEAK  8(8Q21.12) WILD-TYPE 
                            61                            108 
  AMP PEAK  8(8Q21.12) MUTATED AMP PEAK  8(8Q21.12) WILD-TYPE 
                            61                            108 
[1] "AMP PEAK  9(11Q22.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(11Q22.2) MUTATED AMP PEAK  9(11Q22.2) WILD-TYPE 
                            26                            143 
  AMP PEAK  9(11Q22.2) MUTATED AMP PEAK  9(11Q22.2) WILD-TYPE 
                            26                            143 
[1] "AMP PEAK 10(12P13.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(12P13.32) MUTATED AMP PEAK 10(12P13.32) WILD-TYPE 
                             32                             137 
  AMP PEAK 10(12P13.32) MUTATED AMP PEAK 10(12P13.32) WILD-TYPE 
                             32                             137 
[1] "AMP PEAK 11(12P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE 
                            42                            127 
  AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE 
                            42                            127 
[1] "AMP PEAK 12(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(12Q15) MUTATED AMP PEAK 12(12Q15) WILD-TYPE 
                          64                          105 
  AMP PEAK 12(12Q15) MUTATED AMP PEAK 12(12Q15) WILD-TYPE 
                          64                          105 
[1] "AMP PEAK 13(13Q34) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(13Q34) MUTATED AMP PEAK 13(13Q34) WILD-TYPE 
                          31                          138 
  AMP PEAK 13(13Q34) MUTATED AMP PEAK 13(13Q34) WILD-TYPE 
                          31                          138 
[1] "AMP PEAK 14(17P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(17P11.2) MUTATED AMP PEAK 14(17P11.2) WILD-TYPE 
                            69                            100 
  AMP PEAK 14(17P11.2) MUTATED AMP PEAK 14(17P11.2) WILD-TYPE 
                            69                            100 
[1] "AMP PEAK 15(17Q24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(17Q24.3) MUTATED AMP PEAK 15(17Q24.3) WILD-TYPE 
                            48                            121 
  AMP PEAK 15(17Q24.3) MUTATED AMP PEAK 15(17Q24.3) WILD-TYPE 
                            48                            121 
[1] "AMP PEAK 16(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(19P13.2) MUTATED AMP PEAK 16(19P13.2) WILD-TYPE 
                            68                            101 
  AMP PEAK 16(19P13.2) MUTATED AMP PEAK 16(19P13.2) WILD-TYPE 
                            68                            101 
[1] "AMP PEAK 17(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(19Q12) MUTATED AMP PEAK 17(19Q12) WILD-TYPE 
                          61                          108 
  AMP PEAK 17(19Q12) MUTATED AMP PEAK 17(19Q12) WILD-TYPE 
                          61                          108 
[1] "AMP PEAK 18(20Q13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(20Q13.33) MUTATED AMP PEAK 18(20Q13.33) WILD-TYPE 
                             68                             101 
  AMP PEAK 18(20Q13.33) MUTATED AMP PEAK 18(20Q13.33) WILD-TYPE 
                             68                             101 
[1] "AMP PEAK 19(21Q21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(21Q21.1) MUTATED AMP PEAK 19(21Q21.1) WILD-TYPE 
                            51                            118 
  AMP PEAK 19(21Q21.1) MUTATED AMP PEAK 19(21Q21.1) WILD-TYPE 
                            51                            118 
[1] "AMP PEAK 20(XP21.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(XP21.2) MUTATED AMP PEAK 20(XP21.2) WILD-TYPE 
                           60                           109 
  AMP PEAK 20(XP21.2) MUTATED AMP PEAK 20(XP21.2) WILD-TYPE 
                           60                           109 
[1] "AMP PEAK 21(XQ21.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(XQ21.2) MUTATED AMP PEAK 21(XQ21.2) WILD-TYPE 
                           25                           144 
  AMP PEAK 21(XQ21.2) MUTATED AMP PEAK 21(XQ21.2) WILD-TYPE 
                           25                           144 
[1] "DEL PEAK  1(1P36.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                            51                            118 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                            51                            118 
[1] "DEL PEAK  2(1P32.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE 
                           26                           143 
  DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE 
                           26                           143 
[1] "DEL PEAK  3(1Q44) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                         53                         116 
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                         53                         116 
[1] "DEL PEAK  4(2P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2P25.3) MUTATED DEL PEAK  4(2P25.3) WILD-TYPE 
                           56                           113 
  DEL PEAK  4(2P25.3) MUTATED DEL PEAK  4(2P25.3) WILD-TYPE 
                           56                           113 
[1] "DEL PEAK  5(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                           68                           101 
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                           68                           101 
[1] "DEL PEAK  6(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(2Q37.3) MUTATED DEL PEAK  6(2Q37.3) WILD-TYPE 
                           70                            99 
  DEL PEAK  6(2Q37.3) MUTATED DEL PEAK  6(2Q37.3) WILD-TYPE 
                           70                            99 
[1] "DEL PEAK  7(3P21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3P21.31) MUTATED DEL PEAK  7(3P21.31) WILD-TYPE 
                            37                            132 
  DEL PEAK  7(3P21.31) MUTATED DEL PEAK  7(3P21.31) WILD-TYPE 
                            37                            132 
[1] "DEL PEAK  8(3Q29) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE 
                         39                         130 
  DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE 
                         39                         130 
[1] "DEL PEAK  9(4Q35.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE 
                           63                           106 
  DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE 
                           63                           106 
[1] "DEL PEAK 10(6P25.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(6P25.1) MUTATED DEL PEAK 10(6P25.1) WILD-TYPE 
                           61                           108 
  DEL PEAK 10(6P25.1) MUTATED DEL PEAK 10(6P25.1) WILD-TYPE 
                           61                           108 
[1] "DEL PEAK 11(6Q14.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(6Q14.1) MUTATED DEL PEAK 11(6Q14.1) WILD-TYPE 
                           49                           120 
  DEL PEAK 11(6Q14.1) MUTATED DEL PEAK 11(6Q14.1) WILD-TYPE 
                           49                           120 
[1] "DEL PEAK 12(6Q16.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(6Q16.1) MUTATED DEL PEAK 12(6Q16.1) WILD-TYPE 
                           48                           121 
  DEL PEAK 12(6Q16.1) MUTATED DEL PEAK 12(6Q16.1) WILD-TYPE 
                           48                           121 
[1] "DEL PEAK 13(7Q36.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE 
                           44                           125 
  DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE 
                           44                           125 
[1] "DEL PEAK 14(8P23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE 
                           52                           117 
  DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE 
                           52                           117 
[1] "DEL PEAK 15(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE 
                         58                         111 
  DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE 
                         58                         111 
[1] "DEL PEAK 16(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE 
                           72                            97 
  DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE 
                           72                            97 
[1] "DEL PEAK 17(9Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE 
                           46                           123 
  DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE 
                           46                           123 
[1] "DEL PEAK 18(10P15.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE 
                            88                             81 
  DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE 
                            88                             81 
[1] "DEL PEAK 19(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE 
                             95                              74 
  DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE 
                             95                              74 
[1] "DEL PEAK 20(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE 
                            73                             96 
  DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE 
                            73                             96 
[1] "DEL PEAK 21(11Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(11Q24.3) MUTATED DEL PEAK 21(11Q24.3) WILD-TYPE 
                            75                             94 
  DEL PEAK 21(11Q24.3) MUTATED DEL PEAK 21(11Q24.3) WILD-TYPE 
                            75                             94 
[1] "DEL PEAK 22(12P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(12P13.1) MUTATED DEL PEAK 22(12P13.1) WILD-TYPE 
                            57                            112 
  DEL PEAK 22(12P13.1) MUTATED DEL PEAK 22(12P13.1) WILD-TYPE 
                            57                            112 
[1] "DEL PEAK 23(12Q12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(12Q12) MUTATED DEL PEAK 23(12Q12) WILD-TYPE 
                          34                          135 
  DEL PEAK 23(12Q12) MUTATED DEL PEAK 23(12Q12) WILD-TYPE 
                          34                          135 
[1] "DEL PEAK 24(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE 
                           121                             48 
  DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE 
                           121                             48 
[1] "DEL PEAK 25(14Q24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(14Q24.1) MUTATED DEL PEAK 25(14Q24.1) WILD-TYPE 
                            56                            113 
  DEL PEAK 25(14Q24.1) MUTATED DEL PEAK 25(14Q24.1) WILD-TYPE 
                            56                            113 
[1] "DEL PEAK 26(15Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(15Q11.2) MUTATED DEL PEAK 26(15Q11.2) WILD-TYPE 
                            32                            137 
  DEL PEAK 26(15Q11.2) MUTATED DEL PEAK 26(15Q11.2) WILD-TYPE 
                            32                            137 
[1] "DEL PEAK 27(16Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(16Q12.1) MUTATED DEL PEAK 27(16Q12.1) WILD-TYPE 
                            95                             74 
  DEL PEAK 27(16Q12.1) MUTATED DEL PEAK 27(16Q12.1) WILD-TYPE 
                            95                             74 
[1] "DEL PEAK 28(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(16Q23.1) MUTATED DEL PEAK 28(16Q23.1) WILD-TYPE 
                            94                             75 
  DEL PEAK 28(16Q23.1) MUTATED DEL PEAK 28(16Q23.1) WILD-TYPE 
                            94                             75 
[1] "DEL PEAK 29(17P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(17P13.1) MUTATED DEL PEAK 29(17P13.1) WILD-TYPE 
                            82                             87 
  DEL PEAK 29(17P13.1) MUTATED DEL PEAK 29(17P13.1) WILD-TYPE 
                            82                             87 
[1] "DEL PEAK 30(17Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(17Q11.2) MUTATED DEL PEAK 30(17Q11.2) WILD-TYPE 
                            51                            118 
  DEL PEAK 30(17Q11.2) MUTATED DEL PEAK 30(17Q11.2) WILD-TYPE 
                            51                            118 
[1] "DEL PEAK 31(17Q25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(17Q25.3) MUTATED DEL PEAK 31(17Q25.3) WILD-TYPE 
                            45                            124 
  DEL PEAK 31(17Q25.3) MUTATED DEL PEAK 31(17Q25.3) WILD-TYPE 
                            45                            124 
[1] "DEL PEAK 32(18Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE 
                          57                          112 
  DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE 
                          57                          112 
[1] "DEL PEAK 33(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE 
                            50                            119 
  DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE 
                            50                            119 
[1] "DEL PEAK 34(19Q13.43) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(19Q13.43) MUTATED DEL PEAK 34(19Q13.43) WILD-TYPE 
                             73                              96 
  DEL PEAK 34(19Q13.43) MUTATED DEL PEAK 34(19Q13.43) WILD-TYPE 
                             73                              96 
[1] "DEL PEAK 35(21Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(21Q11.2) MUTATED DEL PEAK 35(21Q11.2) WILD-TYPE 
                            31                            138 
  DEL PEAK 35(21Q11.2) MUTATED DEL PEAK 35(21Q11.2) WILD-TYPE 
                            31                            138 
[1] "DEL PEAK 36(21Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(21Q22.3) MUTATED DEL PEAK 36(21Q22.3) WILD-TYPE 
                            44                            125 
  DEL PEAK 36(21Q22.3) MUTATED DEL PEAK 36(21Q22.3) WILD-TYPE 
                            44                            125 
[1] "DEL PEAK 37(22Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(22Q13.31) MUTATED DEL PEAK 37(22Q13.31) WILD-TYPE 
                             54                             115 
  DEL PEAK 37(22Q13.31) MUTATED DEL PEAK 37(22Q13.31) WILD-TYPE 
                             54                             115 
[1] "DEL PEAK 38(XP22.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(XP22.33) MUTATED DEL PEAK 38(XP22.33) WILD-TYPE 
                            54                            115 
  DEL PEAK 38(XP22.33) MUTATED DEL PEAK 38(XP22.33) WILD-TYPE 
                            54                            115 
[1] "DEL PEAK 39(XQ21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(XQ21.1) MUTATED DEL PEAK 39(XQ21.1) WILD-TYPE 
                           80                            89 
  DEL PEAK 39(XQ21.1) MUTATED DEL PEAK 39(XQ21.1) WILD-TYPE 
                           80                            89 
[1] "DEL PEAK 40(XQ27.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(XQ27.1) MUTATED DEL PEAK 40(XQ27.1) WILD-TYPE 
                           82                            87 
  DEL PEAK 40(XQ27.1) MUTATED DEL PEAK 40(XQ27.1) WILD-TYPE 
                           82                            87 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 8 rows and 169 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 169 columns, 0 survival variables, and 8 non-survival variables.
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=7, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P32.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P32.1) MUTATED       17     37      8
  AMP PEAK  1(1P32.1) WILD-TYPE     29     29     49
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                          17                            29
  CLUS_2                          37                            29
  CLUS_3                           8                            49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P32.1) MUTATED       10     10     10      3      2     24
  AMP PEAK  1(1P32.1) WILD-TYPE     20     18     32     18     14      4
                               vv
clus                            CLUS_7
  AMP PEAK  1(1P32.1) MUTATED        3
  AMP PEAK  1(1P32.1) WILD-TYPE      1
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                          10                            20
  CLUS_2                          10                            18
  CLUS_3                          10                            32
  CLUS_4                           3                            18
  CLUS_5                           2                            14
  CLUS_6                          24                             4
  CLUS_7                           3                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P32.1) MUTATED       27     15      6     13
  AMP PEAK  1(1P32.1) WILD-TYPE     12     30     18     45
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                          27                            12
  CLUS_2                          15                            30
  CLUS_3                           6                            18
  CLUS_4                          13                            45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P32.1) MUTATED       17      6     25      9      4
  AMP PEAK  1(1P32.1) WILD-TYPE     28     26      8     28     15
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                          17                            28
  CLUS_2                           6                            26
  CLUS_3                          25                             8
  CLUS_4                           9                            28
  CLUS_5                           4                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P32.1) MUTATED       32     16     12
  AMP PEAK  1(1P32.1) WILD-TYPE     41     55     11
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                          32                            41
  CLUS_2                          16                            55
  CLUS_3                          12                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P32.1) MUTATED       26      4     15      3     12
  AMP PEAK  1(1P32.1) WILD-TYPE     26     10     14      9     48
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                          26                            26
  CLUS_2                           4                            10
  CLUS_3                          15                            14
  CLUS_4                           3                             9
  CLUS_5                          12                            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P32.1) MUTATED       32     17     11
  AMP PEAK  1(1P32.1) WILD-TYPE     37     54     16
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                          32                            37
  CLUS_2                          17                            54
  CLUS_3                          11                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P32.1) MUTATED       27     16     17
  AMP PEAK  1(1P32.1) WILD-TYPE     35     56     16
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  CLUS_1                          27                            35
  CLUS_2                          16                            56
  CLUS_3                          17                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1Q24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q24.3) MUTATED       22     39     10
  AMP PEAK  2(1Q24.3) WILD-TYPE     24     27     47
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q24.3) MUTATED AMP PEAK  2(1Q24.3) WILD-TYPE
  CLUS_1                          22                            24
  CLUS_2                          39                            27
  CLUS_3                          10                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1Q24.3) MUTATED       14      8     13      8      4     21
  AMP PEAK  2(1Q24.3) WILD-TYPE     16     20     29     13     12      7
                               vv
clus                            CLUS_7
  AMP PEAK  2(1Q24.3) MUTATED        3
  AMP PEAK  2(1Q24.3) WILD-TYPE      1
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q24.3) MUTATED AMP PEAK  2(1Q24.3) WILD-TYPE
  CLUS_1                          14                            16
  CLUS_2                           8                            20
  CLUS_3                          13                            29
  CLUS_4                           8                            13
  CLUS_5                           4                            12
  CLUS_6                          21                             7
  CLUS_7                           3                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q24.3) MUTATED       23     18      9     20
  AMP PEAK  2(1Q24.3) WILD-TYPE     16     27     15     38
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q24.3) MUTATED AMP PEAK  2(1Q24.3) WILD-TYPE
  CLUS_1                          23                            16
  CLUS_2                          18                            27
  CLUS_3                           9                            15
  CLUS_4                          20                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q24.3) MUTATED       17     11     22     11      9
  AMP PEAK  2(1Q24.3) WILD-TYPE     28     21     11     26     10
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q24.3) MUTATED AMP PEAK  2(1Q24.3) WILD-TYPE
  CLUS_1                          17                            28
  CLUS_2                          11                            21
  CLUS_3                          22                            11
  CLUS_4                          11                            26
  CLUS_5                           9                            10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q24.3) MUTATED       35     25      9
  AMP PEAK  2(1Q24.3) WILD-TYPE     38     46     14
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q24.3) MUTATED AMP PEAK  2(1Q24.3) WILD-TYPE
  CLUS_1                          35                            38
  CLUS_2                          25                            46
  CLUS_3                           9                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q24.3) MUTATED       28      6     12      4     19
  AMP PEAK  2(1Q24.3) WILD-TYPE     24      8     17      8     41
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q24.3) MUTATED AMP PEAK  2(1Q24.3) WILD-TYPE
  CLUS_1                          28                            24
  CLUS_2                           6                             8
  CLUS_3                          12                            17
  CLUS_4                           4                             8
  CLUS_5                          19                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q24.3) MUTATED       34     26      9
  AMP PEAK  2(1Q24.3) WILD-TYPE     35     45     18
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q24.3) MUTATED AMP PEAK  2(1Q24.3) WILD-TYPE
  CLUS_1                          34                            35
  CLUS_2                          26                            45
  CLUS_3                           9                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q24.3) MUTATED       30     25     14
  AMP PEAK  2(1Q24.3) WILD-TYPE     32     47     19
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q24.3) MUTATED AMP PEAK  2(1Q24.3) WILD-TYPE
  CLUS_1                          30                            32
  CLUS_2                          25                            47
  CLUS_3                          14                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(3P11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3P11.2) MUTATED        7     24      9
  AMP PEAK  3(3P11.2) WILD-TYPE     39     42     48
D3V1, multiclass
        clus
vv       AMP PEAK  3(3P11.2) MUTATED AMP PEAK  3(3P11.2) WILD-TYPE
  CLUS_1                           7                            39
  CLUS_2                          24                            42
  CLUS_3                           9                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(3P11.2) MUTATED        9      9     10      2      0     10
  AMP PEAK  3(3P11.2) WILD-TYPE     21     19     32     19     16     18
                               vv
clus                            CLUS_7
  AMP PEAK  3(3P11.2) MUTATED        0
  AMP PEAK  3(3P11.2) WILD-TYPE      4
D3V2, multiclass
        clus
vv       AMP PEAK  3(3P11.2) MUTATED AMP PEAK  3(3P11.2) WILD-TYPE
  CLUS_1                           9                            21
  CLUS_2                           9                            19
  CLUS_3                          10                            32
  CLUS_4                           2                            19
  CLUS_5                           0                            16
  CLUS_6                          10                            18
  CLUS_7                           0                             4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(3P11.2) MUTATED       17     10      2     10
  AMP PEAK  3(3P11.2) WILD-TYPE     22     35     22     48
D3V3, multiclass
        clus
vv       AMP PEAK  3(3P11.2) MUTATED AMP PEAK  3(3P11.2) WILD-TYPE
  CLUS_1                          17                            22
  CLUS_2                          10                            35
  CLUS_3                           2                            22
  CLUS_4                          10                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(3P11.2) MUTATED       13      2     14      9      1
  AMP PEAK  3(3P11.2) WILD-TYPE     32     30     19     28     18
D3V4, multiclass
        clus
vv       AMP PEAK  3(3P11.2) MUTATED AMP PEAK  3(3P11.2) WILD-TYPE
  CLUS_1                          13                            32
  CLUS_2                           2                            30
  CLUS_3                          14                            19
  CLUS_4                           9                            28
  CLUS_5                           1                            18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3P11.2) MUTATED       19     14      7
  AMP PEAK  3(3P11.2) WILD-TYPE     54     57     16
D3V5, multiclass
        clus
vv       AMP PEAK  3(3P11.2) MUTATED AMP PEAK  3(3P11.2) WILD-TYPE
  CLUS_1                          19                            54
  CLUS_2                          14                            57
  CLUS_3                           7                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(3P11.2) MUTATED       18      4      8      0     10
  AMP PEAK  3(3P11.2) WILD-TYPE     34     10     21     12     50
D3V6, multiclass
        clus
vv       AMP PEAK  3(3P11.2) MUTATED AMP PEAK  3(3P11.2) WILD-TYPE
  CLUS_1                          18                            34
  CLUS_2                           4                            10
  CLUS_3                           8                            21
  CLUS_4                           0                            12
  CLUS_5                          10                            50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3P11.2) MUTATED       18     13      9
  AMP PEAK  3(3P11.2) WILD-TYPE     51     58     18
D3V7, multiclass
        clus
vv       AMP PEAK  3(3P11.2) MUTATED AMP PEAK  3(3P11.2) WILD-TYPE
  CLUS_1                          18                            51
  CLUS_2                          13                            58
  CLUS_3                           9                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(3P11.2) MUTATED       15     14     11
  AMP PEAK  3(3P11.2) WILD-TYPE     47     58     22
D3V8, multiclass
        clus
vv       AMP PEAK  3(3P11.2) MUTATED AMP PEAK  3(3P11.2) WILD-TYPE
  CLUS_1                          15                            47
  CLUS_2                          14                            58
  CLUS_3                          11                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(5P15.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5P15.2) MUTATED       18     41     14
  AMP PEAK  4(5P15.2) WILD-TYPE     28     25     43
D4V1, multiclass
        clus
vv       AMP PEAK  4(5P15.2) MUTATED AMP PEAK  4(5P15.2) WILD-TYPE
  CLUS_1                          18                            28
  CLUS_2                          41                            25
  CLUS_3                          14                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(5P15.2) MUTATED       17     13     17      7      1     17
  AMP PEAK  4(5P15.2) WILD-TYPE     13     15     25     14     15     11
                               vv
clus                            CLUS_7
  AMP PEAK  4(5P15.2) MUTATED        1
  AMP PEAK  4(5P15.2) WILD-TYPE      3
D4V2, multiclass
        clus
vv       AMP PEAK  4(5P15.2) MUTATED AMP PEAK  4(5P15.2) WILD-TYPE
  CLUS_1                          17                            13
  CLUS_2                          13                            15
  CLUS_3                          17                            25
  CLUS_4                           7                            14
  CLUS_5                           1                            15
  CLUS_6                          17                            11
  CLUS_7                           1                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(5P15.2) MUTATED       25     21      8     19
  AMP PEAK  4(5P15.2) WILD-TYPE     14     24     16     39
D4V3, multiclass
        clus
vv       AMP PEAK  4(5P15.2) MUTATED AMP PEAK  4(5P15.2) WILD-TYPE
  CLUS_1                          25                            14
  CLUS_2                          21                            24
  CLUS_3                           8                            16
  CLUS_4                          19                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(5P15.2) MUTATED       27      8     19     17      2
  AMP PEAK  4(5P15.2) WILD-TYPE     18     24     14     20     17
D4V4, multiclass
        clus
vv       AMP PEAK  4(5P15.2) MUTATED AMP PEAK  4(5P15.2) WILD-TYPE
  CLUS_1                          27                            18
  CLUS_2                           8                            24
  CLUS_3                          19                            14
  CLUS_4                          17                            20
  CLUS_5                           2                            17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5P15.2) MUTATED       33     29     10
  AMP PEAK  4(5P15.2) WILD-TYPE     40     42     13
D4V5, multiclass
        clus
vv       AMP PEAK  4(5P15.2) MUTATED AMP PEAK  4(5P15.2) WILD-TYPE
  CLUS_1                          33                            40
  CLUS_2                          29                            42
  CLUS_3                          10                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(5P15.2) MUTATED       26     10     13      4     19
  AMP PEAK  4(5P15.2) WILD-TYPE     26      4     16      8     41
D4V6, multiclass
        clus
vv       AMP PEAK  4(5P15.2) MUTATED AMP PEAK  4(5P15.2) WILD-TYPE
  CLUS_1                          26                            26
  CLUS_2                          10                             4
  CLUS_3                          13                            16
  CLUS_4                           4                             8
  CLUS_5                          19                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5P15.2) MUTATED       32     28     12
  AMP PEAK  4(5P15.2) WILD-TYPE     37     43     15
D4V7, multiclass
        clus
vv       AMP PEAK  4(5P15.2) MUTATED AMP PEAK  4(5P15.2) WILD-TYPE
  CLUS_1                          32                            37
  CLUS_2                          28                            43
  CLUS_3                          12                            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(5P15.2) MUTATED       28     29     15
  AMP PEAK  4(5P15.2) WILD-TYPE     34     43     18
D4V8, multiclass
        clus
vv       AMP PEAK  4(5P15.2) MUTATED AMP PEAK  4(5P15.2) WILD-TYPE
  CLUS_1                          28                            34
  CLUS_2                          29                            43
  CLUS_3                          15                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(6P21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(6P21.1) MUTATED       11     26      3
  AMP PEAK  5(6P21.1) WILD-TYPE     35     40     54
D5V1, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          11                            35
  CLUS_2                          26                            40
  CLUS_3                           3                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(6P21.1) MUTATED       13      5      2      5      0     12
  AMP PEAK  5(6P21.1) WILD-TYPE     17     23     40     16     16     16
                               vv
clus                            CLUS_7
  AMP PEAK  5(6P21.1) MUTATED        3
  AMP PEAK  5(6P21.1) WILD-TYPE      1
D5V2, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          13                            17
  CLUS_2                           5                            23
  CLUS_3                           2                            40
  CLUS_4                           5                            16
  CLUS_5                           0                            16
  CLUS_6                          12                            16
  CLUS_7                           3                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(6P21.1) MUTATED       13     16      7      4
  AMP PEAK  5(6P21.1) WILD-TYPE     26     29     17     54
D5V3, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          13                            26
  CLUS_2                          16                            29
  CLUS_3                           7                            17
  CLUS_4                           4                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(6P21.1) MUTATED       16      8     12      1      3
  AMP PEAK  5(6P21.1) WILD-TYPE     29     24     21     36     16
D5V4, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          16                            29
  CLUS_2                           8                            24
  CLUS_3                          12                            21
  CLUS_4                           1                            36
  CLUS_5                           3                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(6P21.1) MUTATED       22      8      9
  AMP PEAK  5(6P21.1) WILD-TYPE     51     63     14
D5V5, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          22                            51
  CLUS_2                           8                            63
  CLUS_3                           9                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(6P21.1) MUTATED       19      4     10      3      3
  AMP PEAK  5(6P21.1) WILD-TYPE     33     10     19      9     57
D5V6, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          19                            33
  CLUS_2                           4                            10
  CLUS_3                          10                            19
  CLUS_4                           3                             9
  CLUS_5                           3                            57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(6P21.1) MUTATED       22      7     10
  AMP PEAK  5(6P21.1) WILD-TYPE     47     64     17
D5V7, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          22                            47
  CLUS_2                           7                            64
  CLUS_3                          10                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(6P21.1) MUTATED       21      7     11
  AMP PEAK  5(6P21.1) WILD-TYPE     41     65     22
D5V8, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          21                            41
  CLUS_2                           7                            65
  CLUS_3                          11                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(6Q24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(6Q24.3) MUTATED       21     26      6
  AMP PEAK  6(6Q24.3) WILD-TYPE     25     40     51
D6V1, multiclass
        clus
vv       AMP PEAK  6(6Q24.3) MUTATED AMP PEAK  6(6Q24.3) WILD-TYPE
  CLUS_1                          21                            25
  CLUS_2                          26                            40
  CLUS_3                           6                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(6Q24.3) MUTATED       21     12      3      3      1     12
  AMP PEAK  6(6Q24.3) WILD-TYPE      9     16     39     18     15     16
                               vv
clus                            CLUS_7
  AMP PEAK  6(6Q24.3) MUTATED        1
  AMP PEAK  6(6Q24.3) WILD-TYPE      3
D6V2, multiclass
        clus
vv       AMP PEAK  6(6Q24.3) MUTATED AMP PEAK  6(6Q24.3) WILD-TYPE
  CLUS_1                          21                             9
  CLUS_2                          12                            16
  CLUS_3                           3                            39
  CLUS_4                           3                            18
  CLUS_5                           1                            15
  CLUS_6                          12                            16
  CLUS_7                           1                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(6Q24.3) MUTATED       15     28      5      4
  AMP PEAK  6(6Q24.3) WILD-TYPE     24     17     19     54
D6V3, multiclass
        clus
vv       AMP PEAK  6(6Q24.3) MUTATED AMP PEAK  6(6Q24.3) WILD-TYPE
  CLUS_1                          15                            24
  CLUS_2                          28                            17
  CLUS_3                           5                            19
  CLUS_4                           4                            54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(6Q24.3) MUTATED       27      9     12      2      2
  AMP PEAK  6(6Q24.3) WILD-TYPE     18     23     21     35     17
D6V4, multiclass
        clus
vv       AMP PEAK  6(6Q24.3) MUTATED AMP PEAK  6(6Q24.3) WILD-TYPE
  CLUS_1                          27                            18
  CLUS_2                           9                            23
  CLUS_3                          12                            21
  CLUS_4                           2                            35
  CLUS_5                           2                            17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(6Q24.3) MUTATED       32     10     11
  AMP PEAK  6(6Q24.3) WILD-TYPE     41     61     12
D6V5, multiclass
        clus
vv       AMP PEAK  6(6Q24.3) MUTATED AMP PEAK  6(6Q24.3) WILD-TYPE
  CLUS_1                          32                            41
  CLUS_2                          10                            61
  CLUS_3                          11                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(6Q24.3) MUTATED       27      7     12      3      4
  AMP PEAK  6(6Q24.3) WILD-TYPE     25      7     17      9     56
D6V6, multiclass
        clus
vv       AMP PEAK  6(6Q24.3) MUTATED AMP PEAK  6(6Q24.3) WILD-TYPE
  CLUS_1                          27                            25
  CLUS_2                           7                             7
  CLUS_3                          12                            17
  CLUS_4                           3                             9
  CLUS_5                           4                            56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(6Q24.3) MUTATED       31      8     14
  AMP PEAK  6(6Q24.3) WILD-TYPE     38     63     13
D6V7, multiclass
        clus
vv       AMP PEAK  6(6Q24.3) MUTATED AMP PEAK  6(6Q24.3) WILD-TYPE
  CLUS_1                          31                            38
  CLUS_2                           8                            63
  CLUS_3                          14                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(6Q24.3) MUTATED       28     11     14
  AMP PEAK  6(6Q24.3) WILD-TYPE     34     61     19
D6V8, multiclass
        clus
vv       AMP PEAK  6(6Q24.3) MUTATED AMP PEAK  6(6Q24.3) WILD-TYPE
  CLUS_1                          28                            34
  CLUS_2                          11                            61
  CLUS_3                          14                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(7Q31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7Q31.1) MUTATED       14     28      7
  AMP PEAK  7(7Q31.1) WILD-TYPE     32     38     50
D7V1, multiclass
        clus
vv       AMP PEAK  7(7Q31.1) MUTATED AMP PEAK  7(7Q31.1) WILD-TYPE
  CLUS_1                          14                            32
  CLUS_2                          28                            38
  CLUS_3                           7                            50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(7Q31.1) MUTATED       15      7      8      5      1     11
  AMP PEAK  7(7Q31.1) WILD-TYPE     15     21     34     16     15     17
                               vv
clus                            CLUS_7
  AMP PEAK  7(7Q31.1) MUTATED        2
  AMP PEAK  7(7Q31.1) WILD-TYPE      2
D7V2, multiclass
        clus
vv       AMP PEAK  7(7Q31.1) MUTATED AMP PEAK  7(7Q31.1) WILD-TYPE
  CLUS_1                          15                            15
  CLUS_2                           7                            21
  CLUS_3                           8                            34
  CLUS_4                           5                            16
  CLUS_5                           1                            15
  CLUS_6                          11                            17
  CLUS_7                           2                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(7Q31.1) MUTATED       14     18      7     10
  AMP PEAK  7(7Q31.1) WILD-TYPE     25     27     17     48
D7V3, multiclass
        clus
vv       AMP PEAK  7(7Q31.1) MUTATED AMP PEAK  7(7Q31.1) WILD-TYPE
  CLUS_1                          14                            25
  CLUS_2                          18                            27
  CLUS_3                           7                            17
  CLUS_4                          10                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(7Q31.1) MUTATED       18      8     12      7      4
  AMP PEAK  7(7Q31.1) WILD-TYPE     27     24     21     30     15
D7V4, multiclass
        clus
vv       AMP PEAK  7(7Q31.1) MUTATED AMP PEAK  7(7Q31.1) WILD-TYPE
  CLUS_1                          18                            27
  CLUS_2                           8                            24
  CLUS_3                          12                            21
  CLUS_4                           7                            30
  CLUS_5                           4                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7Q31.1) MUTATED       20     17     12
  AMP PEAK  7(7Q31.1) WILD-TYPE     53     54     11
D7V5, multiclass
        clus
vv       AMP PEAK  7(7Q31.1) MUTATED AMP PEAK  7(7Q31.1) WILD-TYPE
  CLUS_1                          20                            53
  CLUS_2                          17                            54
  CLUS_3                          12                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(7Q31.1) MUTATED       17      5     15      1     11
  AMP PEAK  7(7Q31.1) WILD-TYPE     35      9     14     11     49
D7V6, multiclass
        clus
vv       AMP PEAK  7(7Q31.1) MUTATED AMP PEAK  7(7Q31.1) WILD-TYPE
  CLUS_1                          17                            35
  CLUS_2                           5                             9
  CLUS_3                          15                            14
  CLUS_4                           1                            11
  CLUS_5                          11                            49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7Q31.1) MUTATED       19     16     14
  AMP PEAK  7(7Q31.1) WILD-TYPE     50     55     13
D7V7, multiclass
        clus
vv       AMP PEAK  7(7Q31.1) MUTATED AMP PEAK  7(7Q31.1) WILD-TYPE
  CLUS_1                          19                            50
  CLUS_2                          16                            55
  CLUS_3                          14                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(7Q31.1) MUTATED       16     15     18
  AMP PEAK  7(7Q31.1) WILD-TYPE     46     57     15
D7V8, multiclass
        clus
vv       AMP PEAK  7(7Q31.1) MUTATED AMP PEAK  7(7Q31.1) WILD-TYPE
  CLUS_1                          16                            46
  CLUS_2                          15                            57
  CLUS_3                          18                            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(8Q21.12) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q21.12) MUTATED       17     30     14
  AMP PEAK  8(8Q21.12) WILD-TYPE     29     36     43
D8V1, multiclass
        clus
vv       AMP PEAK  8(8Q21.12) MUTATED AMP PEAK  8(8Q21.12) WILD-TYPE
  CLUS_1                           17                             29
  CLUS_2                           30                             36
  CLUS_3                           14                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(8Q21.12) MUTATED       10      9     14      8      2     14
  AMP PEAK  8(8Q21.12) WILD-TYPE     20     19     28     13     14     14
                                vv
clus                             CLUS_7
  AMP PEAK  8(8Q21.12) MUTATED        4
  AMP PEAK  8(8Q21.12) WILD-TYPE      0
D8V2, multiclass
        clus
vv       AMP PEAK  8(8Q21.12) MUTATED AMP PEAK  8(8Q21.12) WILD-TYPE
  CLUS_1                           10                             20
  CLUS_2                            9                             19
  CLUS_3                           14                             28
  CLUS_4                            8                             13
  CLUS_5                            2                             14
  CLUS_6                           14                             14
  CLUS_7                            4                              0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(8Q21.12) MUTATED       19     15     10     17
  AMP PEAK  8(8Q21.12) WILD-TYPE     20     30     14     41
D8V3, multiclass
        clus
vv       AMP PEAK  8(8Q21.12) MUTATED AMP PEAK  8(8Q21.12) WILD-TYPE
  CLUS_1                           19                             20
  CLUS_2                           15                             30
  CLUS_3                           10                             14
  CLUS_4                           17                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(8Q21.12) MUTATED       17     13     14     13      4
  AMP PEAK  8(8Q21.12) WILD-TYPE     28     19     19     24     15
D8V4, multiclass
        clus
vv       AMP PEAK  8(8Q21.12) MUTATED AMP PEAK  8(8Q21.12) WILD-TYPE
  CLUS_1                           17                             28
  CLUS_2                           13                             19
  CLUS_3                           14                             19
  CLUS_4                           13                             24
  CLUS_5                            4                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q21.12) MUTATED       26     25      8
  AMP PEAK  8(8Q21.12) WILD-TYPE     47     46     15
D8V5, multiclass
        clus
vv       AMP PEAK  8(8Q21.12) MUTATED AMP PEAK  8(8Q21.12) WILD-TYPE
  CLUS_1                           26                             47
  CLUS_2                           25                             46
  CLUS_3                            8                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(8Q21.12) MUTATED       18     10     11      4     16
  AMP PEAK  8(8Q21.12) WILD-TYPE     34      4     18      8     44
D8V6, multiclass
        clus
vv       AMP PEAK  8(8Q21.12) MUTATED AMP PEAK  8(8Q21.12) WILD-TYPE
  CLUS_1                           18                             34
  CLUS_2                           10                              4
  CLUS_3                           11                             18
  CLUS_4                            4                              8
  CLUS_5                           16                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q21.12) MUTATED       23     24     12
  AMP PEAK  8(8Q21.12) WILD-TYPE     46     47     15
D8V7, multiclass
        clus
vv       AMP PEAK  8(8Q21.12) MUTATED AMP PEAK  8(8Q21.12) WILD-TYPE
  CLUS_1                           23                             46
  CLUS_2                           24                             47
  CLUS_3                           12                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(8Q21.12) MUTATED       21     26     12
  AMP PEAK  8(8Q21.12) WILD-TYPE     41     46     21
D8V8, multiclass
        clus
vv       AMP PEAK  8(8Q21.12) MUTATED AMP PEAK  8(8Q21.12) WILD-TYPE
  CLUS_1                           21                             41
  CLUS_2                           26                             46
  CLUS_3                           12                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(11Q22.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(11Q22.2) MUTATED       12      9      5
  AMP PEAK  9(11Q22.2) WILD-TYPE     34     57     52
D9V1, multiclass
        clus
vv       AMP PEAK  9(11Q22.2) MUTATED AMP PEAK  9(11Q22.2) WILD-TYPE
  CLUS_1                           12                             34
  CLUS_2                            9                             57
  CLUS_3                            5                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(11Q22.2) MUTATED        6      5      3      1      1      9
  AMP PEAK  9(11Q22.2) WILD-TYPE     24     23     39     20     15     19
                                vv
clus                             CLUS_7
  AMP PEAK  9(11Q22.2) MUTATED        1
  AMP PEAK  9(11Q22.2) WILD-TYPE      3
D9V2, multiclass
        clus
vv       AMP PEAK  9(11Q22.2) MUTATED AMP PEAK  9(11Q22.2) WILD-TYPE
  CLUS_1                            6                             24
  CLUS_2                            5                             23
  CLUS_3                            3                             39
  CLUS_4                            1                             20
  CLUS_5                            1                             15
  CLUS_6                            9                             19
  CLUS_7                            1                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(11Q22.2) MUTATED        8     13      1      4
  AMP PEAK  9(11Q22.2) WILD-TYPE     31     32     23     54
D9V3, multiclass
        clus
vv       AMP PEAK  9(11Q22.2) MUTATED AMP PEAK  9(11Q22.2) WILD-TYPE
  CLUS_1                            8                             31
  CLUS_2                           13                             32
  CLUS_3                            1                             23
  CLUS_4                            4                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(11Q22.2) MUTATED       10      4      8      2      2
  AMP PEAK  9(11Q22.2) WILD-TYPE     35     28     25     35     17
D9V4, multiclass
        clus
vv       AMP PEAK  9(11Q22.2) MUTATED AMP PEAK  9(11Q22.2) WILD-TYPE
  CLUS_1                           10                             35
  CLUS_2                            4                             28
  CLUS_3                            8                             25
  CLUS_4                            2                             35
  CLUS_5                            2                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(11Q22.2) MUTATED       16      7      3
  AMP PEAK  9(11Q22.2) WILD-TYPE     57     64     20
D9V5, multiclass
        clus
vv       AMP PEAK  9(11Q22.2) MUTATED AMP PEAK  9(11Q22.2) WILD-TYPE
  CLUS_1                           16                             57
  CLUS_2                            7                             64
  CLUS_3                            3                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(11Q22.2) MUTATED       14      3      5      0      4
  AMP PEAK  9(11Q22.2) WILD-TYPE     38     11     24     12     56
D9V6, multiclass
        clus
vv       AMP PEAK  9(11Q22.2) MUTATED AMP PEAK  9(11Q22.2) WILD-TYPE
  CLUS_1                           14                             38
  CLUS_2                            3                             11
  CLUS_3                            5                             24
  CLUS_4                            0                             12
  CLUS_5                            4                             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(11Q22.2) MUTATED       16      7      3
  AMP PEAK  9(11Q22.2) WILD-TYPE     53     64     24
D9V7, multiclass
        clus
vv       AMP PEAK  9(11Q22.2) MUTATED AMP PEAK  9(11Q22.2) WILD-TYPE
  CLUS_1                           16                             53
  CLUS_2                            7                             64
  CLUS_3                            3                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(11Q22.2) MUTATED       14      7      5
  AMP PEAK  9(11Q22.2) WILD-TYPE     48     65     28
D9V8, multiclass
        clus
vv       AMP PEAK  9(11Q22.2) MUTATED AMP PEAK  9(11Q22.2) WILD-TYPE
  CLUS_1                           14                             48
  CLUS_2                            7                             65
  CLUS_3                            5                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(12P13.32) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(12P13.32) MUTATED       13     13      6
  AMP PEAK 10(12P13.32) WILD-TYPE     33     53     51
D10V1, multiclass
        clus
vv       AMP PEAK 10(12P13.32) MUTATED AMP PEAK 10(12P13.32) WILD-TYPE
  CLUS_1                            13                              33
  CLUS_2                            13                              53
  CLUS_3                             6                              51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(12P13.32) MUTATED        7      8      4      5      2      6
  AMP PEAK 10(12P13.32) WILD-TYPE     23     20     38     16     14     22
                                 vv
clus                              CLUS_7
  AMP PEAK 10(12P13.32) MUTATED        0
  AMP PEAK 10(12P13.32) WILD-TYPE      4
D10V2, multiclass
        clus
vv       AMP PEAK 10(12P13.32) MUTATED AMP PEAK 10(12P13.32) WILD-TYPE
  CLUS_1                             7                              23
  CLUS_2                             8                              20
  CLUS_3                             4                              38
  CLUS_4                             5                              16
  CLUS_5                             2                              14
  CLUS_6                             6                              22
  CLUS_7                             0                               4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(12P13.32) MUTATED        9      9      7      6
  AMP PEAK 10(12P13.32) WILD-TYPE     30     36     17     52
D10V3, multiclass
        clus
vv       AMP PEAK 10(12P13.32) MUTATED AMP PEAK 10(12P13.32) WILD-TYPE
  CLUS_1                             9                              30
  CLUS_2                             9                              36
  CLUS_3                             7                              17
  CLUS_4                             6                              52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(12P13.32) MUTATED        8      9      8      4      2
  AMP PEAK 10(12P13.32) WILD-TYPE     37     23     25     33     17
D10V4, multiclass
        clus
vv       AMP PEAK 10(12P13.32) MUTATED AMP PEAK 10(12P13.32) WILD-TYPE
  CLUS_1                             8                              37
  CLUS_2                             9                              23
  CLUS_3                             8                              25
  CLUS_4                             4                              33
  CLUS_5                             2                              17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(12P13.32) MUTATED       18      8      5
  AMP PEAK 10(12P13.32) WILD-TYPE     55     63     18
D10V5, multiclass
        clus
vv       AMP PEAK 10(12P13.32) MUTATED AMP PEAK 10(12P13.32) WILD-TYPE
  CLUS_1                            18                              55
  CLUS_2                             8                              63
  CLUS_3                             5                              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(12P13.32) MUTATED       11      4      8      2      6
  AMP PEAK 10(12P13.32) WILD-TYPE     41     10     21     10     54
D10V6, multiclass
        clus
vv       AMP PEAK 10(12P13.32) MUTATED AMP PEAK 10(12P13.32) WILD-TYPE
  CLUS_1                            11                              41
  CLUS_2                             4                              10
  CLUS_3                             8                              21
  CLUS_4                             2                              10
  CLUS_5                             6                              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(12P13.32) MUTATED       15      9      7
  AMP PEAK 10(12P13.32) WILD-TYPE     54     62     20
D10V7, multiclass
        clus
vv       AMP PEAK 10(12P13.32) MUTATED AMP PEAK 10(12P13.32) WILD-TYPE
  CLUS_1                            15                              54
  CLUS_2                             9                              62
  CLUS_3                             7                              20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(12P13.32) MUTATED       12     10      9
  AMP PEAK 10(12P13.32) WILD-TYPE     50     62     24
D10V8, multiclass
        clus
vv       AMP PEAK 10(12P13.32) MUTATED AMP PEAK 10(12P13.32) WILD-TYPE
  CLUS_1                            12                              50
  CLUS_2                            10                              62
  CLUS_3                             9                              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(12P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P12.1) MUTATED       14     23      5
  AMP PEAK 11(12P12.1) WILD-TYPE     32     43     52
D11V1, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                           14                             32
  CLUS_2                           23                             43
  CLUS_3                            5                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(12P12.1) MUTATED       11      6      5      9      1      9
  AMP PEAK 11(12P12.1) WILD-TYPE     19     22     37     12     15     19
                                vv
clus                             CLUS_7
  AMP PEAK 11(12P12.1) MUTATED        1
  AMP PEAK 11(12P12.1) WILD-TYPE      3
D11V2, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                           11                             19
  CLUS_2                            6                             22
  CLUS_3                            5                             37
  CLUS_4                            9                             12
  CLUS_5                            1                             15
  CLUS_6                            9                             19
  CLUS_7                            1                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(12P12.1) MUTATED       11     13     11      7
  AMP PEAK 11(12P12.1) WILD-TYPE     28     32     13     51
D11V3, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                           11                             28
  CLUS_2                           13                             32
  CLUS_3                           11                             13
  CLUS_4                            7                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(12P12.1) MUTATED       14     12      9      5      2
  AMP PEAK 11(12P12.1) WILD-TYPE     31     20     24     32     17
D11V4, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                           14                             31
  CLUS_2                           12                             20
  CLUS_3                            9                             24
  CLUS_4                            5                             32
  CLUS_5                            2                             17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P12.1) MUTATED       22     12      6
  AMP PEAK 11(12P12.1) WILD-TYPE     51     59     17
D11V5, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                           22                             51
  CLUS_2                           12                             59
  CLUS_3                            6                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(12P12.1) MUTATED       14      6     11      3      6
  AMP PEAK 11(12P12.1) WILD-TYPE     38      8     18      9     54
D11V6, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                           14                             38
  CLUS_2                            6                              8
  CLUS_3                           11                             18
  CLUS_4                            3                              9
  CLUS_5                            6                             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P12.1) MUTATED       19     12      9
  AMP PEAK 11(12P12.1) WILD-TYPE     50     59     18
D11V7, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                           19                             50
  CLUS_2                           12                             59
  CLUS_3                            9                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(12P12.1) MUTATED       16     12     12
  AMP PEAK 11(12P12.1) WILD-TYPE     46     60     21
D11V8, multiclass
        clus
vv       AMP PEAK 11(12P12.1) MUTATED AMP PEAK 11(12P12.1) WILD-TYPE
  CLUS_1                           16                             46
  CLUS_2                           12                             60
  CLUS_3                           12                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(12Q15) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12Q15) MUTATED       41     18      5
  AMP PEAK 12(12Q15) WILD-TYPE      5     48     52
D12V1, multiclass
        clus
vv       AMP PEAK 12(12Q15) MUTATED AMP PEAK 12(12Q15) WILD-TYPE
  CLUS_1                         41                            5
  CLUS_2                         18                           48
  CLUS_3                          5                           52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 12(12Q15) MUTATED       22     17      1      9      2     11      2
  AMP PEAK 12(12Q15) WILD-TYPE      8     11     41     12     14     17      2
D12V2, multiclass
        clus
vv       AMP PEAK 12(12Q15) MUTATED AMP PEAK 12(12Q15) WILD-TYPE
  CLUS_1                         22                            8
  CLUS_2                         17                           11
  CLUS_3                          1                           41
  CLUS_4                          9                           12
  CLUS_5                          2                           14
  CLUS_6                         11                           17
  CLUS_7                          2                            2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(12Q15) MUTATED       17     32     12      2
  AMP PEAK 12(12Q15) WILD-TYPE     22     13     12     56
D12V3, multiclass
        clus
vv       AMP PEAK 12(12Q15) MUTATED AMP PEAK 12(12Q15) WILD-TYPE
  CLUS_1                         17                           22
  CLUS_2                         32                           13
  CLUS_3                         12                           12
  CLUS_4                          2                           56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(12Q15) MUTATED       30     17     14      1      1
  AMP PEAK 12(12Q15) WILD-TYPE     15     15     19     36     18
D12V4, multiclass
        clus
vv       AMP PEAK 12(12Q15) MUTATED AMP PEAK 12(12Q15) WILD-TYPE
  CLUS_1                         30                           15
  CLUS_2                         17                           15
  CLUS_3                         14                           19
  CLUS_4                          1                           36
  CLUS_5                          1                           18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12Q15) MUTATED       41      9     12
  AMP PEAK 12(12Q15) WILD-TYPE     32     62     11
D12V5, multiclass
        clus
vv       AMP PEAK 12(12Q15) MUTATED AMP PEAK 12(12Q15) WILD-TYPE
  CLUS_1                         41                           32
  CLUS_2                          9                           62
  CLUS_3                         12                           11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(12Q15) MUTATED       36      8     14      3      1
  AMP PEAK 12(12Q15) WILD-TYPE     16      6     15      9     59
D12V6, multiclass
        clus
vv       AMP PEAK 12(12Q15) MUTATED AMP PEAK 12(12Q15) WILD-TYPE
  CLUS_1                         36                           16
  CLUS_2                          8                            6
  CLUS_3                         14                           15
  CLUS_4                          3                            9
  CLUS_5                          1                           59
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12Q15) MUTATED       43      7     12
  AMP PEAK 12(12Q15) WILD-TYPE     26     64     15
D12V7, multiclass
        clus
vv       AMP PEAK 12(12Q15) MUTATED AMP PEAK 12(12Q15) WILD-TYPE
  CLUS_1                         43                           26
  CLUS_2                          7                           64
  CLUS_3                         12                           15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(12Q15) MUTATED       37      9     16
  AMP PEAK 12(12Q15) WILD-TYPE     25     63     17
D12V8, multiclass
        clus
vv       AMP PEAK 12(12Q15) MUTATED AMP PEAK 12(12Q15) WILD-TYPE
  CLUS_1                         37                           25
  CLUS_2                          9                           63
  CLUS_3                         16                           17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(13Q34) MUTATED        2     20      9
  AMP PEAK 13(13Q34) WILD-TYPE     44     46     48
D13V1, multiclass
        clus
vv       AMP PEAK 13(13Q34) MUTATED AMP PEAK 13(13Q34) WILD-TYPE
  CLUS_1                          2                           44
  CLUS_2                         20                           46
  CLUS_3                          9                           48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 13(13Q34) MUTATED        5      1      9      1      1     12      2
  AMP PEAK 13(13Q34) WILD-TYPE     25     27     33     20     15     16      2
D13V2, multiclass
        clus
vv       AMP PEAK 13(13Q34) MUTATED AMP PEAK 13(13Q34) WILD-TYPE
  CLUS_1                          5                           25
  CLUS_2                          1                           27
  CLUS_3                          9                           33
  CLUS_4                          1                           20
  CLUS_5                          1                           15
  CLUS_6                         12                           16
  CLUS_7                          2                            2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(13Q34) MUTATED       11      6      1     12
  AMP PEAK 13(13Q34) WILD-TYPE     28     39     23     46
D13V3, multiclass
        clus
vv       AMP PEAK 13(13Q34) MUTATED AMP PEAK 13(13Q34) WILD-TYPE
  CLUS_1                         11                           28
  CLUS_2                          6                           39
  CLUS_3                          1                           23
  CLUS_4                         12                           46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(13Q34) MUTATED        6      2     10      8      4
  AMP PEAK 13(13Q34) WILD-TYPE     39     30     23     29     15
D13V4, multiclass
        clus
vv       AMP PEAK 13(13Q34) MUTATED AMP PEAK 13(13Q34) WILD-TYPE
  CLUS_1                          6                           39
  CLUS_2                          2                           30
  CLUS_3                         10                           23
  CLUS_4                          8                           29
  CLUS_5                          4                           15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(13Q34) MUTATED       14     11      5
  AMP PEAK 13(13Q34) WILD-TYPE     59     60     18
D13V5, multiclass
        clus
vv       AMP PEAK 13(13Q34) MUTATED AMP PEAK 13(13Q34) WILD-TYPE
  CLUS_1                         14                           59
  CLUS_2                         11                           60
  CLUS_3                          5                           18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(13Q34) MUTATED       14      2      3      0     11
  AMP PEAK 13(13Q34) WILD-TYPE     38     12     26     12     49
D13V6, multiclass
        clus
vv       AMP PEAK 13(13Q34) MUTATED AMP PEAK 13(13Q34) WILD-TYPE
  CLUS_1                         14                           38
  CLUS_2                          2                           12
  CLUS_3                          3                           26
  CLUS_4                          0                           12
  CLUS_5                         11                           49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(13Q34) MUTATED       13     12      5
  AMP PEAK 13(13Q34) WILD-TYPE     56     59     22
D13V7, multiclass
        clus
vv       AMP PEAK 13(13Q34) MUTATED AMP PEAK 13(13Q34) WILD-TYPE
  CLUS_1                         13                           56
  CLUS_2                         12                           59
  CLUS_3                          5                           22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(13Q34) MUTATED       13     13      4
  AMP PEAK 13(13Q34) WILD-TYPE     49     59     29
D13V8, multiclass
        clus
vv       AMP PEAK 13(13Q34) MUTATED AMP PEAK 13(13Q34) WILD-TYPE
  CLUS_1                         13                           49
  CLUS_2                         13                           59
  CLUS_3                          4                           29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(17P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(17P11.2) MUTATED        9     46     14
  AMP PEAK 14(17P11.2) WILD-TYPE     37     20     43
D14V1, multiclass
        clus
vv       AMP PEAK 14(17P11.2) MUTATED AMP PEAK 14(17P11.2) WILD-TYPE
  CLUS_1                            9                             37
  CLUS_2                           46                             20
  CLUS_3                           14                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(17P11.2) MUTATED       14      6     21      6      1     20
  AMP PEAK 14(17P11.2) WILD-TYPE     16     22     21     15     15      8
                                vv
clus                             CLUS_7
  AMP PEAK 14(17P11.2) MUTATED        1
  AMP PEAK 14(17P11.2) WILD-TYPE      3
D14V2, multiclass
        clus
vv       AMP PEAK 14(17P11.2) MUTATED AMP PEAK 14(17P11.2) WILD-TYPE
  CLUS_1                           14                             16
  CLUS_2                            6                             22
  CLUS_3                           21                             21
  CLUS_4                            6                             15
  CLUS_5                            1                             15
  CLUS_6                           20                              8
  CLUS_7                            1                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(17P11.2) MUTATED       21     17      6     24
  AMP PEAK 14(17P11.2) WILD-TYPE     18     28     18     34
D14V3, multiclass
        clus
vv       AMP PEAK 14(17P11.2) MUTATED AMP PEAK 14(17P11.2) WILD-TYPE
  CLUS_1                           21                             18
  CLUS_2                           17                             28
  CLUS_3                            6                             18
  CLUS_4                           24                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(17P11.2) MUTATED       20      5     18     18      7
  AMP PEAK 14(17P11.2) WILD-TYPE     25     27     15     19     12
D14V4, multiclass
        clus
vv       AMP PEAK 14(17P11.2) MUTATED AMP PEAK 14(17P11.2) WILD-TYPE
  CLUS_1                           20                             25
  CLUS_2                            5                             27
  CLUS_3                           18                             15
  CLUS_4                           18                             19
  CLUS_5                            7                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(17P11.2) MUTATED       26     30     11
  AMP PEAK 14(17P11.2) WILD-TYPE     47     41     12
D14V5, multiclass
        clus
vv       AMP PEAK 14(17P11.2) MUTATED AMP PEAK 14(17P11.2) WILD-TYPE
  CLUS_1                           26                             47
  CLUS_2                           30                             41
  CLUS_3                           11                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(17P11.2) MUTATED       21      8     13      1     24
  AMP PEAK 14(17P11.2) WILD-TYPE     31      6     16     11     36
D14V6, multiclass
        clus
vv       AMP PEAK 14(17P11.2) MUTATED AMP PEAK 14(17P11.2) WILD-TYPE
  CLUS_1                           21                             31
  CLUS_2                            8                              6
  CLUS_3                           13                             16
  CLUS_4                            1                             11
  CLUS_5                           24                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(17P11.2) MUTATED       24     29     14
  AMP PEAK 14(17P11.2) WILD-TYPE     45     42     13
D14V7, multiclass
        clus
vv       AMP PEAK 14(17P11.2) MUTATED AMP PEAK 14(17P11.2) WILD-TYPE
  CLUS_1                           24                             45
  CLUS_2                           29                             42
  CLUS_3                           14                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(17P11.2) MUTATED       22     31     14
  AMP PEAK 14(17P11.2) WILD-TYPE     40     41     19
D14V8, multiclass
        clus
vv       AMP PEAK 14(17P11.2) MUTATED AMP PEAK 14(17P11.2) WILD-TYPE
  CLUS_1                           22                             40
  CLUS_2                           31                             41
  CLUS_3                           14                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(17Q24.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(17Q24.3) MUTATED       12     27      9
  AMP PEAK 15(17Q24.3) WILD-TYPE     34     39     48
D15V1, multiclass
        clus
vv       AMP PEAK 15(17Q24.3) MUTATED AMP PEAK 15(17Q24.3) WILD-TYPE
  CLUS_1                           12                             34
  CLUS_2                           27                             39
  CLUS_3                            9                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(17Q24.3) MUTATED       11      6      4      8      2     13
  AMP PEAK 15(17Q24.3) WILD-TYPE     19     22     38     13     14     15
                                vv
clus                             CLUS_7
  AMP PEAK 15(17Q24.3) MUTATED        4
  AMP PEAK 15(17Q24.3) WILD-TYPE      0
D15V2, multiclass
        clus
vv       AMP PEAK 15(17Q24.3) MUTATED AMP PEAK 15(17Q24.3) WILD-TYPE
  CLUS_1                           11                             19
  CLUS_2                            6                             22
  CLUS_3                            4                             38
  CLUS_4                            8                             13
  CLUS_5                            2                             14
  CLUS_6                           13                             15
  CLUS_7                            4                              0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(17Q24.3) MUTATED       18     10      9      9
  AMP PEAK 15(17Q24.3) WILD-TYPE     21     35     15     49
D15V3, multiclass
        clus
vv       AMP PEAK 15(17Q24.3) MUTATED AMP PEAK 15(17Q24.3) WILD-TYPE
  CLUS_1                           18                             21
  CLUS_2                           10                             35
  CLUS_3                            9                             15
  CLUS_4                            9                             49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(17Q24.3) MUTATED       14     10     12      2      8
  AMP PEAK 15(17Q24.3) WILD-TYPE     31     22     21     35     11
D15V4, multiclass
        clus
vv       AMP PEAK 15(17Q24.3) MUTATED AMP PEAK 15(17Q24.3) WILD-TYPE
  CLUS_1                           14                             31
  CLUS_2                           10                             22
  CLUS_3                           12                             21
  CLUS_4                            2                             35
  CLUS_5                            8                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(17Q24.3) MUTATED       23     14     10
  AMP PEAK 15(17Q24.3) WILD-TYPE     50     57     13
D15V5, multiclass
        clus
vv       AMP PEAK 15(17Q24.3) MUTATED AMP PEAK 15(17Q24.3) WILD-TYPE
  CLUS_1                           23                             50
  CLUS_2                           14                             57
  CLUS_3                           10                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(17Q24.3) MUTATED       17      5     13      3      9
  AMP PEAK 15(17Q24.3) WILD-TYPE     35      9     16      9     51
D15V6, multiclass
        clus
vv       AMP PEAK 15(17Q24.3) MUTATED AMP PEAK 15(17Q24.3) WILD-TYPE
  CLUS_1                           17                             35
  CLUS_2                            5                              9
  CLUS_3                           13                             16
  CLUS_4                            3                              9
  CLUS_5                            9                             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(17Q24.3) MUTATED       23     14     10
  AMP PEAK 15(17Q24.3) WILD-TYPE     46     57     17
D15V7, multiclass
        clus
vv       AMP PEAK 15(17Q24.3) MUTATED AMP PEAK 15(17Q24.3) WILD-TYPE
  CLUS_1                           23                             46
  CLUS_2                           14                             57
  CLUS_3                           10                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(17Q24.3) MUTATED       19     13     15
  AMP PEAK 15(17Q24.3) WILD-TYPE     43     59     18
D15V8, multiclass
        clus
vv       AMP PEAK 15(17Q24.3) MUTATED AMP PEAK 15(17Q24.3) WILD-TYPE
  CLUS_1                           19                             43
  CLUS_2                           13                             59
  CLUS_3                           15                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(19P13.2) MUTATED       17     40     11
  AMP PEAK 16(19P13.2) WILD-TYPE     29     26     46
D16V1, multiclass
        clus
vv       AMP PEAK 16(19P13.2) MUTATED AMP PEAK 16(19P13.2) WILD-TYPE
  CLUS_1                           17                             29
  CLUS_2                           40                             26
  CLUS_3                           11                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(19P13.2) MUTATED       20     10     18      6      4      9
  AMP PEAK 16(19P13.2) WILD-TYPE     10     18     24     15     12     19
                                vv
clus                             CLUS_7
  AMP PEAK 16(19P13.2) MUTATED        1
  AMP PEAK 16(19P13.2) WILD-TYPE      3
D16V2, multiclass
        clus
vv       AMP PEAK 16(19P13.2) MUTATED AMP PEAK 16(19P13.2) WILD-TYPE
  CLUS_1                           20                             10
  CLUS_2                           10                             18
  CLUS_3                           18                             24
  CLUS_4                            6                             15
  CLUS_5                            4                             12
  CLUS_6                            9                             19
  CLUS_7                            1                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(19P13.2) MUTATED       12     25      8     23
  AMP PEAK 16(19P13.2) WILD-TYPE     27     20     16     35
D16V3, multiclass
        clus
vv       AMP PEAK 16(19P13.2) MUTATED AMP PEAK 16(19P13.2) WILD-TYPE
  CLUS_1                           12                             27
  CLUS_2                           25                             20
  CLUS_3                            8                             16
  CLUS_4                           23                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(19P13.2) MUTATED       26     11      8     15      8
  AMP PEAK 16(19P13.2) WILD-TYPE     19     21     25     22     11
D16V4, multiclass
        clus
vv       AMP PEAK 16(19P13.2) MUTATED AMP PEAK 16(19P13.2) WILD-TYPE
  CLUS_1                           26                             19
  CLUS_2                           11                             21
  CLUS_3                            8                             25
  CLUS_4                           15                             22
  CLUS_5                            8                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(19P13.2) MUTATED       29     30      8
  AMP PEAK 16(19P13.2) WILD-TYPE     44     41     15
D16V5, multiclass
        clus
vv       AMP PEAK 16(19P13.2) MUTATED AMP PEAK 16(19P13.2) WILD-TYPE
  CLUS_1                           29                             44
  CLUS_2                           30                             41
  CLUS_3                            8                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(19P13.2) MUTATED       23      6     13      2     23
  AMP PEAK 16(19P13.2) WILD-TYPE     29      8     16     10     37
D16V6, multiclass
        clus
vv       AMP PEAK 16(19P13.2) MUTATED AMP PEAK 16(19P13.2) WILD-TYPE
  CLUS_1                           23                             29
  CLUS_2                            6                              8
  CLUS_3                           13                             16
  CLUS_4                            2                             10
  CLUS_5                           23                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(19P13.2) MUTATED       28     30      9
  AMP PEAK 16(19P13.2) WILD-TYPE     41     41     18
D16V7, multiclass
        clus
vv       AMP PEAK 16(19P13.2) MUTATED AMP PEAK 16(19P13.2) WILD-TYPE
  CLUS_1                           28                             41
  CLUS_2                           30                             41
  CLUS_3                            9                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(19P13.2) MUTATED       24     28     15
  AMP PEAK 16(19P13.2) WILD-TYPE     38     44     18
D16V8, multiclass
        clus
vv       AMP PEAK 16(19P13.2) MUTATED AMP PEAK 16(19P13.2) WILD-TYPE
  CLUS_1                           24                             38
  CLUS_2                           28                             44
  CLUS_3                           15                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(19Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(19Q12) MUTATED       14     39      8
  AMP PEAK 17(19Q12) WILD-TYPE     32     27     49
D17V1, multiclass
        clus
vv       AMP PEAK 17(19Q12) MUTATED AMP PEAK 17(19Q12) WILD-TYPE
  CLUS_1                         14                           32
  CLUS_2                         39                           27
  CLUS_3                          8                           49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AMP PEAK 17(19Q12) MUTATED       16      7     10      6      2     18      2
  AMP PEAK 17(19Q12) WILD-TYPE     14     21     32     15     14     10      2
D17V2, multiclass
        clus
vv       AMP PEAK 17(19Q12) MUTATED AMP PEAK 17(19Q12) WILD-TYPE
  CLUS_1                         16                           14
  CLUS_2                          7                           21
  CLUS_3                         10                           32
  CLUS_4                          6                           15
  CLUS_5                          2                           14
  CLUS_6                         18                           10
  CLUS_7                          2                            2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(19Q12) MUTATED       21     18      9     13
  AMP PEAK 17(19Q12) WILD-TYPE     18     27     15     45
D17V3, multiclass
        clus
vv       AMP PEAK 17(19Q12) MUTATED AMP PEAK 17(19Q12) WILD-TYPE
  CLUS_1                         21                           18
  CLUS_2                         18                           27
  CLUS_3                          9                           15
  CLUS_4                         13                           45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(19Q12) MUTATED       22     11     16     10      2
  AMP PEAK 17(19Q12) WILD-TYPE     23     21     17     27     17
D17V4, multiclass
        clus
vv       AMP PEAK 17(19Q12) MUTATED AMP PEAK 17(19Q12) WILD-TYPE
  CLUS_1                         22                           23
  CLUS_2                         11                           21
  CLUS_3                         16                           17
  CLUS_4                         10                           27
  CLUS_5                          2                           17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(19Q12) MUTATED       28     23     10
  AMP PEAK 17(19Q12) WILD-TYPE     45     48     13
D17V5, multiclass
        clus
vv       AMP PEAK 17(19Q12) MUTATED AMP PEAK 17(19Q12) WILD-TYPE
  CLUS_1                         28                           45
  CLUS_2                         23                           48
  CLUS_3                         10                           13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(19Q12) MUTATED       22     10     14      2     13
  AMP PEAK 17(19Q12) WILD-TYPE     30      4     15     10     47
D17V6, multiclass
        clus
vv       AMP PEAK 17(19Q12) MUTATED AMP PEAK 17(19Q12) WILD-TYPE
  CLUS_1                         22                           30
  CLUS_2                         10                            4
  CLUS_3                         14                           15
  CLUS_4                          2                           10
  CLUS_5                         13                           47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(19Q12) MUTATED       27     22     12
  AMP PEAK 17(19Q12) WILD-TYPE     42     49     15
D17V7, multiclass
        clus
vv       AMP PEAK 17(19Q12) MUTATED AMP PEAK 17(19Q12) WILD-TYPE
  CLUS_1                         27                           42
  CLUS_2                         22                           49
  CLUS_3                         12                           15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(19Q12) MUTATED       23     23     15
  AMP PEAK 17(19Q12) WILD-TYPE     39     49     18
D17V8, multiclass
        clus
vv       AMP PEAK 17(19Q12) MUTATED AMP PEAK 17(19Q12) WILD-TYPE
  CLUS_1                         23                           39
  CLUS_2                         23                           49
  CLUS_3                         15                           18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(20Q13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(20Q13.33) MUTATED       19     38     11
  AMP PEAK 18(20Q13.33) WILD-TYPE     27     28     46
D18V1, multiclass
        clus
vv       AMP PEAK 18(20Q13.33) MUTATED AMP PEAK 18(20Q13.33) WILD-TYPE
  CLUS_1                            19                              27
  CLUS_2                            38                              28
  CLUS_3                            11                              46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(20Q13.33) MUTATED       19      9     11      8      3     17
  AMP PEAK 18(20Q13.33) WILD-TYPE     11     19     31     13     13     11
                                 vv
clus                              CLUS_7
  AMP PEAK 18(20Q13.33) MUTATED        1
  AMP PEAK 18(20Q13.33) WILD-TYPE      3
D18V2, multiclass
        clus
vv       AMP PEAK 18(20Q13.33) MUTATED AMP PEAK 18(20Q13.33) WILD-TYPE
  CLUS_1                            19                              11
  CLUS_2                             9                              19
  CLUS_3                            11                              31
  CLUS_4                             8                              13
  CLUS_5                             3                              13
  CLUS_6                            17                              11
  CLUS_7                             1                               3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(20Q13.33) MUTATED       24     21      8     14
  AMP PEAK 18(20Q13.33) WILD-TYPE     15     24     16     44
D18V3, multiclass
        clus
vv       AMP PEAK 18(20Q13.33) MUTATED AMP PEAK 18(20Q13.33) WILD-TYPE
  CLUS_1                            24                              15
  CLUS_2                            21                              24
  CLUS_3                             8                              16
  CLUS_4                            14                              44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(20Q13.33) MUTATED       25     12     17      9      4
  AMP PEAK 18(20Q13.33) WILD-TYPE     20     20     16     28     15
D18V4, multiclass
        clus
vv       AMP PEAK 18(20Q13.33) MUTATED AMP PEAK 18(20Q13.33) WILD-TYPE
  CLUS_1                            25                              20
  CLUS_2                            12                              20
  CLUS_3                            17                              16
  CLUS_4                             9                              28
  CLUS_5                             4                              15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(20Q13.33) MUTATED       34     21     13
  AMP PEAK 18(20Q13.33) WILD-TYPE     39     50     10
D18V5, multiclass
        clus
vv       AMP PEAK 18(20Q13.33) MUTATED AMP PEAK 18(20Q13.33) WILD-TYPE
  CLUS_1                            34                              39
  CLUS_2                            21                              50
  CLUS_3                            13                              10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(20Q13.33) MUTATED       24     10     16      3     15
  AMP PEAK 18(20Q13.33) WILD-TYPE     28      4     13      9     45
D18V6, multiclass
        clus
vv       AMP PEAK 18(20Q13.33) MUTATED AMP PEAK 18(20Q13.33) WILD-TYPE
  CLUS_1                            24                              28
  CLUS_2                            10                               4
  CLUS_3                            16                              13
  CLUS_4                             3                               9
  CLUS_5                            15                              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(20Q13.33) MUTATED       29     22     17
  AMP PEAK 18(20Q13.33) WILD-TYPE     40     49     10
D18V7, multiclass
        clus
vv       AMP PEAK 18(20Q13.33) MUTATED AMP PEAK 18(20Q13.33) WILD-TYPE
  CLUS_1                            29                              40
  CLUS_2                            22                              49
  CLUS_3                            17                              10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(20Q13.33) MUTATED       24     24     20
  AMP PEAK 18(20Q13.33) WILD-TYPE     38     48     13
D18V8, multiclass
        clus
vv       AMP PEAK 18(20Q13.33) MUTATED AMP PEAK 18(20Q13.33) WILD-TYPE
  CLUS_1                            24                              38
  CLUS_2                            24                              48
  CLUS_3                            20                              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(21Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(21Q21.1) MUTATED        9     32     10
  AMP PEAK 19(21Q21.1) WILD-TYPE     37     34     47
D19V1, multiclass
        clus
vv       AMP PEAK 19(21Q21.1) MUTATED AMP PEAK 19(21Q21.1) WILD-TYPE
  CLUS_1                            9                             37
  CLUS_2                           32                             34
  CLUS_3                           10                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(21Q21.1) MUTATED       14      5     10      6      0     14
  AMP PEAK 19(21Q21.1) WILD-TYPE     16     23     32     15     16     14
                                vv
clus                             CLUS_7
  AMP PEAK 19(21Q21.1) MUTATED        2
  AMP PEAK 19(21Q21.1) WILD-TYPE      2
D19V2, multiclass
        clus
vv       AMP PEAK 19(21Q21.1) MUTATED AMP PEAK 19(21Q21.1) WILD-TYPE
  CLUS_1                           14                             16
  CLUS_2                            5                             23
  CLUS_3                           10                             32
  CLUS_4                            6                             15
  CLUS_5                            0                             16
  CLUS_6                           14                             14
  CLUS_7                            2                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(21Q21.1) MUTATED       16     16      6     12
  AMP PEAK 19(21Q21.1) WILD-TYPE     23     29     18     46
D19V3, multiclass
        clus
vv       AMP PEAK 19(21Q21.1) MUTATED AMP PEAK 19(21Q21.1) WILD-TYPE
  CLUS_1                           16                             23
  CLUS_2                           16                             29
  CLUS_3                            6                             18
  CLUS_4                           12                             46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(21Q21.1) MUTATED       19      7     12      9      3
  AMP PEAK 19(21Q21.1) WILD-TYPE     26     25     21     28     16
D19V4, multiclass
        clus
vv       AMP PEAK 19(21Q21.1) MUTATED AMP PEAK 19(21Q21.1) WILD-TYPE
  CLUS_1                           19                             26
  CLUS_2                            7                             25
  CLUS_3                           12                             21
  CLUS_4                            9                             28
  CLUS_5                            3                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(21Q21.1) MUTATED       27     18      5
  AMP PEAK 19(21Q21.1) WILD-TYPE     46     53     18
D19V5, multiclass
        clus
vv       AMP PEAK 19(21Q21.1) MUTATED AMP PEAK 19(21Q21.1) WILD-TYPE
  CLUS_1                           27                             46
  CLUS_2                           18                             53
  CLUS_3                            5                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(21Q21.1) MUTATED       23      7      6      3     11
  AMP PEAK 19(21Q21.1) WILD-TYPE     29      7     23      9     49
D19V6, multiclass
        clus
vv       AMP PEAK 19(21Q21.1) MUTATED AMP PEAK 19(21Q21.1) WILD-TYPE
  CLUS_1                           23                             29
  CLUS_2                            7                              7
  CLUS_3                            6                             23
  CLUS_4                            3                              9
  CLUS_5                           11                             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(21Q21.1) MUTATED       27     17      6
  AMP PEAK 19(21Q21.1) WILD-TYPE     42     54     21
D19V7, multiclass
        clus
vv       AMP PEAK 19(21Q21.1) MUTATED AMP PEAK 19(21Q21.1) WILD-TYPE
  CLUS_1                           27                             42
  CLUS_2                           17                             54
  CLUS_3                            6                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(21Q21.1) MUTATED       24     18      8
  AMP PEAK 19(21Q21.1) WILD-TYPE     38     54     25
D19V8, multiclass
        clus
vv       AMP PEAK 19(21Q21.1) MUTATED AMP PEAK 19(21Q21.1) WILD-TYPE
  CLUS_1                           24                             38
  CLUS_2                           18                             54
  CLUS_3                            8                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(XP21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(XP21.2) MUTATED       11     39     10
  AMP PEAK 20(XP21.2) WILD-TYPE     35     27     47
D20V1, multiclass
        clus
vv       AMP PEAK 20(XP21.2) MUTATED AMP PEAK 20(XP21.2) WILD-TYPE
  CLUS_1                          11                            35
  CLUS_2                          39                            27
  CLUS_3                          10                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(XP21.2) MUTATED       16      5     14      4      2     16
  AMP PEAK 20(XP21.2) WILD-TYPE     14     23     28     17     14     12
                               vv
clus                            CLUS_7
  AMP PEAK 20(XP21.2) MUTATED        3
  AMP PEAK 20(XP21.2) WILD-TYPE      1
D20V2, multiclass
        clus
vv       AMP PEAK 20(XP21.2) MUTATED AMP PEAK 20(XP21.2) WILD-TYPE
  CLUS_1                          16                            14
  CLUS_2                           5                            23
  CLUS_3                          14                            28
  CLUS_4                           4                            17
  CLUS_5                           2                            14
  CLUS_6                          16                            12
  CLUS_7                           3                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(XP21.2) MUTATED       20     17      4     19
  AMP PEAK 20(XP21.2) WILD-TYPE     19     28     20     39
D20V3, multiclass
        clus
vv       AMP PEAK 20(XP21.2) MUTATED AMP PEAK 20(XP21.2) WILD-TYPE
  CLUS_1                          20                            19
  CLUS_2                          17                            28
  CLUS_3                           4                            20
  CLUS_4                          19                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(XP21.2) MUTATED       17      7     17     14      5
  AMP PEAK 20(XP21.2) WILD-TYPE     28     25     16     23     14
D20V4, multiclass
        clus
vv       AMP PEAK 20(XP21.2) MUTATED AMP PEAK 20(XP21.2) WILD-TYPE
  CLUS_1                          17                            28
  CLUS_2                           7                            25
  CLUS_3                          17                            16
  CLUS_4                          14                            23
  CLUS_5                           5                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(XP21.2) MUTATED       24     25      9
  AMP PEAK 20(XP21.2) WILD-TYPE     49     46     14
D20V5, multiclass
        clus
vv       AMP PEAK 20(XP21.2) MUTATED AMP PEAK 20(XP21.2) WILD-TYPE
  CLUS_1                          24                            49
  CLUS_2                          25                            46
  CLUS_3                           9                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(XP21.2) MUTATED       22      7     11      0     18
  AMP PEAK 20(XP21.2) WILD-TYPE     30      7     18     12     42
D20V6, multiclass
        clus
vv       AMP PEAK 20(XP21.2) MUTATED AMP PEAK 20(XP21.2) WILD-TYPE
  CLUS_1                          22                            30
  CLUS_2                           7                             7
  CLUS_3                          11                            18
  CLUS_4                           0                            12
  CLUS_5                          18                            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(XP21.2) MUTATED       22     24     12
  AMP PEAK 20(XP21.2) WILD-TYPE     47     47     15
D20V7, multiclass
        clus
vv       AMP PEAK 20(XP21.2) MUTATED AMP PEAK 20(XP21.2) WILD-TYPE
  CLUS_1                          22                            47
  CLUS_2                          24                            47
  CLUS_3                          12                            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(XP21.2) MUTATED       20     25     13
  AMP PEAK 20(XP21.2) WILD-TYPE     42     47     20
D20V8, multiclass
        clus
vv       AMP PEAK 20(XP21.2) MUTATED AMP PEAK 20(XP21.2) WILD-TYPE
  CLUS_1                          20                            42
  CLUS_2                          25                            47
  CLUS_3                          13                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(XQ21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(XQ21.2) MUTATED        9     14      2
  AMP PEAK 21(XQ21.2) WILD-TYPE     37     52     55
D21V1, multiclass
        clus
vv       AMP PEAK 21(XQ21.2) MUTATED AMP PEAK 21(XQ21.2) WILD-TYPE
  CLUS_1                           9                            37
  CLUS_2                          14                            52
  CLUS_3                           2                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(XQ21.2) MUTATED        6      2      3      5      1      6
  AMP PEAK 21(XQ21.2) WILD-TYPE     24     26     39     16     15     22
                               vv
clus                            CLUS_7
  AMP PEAK 21(XQ21.2) MUTATED        2
  AMP PEAK 21(XQ21.2) WILD-TYPE      2
D21V2, multiclass
        clus
vv       AMP PEAK 21(XQ21.2) MUTATED AMP PEAK 21(XQ21.2) WILD-TYPE
  CLUS_1                           6                            24
  CLUS_2                           2                            26
  CLUS_3                           3                            39
  CLUS_4                           5                            16
  CLUS_5                           1                            15
  CLUS_6                           6                            22
  CLUS_7                           2                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(XQ21.2) MUTATED        7      8      4      6
  AMP PEAK 21(XQ21.2) WILD-TYPE     32     37     20     52
D21V3, multiclass
        clus
vv       AMP PEAK 21(XQ21.2) MUTATED AMP PEAK 21(XQ21.2) WILD-TYPE
  CLUS_1                           7                            32
  CLUS_2                           8                            37
  CLUS_3                           4                            20
  CLUS_4                           6                            52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(XQ21.2) MUTATED       10      4      5      2      4
  AMP PEAK 21(XQ21.2) WILD-TYPE     35     28     28     35     15
D21V4, multiclass
        clus
vv       AMP PEAK 21(XQ21.2) MUTATED AMP PEAK 21(XQ21.2) WILD-TYPE
  CLUS_1                          10                            35
  CLUS_2                           4                            28
  CLUS_3                           5                            28
  CLUS_4                           2                            35
  CLUS_5                           4                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(XQ21.2) MUTATED       11      8      5
  AMP PEAK 21(XQ21.2) WILD-TYPE     62     63     18
D21V5, multiclass
        clus
vv       AMP PEAK 21(XQ21.2) MUTATED AMP PEAK 21(XQ21.2) WILD-TYPE
  CLUS_1                          11                            62
  CLUS_2                           8                            63
  CLUS_3                           5                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(XQ21.2) MUTATED        7      3      6      3      5
  AMP PEAK 21(XQ21.2) WILD-TYPE     45     11     23      9     55
D21V6, multiclass
        clus
vv       AMP PEAK 21(XQ21.2) MUTATED AMP PEAK 21(XQ21.2) WILD-TYPE
  CLUS_1                           7                            45
  CLUS_2                           3                            11
  CLUS_3                           6                            23
  CLUS_4                           3                             9
  CLUS_5                           5                            55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(XQ21.2) MUTATED       11      8      5
  AMP PEAK 21(XQ21.2) WILD-TYPE     58     63     22
D21V7, multiclass
        clus
vv       AMP PEAK 21(XQ21.2) MUTATED AMP PEAK 21(XQ21.2) WILD-TYPE
  CLUS_1                          11                            58
  CLUS_2                           8                            63
  CLUS_3                           5                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(XQ21.2) MUTATED       10      8      6
  AMP PEAK 21(XQ21.2) WILD-TYPE     52     64     27
D21V8, multiclass
        clus
vv       AMP PEAK 21(XQ21.2) MUTATED AMP PEAK 21(XQ21.2) WILD-TYPE
  CLUS_1                          10                            52
  CLUS_2                           8                            64
  CLUS_3                           6                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = DEL PEAK  1(1P36.32) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED        6     23     22
  DEL PEAK  1(1P36.32) WILD-TYPE     40     43     35
D22V1, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            6                             40
  CLUS_2                           23                             43
  CLUS_3                           22                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.32) MUTATED        7      1     27      5      6      3
  DEL PEAK  1(1P36.32) WILD-TYPE     23     27     15     16     10     25
                                vv
clus                             CLUS_7
  DEL PEAK  1(1P36.32) MUTATED        2
  DEL PEAK  1(1P36.32) WILD-TYPE      2
D22V2, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            7                             23
  CLUS_2                            1                             27
  CLUS_3                           27                             15
  CLUS_4                            5                             16
  CLUS_5                            6                             10
  CLUS_6                            3                             25
  CLUS_7                            2                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.32) MUTATED        5      7      4     34
  DEL PEAK  1(1P36.32) WILD-TYPE     34     38     20     24
D22V3, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            5                             34
  CLUS_2                            7                             38
  CLUS_3                            4                             20
  CLUS_4                           34                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.32) MUTATED        7      5      3     23     12
  DEL PEAK  1(1P36.32) WILD-TYPE     38     27     30     14      7
D22V4, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            7                             38
  CLUS_2                            5                             27
  CLUS_3                            3                             30
  CLUS_4                           23                             14
  CLUS_5                           12                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED       10     37      4
  DEL PEAK  1(1P36.32) WILD-TYPE     63     34     19
D22V5, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           10                             63
  CLUS_2                           37                             34
  CLUS_3                            4                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.32) MUTATED        7      3      4      1     36
  DEL PEAK  1(1P36.32) WILD-TYPE     45     11     25     11     24
D22V6, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            7                             45
  CLUS_2                            3                             11
  CLUS_3                            4                             25
  CLUS_4                            1                             11
  CLUS_5                           36                             24
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED        9     38      4
  DEL PEAK  1(1P36.32) WILD-TYPE     60     33     23
D22V7, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            9                             60
  CLUS_2                           38                             33
  CLUS_3                            4                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.32) MUTATED        9     38      4
  DEL PEAK  1(1P36.32) WILD-TYPE     53     34     29
D22V8, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            9                             53
  CLUS_2                           38                             34
  CLUS_3                            4                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = DEL PEAK  2(1P32.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P32.3) MUTATED        7     13      6
  DEL PEAK  2(1P32.3) WILD-TYPE     39     53     51
D23V1, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           7                            39
  CLUS_2                          13                            53
  CLUS_3                           6                            51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P32.3) MUTATED        5      2      3      4      6      5
  DEL PEAK  2(1P32.3) WILD-TYPE     25     26     39     17     10     23
                               vv
clus                            CLUS_7
  DEL PEAK  2(1P32.3) MUTATED        1
  DEL PEAK  2(1P32.3) WILD-TYPE      3
D23V2, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           5                            25
  CLUS_2                           2                            26
  CLUS_3                           3                            39
  CLUS_4                           4                            17
  CLUS_5                           6                            10
  CLUS_6                           5                            23
  CLUS_7                           1                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P32.3) MUTATED        6      7      3     10
  DEL PEAK  2(1P32.3) WILD-TYPE     33     38     21     48
D23V3, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           6                            33
  CLUS_2                           7                            38
  CLUS_3                           3                            21
  CLUS_4                          10                            48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P32.3) MUTATED        7      4      5      3      7
  DEL PEAK  2(1P32.3) WILD-TYPE     38     28     28     34     12
D23V4, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           7                            38
  CLUS_2                           4                            28
  CLUS_3                           5                            28
  CLUS_4                           3                            34
  CLUS_5                           7                            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P32.3) MUTATED       10     11      5
  DEL PEAK  2(1P32.3) WILD-TYPE     63     60     18
D23V5, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                          10                            63
  CLUS_2                          11                            60
  CLUS_3                           5                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P32.3) MUTATED        7      0      7      1     11
  DEL PEAK  2(1P32.3) WILD-TYPE     45     14     22     11     49
D23V6, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           7                            45
  CLUS_2                           0                            14
  CLUS_3                           7                            22
  CLUS_4                           1                            11
  CLUS_5                          11                            49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P32.3) MUTATED        9     11      6
  DEL PEAK  2(1P32.3) WILD-TYPE     60     60     21
D23V7, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           9                            60
  CLUS_2                          11                            60
  CLUS_3                           6                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P32.3) MUTATED        9     10      7
  DEL PEAK  2(1P32.3) WILD-TYPE     53     62     26
D23V8, multiclass
        clus
vv       DEL PEAK  2(1P32.3) MUTATED DEL PEAK  2(1P32.3) WILD-TYPE
  CLUS_1                           9                            53
  CLUS_2                          10                            62
  CLUS_3                           7                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = DEL PEAK  3(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q44) MUTATED       16     33      4
  DEL PEAK  3(1Q44) WILD-TYPE     30     33     53
D24V1, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        16                          30
  CLUS_2                        33                          33
  CLUS_3                         4                          53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  3(1Q44) MUTATED       18      5      8      3      2     15      2
  DEL PEAK  3(1Q44) WILD-TYPE     12     23     34     18     14     13      2
D24V2, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        18                          12
  CLUS_2                         5                          23
  CLUS_3                         8                          34
  CLUS_4                         3                          18
  CLUS_5                         2                          14
  CLUS_6                        15                          13
  CLUS_7                         2                           2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(1Q44) MUTATED       16     19      6     11
  DEL PEAK  3(1Q44) WILD-TYPE     23     26     18     47
D24V3, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        16                          23
  CLUS_2                        19                          26
  CLUS_3                         6                          18
  CLUS_4                        11                          47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1Q44) MUTATED       19      7     15      8      3
  DEL PEAK  3(1Q44) WILD-TYPE     26     25     18     29     16
D24V4, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        19                          26
  CLUS_2                         7                          25
  CLUS_3                        15                          18
  CLUS_4                         8                          29
  CLUS_5                         3                          16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q44) MUTATED       27     16     10
  DEL PEAK  3(1Q44) WILD-TYPE     46     55     13
D24V5, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        27                          46
  CLUS_2                        16                          55
  CLUS_3                        10                          13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1Q44) MUTATED       22      6     12      2     11
  DEL PEAK  3(1Q44) WILD-TYPE     30      8     17     10     49
D24V6, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        22                          30
  CLUS_2                         6                           8
  CLUS_3                        12                          17
  CLUS_4                         2                          10
  CLUS_5                        11                          49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q44) MUTATED       26     16     11
  DEL PEAK  3(1Q44) WILD-TYPE     43     55     16
D24V7, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        26                          43
  CLUS_2                        16                          55
  CLUS_3                        11                          16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q44) MUTATED       23     17     13
  DEL PEAK  3(1Q44) WILD-TYPE     39     55     20
D24V8, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        23                          39
  CLUS_2                        17                          55
  CLUS_3                        13                          20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = DEL PEAK  4(2P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2P25.3) MUTATED        8     34     14
  DEL PEAK  4(2P25.3) WILD-TYPE     38     32     43
D25V1, multiclass
        clus
vv       DEL PEAK  4(2P25.3) MUTATED DEL PEAK  4(2P25.3) WILD-TYPE
  CLUS_1                           8                            38
  CLUS_2                          34                            32
  CLUS_3                          14                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2P25.3) MUTATED       12      3     23      2      5      8
  DEL PEAK  4(2P25.3) WILD-TYPE     18     25     19     19     11     20
                               vv
clus                            CLUS_7
  DEL PEAK  4(2P25.3) MUTATED        3
  DEL PEAK  4(2P25.3) WILD-TYPE      1
D25V2, multiclass
        clus
vv       DEL PEAK  4(2P25.3) MUTATED DEL PEAK  4(2P25.3) WILD-TYPE
  CLUS_1                          12                            18
  CLUS_2                           3                            25
  CLUS_3                          23                            19
  CLUS_4                           2                            19
  CLUS_5                           5                            11
  CLUS_6                           8                            20
  CLUS_7                           3                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2P25.3) MUTATED       10     12      1     31
  DEL PEAK  4(2P25.3) WILD-TYPE     29     33     23     27
D25V3, multiclass
        clus
vv       DEL PEAK  4(2P25.3) MUTATED DEL PEAK  4(2P25.3) WILD-TYPE
  CLUS_1                          10                            29
  CLUS_2                          12                            33
  CLUS_3                           1                            23
  CLUS_4                          31                            27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2P25.3) MUTATED       13      3      8     20     10
  DEL PEAK  4(2P25.3) WILD-TYPE     32     29     25     17      9
D25V4, multiclass
        clus
vv       DEL PEAK  4(2P25.3) MUTATED DEL PEAK  4(2P25.3) WILD-TYPE
  CLUS_1                          13                            32
  CLUS_2                           3                            29
  CLUS_3                           8                            25
  CLUS_4                          20                            17
  CLUS_5                          10                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2P25.3) MUTATED       15     33      7
  DEL PEAK  4(2P25.3) WILD-TYPE     58     38     16
D25V5, multiclass
        clus
vv       DEL PEAK  4(2P25.3) MUTATED DEL PEAK  4(2P25.3) WILD-TYPE
  CLUS_1                          15                            58
  CLUS_2                          33                            38
  CLUS_3                           7                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2P25.3) MUTATED       14      4      6      0     31
  DEL PEAK  4(2P25.3) WILD-TYPE     38     10     23     12     29
D25V6, multiclass
        clus
vv       DEL PEAK  4(2P25.3) MUTATED DEL PEAK  4(2P25.3) WILD-TYPE
  CLUS_1                          14                            38
  CLUS_2                           4                            10
  CLUS_3                           6                            23
  CLUS_4                           0                            12
  CLUS_5                          31                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2P25.3) MUTATED       15     33      7
  DEL PEAK  4(2P25.3) WILD-TYPE     54     38     20
D25V7, multiclass
        clus
vv       DEL PEAK  4(2P25.3) MUTATED DEL PEAK  4(2P25.3) WILD-TYPE
  CLUS_1                          15                            54
  CLUS_2                          33                            38
  CLUS_3                           7                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2P25.3) MUTATED       14     35      6
  DEL PEAK  4(2P25.3) WILD-TYPE     48     37     27
D25V8, multiclass
        clus
vv       DEL PEAK  4(2P25.3) MUTATED DEL PEAK  4(2P25.3) WILD-TYPE
  CLUS_1                          14                            48
  CLUS_2                          35                            37
  CLUS_3                           6                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK  5(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       13     46      9
  DEL PEAK  5(2Q37.3) WILD-TYPE     33     20     48
D26V1, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          13                            33
  CLUS_2                          46                            20
  CLUS_3                           9                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q37.3) MUTATED       16      7     17      4      5     17
  DEL PEAK  5(2Q37.3) WILD-TYPE     14     21     25     17     11     11
                               vv
clus                            CLUS_7
  DEL PEAK  5(2Q37.3) MUTATED        2
  DEL PEAK  5(2Q37.3) WILD-TYPE      2
D26V2, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          16                            14
  CLUS_2                           7                            21
  CLUS_3                          17                            25
  CLUS_4                           4                            17
  CLUS_5                           5                            11
  CLUS_6                          17                            11
  CLUS_7                           2                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED       20     16      5     24
  DEL PEAK  5(2Q37.3) WILD-TYPE     19     29     19     34
D26V3, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          20                            19
  CLUS_2                          16                            29
  CLUS_3                           5                            19
  CLUS_4                          24                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q37.3) MUTATED       19      7     15     12     12
  DEL PEAK  5(2Q37.3) WILD-TYPE     26     25     18     25      7
D26V4, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          19                            26
  CLUS_2                           7                            25
  CLUS_3                          15                            18
  CLUS_4                          12                            25
  CLUS_5                          12                             7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       26     29     12
  DEL PEAK  5(2Q37.3) WILD-TYPE     47     42     11
D26V5, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          26                            47
  CLUS_2                          29                            42
  CLUS_3                          12                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q37.3) MUTATED       23      7     10      2     25
  DEL PEAK  5(2Q37.3) WILD-TYPE     29      7     19     10     35
D26V6, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          23                            29
  CLUS_2                           7                             7
  CLUS_3                          10                            19
  CLUS_4                           2                            10
  CLUS_5                          25                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       25     29     13
  DEL PEAK  5(2Q37.3) WILD-TYPE     44     42     14
D26V7, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          25                            44
  CLUS_2                          29                            42
  CLUS_3                          13                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       22     32     13
  DEL PEAK  5(2Q37.3) WILD-TYPE     40     40     20
D26V8, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          22                            40
  CLUS_2                          32                            40
  CLUS_3                          13                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK  6(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q37.3) MUTATED       14     47      9
  DEL PEAK  6(2Q37.3) WILD-TYPE     32     19     48
D27V1, multiclass
        clus
vv       DEL PEAK  6(2Q37.3) MUTATED DEL PEAK  6(2Q37.3) WILD-TYPE
  CLUS_1                          14                            32
  CLUS_2                          47                            19
  CLUS_3                           9                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(2Q37.3) MUTATED       17      6     17      5      5     18
  DEL PEAK  6(2Q37.3) WILD-TYPE     13     22     25     16     11     10
                               vv
clus                            CLUS_7
  DEL PEAK  6(2Q37.3) MUTATED        2
  DEL PEAK  6(2Q37.3) WILD-TYPE      2
D27V2, multiclass
        clus
vv       DEL PEAK  6(2Q37.3) MUTATED DEL PEAK  6(2Q37.3) WILD-TYPE
  CLUS_1                          17                            13
  CLUS_2                           6                            22
  CLUS_3                          17                            25
  CLUS_4                           5                            16
  CLUS_5                           5                            11
  CLUS_6                          18                            10
  CLUS_7                           2                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(2Q37.3) MUTATED       19     18      6     24
  DEL PEAK  6(2Q37.3) WILD-TYPE     20     27     18     34
D27V3, multiclass
        clus
vv       DEL PEAK  6(2Q37.3) MUTATED DEL PEAK  6(2Q37.3) WILD-TYPE
  CLUS_1                          19                            20
  CLUS_2                          18                            27
  CLUS_3                           6                            18
  CLUS_4                          24                            34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(2Q37.3) MUTATED       19      7     16     12     13
  DEL PEAK  6(2Q37.3) WILD-TYPE     26     25     17     25      6
D27V4, multiclass
        clus
vv       DEL PEAK  6(2Q37.3) MUTATED DEL PEAK  6(2Q37.3) WILD-TYPE
  CLUS_1                          19                            26
  CLUS_2                           7                            25
  CLUS_3                          16                            17
  CLUS_4                          12                            25
  CLUS_5                          13                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q37.3) MUTATED       29     29     11
  DEL PEAK  6(2Q37.3) WILD-TYPE     44     42     12
D27V5, multiclass
        clus
vv       DEL PEAK  6(2Q37.3) MUTATED DEL PEAK  6(2Q37.3) WILD-TYPE
  CLUS_1                          29                            44
  CLUS_2                          29                            42
  CLUS_3                          11                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(2Q37.3) MUTATED       25      7      9      3     25
  DEL PEAK  6(2Q37.3) WILD-TYPE     27      7     20      9     35
D27V6, multiclass
        clus
vv       DEL PEAK  6(2Q37.3) MUTATED DEL PEAK  6(2Q37.3) WILD-TYPE
  CLUS_1                          25                            27
  CLUS_2                           7                             7
  CLUS_3                           9                            20
  CLUS_4                           3                             9
  CLUS_5                          25                            35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q37.3) MUTATED       28     29     12
  DEL PEAK  6(2Q37.3) WILD-TYPE     41     42     15
D27V7, multiclass
        clus
vv       DEL PEAK  6(2Q37.3) MUTATED DEL PEAK  6(2Q37.3) WILD-TYPE
  CLUS_1                          28                            41
  CLUS_2                          29                            42
  CLUS_3                          12                            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(2Q37.3) MUTATED       26     31     12
  DEL PEAK  6(2Q37.3) WILD-TYPE     36     41     21
D27V8, multiclass
        clus
vv       DEL PEAK  6(2Q37.3) MUTATED DEL PEAK  6(2Q37.3) WILD-TYPE
  CLUS_1                          26                            36
  CLUS_2                          31                            41
  CLUS_3                          12                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK  7(3P21.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P21.31) MUTATED       12     19      6
  DEL PEAK  7(3P21.31) WILD-TYPE     34     47     51
D28V1, multiclass
        clus
vv       DEL PEAK  7(3P21.31) MUTATED DEL PEAK  7(3P21.31) WILD-TYPE
  CLUS_1                           12                             34
  CLUS_2                           19                             47
  CLUS_3                            6                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3P21.31) MUTATED       16      3      1      7      2      8
  DEL PEAK  7(3P21.31) WILD-TYPE     14     25     41     14     14     20
                                vv
clus                             CLUS_7
  DEL PEAK  7(3P21.31) MUTATED        0
  DEL PEAK  7(3P21.31) WILD-TYPE      4
D28V2, multiclass
        clus
vv       DEL PEAK  7(3P21.31) MUTATED DEL PEAK  7(3P21.31) WILD-TYPE
  CLUS_1                           16                             14
  CLUS_2                            3                             25
  CLUS_3                            1                             41
  CLUS_4                            7                             14
  CLUS_5                            2                             14
  CLUS_6                            8                             20
  CLUS_7                            0                              4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3P21.31) MUTATED        9     16      9      3
  DEL PEAK  7(3P21.31) WILD-TYPE     30     29     15     55
D28V3, multiclass
        clus
vv       DEL PEAK  7(3P21.31) MUTATED DEL PEAK  7(3P21.31) WILD-TYPE
  CLUS_1                            9                             30
  CLUS_2                           16                             29
  CLUS_3                            9                             15
  CLUS_4                            3                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3P21.31) MUTATED       14     11      8      1      3
  DEL PEAK  7(3P21.31) WILD-TYPE     31     21     25     36     16
D28V4, multiclass
        clus
vv       DEL PEAK  7(3P21.31) MUTATED DEL PEAK  7(3P21.31) WILD-TYPE
  CLUS_1                           14                             31
  CLUS_2                           11                             21
  CLUS_3                            8                             25
  CLUS_4                            1                             36
  CLUS_5                            3                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P21.31) MUTATED       24      8      5
  DEL PEAK  7(3P21.31) WILD-TYPE     49     63     18
D28V5, multiclass
        clus
vv       DEL PEAK  7(3P21.31) MUTATED DEL PEAK  7(3P21.31) WILD-TYPE
  CLUS_1                           24                             49
  CLUS_2                            8                             63
  CLUS_3                            5                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3P21.31) MUTATED       19      6      4      4      4
  DEL PEAK  7(3P21.31) WILD-TYPE     33      8     25      8     56
D28V6, multiclass
        clus
vv       DEL PEAK  7(3P21.31) MUTATED DEL PEAK  7(3P21.31) WILD-TYPE
  CLUS_1                           19                             33
  CLUS_2                            6                              8
  CLUS_3                            4                             25
  CLUS_4                            4                              8
  CLUS_5                            4                             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P21.31) MUTATED       22      9      6
  DEL PEAK  7(3P21.31) WILD-TYPE     47     62     21
D28V7, multiclass
        clus
vv       DEL PEAK  7(3P21.31) MUTATED DEL PEAK  7(3P21.31) WILD-TYPE
  CLUS_1                           22                             47
  CLUS_2                            9                             62
  CLUS_3                            6                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3P21.31) MUTATED       22      9      6
  DEL PEAK  7(3P21.31) WILD-TYPE     40     63     27
D28V8, multiclass
        clus
vv       DEL PEAK  7(3P21.31) MUTATED DEL PEAK  7(3P21.31) WILD-TYPE
  CLUS_1                           22                             40
  CLUS_2                            9                             63
  CLUS_3                            6                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK  8(3Q29) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q29) MUTATED       12     20      7
  DEL PEAK  8(3Q29) WILD-TYPE     34     46     50
D29V1, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        12                          34
  CLUS_2                        20                          46
  CLUS_3                         7                          50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK  8(3Q29) MUTATED       13      2      7      5      0      9      3
  DEL PEAK  8(3Q29) WILD-TYPE     17     26     35     16     16     19      1
D29V2, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        13                          17
  CLUS_2                         2                          26
  CLUS_3                         7                          35
  CLUS_4                         5                          16
  CLUS_5                         0                          16
  CLUS_6                         9                          19
  CLUS_7                         3                           1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(3Q29) MUTATED        9     15      6      9
  DEL PEAK  8(3Q29) WILD-TYPE     30     30     18     49
D29V3, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                         9                          30
  CLUS_2                        15                          30
  CLUS_3                         6                          18
  CLUS_4                         9                          49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(3Q29) MUTATED       12      9      9      7      2
  DEL PEAK  8(3Q29) WILD-TYPE     33     23     24     30     17
D29V4, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        12                          33
  CLUS_2                         9                          23
  CLUS_3                         9                          24
  CLUS_4                         7                          30
  CLUS_5                         2                          17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q29) MUTATED       20     13      5
  DEL PEAK  8(3Q29) WILD-TYPE     53     58     18
D29V5, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        20                          53
  CLUS_2                        13                          58
  CLUS_3                         5                          18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(3Q29) MUTATED       19      4      4      2      9
  DEL PEAK  8(3Q29) WILD-TYPE     33     10     25     10     51
D29V6, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        19                          33
  CLUS_2                         4                          10
  CLUS_3                         4                          25
  CLUS_4                         2                          10
  CLUS_5                         9                          51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q29) MUTATED       20     12      6
  DEL PEAK  8(3Q29) WILD-TYPE     49     59     21
D29V7, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        20                          49
  CLUS_2                        12                          59
  CLUS_3                         6                          21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(3Q29) MUTATED       20     13      5
  DEL PEAK  8(3Q29) WILD-TYPE     42     59     28
D29V8, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        20                          42
  CLUS_2                        13                          59
  CLUS_3                         5                          28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  9(4Q35.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q35.1) MUTATED       15     39      9
  DEL PEAK  9(4Q35.1) WILD-TYPE     31     27     48
D30V1, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          15                            31
  CLUS_2                          39                            27
  CLUS_3                           9                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4Q35.1) MUTATED       15      7     14      7      2     15
  DEL PEAK  9(4Q35.1) WILD-TYPE     15     21     28     14     14     13
                               vv
clus                            CLUS_7
  DEL PEAK  9(4Q35.1) MUTATED        3
  DEL PEAK  9(4Q35.1) WILD-TYPE      1
D30V2, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          15                            15
  CLUS_2                           7                            21
  CLUS_3                          14                            28
  CLUS_4                           7                            14
  CLUS_5                           2                            14
  CLUS_6                          15                            13
  CLUS_7                           3                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4Q35.1) MUTATED       18     18      8     19
  DEL PEAK  9(4Q35.1) WILD-TYPE     21     27     16     39
D30V3, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          18                            21
  CLUS_2                          18                            27
  CLUS_3                           8                            16
  CLUS_4                          19                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4Q35.1) MUTATED       18     10     16     12      7
  DEL PEAK  9(4Q35.1) WILD-TYPE     27     22     17     25     12
D30V4, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          18                            27
  CLUS_2                          10                            22
  CLUS_3                          16                            17
  CLUS_4                          12                            25
  CLUS_5                           7                            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q35.1) MUTATED       27     24     11
  DEL PEAK  9(4Q35.1) WILD-TYPE     46     47     12
D30V5, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          27                            46
  CLUS_2                          24                            47
  CLUS_3                          11                            12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4Q35.1) MUTATED       23      7     10      3     19
  DEL PEAK  9(4Q35.1) WILD-TYPE     29      7     19      9     41
D30V6, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          23                            29
  CLUS_2                           7                             7
  CLUS_3                          10                            19
  CLUS_4                           3                             9
  CLUS_5                          19                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q35.1) MUTATED       25     23     14
  DEL PEAK  9(4Q35.1) WILD-TYPE     44     48     13
D30V7, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          25                            44
  CLUS_2                          23                            48
  CLUS_3                          14                            13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4Q35.1) MUTATED       24     26     12
  DEL PEAK  9(4Q35.1) WILD-TYPE     38     46     21
D30V8, multiclass
        clus
vv       DEL PEAK  9(4Q35.1) MUTATED DEL PEAK  9(4Q35.1) WILD-TYPE
  CLUS_1                          24                            38
  CLUS_2                          26                            46
  CLUS_3                          12                            21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK 10(6P25.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P25.1) MUTATED       13     25     23
  DEL PEAK 10(6P25.1) WILD-TYPE     33     41     34
D31V1, multiclass
        clus
vv       DEL PEAK 10(6P25.1) MUTATED DEL PEAK 10(6P25.1) WILD-TYPE
  CLUS_1                          13                            33
  CLUS_2                          25                            41
  CLUS_3                          23                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(6P25.1) MUTATED        8      6     23      5      5     13
  DEL PEAK 10(6P25.1) WILD-TYPE     22     22     19     16     11     15
                               vv
clus                            CLUS_7
  DEL PEAK 10(6P25.1) MUTATED        1
  DEL PEAK 10(6P25.1) WILD-TYPE      3
D31V2, multiclass
        clus
vv       DEL PEAK 10(6P25.1) MUTATED DEL PEAK 10(6P25.1) WILD-TYPE
  CLUS_1                           8                            22
  CLUS_2                           6                            22
  CLUS_3                          23                            19
  CLUS_4                           5                            16
  CLUS_5                           5                            11
  CLUS_6                          13                            15
  CLUS_7                           1                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6P25.1) MUTATED       15      7      7     29
  DEL PEAK 10(6P25.1) WILD-TYPE     24     38     17     29
D31V3, multiclass
        clus
vv       DEL PEAK 10(6P25.1) MUTATED DEL PEAK 10(6P25.1) WILD-TYPE
  CLUS_1                          15                            24
  CLUS_2                           7                            38
  CLUS_3                           7                            17
  CLUS_4                          29                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(6P25.1) MUTATED        8     10     12     20      8
  DEL PEAK 10(6P25.1) WILD-TYPE     37     22     21     17     11
D31V4, multiclass
        clus
vv       DEL PEAK 10(6P25.1) MUTATED DEL PEAK 10(6P25.1) WILD-TYPE
  CLUS_1                           8                            37
  CLUS_2                          10                            22
  CLUS_3                          12                            21
  CLUS_4                          20                            17
  CLUS_5                           8                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P25.1) MUTATED       19     32      9
  DEL PEAK 10(6P25.1) WILD-TYPE     54     39     14
D31V5, multiclass
        clus
vv       DEL PEAK 10(6P25.1) MUTATED DEL PEAK 10(6P25.1) WILD-TYPE
  CLUS_1                          19                            54
  CLUS_2                          32                            39
  CLUS_3                           9                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(6P25.1) MUTATED       12      2     13      2     31
  DEL PEAK 10(6P25.1) WILD-TYPE     40     12     16     10     29
D31V6, multiclass
        clus
vv       DEL PEAK 10(6P25.1) MUTATED DEL PEAK 10(6P25.1) WILD-TYPE
  CLUS_1                          12                            40
  CLUS_2                           2                            12
  CLUS_3                          13                            16
  CLUS_4                           2                            10
  CLUS_5                          31                            29
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P25.1) MUTATED       17     32     11
  DEL PEAK 10(6P25.1) WILD-TYPE     52     39     16
D31V7, multiclass
        clus
vv       DEL PEAK 10(6P25.1) MUTATED DEL PEAK 10(6P25.1) WILD-TYPE
  CLUS_1                          17                            52
  CLUS_2                          32                            39
  CLUS_3                          11                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6P25.1) MUTATED       14     32     14
  DEL PEAK 10(6P25.1) WILD-TYPE     48     40     19
D31V8, multiclass
        clus
vv       DEL PEAK 10(6P25.1) MUTATED DEL PEAK 10(6P25.1) WILD-TYPE
  CLUS_1                          14                            48
  CLUS_2                          32                            40
  CLUS_3                          14                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK 11(6Q14.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q14.1) MUTATED        8     31     10
  DEL PEAK 11(6Q14.1) WILD-TYPE     38     35     47
D32V1, multiclass
        clus
vv       DEL PEAK 11(6Q14.1) MUTATED DEL PEAK 11(6Q14.1) WILD-TYPE
  CLUS_1                           8                            38
  CLUS_2                          31                            35
  CLUS_3                          10                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(6Q14.1) MUTATED        9      3     13      5      2     15
  DEL PEAK 11(6Q14.1) WILD-TYPE     21     25     29     16     14     13
                               vv
clus                            CLUS_7
  DEL PEAK 11(6Q14.1) MUTATED        2
  DEL PEAK 11(6Q14.1) WILD-TYPE      2
D32V2, multiclass
        clus
vv       DEL PEAK 11(6Q14.1) MUTATED DEL PEAK 11(6Q14.1) WILD-TYPE
  CLUS_1                           9                            21
  CLUS_2                           3                            25
  CLUS_3                          13                            29
  CLUS_4                           5                            16
  CLUS_5                           2                            14
  CLUS_6                          15                            13
  CLUS_7                           2                             2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q14.1) MUTATED       16     10      7     16
  DEL PEAK 11(6Q14.1) WILD-TYPE     23     35     17     42
D32V3, multiclass
        clus
vv       DEL PEAK 11(6Q14.1) MUTATED DEL PEAK 11(6Q14.1) WILD-TYPE
  CLUS_1                          16                            23
  CLUS_2                          10                            35
  CLUS_3                           7                            17
  CLUS_4                          16                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(6Q14.1) MUTATED       11      9     14     11      4
  DEL PEAK 11(6Q14.1) WILD-TYPE     34     23     19     26     15
D32V4, multiclass
        clus
vv       DEL PEAK 11(6Q14.1) MUTATED DEL PEAK 11(6Q14.1) WILD-TYPE
  CLUS_1                          11                            34
  CLUS_2                           9                            23
  CLUS_3                          14                            19
  CLUS_4                          11                            26
  CLUS_5                           4                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q14.1) MUTATED       22     20      6
  DEL PEAK 11(6Q14.1) WILD-TYPE     51     51     17
D32V5, multiclass
        clus
vv       DEL PEAK 11(6Q14.1) MUTATED DEL PEAK 11(6Q14.1) WILD-TYPE
  CLUS_1                          22                            51
  CLUS_2                          20                            51
  CLUS_3                           6                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(6Q14.1) MUTATED       13      5     11      3     16
  DEL PEAK 11(6Q14.1) WILD-TYPE     39      9     18      9     44
D32V6, multiclass
        clus
vv       DEL PEAK 11(6Q14.1) MUTATED DEL PEAK 11(6Q14.1) WILD-TYPE
  CLUS_1                          13                            39
  CLUS_2                           5                             9
  CLUS_3                          11                            18
  CLUS_4                           3                             9
  CLUS_5                          16                            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q14.1) MUTATED       19     20      9
  DEL PEAK 11(6Q14.1) WILD-TYPE     50     51     18
D32V7, multiclass
        clus
vv       DEL PEAK 11(6Q14.1) MUTATED DEL PEAK 11(6Q14.1) WILD-TYPE
  CLUS_1                          19                            50
  CLUS_2                          20                            51
  CLUS_3                           9                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q14.1) MUTATED       14     20     14
  DEL PEAK 11(6Q14.1) WILD-TYPE     48     52     19
D32V8, multiclass
        clus
vv       DEL PEAK 11(6Q14.1) MUTATED DEL PEAK 11(6Q14.1) WILD-TYPE
  CLUS_1                          14                            48
  CLUS_2                          20                            52
  CLUS_3                          14                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK 12(6Q16.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q16.1) MUTATED        7     28     13
  DEL PEAK 12(6Q16.1) WILD-TYPE     39     38     44
D33V1, multiclass
        clus
vv       DEL PEAK 12(6Q16.1) MUTATED DEL PEAK 12(6Q16.1) WILD-TYPE
  CLUS_1                           7                            39
  CLUS_2                          28                            38
  CLUS_3                          13                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(6Q16.1) MUTATED        8      3     14      6      4     12
  DEL PEAK 12(6Q16.1) WILD-TYPE     22     25     28     15     12     16
                               vv
clus                            CLUS_7
  DEL PEAK 12(6Q16.1) MUTATED        1
  DEL PEAK 12(6Q16.1) WILD-TYPE      3
D33V2, multiclass
        clus
vv       DEL PEAK 12(6Q16.1) MUTATED DEL PEAK 12(6Q16.1) WILD-TYPE
  CLUS_1                           8                            22
  CLUS_2                           3                            25
  CLUS_3                          14                            28
  CLUS_4                           6                            15
  CLUS_5                           4                            12
  CLUS_6                          12                            16
  CLUS_7                           1                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(6Q16.1) MUTATED       14      8      7     19
  DEL PEAK 12(6Q16.1) WILD-TYPE     25     37     17     39
D33V3, multiclass
        clus
vv       DEL PEAK 12(6Q16.1) MUTATED DEL PEAK 12(6Q16.1) WILD-TYPE
  CLUS_1                          14                            25
  CLUS_2                           8                            37
  CLUS_3                           7                            17
  CLUS_4                          19                            39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(6Q16.1) MUTATED       10     10     11     12      5
  DEL PEAK 12(6Q16.1) WILD-TYPE     35     22     22     25     14
D33V4, multiclass
        clus
vv       DEL PEAK 12(6Q16.1) MUTATED DEL PEAK 12(6Q16.1) WILD-TYPE
  CLUS_1                          10                            35
  CLUS_2                          10                            22
  CLUS_3                          11                            22
  CLUS_4                          12                            25
  CLUS_5                           5                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q16.1) MUTATED       19     21      7
  DEL PEAK 12(6Q16.1) WILD-TYPE     54     50     16
D33V5, multiclass
        clus
vv       DEL PEAK 12(6Q16.1) MUTATED DEL PEAK 12(6Q16.1) WILD-TYPE
  CLUS_1                          19                            54
  CLUS_2                          21                            50
  CLUS_3                           7                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(6Q16.1) MUTATED       12      3     11      2     19
  DEL PEAK 12(6Q16.1) WILD-TYPE     40     11     18     10     41
D33V6, multiclass
        clus
vv       DEL PEAK 12(6Q16.1) MUTATED DEL PEAK 12(6Q16.1) WILD-TYPE
  CLUS_1                          12                            40
  CLUS_2                           3                            11
  CLUS_3                          11                            18
  CLUS_4                           2                            10
  CLUS_5                          19                            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q16.1) MUTATED       16     23      8
  DEL PEAK 12(6Q16.1) WILD-TYPE     53     48     19
D33V7, multiclass
        clus
vv       DEL PEAK 12(6Q16.1) MUTATED DEL PEAK 12(6Q16.1) WILD-TYPE
  CLUS_1                          16                            53
  CLUS_2                          23                            48
  CLUS_3                           8                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(6Q16.1) MUTATED       12     21     14
  DEL PEAK 12(6Q16.1) WILD-TYPE     50     51     19
D33V8, multiclass
        clus
vv       DEL PEAK 12(6Q16.1) MUTATED DEL PEAK 12(6Q16.1) WILD-TYPE
  CLUS_1                          12                            50
  CLUS_2                          21                            51
  CLUS_3                          14                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK 13(7Q36.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q36.3) MUTATED       14     26      4
  DEL PEAK 13(7Q36.3) WILD-TYPE     32     40     53
D34V1, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                          14                            32
  CLUS_2                          26                            40
  CLUS_3                           4                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(7Q36.3) MUTATED       12      5      9      3      2     12
  DEL PEAK 13(7Q36.3) WILD-TYPE     18     23     33     18     14     16
                               vv
clus                            CLUS_7
  DEL PEAK 13(7Q36.3) MUTATED        1
  DEL PEAK 13(7Q36.3) WILD-TYPE      3
D34V2, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                          12                            18
  CLUS_2                           5                            23
  CLUS_3                           9                            33
  CLUS_4                           3                            18
  CLUS_5                           2                            14
  CLUS_6                          12                            16
  CLUS_7                           1                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(7Q36.3) MUTATED       15     12      3     13
  DEL PEAK 13(7Q36.3) WILD-TYPE     24     33     21     45
D34V3, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                          15                            24
  CLUS_2                          12                            33
  CLUS_3                           3                            21
  CLUS_4                          13                            45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(7Q36.3) MUTATED       14      5     11      8      5
  DEL PEAK 13(7Q36.3) WILD-TYPE     31     27     22     29     14
D34V4, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                          14                            31
  CLUS_2                           5                            27
  CLUS_3                          11                            22
  CLUS_4                           8                            29
  CLUS_5                           5                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q36.3) MUTATED       18     16      9
  DEL PEAK 13(7Q36.3) WILD-TYPE     55     55     14
D34V5, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                          18                            55
  CLUS_2                          16                            55
  CLUS_3                           9                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(7Q36.3) MUTATED       15      3     11      1     13
  DEL PEAK 13(7Q36.3) WILD-TYPE     37     11     18     11     47
D34V6, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                          15                            37
  CLUS_2                           3                            11
  CLUS_3                          11                            18
  CLUS_4                           1                            11
  CLUS_5                          13                            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q36.3) MUTATED       17     16     10
  DEL PEAK 13(7Q36.3) WILD-TYPE     52     55     17
D34V7, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                          17                            52
  CLUS_2                          16                            55
  CLUS_3                          10                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(7Q36.3) MUTATED       16     16     11
  DEL PEAK 13(7Q36.3) WILD-TYPE     46     56     22
D34V8, multiclass
        clus
vv       DEL PEAK 13(7Q36.3) MUTATED DEL PEAK 13(7Q36.3) WILD-TYPE
  CLUS_1                          16                            46
  CLUS_2                          16                            56
  CLUS_3                          11                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK 14(8P23.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED       15     26     11
  DEL PEAK 14(8P23.3) WILD-TYPE     31     40     46
D35V1, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          15                            31
  CLUS_2                          26                            40
  CLUS_3                          11                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(8P23.3) MUTATED       14      5      4      9      2     15
  DEL PEAK 14(8P23.3) WILD-TYPE     16     23     38     12     14     13
                               vv
clus                            CLUS_7
  DEL PEAK 14(8P23.3) MUTATED        3
  DEL PEAK 14(8P23.3) WILD-TYPE      1
D35V2, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          14                            16
  CLUS_2                           5                            23
  CLUS_3                           4                            38
  CLUS_4                           9                            12
  CLUS_5                           2                            14
  CLUS_6                          15                            13
  CLUS_7                           3                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(8P23.3) MUTATED       18     15      9      9
  DEL PEAK 14(8P23.3) WILD-TYPE     21     30     15     49
D35V3, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          18                            21
  CLUS_2                          15                            30
  CLUS_3                           9                            15
  CLUS_4                           9                            49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(8P23.3) MUTATED       14     12     16      4      5
  DEL PEAK 14(8P23.3) WILD-TYPE     31     20     17     33     14
D35V4, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          14                            31
  CLUS_2                          12                            20
  CLUS_3                          16                            17
  CLUS_4                           4                            33
  CLUS_5                           5                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED       27     11     12
  DEL PEAK 14(8P23.3) WILD-TYPE     46     60     11
D35V5, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          27                            46
  CLUS_2                          11                            60
  CLUS_3                          12                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(8P23.3) MUTATED       19      5     13      4      9
  DEL PEAK 14(8P23.3) WILD-TYPE     33      9     16      8     51
D35V6, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          19                            33
  CLUS_2                           5                             9
  CLUS_3                          13                            16
  CLUS_4                           4                             8
  CLUS_5                           9                            51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED       26     12     12
  DEL PEAK 14(8P23.3) WILD-TYPE     43     59     15
D35V7, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          26                            43
  CLUS_2                          12                            59
  CLUS_3                          12                            15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(8P23.3) MUTATED       24     13     13
  DEL PEAK 14(8P23.3) WILD-TYPE     38     59     20
D35V8, multiclass
        clus
vv       DEL PEAK 14(8P23.3) MUTATED DEL PEAK 14(8P23.3) WILD-TYPE
  CLUS_1                          24                            38
  CLUS_2                          13                            59
  CLUS_3                          13                            20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK 15(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P23) MUTATED       22     25     11
  DEL PEAK 15(9P23) WILD-TYPE     24     41     46
D36V1, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        22                          24
  CLUS_2                        25                          41
  CLUS_3                        11                          46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 15(9P23) MUTATED       12      9     12     10      3     12      0
  DEL PEAK 15(9P23) WILD-TYPE     18     19     30     11     13     16      4
D36V2, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        12                          18
  CLUS_2                         9                          19
  CLUS_3                        12                          30
  CLUS_4                        10                          11
  CLUS_5                         3                          13
  CLUS_6                        12                          16
  CLUS_7                         0                           4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(9P23) MUTATED       19     15     10     12
  DEL PEAK 15(9P23) WILD-TYPE     20     30     14     46
D36V3, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        19                          20
  CLUS_2                        15                          30
  CLUS_3                        10                          14
  CLUS_4                        12                          46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(9P23) MUTATED       17     12     14     10      3
  DEL PEAK 15(9P23) WILD-TYPE     28     20     19     27     16
D36V4, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        17                          28
  CLUS_2                        12                          20
  CLUS_3                        14                          19
  CLUS_4                        10                          27
  CLUS_5                         3                          16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P23) MUTATED       26     20     12
  DEL PEAK 15(9P23) WILD-TYPE     47     51     11
D36V5, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        26                          47
  CLUS_2                        20                          51
  CLUS_3                        12                          11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(9P23) MUTATED       18      5     17      4     14
  DEL PEAK 15(9P23) WILD-TYPE     34      9     12      8     46
D36V6, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        18                          34
  CLUS_2                         5                           9
  CLUS_3                        17                          12
  CLUS_4                         4                           8
  CLUS_5                        14                          46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P23) MUTATED       24     20     14
  DEL PEAK 15(9P23) WILD-TYPE     45     51     13
D36V7, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        24                          45
  CLUS_2                        20                          51
  CLUS_3                        14                          13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(9P23) MUTATED       21     18     19
  DEL PEAK 15(9P23) WILD-TYPE     41     54     14
D36V8, multiclass
        clus
vv       DEL PEAK 15(9P23) MUTATED DEL PEAK 15(9P23) WILD-TYPE
  CLUS_1                        21                          41
  CLUS_2                        18                          54
  CLUS_3                        19                          14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK 16(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P21.3) MUTATED       27     31     14
  DEL PEAK 16(9P21.3) WILD-TYPE     19     35     43
D37V1, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          27                            19
  CLUS_2                          31                            35
  CLUS_3                          14                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(9P21.3) MUTATED       18     13     12     11      3     14
  DEL PEAK 16(9P21.3) WILD-TYPE     12     15     30     10     13     14
                               vv
clus                            CLUS_7
  DEL PEAK 16(9P21.3) MUTATED        1
  DEL PEAK 16(9P21.3) WILD-TYPE      3
D37V2, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          18                            12
  CLUS_2                          13                            15
  CLUS_3                          12                            30
  CLUS_4                          11                            10
  CLUS_5                           3                            13
  CLUS_6                          14                            14
  CLUS_7                           1                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(9P21.3) MUTATED       23     21     12     13
  DEL PEAK 16(9P21.3) WILD-TYPE     16     24     12     45
D37V3, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          23                            16
  CLUS_2                          21                            24
  CLUS_3                          12                            12
  CLUS_4                          13                            45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(9P21.3) MUTATED       23     14     18     11      3
  DEL PEAK 16(9P21.3) WILD-TYPE     22     18     15     26     16
D37V4, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          23                            22
  CLUS_2                          14                            18
  CLUS_3                          18                            15
  CLUS_4                          11                            26
  CLUS_5                           3                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P21.3) MUTATED       32     24     15
  DEL PEAK 16(9P21.3) WILD-TYPE     41     47      8
D37V5, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          32                            41
  CLUS_2                          24                            47
  CLUS_3                          15                             8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(9P21.3) MUTATED       25      9     19      3     15
  DEL PEAK 16(9P21.3) WILD-TYPE     27      5     10      9     45
D37V6, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          25                            27
  CLUS_2                           9                             5
  CLUS_3                          19                            10
  CLUS_4                           3                             9
  CLUS_5                          15                            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P21.3) MUTATED       30     22     19
  DEL PEAK 16(9P21.3) WILD-TYPE     39     49      8
D37V7, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          30                            39
  CLUS_2                          22                            49
  CLUS_3                          19                             8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(9P21.3) MUTATED       26     23     22
  DEL PEAK 16(9P21.3) WILD-TYPE     36     49     11
D37V8, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          26                            36
  CLUS_2                          23                            49
  CLUS_3                          22                            11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 17(9Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.3) MUTATED        7     29     10
  DEL PEAK 17(9Q34.3) WILD-TYPE     39     37     47
D38V1, multiclass
        clus
vv       DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                           7                            39
  CLUS_2                          29                            37
  CLUS_3                          10                            47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(9Q34.3) MUTATED        8      2     16      6      4      9
  DEL PEAK 17(9Q34.3) WILD-TYPE     22     26     26     15     12     19
                               vv
clus                            CLUS_7
  DEL PEAK 17(9Q34.3) MUTATED        1
  DEL PEAK 17(9Q34.3) WILD-TYPE      3
D38V2, multiclass
        clus
vv       DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                           8                            22
  CLUS_2                           2                            26
  CLUS_3                          16                            26
  CLUS_4                           6                            15
  CLUS_5                           4                            12
  CLUS_6                           9                            19
  CLUS_7                           1                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(9Q34.3) MUTATED       10      7      8     20
  DEL PEAK 17(9Q34.3) WILD-TYPE     29     38     16     38
D38V3, multiclass
        clus
vv       DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                          10                            29
  CLUS_2                           7                            38
  CLUS_3                           8                            16
  CLUS_4                          20                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(9Q34.3) MUTATED        7      9      9     12      8
  DEL PEAK 17(9Q34.3) WILD-TYPE     38     23     24     25     11
D38V4, multiclass
        clus
vv       DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                           7                            38
  CLUS_2                           9                            23
  CLUS_3                           9                            24
  CLUS_4                          12                            25
  CLUS_5                           8                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.3) MUTATED       17     25      4
  DEL PEAK 17(9Q34.3) WILD-TYPE     56     46     19
D38V5, multiclass
        clus
vv       DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                          17                            56
  CLUS_2                          25                            46
  CLUS_3                           4                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(9Q34.3) MUTATED       10      6      4      5     21
  DEL PEAK 17(9Q34.3) WILD-TYPE     42      8     25      7     39
D38V6, multiclass
        clus
vv       DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                          10                            42
  CLUS_2                           6                             8
  CLUS_3                           4                            25
  CLUS_4                           5                             7
  CLUS_5                          21                            39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.3) MUTATED       15     26      5
  DEL PEAK 17(9Q34.3) WILD-TYPE     54     45     22
D38V7, multiclass
        clus
vv       DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                          15                            54
  CLUS_2                          26                            45
  CLUS_3                           5                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(9Q34.3) MUTATED       14     27      5
  DEL PEAK 17(9Q34.3) WILD-TYPE     48     45     28
D38V8, multiclass
        clus
vv       DEL PEAK 17(9Q34.3) MUTATED DEL PEAK 17(9Q34.3) WILD-TYPE
  CLUS_1                          14                            48
  CLUS_2                          27                            45
  CLUS_3                           5                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 18(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       18     45     25
  DEL PEAK 18(10P15.3) WILD-TYPE     28     21     32
D39V1, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           18                             28
  CLUS_2                           45                             21
  CLUS_3                           25                             32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(10P15.3) MUTATED       20      6     28     10      4     18
  DEL PEAK 18(10P15.3) WILD-TYPE     10     22     14     11     12     10
                                vv
clus                             CLUS_7
  DEL PEAK 18(10P15.3) MUTATED        2
  DEL PEAK 18(10P15.3) WILD-TYPE      2
D39V2, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           20                             10
  CLUS_2                            6                             22
  CLUS_3                           28                             14
  CLUS_4                           10                             11
  CLUS_5                            4                             12
  CLUS_6                           18                             10
  CLUS_7                            2                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(10P15.3) MUTATED       22     20     12     33
  DEL PEAK 18(10P15.3) WILD-TYPE     17     25     12     25
D39V3, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           22                             17
  CLUS_2                           20                             25
  CLUS_3                           12                             12
  CLUS_4                           33                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(10P15.3) MUTATED       19     16     20     26      6
  DEL PEAK 18(10P15.3) WILD-TYPE     26     16     13     11     13
D39V4, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           19                             26
  CLUS_2                           16                             16
  CLUS_3                           20                             13
  CLUS_4                           26                             11
  CLUS_5                            6                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       37     39     11
  DEL PEAK 18(10P15.3) WILD-TYPE     36     32     12
D39V5, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           37                             36
  CLUS_2                           39                             32
  CLUS_3                           11                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(10P15.3) MUTATED       28      8     12      5     34
  DEL PEAK 18(10P15.3) WILD-TYPE     24      6     17      7     26
D39V6, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           28                             24
  CLUS_2                            8                              6
  CLUS_3                           12                             17
  CLUS_4                            5                              7
  CLUS_5                           34                             26
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       34     39     14
  DEL PEAK 18(10P15.3) WILD-TYPE     35     32     13
D39V7, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           34                             35
  CLUS_2                           39                             32
  CLUS_3                           14                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(10P15.3) MUTATED       31     40     16
  DEL PEAK 18(10P15.3) WILD-TYPE     31     32     17
D39V8, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           31                             31
  CLUS_2                           40                             32
  CLUS_3                           16                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 19(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q23.31) MUTATED        8     54     33
  DEL PEAK 19(10Q23.31) WILD-TYPE     38     12     24
D40V1, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                             8                              38
  CLUS_2                            54                              12
  CLUS_3                            33                              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(10Q23.31) MUTATED       17      4     39      5      6     21
  DEL PEAK 19(10Q23.31) WILD-TYPE     13     24      3     16     10      7
                                 vv
clus                              CLUS_7
  DEL PEAK 19(10Q23.31) MUTATED        3
  DEL PEAK 19(10Q23.31) WILD-TYPE      1
D40V2, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            17                              13
  CLUS_2                             4                              24
  CLUS_3                            39                               3
  CLUS_4                             5                              16
  CLUS_5                             6                              10
  CLUS_6                            21                               7
  CLUS_7                             3                               1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(10Q23.31) MUTATED       24     15      6     48
  DEL PEAK 19(10Q23.31) WILD-TYPE     15     30     18     10
D40V3, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            24                              15
  CLUS_2                            15                              30
  CLUS_3                             6                              18
  CLUS_4                            48                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(10Q23.31) MUTATED       18      8     20     36     11
  DEL PEAK 19(10Q23.31) WILD-TYPE     27     24     13      1      8
D40V4, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            18                              27
  CLUS_2                             8                              24
  CLUS_3                            20                              13
  CLUS_4                            36                               1
  CLUS_5                            11                               8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q23.31) MUTATED       29     52     13
  DEL PEAK 19(10Q23.31) WILD-TYPE     44     19     10
D40V5, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            29                              44
  CLUS_2                            52                              19
  CLUS_3                            13                              10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(10Q23.31) MUTATED       24      6     14      2     48
  DEL PEAK 19(10Q23.31) WILD-TYPE     28      8     15     10     12
D40V6, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            24                              28
  CLUS_2                             6                               8
  CLUS_3                            14                              15
  CLUS_4                             2                              10
  CLUS_5                            48                              12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q23.31) MUTATED       26     54     14
  DEL PEAK 19(10Q23.31) WILD-TYPE     43     17     13
D40V7, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            26                              43
  CLUS_2                            54                              17
  CLUS_3                            14                              13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(10Q23.31) MUTATED       24     52     18
  DEL PEAK 19(10Q23.31) WILD-TYPE     38     20     15
D40V8, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            24                              38
  CLUS_2                            52                              20
  CLUS_3                            18                              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 20(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11P15.5) MUTATED       21     40     12
  DEL PEAK 20(11P15.5) WILD-TYPE     25     26     45
D41V1, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           21                             25
  CLUS_2                           40                             26
  CLUS_3                           12                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(11P15.5) MUTATED       19      6     22      6      2     16
  DEL PEAK 20(11P15.5) WILD-TYPE     11     22     20     15     14     12
                                vv
clus                             CLUS_7
  DEL PEAK 20(11P15.5) MUTATED        2
  DEL PEAK 20(11P15.5) WILD-TYPE      2
D41V2, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           19                             11
  CLUS_2                            6                             22
  CLUS_3                           22                             20
  CLUS_4                            6                             15
  CLUS_5                            2                             14
  CLUS_6                           16                             12
  CLUS_7                            2                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(11P15.5) MUTATED       18     20      9     26
  DEL PEAK 20(11P15.5) WILD-TYPE     21     25     15     32
D41V3, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           18                             21
  CLUS_2                           20                             25
  CLUS_3                            9                             15
  CLUS_4                           26                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(11P15.5) MUTATED       19     11     16     20      7
  DEL PEAK 20(11P15.5) WILD-TYPE     26     21     17     17     12
D41V4, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           19                             26
  CLUS_2                           11                             21
  CLUS_3                           16                             17
  CLUS_4                           20                             17
  CLUS_5                            7                             12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11P15.5) MUTATED       28     31     12
  DEL PEAK 20(11P15.5) WILD-TYPE     45     40     11
D41V5, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           28                             45
  CLUS_2                           31                             40
  CLUS_3                           12                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(11P15.5) MUTATED       21      6     14      4     26
  DEL PEAK 20(11P15.5) WILD-TYPE     31      8     15      8     34
D41V6, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           21                             31
  CLUS_2                            6                              8
  CLUS_3                           14                             15
  CLUS_4                            4                              8
  CLUS_5                           26                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11P15.5) MUTATED       26     32     13
  DEL PEAK 20(11P15.5) WILD-TYPE     43     39     14
D41V7, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           26                             43
  CLUS_2                           32                             39
  CLUS_3                           13                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(11P15.5) MUTATED       25     31     15
  DEL PEAK 20(11P15.5) WILD-TYPE     37     41     18
D41V8, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           25                             37
  CLUS_2                           31                             41
  CLUS_3                           15                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 21(11Q24.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11Q24.3) MUTATED       27     41      7
  DEL PEAK 21(11Q24.3) WILD-TYPE     19     25     50
D42V1, multiclass
        clus
vv       DEL PEAK 21(11Q24.3) MUTATED DEL PEAK 21(11Q24.3) WILD-TYPE
  CLUS_1                           27                             19
  CLUS_2                           41                             25
  CLUS_3                            7                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(11Q24.3) MUTATED       24      9     13      8      2     17
  DEL PEAK 21(11Q24.3) WILD-TYPE      6     19     29     13     14     11
                                vv
clus                             CLUS_7
  DEL PEAK 21(11Q24.3) MUTATED        2
  DEL PEAK 21(11Q24.3) WILD-TYPE      2
D42V2, multiclass
        clus
vv       DEL PEAK 21(11Q24.3) MUTATED DEL PEAK 21(11Q24.3) WILD-TYPE
  CLUS_1                           24                              6
  CLUS_2                            9                             19
  CLUS_3                           13                             29
  CLUS_4                            8                             13
  CLUS_5                            2                             14
  CLUS_6                           17                             11
  CLUS_7                            2                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(11Q24.3) MUTATED       20     26     10     17
  DEL PEAK 21(11Q24.3) WILD-TYPE     19     19     14     41
D42V3, multiclass
        clus
vv       DEL PEAK 21(11Q24.3) MUTATED DEL PEAK 21(11Q24.3) WILD-TYPE
  CLUS_1                           20                             19
  CLUS_2                           26                             19
  CLUS_3                           10                             14
  CLUS_4                           17                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(11Q24.3) MUTATED       29     12     15     12      5
  DEL PEAK 21(11Q24.3) WILD-TYPE     16     20     18     25     14
D42V4, multiclass
        clus
vv       DEL PEAK 21(11Q24.3) MUTATED DEL PEAK 21(11Q24.3) WILD-TYPE
  CLUS_1                           29                             16
  CLUS_2                           12                             20
  CLUS_3                           15                             18
  CLUS_4                           12                             25
  CLUS_5                            5                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11Q24.3) MUTATED       36     22     15
  DEL PEAK 21(11Q24.3) WILD-TYPE     37     49      8
D42V5, multiclass
        clus
vv       DEL PEAK 21(11Q24.3) MUTATED DEL PEAK 21(11Q24.3) WILD-TYPE
  CLUS_1                           36                             37
  CLUS_2                           22                             49
  CLUS_3                           15                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(11Q24.3) MUTATED       28      8     17      4     16
  DEL PEAK 21(11Q24.3) WILD-TYPE     24      6     12      8     44
D42V6, multiclass
        clus
vv       DEL PEAK 21(11Q24.3) MUTATED DEL PEAK 21(11Q24.3) WILD-TYPE
  CLUS_1                           28                             24
  CLUS_2                            8                              6
  CLUS_3                           17                             12
  CLUS_4                            4                              8
  CLUS_5                           16                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11Q24.3) MUTATED       34     21     18
  DEL PEAK 21(11Q24.3) WILD-TYPE     35     50      9
D42V7, multiclass
        clus
vv       DEL PEAK 21(11Q24.3) MUTATED DEL PEAK 21(11Q24.3) WILD-TYPE
  CLUS_1                           34                             35
  CLUS_2                           21                             50
  CLUS_3                           18                              9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(11Q24.3) MUTATED       31     24     18
  DEL PEAK 21(11Q24.3) WILD-TYPE     31     48     15
D42V8, multiclass
        clus
vv       DEL PEAK 21(11Q24.3) MUTATED DEL PEAK 21(11Q24.3) WILD-TYPE
  CLUS_1                           31                             31
  CLUS_2                           24                             48
  CLUS_3                           18                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 22(12P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12P13.1) MUTATED       15     32     10
  DEL PEAK 22(12P13.1) WILD-TYPE     31     34     47
D43V1, multiclass
        clus
vv       DEL PEAK 22(12P13.1) MUTATED DEL PEAK 22(12P13.1) WILD-TYPE
  CLUS_1                           15                             31
  CLUS_2                           32                             34
  CLUS_3                           10                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(12P13.1) MUTATED       18      5     13      3      2     15
  DEL PEAK 22(12P13.1) WILD-TYPE     12     23     29     18     14     13
                                vv
clus                             CLUS_7
  DEL PEAK 22(12P13.1) MUTATED        1
  DEL PEAK 22(12P13.1) WILD-TYPE      3
D43V2, multiclass
        clus
vv       DEL PEAK 22(12P13.1) MUTATED DEL PEAK 22(12P13.1) WILD-TYPE
  CLUS_1                           18                             12
  CLUS_2                            5                             23
  CLUS_3                           13                             29
  CLUS_4                            3                             18
  CLUS_5                            2                             14
  CLUS_6                           15                             13
  CLUS_7                            1                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(12P13.1) MUTATED       15     21      3     16
  DEL PEAK 22(12P13.1) WILD-TYPE     24     24     21     42
D43V3, multiclass
        clus
vv       DEL PEAK 22(12P13.1) MUTATED DEL PEAK 22(12P13.1) WILD-TYPE
  CLUS_1                           15                             24
  CLUS_2                           21                             24
  CLUS_3                            3                             21
  CLUS_4                           16                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(12P13.1) MUTATED       20      7     13     11      4
  DEL PEAK 22(12P13.1) WILD-TYPE     25     25     20     26     15
D43V4, multiclass
        clus
vv       DEL PEAK 22(12P13.1) MUTATED DEL PEAK 22(12P13.1) WILD-TYPE
  CLUS_1                           20                             25
  CLUS_2                            7                             25
  CLUS_3                           13                             20
  CLUS_4                           11                             26
  CLUS_5                            4                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12P13.1) MUTATED       29     17     10
  DEL PEAK 22(12P13.1) WILD-TYPE     44     54     13
D43V5, multiclass
        clus
vv       DEL PEAK 22(12P13.1) MUTATED DEL PEAK 22(12P13.1) WILD-TYPE
  CLUS_1                           29                             44
  CLUS_2                           17                             54
  CLUS_3                           10                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(12P13.1) MUTATED       25      3     10      2     16
  DEL PEAK 22(12P13.1) WILD-TYPE     27     11     19     10     44
D43V6, multiclass
        clus
vv       DEL PEAK 22(12P13.1) MUTATED DEL PEAK 22(12P13.1) WILD-TYPE
  CLUS_1                           25                             27
  CLUS_2                            3                             11
  CLUS_3                           10                             19
  CLUS_4                            2                             10
  CLUS_5                           16                             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12P13.1) MUTATED       28     18     10
  DEL PEAK 22(12P13.1) WILD-TYPE     41     53     17
D43V7, multiclass
        clus
vv       DEL PEAK 22(12P13.1) MUTATED DEL PEAK 22(12P13.1) WILD-TYPE
  CLUS_1                           28                             41
  CLUS_2                           18                             53
  CLUS_3                           10                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(12P13.1) MUTATED       26     18     12
  DEL PEAK 22(12P13.1) WILD-TYPE     36     54     21
D43V8, multiclass
        clus
vv       DEL PEAK 22(12P13.1) MUTATED DEL PEAK 22(12P13.1) WILD-TYPE
  CLUS_1                           26                             36
  CLUS_2                           18                             54
  CLUS_3                           12                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 23(12Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(12Q12) MUTATED        9     19      6
  DEL PEAK 23(12Q12) WILD-TYPE     37     47     51
D44V1, multiclass
        clus
vv       DEL PEAK 23(12Q12) MUTATED DEL PEAK 23(12Q12) WILD-TYPE
  CLUS_1                          9                           37
  CLUS_2                         19                           47
  CLUS_3                          6                           51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 23(12Q12) MUTATED        9      3     13      2      0      7      0
  DEL PEAK 23(12Q12) WILD-TYPE     21     25     29     19     16     21      4
D44V2, multiclass
        clus
vv       DEL PEAK 23(12Q12) MUTATED DEL PEAK 23(12Q12) WILD-TYPE
  CLUS_1                          9                           21
  CLUS_2                          3                           25
  CLUS_3                         13                           29
  CLUS_4                          2                           19
  CLUS_5                          0                           16
  CLUS_6                          7                           21
  CLUS_7                          0                            4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(12Q12) MUTATED        8      9      3     13
  DEL PEAK 23(12Q12) WILD-TYPE     31     36     21     45
D44V3, multiclass
        clus
vv       DEL PEAK 23(12Q12) MUTATED DEL PEAK 23(12Q12) WILD-TYPE
  CLUS_1                          8                           31
  CLUS_2                          9                           36
  CLUS_3                          3                           21
  CLUS_4                         13                           45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(12Q12) MUTATED       11      3      6     11      2
  DEL PEAK 23(12Q12) WILD-TYPE     34     29     27     26     17
D44V4, multiclass
        clus
vv       DEL PEAK 23(12Q12) MUTATED DEL PEAK 23(12Q12) WILD-TYPE
  CLUS_1                         11                           34
  CLUS_2                          3                           29
  CLUS_3                          6                           27
  CLUS_4                         11                           26
  CLUS_5                          2                           17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(12Q12) MUTATED       12     14      8
  DEL PEAK 23(12Q12) WILD-TYPE     61     57     15
D44V5, multiclass
        clus
vv       DEL PEAK 23(12Q12) MUTATED DEL PEAK 23(12Q12) WILD-TYPE
  CLUS_1                         12                           61
  CLUS_2                         14                           57
  CLUS_3                          8                           15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(12Q12) MUTATED       10      1      8      2     13
  DEL PEAK 23(12Q12) WILD-TYPE     42     13     21     10     47
D44V6, multiclass
        clus
vv       DEL PEAK 23(12Q12) MUTATED DEL PEAK 23(12Q12) WILD-TYPE
  CLUS_1                         10                           42
  CLUS_2                          1                           13
  CLUS_3                          8                           21
  CLUS_4                          2                           10
  CLUS_5                         13                           47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(12Q12) MUTATED       12     15      7
  DEL PEAK 23(12Q12) WILD-TYPE     57     56     20
D44V7, multiclass
        clus
vv       DEL PEAK 23(12Q12) MUTATED DEL PEAK 23(12Q12) WILD-TYPE
  CLUS_1                         12                           57
  CLUS_2                         15                           56
  CLUS_3                          7                           20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(12Q12) MUTATED       11     14      9
  DEL PEAK 23(12Q12) WILD-TYPE     51     58     24
D44V8, multiclass
        clus
vv       DEL PEAK 23(12Q12) MUTATED DEL PEAK 23(12Q12) WILD-TYPE
  CLUS_1                         11                           51
  CLUS_2                         14                           58
  CLUS_3                          9                           24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 24(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(13Q14.2) MUTATED       23     63     35
  DEL PEAK 24(13Q14.2) WILD-TYPE     23      3     22
D45V1, multiclass
        clus
vv       DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE
  CLUS_1                           23                             23
  CLUS_2                           63                              3
  CLUS_3                           35                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(13Q14.2) MUTATED       24     11     41      9      7     25
  DEL PEAK 24(13Q14.2) WILD-TYPE      6     17      1     12      9      3
                                vv
clus                             CLUS_7
  DEL PEAK 24(13Q14.2) MUTATED        4
  DEL PEAK 24(13Q14.2) WILD-TYPE      0
D45V2, multiclass
        clus
vv       DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE
  CLUS_1                           24                              6
  CLUS_2                           11                             17
  CLUS_3                           41                              1
  CLUS_4                            9                             12
  CLUS_5                            7                              9
  CLUS_6                           25                              3
  CLUS_7                            4                              0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(13Q14.2) MUTATED       31     24     12     51
  DEL PEAK 24(13Q14.2) WILD-TYPE      8     21     12      7
D45V3, multiclass
        clus
vv       DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE
  CLUS_1                           31                              8
  CLUS_2                           24                             21
  CLUS_3                           12                             12
  CLUS_4                           51                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(13Q14.2) MUTATED       27     13     26     36     16
  DEL PEAK 24(13Q14.2) WILD-TYPE     18     19      7      1      3
D45V4, multiclass
        clus
vv       DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE
  CLUS_1                           27                             18
  CLUS_2                           13                             19
  CLUS_3                           26                              7
  CLUS_4                           36                              1
  CLUS_5                           16                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(13Q14.2) MUTATED       43     60     16
  DEL PEAK 24(13Q14.2) WILD-TYPE     30     11      7
D45V5, multiclass
        clus
vv       DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE
  CLUS_1                           43                             30
  CLUS_2                           60                             11
  CLUS_3                           16                              7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(13Q14.2) MUTATED       34      9     20      4     52
  DEL PEAK 24(13Q14.2) WILD-TYPE     18      5      9      8      8
D45V6, multiclass
        clus
vv       DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE
  CLUS_1                           34                             18
  CLUS_2                            9                              5
  CLUS_3                           20                              9
  CLUS_4                            4                              8
  CLUS_5                           52                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(13Q14.2) MUTATED       40     60     19
  DEL PEAK 24(13Q14.2) WILD-TYPE     29     11      8
D45V7, multiclass
        clus
vv       DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE
  CLUS_1                           40                             29
  CLUS_2                           60                             11
  CLUS_3                           19                              8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(13Q14.2) MUTATED       36     60     23
  DEL PEAK 24(13Q14.2) WILD-TYPE     26     12     10
D45V8, multiclass
        clus
vv       DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE
  CLUS_1                           36                             26
  CLUS_2                           60                             12
  CLUS_3                           23                             10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 25(14Q24.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(14Q24.1) MUTATED       15     25     16
  DEL PEAK 25(14Q24.1) WILD-TYPE     31     41     41
D46V1, multiclass
        clus
vv       DEL PEAK 25(14Q24.1) MUTATED DEL PEAK 25(14Q24.1) WILD-TYPE
  CLUS_1                           15                             31
  CLUS_2                           25                             41
  CLUS_3                           16                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(14Q24.1) MUTATED       14      4     11      5      9     11
  DEL PEAK 25(14Q24.1) WILD-TYPE     16     24     31     16      7     17
                                vv
clus                             CLUS_7
  DEL PEAK 25(14Q24.1) MUTATED        2
  DEL PEAK 25(14Q24.1) WILD-TYPE      2
D46V2, multiclass
        clus
vv       DEL PEAK 25(14Q24.1) MUTATED DEL PEAK 25(14Q24.1) WILD-TYPE
  CLUS_1                           14                             16
  CLUS_2                            4                             24
  CLUS_3                           11                             31
  CLUS_4                            5                             16
  CLUS_5                            9                              7
  CLUS_6                           11                             17
  CLUS_7                            2                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(14Q24.1) MUTATED       11     16      7     22
  DEL PEAK 25(14Q24.1) WILD-TYPE     28     29     17     36
D46V3, multiclass
        clus
vv       DEL PEAK 25(14Q24.1) MUTATED DEL PEAK 25(14Q24.1) WILD-TYPE
  CLUS_1                           11                             28
  CLUS_2                           16                             29
  CLUS_3                            7                             17
  CLUS_4                           22                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(14Q24.1) MUTATED       17      7      9      8     15
  DEL PEAK 25(14Q24.1) WILD-TYPE     28     25     24     29      4
D46V4, multiclass
        clus
vv       DEL PEAK 25(14Q24.1) MUTATED DEL PEAK 25(14Q24.1) WILD-TYPE
  CLUS_1                           17                             28
  CLUS_2                            7                             25
  CLUS_3                            9                             24
  CLUS_4                            8                             29
  CLUS_5                           15                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(14Q24.1) MUTATED       19     29      8
  DEL PEAK 25(14Q24.1) WILD-TYPE     54     42     15
D46V5, multiclass
        clus
vv       DEL PEAK 25(14Q24.1) MUTATED DEL PEAK 25(14Q24.1) WILD-TYPE
  CLUS_1                           19                             54
  CLUS_2                           29                             42
  CLUS_3                            8                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(14Q24.1) MUTATED       15      9      8      1     23
  DEL PEAK 25(14Q24.1) WILD-TYPE     37      5     21     11     37
D46V6, multiclass
        clus
vv       DEL PEAK 25(14Q24.1) MUTATED DEL PEAK 25(14Q24.1) WILD-TYPE
  CLUS_1                           15                             37
  CLUS_2                            9                              5
  CLUS_3                            8                             21
  CLUS_4                            1                             11
  CLUS_5                           23                             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(14Q24.1) MUTATED       16     30     10
  DEL PEAK 25(14Q24.1) WILD-TYPE     53     41     17
D46V7, multiclass
        clus
vv       DEL PEAK 25(14Q24.1) MUTATED DEL PEAK 25(14Q24.1) WILD-TYPE
  CLUS_1                           16                             53
  CLUS_2                           30                             41
  CLUS_3                           10                             17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(14Q24.1) MUTATED       16     31      9
  DEL PEAK 25(14Q24.1) WILD-TYPE     46     41     24
D46V8, multiclass
        clus
vv       DEL PEAK 25(14Q24.1) MUTATED DEL PEAK 25(14Q24.1) WILD-TYPE
  CLUS_1                           16                             46
  CLUS_2                           31                             41
  CLUS_3                            9                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 26(15Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(15Q11.2) MUTATED       12     13      7
  DEL PEAK 26(15Q11.2) WILD-TYPE     34     53     50
D47V1, multiclass
        clus
vv       DEL PEAK 26(15Q11.2) MUTATED DEL PEAK 26(15Q11.2) WILD-TYPE
  CLUS_1                           12                             34
  CLUS_2                           13                             53
  CLUS_3                            7                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(15Q11.2) MUTATED        7      6      2      3      3     10
  DEL PEAK 26(15Q11.2) WILD-TYPE     23     22     40     18     13     18
                                vv
clus                             CLUS_7
  DEL PEAK 26(15Q11.2) MUTATED        1
  DEL PEAK 26(15Q11.2) WILD-TYPE      3
D47V2, multiclass
        clus
vv       DEL PEAK 26(15Q11.2) MUTATED DEL PEAK 26(15Q11.2) WILD-TYPE
  CLUS_1                            7                             23
  CLUS_2                            6                             22
  CLUS_3                            2                             40
  CLUS_4                            3                             18
  CLUS_5                            3                             13
  CLUS_6                           10                             18
  CLUS_7                            1                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(15Q11.2) MUTATED       17      6      3      5
  DEL PEAK 26(15Q11.2) WILD-TYPE     22     39     21     53
D47V3, multiclass
        clus
vv       DEL PEAK 26(15Q11.2) MUTATED DEL PEAK 26(15Q11.2) WILD-TYPE
  CLUS_1                           17                             22
  CLUS_2                            6                             39
  CLUS_3                            3                             21
  CLUS_4                            5                             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(15Q11.2) MUTATED       10      5     12      1      3
  DEL PEAK 26(15Q11.2) WILD-TYPE     35     27     21     36     16
D47V4, multiclass
        clus
vv       DEL PEAK 26(15Q11.2) MUTATED DEL PEAK 26(15Q11.2) WILD-TYPE
  CLUS_1                           10                             35
  CLUS_2                            5                             27
  CLUS_3                           12                             21
  CLUS_4                            1                             36
  CLUS_5                            3                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(15Q11.2) MUTATED       17      7      8
  DEL PEAK 26(15Q11.2) WILD-TYPE     56     64     15
D47V5, multiclass
        clus
vv       DEL PEAK 26(15Q11.2) MUTATED DEL PEAK 26(15Q11.2) WILD-TYPE
  CLUS_1                           17                             56
  CLUS_2                            7                             64
  CLUS_3                            8                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(15Q11.2) MUTATED       14      3      9      1      5
  DEL PEAK 26(15Q11.2) WILD-TYPE     38     11     20     11     55
D47V6, multiclass
        clus
vv       DEL PEAK 26(15Q11.2) MUTATED DEL PEAK 26(15Q11.2) WILD-TYPE
  CLUS_1                           14                             38
  CLUS_2                            3                             11
  CLUS_3                            9                             20
  CLUS_4                            1                             11
  CLUS_5                            5                             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(15Q11.2) MUTATED       17      7      8
  DEL PEAK 26(15Q11.2) WILD-TYPE     52     64     19
D47V7, multiclass
        clus
vv       DEL PEAK 26(15Q11.2) MUTATED DEL PEAK 26(15Q11.2) WILD-TYPE
  CLUS_1                           17                             52
  CLUS_2                            7                             64
  CLUS_3                            8                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(15Q11.2) MUTATED       14      8     10
  DEL PEAK 26(15Q11.2) WILD-TYPE     48     64     23
D47V8, multiclass
        clus
vv       DEL PEAK 26(15Q11.2) MUTATED DEL PEAK 26(15Q11.2) WILD-TYPE
  CLUS_1                           14                             48
  CLUS_2                            8                             64
  CLUS_3                           10                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 27(16Q12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(16Q12.1) MUTATED       13     52     30
  DEL PEAK 27(16Q12.1) WILD-TYPE     33     14     27
D48V1, multiclass
        clus
vv       DEL PEAK 27(16Q12.1) MUTATED DEL PEAK 27(16Q12.1) WILD-TYPE
  CLUS_1                           13                             33
  CLUS_2                           52                             14
  CLUS_3                           30                             27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(16Q12.1) MUTATED       20      7     31      8      8     19
  DEL PEAK 27(16Q12.1) WILD-TYPE     10     21     11     13      8      9
                                vv
clus                             CLUS_7
  DEL PEAK 27(16Q12.1) MUTATED        2
  DEL PEAK 27(16Q12.1) WILD-TYPE      2
D48V2, multiclass
        clus
vv       DEL PEAK 27(16Q12.1) MUTATED DEL PEAK 27(16Q12.1) WILD-TYPE
  CLUS_1                           20                             10
  CLUS_2                            7                             21
  CLUS_3                           31                             11
  CLUS_4                            8                             13
  CLUS_5                            8                              8
  CLUS_6                           19                              9
  CLUS_7                            2                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(16Q12.1) MUTATED       24     21      9     40
  DEL PEAK 27(16Q12.1) WILD-TYPE     15     24     15     18
D48V3, multiclass
        clus
vv       DEL PEAK 27(16Q12.1) MUTATED DEL PEAK 27(16Q12.1) WILD-TYPE
  CLUS_1                           24                             15
  CLUS_2                           21                             24
  CLUS_3                            9                             15
  CLUS_4                           40                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(16Q12.1) MUTATED       24     11     19     26     14
  DEL PEAK 27(16Q12.1) WILD-TYPE     21     21     14     11      5
D48V4, multiclass
        clus
vv       DEL PEAK 27(16Q12.1) MUTATED DEL PEAK 27(16Q12.1) WILD-TYPE
  CLUS_1                           24                             21
  CLUS_2                           11                             21
  CLUS_3                           19                             14
  CLUS_4                           26                             11
  CLUS_5                           14                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(16Q12.1) MUTATED       35     46     13
  DEL PEAK 27(16Q12.1) WILD-TYPE     38     25     10
D48V5, multiclass
        clus
vv       DEL PEAK 27(16Q12.1) MUTATED DEL PEAK 27(16Q12.1) WILD-TYPE
  CLUS_1                           35                             38
  CLUS_2                           46                             25
  CLUS_3                           13                             10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(16Q12.1) MUTATED       27      7     14      4     42
  DEL PEAK 27(16Q12.1) WILD-TYPE     25      7     15      8     18
D48V6, multiclass
        clus
vv       DEL PEAK 27(16Q12.1) MUTATED DEL PEAK 27(16Q12.1) WILD-TYPE
  CLUS_1                           27                             25
  CLUS_2                            7                              7
  CLUS_3                           14                             15
  CLUS_4                            4                              8
  CLUS_5                           42                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(16Q12.1) MUTATED       31     48     15
  DEL PEAK 27(16Q12.1) WILD-TYPE     38     23     12
D48V7, multiclass
        clus
vv       DEL PEAK 27(16Q12.1) MUTATED DEL PEAK 27(16Q12.1) WILD-TYPE
  CLUS_1                           31                             38
  CLUS_2                           48                             23
  CLUS_3                           15                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(16Q12.1) MUTATED       29     47     18
  DEL PEAK 27(16Q12.1) WILD-TYPE     33     25     15
D48V8, multiclass
        clus
vv       DEL PEAK 27(16Q12.1) MUTATED DEL PEAK 27(16Q12.1) WILD-TYPE
  CLUS_1                           29                             33
  CLUS_2                           47                             25
  CLUS_3                           18                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 28(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(16Q23.1) MUTATED       16     50     28
  DEL PEAK 28(16Q23.1) WILD-TYPE     30     16     29
D49V1, multiclass
        clus
vv       DEL PEAK 28(16Q23.1) MUTATED DEL PEAK 28(16Q23.1) WILD-TYPE
  CLUS_1                           16                             30
  CLUS_2                           50                             16
  CLUS_3                           28                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(16Q23.1) MUTATED       18      7     31      8      8     20
  DEL PEAK 28(16Q23.1) WILD-TYPE     12     21     11     13      8      8
                                vv
clus                             CLUS_7
  DEL PEAK 28(16Q23.1) MUTATED        2
  DEL PEAK 28(16Q23.1) WILD-TYPE      2
D49V2, multiclass
        clus
vv       DEL PEAK 28(16Q23.1) MUTATED DEL PEAK 28(16Q23.1) WILD-TYPE
  CLUS_1                           18                             12
  CLUS_2                            7                             21
  CLUS_3                           31                             11
  CLUS_4                            8                             13
  CLUS_5                            8                              8
  CLUS_6                           20                              8
  CLUS_7                            2                              2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(16Q23.1) MUTATED       25     19      9     40
  DEL PEAK 28(16Q23.1) WILD-TYPE     14     26     15     18
D49V3, multiclass
        clus
vv       DEL PEAK 28(16Q23.1) MUTATED DEL PEAK 28(16Q23.1) WILD-TYPE
  CLUS_1                           25                             14
  CLUS_2                           19                             26
  CLUS_3                            9                             15
  CLUS_4                           40                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(16Q23.1) MUTATED       23     10     20     27     13
  DEL PEAK 28(16Q23.1) WILD-TYPE     22     22     13     10      6
D49V4, multiclass
        clus
vv       DEL PEAK 28(16Q23.1) MUTATED DEL PEAK 28(16Q23.1) WILD-TYPE
  CLUS_1                           23                             22
  CLUS_2                           10                             22
  CLUS_3                           20                             13
  CLUS_4                           27                             10
  CLUS_5                           13                              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(16Q23.1) MUTATED       33     48     12
  DEL PEAK 28(16Q23.1) WILD-TYPE     40     23     11
D49V5, multiclass
        clus
vv       DEL PEAK 28(16Q23.1) MUTATED DEL PEAK 28(16Q23.1) WILD-TYPE
  CLUS_1                           33                             40
  CLUS_2                           48                             23
  CLUS_3                           12                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(16Q23.1) MUTATED       24      9     14      4     42
  DEL PEAK 28(16Q23.1) WILD-TYPE     28      5     15      8     18
D49V6, multiclass
        clus
vv       DEL PEAK 28(16Q23.1) MUTATED DEL PEAK 28(16Q23.1) WILD-TYPE
  CLUS_1                           24                             28
  CLUS_2                            9                              5
  CLUS_3                           14                             15
  CLUS_4                            4                              8
  CLUS_5                           42                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(16Q23.1) MUTATED       28     49     16
  DEL PEAK 28(16Q23.1) WILD-TYPE     41     22     11
D49V7, multiclass
        clus
vv       DEL PEAK 28(16Q23.1) MUTATED DEL PEAK 28(16Q23.1) WILD-TYPE
  CLUS_1                           28                             41
  CLUS_2                           49                             22
  CLUS_3                           16                             11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(16Q23.1) MUTATED       26     49     18
  DEL PEAK 28(16Q23.1) WILD-TYPE     36     23     15
D49V8, multiclass
        clus
vv       DEL PEAK 28(16Q23.1) MUTATED DEL PEAK 28(16Q23.1) WILD-TYPE
  CLUS_1                           26                             36
  CLUS_2                           49                             23
  CLUS_3                           18                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 29(17P13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(17P13.1) MUTATED        9     41     32
  DEL PEAK 29(17P13.1) WILD-TYPE     37     25     25
D50V1, multiclass
        clus
vv       DEL PEAK 29(17P13.1) MUTATED DEL PEAK 29(17P13.1) WILD-TYPE
  CLUS_1                            9                             37
  CLUS_2                           41                             25
  CLUS_3                           32                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(17P13.1) MUTATED        9      7     33     10      6     16
  DEL PEAK 29(17P13.1) WILD-TYPE     21     21      9     11     10     12
                                vv
clus                             CLUS_7
  DEL PEAK 29(17P13.1) MUTATED        1
  DEL PEAK 29(17P13.1) WILD-TYPE      3
D50V2, multiclass
        clus
vv       DEL PEAK 29(17P13.1) MUTATED DEL PEAK 29(17P13.1) WILD-TYPE
  CLUS_1                            9                             21
  CLUS_2                            7                             21
  CLUS_3                           33                              9
  CLUS_4                           10                             11
  CLUS_5                            6                             10
  CLUS_6                           16                             12
  CLUS_7                            1                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(17P13.1) MUTATED       21     11      9     39
  DEL PEAK 29(17P13.1) WILD-TYPE     18     34     15     19
D50V3, multiclass
        clus
vv       DEL PEAK 29(17P13.1) MUTATED DEL PEAK 29(17P13.1) WILD-TYPE
  CLUS_1                           21                             18
  CLUS_2                           11                             34
  CLUS_3                            9                             15
  CLUS_4                           39                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(17P13.1) MUTATED       15     12     16     29      8
  DEL PEAK 29(17P13.1) WILD-TYPE     30     20     17      8     11
D50V4, multiclass
        clus
vv       DEL PEAK 29(17P13.1) MUTATED DEL PEAK 29(17P13.1) WILD-TYPE
  CLUS_1                           15                             30
  CLUS_2                           12                             20
  CLUS_3                           16                             17
  CLUS_4                           29                              8
  CLUS_5                            8                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(17P13.1) MUTATED       27     43     10
  DEL PEAK 29(17P13.1) WILD-TYPE     46     28     13
D50V5, multiclass
        clus
vv       DEL PEAK 29(17P13.1) MUTATED DEL PEAK 29(17P13.1) WILD-TYPE
  CLUS_1                           27                             46
  CLUS_2                           43                             28
  CLUS_3                           10                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(17P13.1) MUTATED       15      5     16      5     39
  DEL PEAK 29(17P13.1) WILD-TYPE     37      9     13      7     21
D50V6, multiclass
        clus
vv       DEL PEAK 29(17P13.1) MUTATED DEL PEAK 29(17P13.1) WILD-TYPE
  CLUS_1                           15                             37
  CLUS_2                            5                              9
  CLUS_3                           16                             13
  CLUS_4                            5                              7
  CLUS_5                           39                             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(17P13.1) MUTATED       23     44     13
  DEL PEAK 29(17P13.1) WILD-TYPE     46     27     14
D50V7, multiclass
        clus
vv       DEL PEAK 29(17P13.1) MUTATED DEL PEAK 29(17P13.1) WILD-TYPE
  CLUS_1                           23                             46
  CLUS_2                           44                             27
  CLUS_3                           13                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(17P13.1) MUTATED       17     43     20
  DEL PEAK 29(17P13.1) WILD-TYPE     45     29     13
D50V8, multiclass
        clus
vv       DEL PEAK 29(17P13.1) MUTATED DEL PEAK 29(17P13.1) WILD-TYPE
  CLUS_1                           17                             45
  CLUS_2                           43                             29
  CLUS_3                           20                             13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 30(17Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(17Q11.2) MUTATED       15     31      5
  DEL PEAK 30(17Q11.2) WILD-TYPE     31     35     52
D51V1, multiclass
        clus
vv       DEL PEAK 30(17Q11.2) MUTATED DEL PEAK 30(17Q11.2) WILD-TYPE
  CLUS_1                           15                             31
  CLUS_2                           31                             35
  CLUS_3                            5                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(17Q11.2) MUTATED       17      4      6      8      0     15
  DEL PEAK 30(17Q11.2) WILD-TYPE     13     24     36     13     16     13
                                vv
clus                             CLUS_7
  DEL PEAK 30(17Q11.2) MUTATED        1
  DEL PEAK 30(17Q11.2) WILD-TYPE      3
D51V2, multiclass
        clus
vv       DEL PEAK 30(17Q11.2) MUTATED DEL PEAK 30(17Q11.2) WILD-TYPE
  CLUS_1                           17                             13
  CLUS_2                            4                             24
  CLUS_3                            6                             36
  CLUS_4                            8                             13
  CLUS_5                            0                             16
  CLUS_6                           15                             13
  CLUS_7                            1                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(17Q11.2) MUTATED       18     18      7      7
  DEL PEAK 30(17Q11.2) WILD-TYPE     21     27     17     51
D51V3, multiclass
        clus
vv       DEL PEAK 30(17Q11.2) MUTATED DEL PEAK 30(17Q11.2) WILD-TYPE
  CLUS_1                           18                             21
  CLUS_2                           18                             27
  CLUS_3                            7                             17
  CLUS_4                            7                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(17Q11.2) MUTATED       18     10     15      6      1
  DEL PEAK 30(17Q11.2) WILD-TYPE     27     22     18     31     18
D51V4, multiclass
        clus
vv       DEL PEAK 30(17Q11.2) MUTATED DEL PEAK 30(17Q11.2) WILD-TYPE
  CLUS_1                           18                             27
  CLUS_2                           10                             22
  CLUS_3                           15                             18
  CLUS_4                            6                             31
  CLUS_5                            1                             18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(17Q11.2) MUTATED       28     11     11
  DEL PEAK 30(17Q11.2) WILD-TYPE     45     60     12
D51V5, multiclass
        clus
vv       DEL PEAK 30(17Q11.2) MUTATED DEL PEAK 30(17Q11.2) WILD-TYPE
  CLUS_1                           28                             45
  CLUS_2                           11                             60
  CLUS_3                           11                             12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(17Q11.2) MUTATED       21      4     13      5      7
  DEL PEAK 30(17Q11.2) WILD-TYPE     31     10     16      7     53
D51V6, multiclass
        clus
vv       DEL PEAK 30(17Q11.2) MUTATED DEL PEAK 30(17Q11.2) WILD-TYPE
  CLUS_1                           21                             31
  CLUS_2                            4                             10
  CLUS_3                           13                             16
  CLUS_4                            5                              7
  CLUS_5                            7                             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(17Q11.2) MUTATED       28     10     12
  DEL PEAK 30(17Q11.2) WILD-TYPE     41     61     15
D51V7, multiclass
        clus
vv       DEL PEAK 30(17Q11.2) MUTATED DEL PEAK 30(17Q11.2) WILD-TYPE
  CLUS_1                           28                             41
  CLUS_2                           10                             61
  CLUS_3                           12                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(17Q11.2) MUTATED       25     11     14
  DEL PEAK 30(17Q11.2) WILD-TYPE     37     61     19
D51V8, multiclass
        clus
vv       DEL PEAK 30(17Q11.2) MUTATED DEL PEAK 30(17Q11.2) WILD-TYPE
  CLUS_1                           25                             37
  CLUS_2                           11                             61
  CLUS_3                           14                             19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 31(17Q25.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(17Q25.3) MUTATED       10     28      7
  DEL PEAK 31(17Q25.3) WILD-TYPE     36     38     50
D52V1, multiclass
        clus
vv       DEL PEAK 31(17Q25.3) MUTATED DEL PEAK 31(17Q25.3) WILD-TYPE
  CLUS_1                           10                             36
  CLUS_2                           28                             38
  CLUS_3                            7                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(17Q25.3) MUTATED        9      2     17      2      2     12
  DEL PEAK 31(17Q25.3) WILD-TYPE     21     26     25     19     14     16
                                vv
clus                             CLUS_7
  DEL PEAK 31(17Q25.3) MUTATED        1
  DEL PEAK 31(17Q25.3) WILD-TYPE      3
D52V2, multiclass
        clus
vv       DEL PEAK 31(17Q25.3) MUTATED DEL PEAK 31(17Q25.3) WILD-TYPE
  CLUS_1                            9                             21
  CLUS_2                            2                             26
  CLUS_3                           17                             25
  CLUS_4                            2                             19
  CLUS_5                            2                             14
  CLUS_6                           12                             16
  CLUS_7                            1                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(17Q25.3) MUTATED       13     10      2     20
  DEL PEAK 31(17Q25.3) WILD-TYPE     26     35     22     38
D52V3, multiclass
        clus
vv       DEL PEAK 31(17Q25.3) MUTATED DEL PEAK 31(17Q25.3) WILD-TYPE
  CLUS_1                           13                             26
  CLUS_2                           10                             35
  CLUS_3                            2                             22
  CLUS_4                           20                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(17Q25.3) MUTATED       11      3     11     14      6
  DEL PEAK 31(17Q25.3) WILD-TYPE     34     29     22     23     13
D52V4, multiclass
        clus
vv       DEL PEAK 31(17Q25.3) MUTATED DEL PEAK 31(17Q25.3) WILD-TYPE
  CLUS_1                           11                             34
  CLUS_2                            3                             29
  CLUS_3                           11                             22
  CLUS_4                           14                             23
  CLUS_5                            6                             13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(17Q25.3) MUTATED       17     22      5
  DEL PEAK 31(17Q25.3) WILD-TYPE     56     49     18
D52V5, multiclass
        clus
vv       DEL PEAK 31(17Q25.3) MUTATED DEL PEAK 31(17Q25.3) WILD-TYPE
  CLUS_1                           17                             56
  CLUS_2                           22                             49
  CLUS_3                            5                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(17Q25.3) MUTATED       14      3      7      0     20
  DEL PEAK 31(17Q25.3) WILD-TYPE     38     11     22     12     40
D52V6, multiclass
        clus
vv       DEL PEAK 31(17Q25.3) MUTATED DEL PEAK 31(17Q25.3) WILD-TYPE
  CLUS_1                           14                             38
  CLUS_2                            3                             11
  CLUS_3                            7                             22
  CLUS_4                            0                             12
  CLUS_5                           20                             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(17Q25.3) MUTATED       15     22      7
  DEL PEAK 31(17Q25.3) WILD-TYPE     54     49     20
D52V7, multiclass
        clus
vv       DEL PEAK 31(17Q25.3) MUTATED DEL PEAK 31(17Q25.3) WILD-TYPE
  CLUS_1                           15                             54
  CLUS_2                           22                             49
  CLUS_3                            7                             20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(17Q25.3) MUTATED       14     23      7
  DEL PEAK 31(17Q25.3) WILD-TYPE     48     49     26
D52V8, multiclass
        clus
vv       DEL PEAK 31(17Q25.3) MUTATED DEL PEAK 31(17Q25.3) WILD-TYPE
  CLUS_1                           14                             48
  CLUS_2                           23                             49
  CLUS_3                            7                             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 32(18Q23) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(18Q23) MUTATED       14     31     12
  DEL PEAK 32(18Q23) WILD-TYPE     32     35     45
D53V1, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         14                           32
  CLUS_2                         31                           35
  CLUS_3                         12                           45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DEL PEAK 32(18Q23) MUTATED       13      9     12      4      3     16      0
  DEL PEAK 32(18Q23) WILD-TYPE     17     19     30     17     13     12      4
D53V2, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         13                           17
  CLUS_2                          9                           19
  CLUS_3                         12                           30
  CLUS_4                          4                           17
  CLUS_5                          3                           13
  CLUS_6                         16                           12
  CLUS_7                          0                            4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(18Q23) MUTATED       20     16      4     15
  DEL PEAK 32(18Q23) WILD-TYPE     19     29     20     43
D53V3, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         20                           19
  CLUS_2                         16                           29
  CLUS_3                          4                           20
  CLUS_4                         15                           43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(18Q23) MUTATED       19      6     15     11      4
  DEL PEAK 32(18Q23) WILD-TYPE     26     26     18     26     15
D53V4, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         19                           26
  CLUS_2                          6                           26
  CLUS_3                         15                           18
  CLUS_4                         11                           26
  CLUS_5                          4                           15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(18Q23) MUTATED       24     19     13
  DEL PEAK 32(18Q23) WILD-TYPE     49     52     10
D53V5, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         24                           49
  CLUS_2                         19                           52
  CLUS_3                         13                           10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(18Q23) MUTATED       18      6     15      2     15
  DEL PEAK 32(18Q23) WILD-TYPE     34      8     14     10     45
D53V6, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         18                           34
  CLUS_2                          6                            8
  CLUS_3                         15                           14
  CLUS_4                          2                           10
  CLUS_5                         15                           45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(18Q23) MUTATED       22     19     15
  DEL PEAK 32(18Q23) WILD-TYPE     47     52     12
D53V7, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         22                           47
  CLUS_2                         19                           52
  CLUS_3                         15                           12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(18Q23) MUTATED       20     21     15
  DEL PEAK 32(18Q23) WILD-TYPE     42     51     18
D53V8, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         20                           42
  CLUS_2                         21                           51
  CLUS_3                         15                           18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 33(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(19P13.3) MUTATED        6     32     12
  DEL PEAK 33(19P13.3) WILD-TYPE     40     34     45
D54V1, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                            6                             40
  CLUS_2                           32                             34
  CLUS_3                           12                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(19P13.3) MUTATED        5      1     17      5      5     14
  DEL PEAK 33(19P13.3) WILD-TYPE     25     27     25     16     11     14
                                vv
clus                             CLUS_7
  DEL PEAK 33(19P13.3) MUTATED        3
  DEL PEAK 33(19P13.3) WILD-TYPE      1
D54V2, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                            5                             25
  CLUS_2                            1                             27
  CLUS_3                           17                             25
  CLUS_4                            5                             16
  CLUS_5                            5                             11
  CLUS_6                           14                             14
  CLUS_7                            3                              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(19P13.3) MUTATED       14      6      5     25
  DEL PEAK 33(19P13.3) WILD-TYPE     25     39     19     33
D54V3, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                           14                             25
  CLUS_2                            6                             39
  CLUS_3                            5                             19
  CLUS_4                           25                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(19P13.3) MUTATED        6      8     13     15      8
  DEL PEAK 33(19P13.3) WILD-TYPE     39     24     20     22     11
D54V4, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                            6                             39
  CLUS_2                            8                             24
  CLUS_3                           13                             20
  CLUS_4                           15                             22
  CLUS_5                            8                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(19P13.3) MUTATED       18     28      2
  DEL PEAK 33(19P13.3) WILD-TYPE     55     43     21
D54V5, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                           18                             55
  CLUS_2                           28                             43
  CLUS_3                            2                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(19P13.3) MUTATED       13      6      1      4     24
  DEL PEAK 33(19P13.3) WILD-TYPE     39      8     28      8     36
D54V6, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                           13                             39
  CLUS_2                            6                              8
  CLUS_3                            1                             28
  CLUS_4                            4                              8
  CLUS_5                           24                             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(19P13.3) MUTATED       17     29      2
  DEL PEAK 33(19P13.3) WILD-TYPE     52     42     25
D54V7, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                           17                             52
  CLUS_2                           29                             42
  CLUS_3                            2                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(19P13.3) MUTATED       17     29      2
  DEL PEAK 33(19P13.3) WILD-TYPE     45     43     31
D54V8, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                           17                             45
  CLUS_2                           29                             43
  CLUS_3                            2                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK 34(19Q13.43) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(19Q13.43) MUTATED       11     40     22
  DEL PEAK 34(19Q13.43) WILD-TYPE     35     26     35
D55V1, multiclass
        clus
vv       DEL PEAK 34(19Q13.43) MUTATED DEL PEAK 34(19Q13.43) WILD-TYPE
  CLUS_1                            11                              35
  CLUS_2                            40                              26
  CLUS_3                            22                              35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(19Q13.43) MUTATED       15      4     24      7      7     14
  DEL PEAK 34(19Q13.43) WILD-TYPE     15     24     18     14      9     14
                                 vv
clus                              CLUS_7
  DEL PEAK 34(19Q13.43) MUTATED        2
  DEL PEAK 34(19Q13.43) WILD-TYPE      2
D55V2, multiclass
        clus
vv       DEL PEAK 34(19Q13.43) MUTATED DEL PEAK 34(19Q13.43) WILD-TYPE
  CLUS_1                            15                              15
  CLUS_2                             4                              24
  CLUS_3                            24                              18
  CLUS_4                             7                              14
  CLUS_5                             7                               9
  CLUS_6                            14                              14
  CLUS_7                             2                               2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(19Q13.43) MUTATED       18     15      7     31
  DEL PEAK 34(19Q13.43) WILD-TYPE     21     30     17     27
D55V3, multiclass
        clus
vv       DEL PEAK 34(19Q13.43) MUTATED DEL PEAK 34(19Q13.43) WILD-TYPE
  CLUS_1                            18                              21
  CLUS_2                            15                              30
  CLUS_3                             7                              17
  CLUS_4                            31                              27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(19Q13.43) MUTATED       15     11     14     21     10
  DEL PEAK 34(19Q13.43) WILD-TYPE     30     21     19     16      9
D55V4, multiclass
        clus
vv       DEL PEAK 34(19Q13.43) MUTATED DEL PEAK 34(19Q13.43) WILD-TYPE
  CLUS_1                            15                              30
  CLUS_2                            11                              21
  CLUS_3                            14                              19
  CLUS_4                            21                              16
  CLUS_5                            10                               9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(19Q13.43) MUTATED       26     38      8
  DEL PEAK 34(19Q13.43) WILD-TYPE     47     33     15
D55V5, multiclass
        clus
vv       DEL PEAK 34(19Q13.43) MUTATED DEL PEAK 34(19Q13.43) WILD-TYPE
  CLUS_1                            26                              47
  CLUS_2                            38                              33
  CLUS_3                             8                              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(19Q13.43) MUTATED       22      4     12      1     33
  DEL PEAK 34(19Q13.43) WILD-TYPE     30     10     17     11     27
D55V6, multiclass
        clus
vv       DEL PEAK 34(19Q13.43) MUTATED DEL PEAK 34(19Q13.43) WILD-TYPE
  CLUS_1                            22                              30
  CLUS_2                             4                              10
  CLUS_3                            12                              17
  CLUS_4                             1                              11
  CLUS_5                            33                              27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(19Q13.43) MUTATED       24     38     10
  DEL PEAK 34(19Q13.43) WILD-TYPE     45     33     17
D55V7, multiclass
        clus
vv       DEL PEAK 34(19Q13.43) MUTATED DEL PEAK 34(19Q13.43) WILD-TYPE
  CLUS_1                            24                              45
  CLUS_2                            38                              33
  CLUS_3                            10                              17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(19Q13.43) MUTATED       21     36     15
  DEL PEAK 34(19Q13.43) WILD-TYPE     41     36     18
D55V8, multiclass
        clus
vv       DEL PEAK 34(19Q13.43) MUTATED DEL PEAK 34(19Q13.43) WILD-TYPE
  CLUS_1                            21                              41
  CLUS_2                            36                              36
  CLUS_3                            15                              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK 35(21Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(21Q11.2) MUTATED       10     14      7
  DEL PEAK 35(21Q11.2) WILD-TYPE     36     52     50
D56V1, multiclass
        clus
vv       DEL PEAK 35(21Q11.2) MUTATED DEL PEAK 35(21Q11.2) WILD-TYPE
  CLUS_1                           10                             36
  CLUS_2                           14                             52
  CLUS_3                            7                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(21Q11.2) MUTATED        6      4      6      4      1      9
  DEL PEAK 35(21Q11.2) WILD-TYPE     24     24     36     17     15     19
                                vv
clus                             CLUS_7
  DEL PEAK 35(21Q11.2) MUTATED        1
  DEL PEAK 35(21Q11.2) WILD-TYPE      3
D56V2, multiclass
        clus
vv       DEL PEAK 35(21Q11.2) MUTATED DEL PEAK 35(21Q11.2) WILD-TYPE
  CLUS_1                            6                             24
  CLUS_2                            4                             24
  CLUS_3                            6                             36
  CLUS_4                            4                             17
  CLUS_5                            1                             15
  CLUS_6                            9                             19
  CLUS_7                            1                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(21Q11.2) MUTATED       11      8      4      7
  DEL PEAK 35(21Q11.2) WILD-TYPE     28     37     20     51
D56V3, multiclass
        clus
vv       DEL PEAK 35(21Q11.2) MUTATED DEL PEAK 35(21Q11.2) WILD-TYPE
  CLUS_1                           11                             28
  CLUS_2                            8                             37
  CLUS_3                            4                             20
  CLUS_4                            7                             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(21Q11.2) MUTATED        7      6     10      4      3
  DEL PEAK 35(21Q11.2) WILD-TYPE     38     26     23     33     16
D56V4, multiclass
        clus
vv       DEL PEAK 35(21Q11.2) MUTATED DEL PEAK 35(21Q11.2) WILD-TYPE
  CLUS_1                            7                             38
  CLUS_2                            6                             26
  CLUS_3                           10                             23
  CLUS_4                            4                             33
  CLUS_5                            3                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(21Q11.2) MUTATED       14      8      9
  DEL PEAK 35(21Q11.2) WILD-TYPE     59     63     14
D56V5, multiclass
        clus
vv       DEL PEAK 35(21Q11.2) MUTATED DEL PEAK 35(21Q11.2) WILD-TYPE
  CLUS_1                           14                             59
  CLUS_2                            8                             63
  CLUS_3                            9                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(21Q11.2) MUTATED        9      2      9      3      8
  DEL PEAK 35(21Q11.2) WILD-TYPE     43     12     20      9     52
D56V6, multiclass
        clus
vv       DEL PEAK 35(21Q11.2) MUTATED DEL PEAK 35(21Q11.2) WILD-TYPE
  CLUS_1                            9                             43
  CLUS_2                            2                             12
  CLUS_3                            9                             20
  CLUS_4                            3                              9
  CLUS_5                            8                             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(21Q11.2) MUTATED       12     10      9
  DEL PEAK 35(21Q11.2) WILD-TYPE     57     61     18
D56V7, multiclass
        clus
vv       DEL PEAK 35(21Q11.2) MUTATED DEL PEAK 35(21Q11.2) WILD-TYPE
  CLUS_1                           12                             57
  CLUS_2                           10                             61
  CLUS_3                            9                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(21Q11.2) MUTATED       11     10     10
  DEL PEAK 35(21Q11.2) WILD-TYPE     51     62     23
D56V8, multiclass
        clus
vv       DEL PEAK 35(21Q11.2) MUTATED DEL PEAK 35(21Q11.2) WILD-TYPE
  CLUS_1                           11                             51
  CLUS_2                           10                             62
  CLUS_3                           10                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK 36(21Q22.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(21Q22.3) MUTATED       16     19      9
  DEL PEAK 36(21Q22.3) WILD-TYPE     30     47     48
D57V1, multiclass
        clus
vv       DEL PEAK 36(21Q22.3) MUTATED DEL PEAK 36(21Q22.3) WILD-TYPE
  CLUS_1                           16                             30
  CLUS_2                           19                             47
  CLUS_3                            9                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(21Q22.3) MUTATED       15      4     11      3      2      8
  DEL PEAK 36(21Q22.3) WILD-TYPE     15     24     31     18     14     20
                                vv
clus                             CLUS_7
  DEL PEAK 36(21Q22.3) MUTATED        1
  DEL PEAK 36(21Q22.3) WILD-TYPE      3
D57V2, multiclass
        clus
vv       DEL PEAK 36(21Q22.3) MUTATED DEL PEAK 36(21Q22.3) WILD-TYPE
  CLUS_1                           15                             15
  CLUS_2                            4                             24
  CLUS_3                           11                             31
  CLUS_4                            3                             18
  CLUS_5                            2                             14
  CLUS_6                            8                             20
  CLUS_7                            1                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(21Q22.3) MUTATED       12     14      4     13
  DEL PEAK 36(21Q22.3) WILD-TYPE     27     31     20     45
D57V3, multiclass
        clus
vv       DEL PEAK 36(21Q22.3) MUTATED DEL PEAK 36(21Q22.3) WILD-TYPE
  CLUS_1                           12                             27
  CLUS_2                           14                             31
  CLUS_3                            4                             20
  CLUS_4                           13                             45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(21Q22.3) MUTATED       13      6     11     10      3
  DEL PEAK 36(21Q22.3) WILD-TYPE     32     26     22     27     16
D57V4, multiclass
        clus
vv       DEL PEAK 36(21Q22.3) MUTATED DEL PEAK 36(21Q22.3) WILD-TYPE
  CLUS_1                           13                             32
  CLUS_2                            6                             26
  CLUS_3                           11                             22
  CLUS_4                           10                             27
  CLUS_5                            3                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(21Q22.3) MUTATED       20     15      9
  DEL PEAK 36(21Q22.3) WILD-TYPE     53     56     14
D57V5, multiclass
        clus
vv       DEL PEAK 36(21Q22.3) MUTATED DEL PEAK 36(21Q22.3) WILD-TYPE
  CLUS_1                           20                             53
  CLUS_2                           15                             56
  CLUS_3                            9                             14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(21Q22.3) MUTATED       18      4      7      2     13
  DEL PEAK 36(21Q22.3) WILD-TYPE     34     10     22     10     47
D57V6, multiclass
        clus
vv       DEL PEAK 36(21Q22.3) MUTATED DEL PEAK 36(21Q22.3) WILD-TYPE
  CLUS_1                           18                             34
  CLUS_2                            4                             10
  CLUS_3                            7                             22
  CLUS_4                            2                             10
  CLUS_5                           13                             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(21Q22.3) MUTATED       20     15      9
  DEL PEAK 36(21Q22.3) WILD-TYPE     49     56     18
D57V7, multiclass
        clus
vv       DEL PEAK 36(21Q22.3) MUTATED DEL PEAK 36(21Q22.3) WILD-TYPE
  CLUS_1                           20                             49
  CLUS_2                           15                             56
  CLUS_3                            9                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(21Q22.3) MUTATED       17     17     10
  DEL PEAK 36(21Q22.3) WILD-TYPE     45     55     23
D57V8, multiclass
        clus
vv       DEL PEAK 36(21Q22.3) MUTATED DEL PEAK 36(21Q22.3) WILD-TYPE
  CLUS_1                           17                             45
  CLUS_2                           17                             55
  CLUS_3                           10                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK 37(22Q13.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(22Q13.31) MUTATED       15     32      7
  DEL PEAK 37(22Q13.31) WILD-TYPE     31     34     50
D58V1, multiclass
        clus
vv       DEL PEAK 37(22Q13.31) MUTATED DEL PEAK 37(22Q13.31) WILD-TYPE
  CLUS_1                            15                              31
  CLUS_2                            32                              34
  CLUS_3                             7                              50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(22Q13.31) MUTATED       12      3     11      7      5     13
  DEL PEAK 37(22Q13.31) WILD-TYPE     18     25     31     14     11     15
                                 vv
clus                              CLUS_7
  DEL PEAK 37(22Q13.31) MUTATED        3
  DEL PEAK 37(22Q13.31) WILD-TYPE      1
D58V2, multiclass
        clus
vv       DEL PEAK 37(22Q13.31) MUTATED DEL PEAK 37(22Q13.31) WILD-TYPE
  CLUS_1                            12                              18
  CLUS_2                             3                              25
  CLUS_3                            11                              31
  CLUS_4                             7                              14
  CLUS_5                             5                              11
  CLUS_6                            13                              15
  CLUS_7                             3                               1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(22Q13.31) MUTATED       11     14      9     18
  DEL PEAK 37(22Q13.31) WILD-TYPE     28     31     15     40
D58V3, multiclass
        clus
vv       DEL PEAK 37(22Q13.31) MUTATED DEL PEAK 37(22Q13.31) WILD-TYPE
  CLUS_1                            11                              28
  CLUS_2                            14                              31
  CLUS_3                             9                              15
  CLUS_4                            18                              40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(22Q13.31) MUTATED       14      9     10      8     11
  DEL PEAK 37(22Q13.31) WILD-TYPE     31     23     23     29      8
D58V4, multiclass
        clus
vv       DEL PEAK 37(22Q13.31) MUTATED DEL PEAK 37(22Q13.31) WILD-TYPE
  CLUS_1                            14                              31
  CLUS_2                             9                              23
  CLUS_3                            10                              23
  CLUS_4                             8                              29
  CLUS_5                            11                               8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(22Q13.31) MUTATED       25     19      9
  DEL PEAK 37(22Q13.31) WILD-TYPE     48     52     14
D58V5, multiclass
        clus
vv       DEL PEAK 37(22Q13.31) MUTATED DEL PEAK 37(22Q13.31) WILD-TYPE
  CLUS_1                            25                              48
  CLUS_2                            19                              52
  CLUS_3                             9                              14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(22Q13.31) MUTATED       20      2      8      5     18
  DEL PEAK 37(22Q13.31) WILD-TYPE     32     12     21      7     42
D58V6, multiclass
        clus
vv       DEL PEAK 37(22Q13.31) MUTATED DEL PEAK 37(22Q13.31) WILD-TYPE
  CLUS_1                            20                              32
  CLUS_2                             2                              12
  CLUS_3                             8                              21
  CLUS_4                             5                               7
  CLUS_5                            18                              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(22Q13.31) MUTATED       24     20      9
  DEL PEAK 37(22Q13.31) WILD-TYPE     45     51     18
D58V7, multiclass
        clus
vv       DEL PEAK 37(22Q13.31) MUTATED DEL PEAK 37(22Q13.31) WILD-TYPE
  CLUS_1                            24                              45
  CLUS_2                            20                              51
  CLUS_3                             9                              18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(22Q13.31) MUTATED       25     19      9
  DEL PEAK 37(22Q13.31) WILD-TYPE     37     53     24
D58V8, multiclass
        clus
vv       DEL PEAK 37(22Q13.31) MUTATED DEL PEAK 37(22Q13.31) WILD-TYPE
  CLUS_1                            25                              37
  CLUS_2                            19                              53
  CLUS_3                             9                              24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 38(XP22.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(XP22.33) MUTATED        8     28     18
  DEL PEAK 38(XP22.33) WILD-TYPE     38     38     39
D59V1, multiclass
        clus
vv       DEL PEAK 38(XP22.33) MUTATED DEL PEAK 38(XP22.33) WILD-TYPE
  CLUS_1                            8                             38
  CLUS_2                           28                             38
  CLUS_3                           18                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(XP22.33) MUTATED        7      1     20      8      5     12
  DEL PEAK 38(XP22.33) WILD-TYPE     23     27     22     13     11     16
                                vv
clus                             CLUS_7
  DEL PEAK 38(XP22.33) MUTATED        1
  DEL PEAK 38(XP22.33) WILD-TYPE      3
D59V2, multiclass
        clus
vv       DEL PEAK 38(XP22.33) MUTATED DEL PEAK 38(XP22.33) WILD-TYPE
  CLUS_1                            7                             23
  CLUS_2                            1                             27
  CLUS_3                           20                             22
  CLUS_4                            8                             13
  CLUS_5                            5                             11
  CLUS_6                           12                             16
  CLUS_7                            1                              3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(XP22.33) MUTATED       14      6      8     25
  DEL PEAK 38(XP22.33) WILD-TYPE     25     39     16     33
D59V3, multiclass
        clus
vv       DEL PEAK 38(XP22.33) MUTATED DEL PEAK 38(XP22.33) WILD-TYPE
  CLUS_1                           14                             25
  CLUS_2                            6                             39
  CLUS_3                            8                             16
  CLUS_4                           25                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(XP22.33) MUTATED        9     10     10     16      8
  DEL PEAK 38(XP22.33) WILD-TYPE     36     22     23     21     11
D59V4, multiclass
        clus
vv       DEL PEAK 38(XP22.33) MUTATED DEL PEAK 38(XP22.33) WILD-TYPE
  CLUS_1                            9                             36
  CLUS_2                           10                             22
  CLUS_3                           10                             23
  CLUS_4                           16                             21
  CLUS_5                            8                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(XP22.33) MUTATED       18     29      7
  DEL PEAK 38(XP22.33) WILD-TYPE     55     42     16
D59V5, multiclass
        clus
vv       DEL PEAK 38(XP22.33) MUTATED DEL PEAK 38(XP22.33) WILD-TYPE
  CLUS_1                           18                             55
  CLUS_2                           29                             42
  CLUS_3                            7                             16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(XP22.33) MUTATED       12      3      8      5     26
  DEL PEAK 38(XP22.33) WILD-TYPE     40     11     21      7     34
D59V6, multiclass
        clus
vv       DEL PEAK 38(XP22.33) MUTATED DEL PEAK 38(XP22.33) WILD-TYPE
  CLUS_1                           12                             40
  CLUS_2                            3                             11
  CLUS_3                            8                             21
  CLUS_4                            5                              7
  CLUS_5                           26                             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(XP22.33) MUTATED       17     28      9
  DEL PEAK 38(XP22.33) WILD-TYPE     52     43     18
D59V7, multiclass
        clus
vv       DEL PEAK 38(XP22.33) MUTATED DEL PEAK 38(XP22.33) WILD-TYPE
  CLUS_1                           17                             52
  CLUS_2                           28                             43
  CLUS_3                            9                             18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(XP22.33) MUTATED       15     29     10
  DEL PEAK 38(XP22.33) WILD-TYPE     47     43     23
D59V8, multiclass
        clus
vv       DEL PEAK 38(XP22.33) MUTATED DEL PEAK 38(XP22.33) WILD-TYPE
  CLUS_1                           15                             47
  CLUS_2                           29                             43
  CLUS_3                           10                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 39(XQ21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(XQ21.1) MUTATED       16     39     25
  DEL PEAK 39(XQ21.1) WILD-TYPE     30     27     32
D60V1, multiclass
        clus
vv       DEL PEAK 39(XQ21.1) MUTATED DEL PEAK 39(XQ21.1) WILD-TYPE
  CLUS_1                          16                            30
  CLUS_2                          39                            27
  CLUS_3                          25                            32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(XQ21.1) MUTATED       16      5     30      8      7     13
  DEL PEAK 39(XQ21.1) WILD-TYPE     14     23     12     13      9     15
                               vv
clus                            CLUS_7
  DEL PEAK 39(XQ21.1) MUTATED        1
  DEL PEAK 39(XQ21.1) WILD-TYPE      3
D60V2, multiclass
        clus
vv       DEL PEAK 39(XQ21.1) MUTATED DEL PEAK 39(XQ21.1) WILD-TYPE
  CLUS_1                          16                            14
  CLUS_2                           5                            23
  CLUS_3                          30                            12
  CLUS_4                           8                            13
  CLUS_5                           7                             9
  CLUS_6                          13                            15
  CLUS_7                           1                             3
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(XQ21.1) MUTATED       20     15      7     37
  DEL PEAK 39(XQ21.1) WILD-TYPE     19     30     17     21
D60V3, multiclass
        clus
vv       DEL PEAK 39(XQ21.1) MUTATED DEL PEAK 39(XQ21.1) WILD-TYPE
  CLUS_1                          20                            19
  CLUS_2                          15                            30
  CLUS_3                           7                            17
  CLUS_4                          37                            21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(XQ21.1) MUTATED       15     12     15     27     10
  DEL PEAK 39(XQ21.1) WILD-TYPE     30     20     18     10      9
D60V4, multiclass
        clus
vv       DEL PEAK 39(XQ21.1) MUTATED DEL PEAK 39(XQ21.1) WILD-TYPE
  CLUS_1                          15                            30
  CLUS_2                          12                            20
  CLUS_3                          15                            18
  CLUS_4                          27                            10
  CLUS_5                          10                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(XQ21.1) MUTATED       27     43      9
  DEL PEAK 39(XQ21.1) WILD-TYPE     46     28     14
D60V5, multiclass
        clus
vv       DEL PEAK 39(XQ21.1) MUTATED DEL PEAK 39(XQ21.1) WILD-TYPE
  CLUS_1                          27                            46
  CLUS_2                          43                            28
  CLUS_3                           9                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(XQ21.1) MUTATED       21      5     12      2     39
  DEL PEAK 39(XQ21.1) WILD-TYPE     31      9     17     10     21
D60V6, multiclass
        clus
vv       DEL PEAK 39(XQ21.1) MUTATED DEL PEAK 39(XQ21.1) WILD-TYPE
  CLUS_1                          21                            31
  CLUS_2                           5                             9
  CLUS_3                          12                            17
  CLUS_4                           2                            10
  CLUS_5                          39                            21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(XQ21.1) MUTATED       24     44     11
  DEL PEAK 39(XQ21.1) WILD-TYPE     45     27     16
D60V7, multiclass
        clus
vv       DEL PEAK 39(XQ21.1) MUTATED DEL PEAK 39(XQ21.1) WILD-TYPE
  CLUS_1                          24                            45
  CLUS_2                          44                            27
  CLUS_3                          11                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(XQ21.1) MUTATED       22     43     14
  DEL PEAK 39(XQ21.1) WILD-TYPE     40     29     19
D60V8, multiclass
        clus
vv       DEL PEAK 39(XQ21.1) MUTATED DEL PEAK 39(XQ21.1) WILD-TYPE
  CLUS_1                          22                            40
  CLUS_2                          43                            29
  CLUS_3                          14                            19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 40(XQ27.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(XQ27.1) MUTATED       13     46     23
  DEL PEAK 40(XQ27.1) WILD-TYPE     33     20     34
D61V1, multiclass
        clus
vv       DEL PEAK 40(XQ27.1) MUTATED DEL PEAK 40(XQ27.1) WILD-TYPE
  CLUS_1                          13                            33
  CLUS_2                          46                            20
  CLUS_3                          23                            34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(XQ27.1) MUTATED       16      7     30      6      7     13
  DEL PEAK 40(XQ27.1) WILD-TYPE     14     21     12     15      9     15
                               vv
clus                            CLUS_7
  DEL PEAK 40(XQ27.1) MUTATED        3
  DEL PEAK 40(XQ27.1) WILD-TYPE      1
D61V2, multiclass
        clus
vv       DEL PEAK 40(XQ27.1) MUTATED DEL PEAK 40(XQ27.1) WILD-TYPE
  CLUS_1                          16                            14
  CLUS_2                           7                            21
  CLUS_3                          30                            12
  CLUS_4                           6                            15
  CLUS_5                           7                             9
  CLUS_6                          13                            15
  CLUS_7                           3                             1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(XQ27.1) MUTATED       15     20      6     40
  DEL PEAK 40(XQ27.1) WILD-TYPE     24     25     18     18
D61V3, multiclass
        clus
vv       DEL PEAK 40(XQ27.1) MUTATED DEL PEAK 40(XQ27.1) WILD-TYPE
  CLUS_1                          15                            24
  CLUS_2                          20                            25
  CLUS_3                           6                            18
  CLUS_4                          40                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(XQ27.1) MUTATED       18      9     15     26     13
  DEL PEAK 40(XQ27.1) WILD-TYPE     27     23     18     11      6
D61V4, multiclass
        clus
vv       DEL PEAK 40(XQ27.1) MUTATED DEL PEAK 40(XQ27.1) WILD-TYPE
  CLUS_1                          18                            27
  CLUS_2                           9                            23
  CLUS_3                          15                            18
  CLUS_4                          26                            11
  CLUS_5                          13                             6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(XQ27.1) MUTATED       26     45      9
  DEL PEAK 40(XQ27.1) WILD-TYPE     47     26     14
D61V5, multiclass
        clus
vv       DEL PEAK 40(XQ27.1) MUTATED DEL PEAK 40(XQ27.1) WILD-TYPE
  CLUS_1                          26                            47
  CLUS_2                          45                            26
  CLUS_3                           9                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(XQ27.1) MUTATED       22      6     10      2     40
  DEL PEAK 40(XQ27.1) WILD-TYPE     30      8     19     10     20
D61V6, multiclass
        clus
vv       DEL PEAK 40(XQ27.1) MUTATED DEL PEAK 40(XQ27.1) WILD-TYPE
  CLUS_1                          22                            30
  CLUS_2                           6                             8
  CLUS_3                          10                            19
  CLUS_4                           2                            10
  CLUS_5                          40                            20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(XQ27.1) MUTATED       24     45     11
  DEL PEAK 40(XQ27.1) WILD-TYPE     45     26     16
D61V7, multiclass
        clus
vv       DEL PEAK 40(XQ27.1) MUTATED DEL PEAK 40(XQ27.1) WILD-TYPE
  CLUS_1                          24                            45
  CLUS_2                          45                            26
  CLUS_3                          11                            16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(XQ27.1) MUTATED       23     46     11
  DEL PEAK 40(XQ27.1) WILD-TYPE     39     26     22
D61V8, multiclass
        clus
vv       DEL PEAK 40(XQ27.1) MUTATED DEL PEAK 40(XQ27.1) WILD-TYPE
  CLUS_1                          23                            39
  CLUS_2                          46                            26
  CLUS_3                          11                            22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
