[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oTSKCM-TM"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/SKCM-TM/10668109/SKCM-TM.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/SKCM-TM/10013811/transformed.cor.cli.txt"

nPatients in clinical file=361, in cluster file=299, common to both=299
[1]  54 299
[1] "AMP PEAK  1(1P12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE 
                         96                         203 
  AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE 
                         96                         203 
[1] "AMP PEAK  2(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          158                           141 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          158                           141 
[1] "AMP PEAK  3(1Q44) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                        162                         137 
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                        162                         137 
[1] "AMP PEAK  4(3P13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE 
                         78                         221 
  AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE 
                         78                         221 
[1] "AMP PEAK  5(4Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                         53                         246 
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                         53                         246 
[1] "AMP PEAK  6(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE 
                            91                            208 
  AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE 
                            91                            208 
[1] "AMP PEAK  7(5Q35.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE 
                           48                           251 
  AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE 
                           48                           251 
[1] "AMP PEAK  8(6P24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(6P24.3) MUTATED AMP PEAK  8(6P24.3) WILD-TYPE 
                          169                           130 
  AMP PEAK  8(6P24.3) MUTATED AMP PEAK  8(6P24.3) WILD-TYPE 
                          169                           130 
[1] "AMP PEAK  9(6Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE 
                         64                         235 
  AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE 
                         64                         235 
[1] "AMP PEAK 10(7P22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE 
                          164                           135 
  AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE 
                          164                           135 
[1] "AMP PEAK 11(7Q34) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE 
                        177                         122 
  AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE 
                        177                         122 
[1] "AMP PEAK 12(8Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE 
                           137                            162 
  AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE 
                           137                            162 
[1] "AMP PEAK 13(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE 
                           158                            141 
  AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE 
                           158                            141 
[1] "AMP PEAK 14(11Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE 
                            58                            241 
  AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE 
                            58                            241 
[1] "AMP PEAK 15(11Q13.4) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(11Q13.4) MUTATED AMP PEAK 15(11Q13.4) WILD-TYPE 
                            54                            245 
  AMP PEAK 15(11Q13.4) MUTATED AMP PEAK 15(11Q13.4) WILD-TYPE 
                            54                            245 
[1] "AMP PEAK 16(12Q14.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(12Q14.1) MUTATED AMP PEAK 16(12Q14.1) WILD-TYPE 
                            51                            248 
  AMP PEAK 16(12Q14.1) MUTATED AMP PEAK 16(12Q14.1) WILD-TYPE 
                            51                            248 
[1] "AMP PEAK 17(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE 
                          50                          249 
  AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE 
                          50                          249 
[1] "AMP PEAK 18(13Q12.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(13Q12.3) MUTATED AMP PEAK 18(13Q12.3) WILD-TYPE 
                            85                            214 
  AMP PEAK 18(13Q12.3) MUTATED AMP PEAK 18(13Q12.3) WILD-TYPE 
                            85                            214 
[1] "AMP PEAK 19(15Q26.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(15Q26.2) MUTATED AMP PEAK 19(15Q26.2) WILD-TYPE 
                            99                            200 
  AMP PEAK 19(15Q26.2) MUTATED AMP PEAK 19(15Q26.2) WILD-TYPE 
                            99                            200 
[1] "AMP PEAK 20(17Q25.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(17Q25.3) MUTATED AMP PEAK 20(17Q25.3) WILD-TYPE 
                           100                            199 
  AMP PEAK 20(17Q25.3) MUTATED AMP PEAK 20(17Q25.3) WILD-TYPE 
                           100                            199 
[1] "AMP PEAK 21(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE 
                            56                            243 
  AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE 
                            56                            243 
[1] "AMP PEAK 22(20Q13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE 
                            153                             146 
  AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE 
                            153                             146 
[1] "AMP PEAK 23(22Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(22Q13.2) MUTATED AMP PEAK 23(22Q13.2) WILD-TYPE 
                           127                            172 
  AMP PEAK 23(22Q13.2) MUTATED AMP PEAK 23(22Q13.2) WILD-TYPE 
                           127                            172 
[1] "DEL PEAK  1(1P36.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            70                            229 
  DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE 
                            70                            229 
[1] "DEL PEAK  2(1P22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                           76                           223 
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                           76                           223 
[1] "DEL PEAK  3(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                           74                           225 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                           74                           225 
[1] "DEL PEAK  4(3P24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(3P24.3) MUTATED DEL PEAK  4(3P24.3) WILD-TYPE 
                           60                           239 
  DEL PEAK  4(3P24.3) MUTATED DEL PEAK  4(3P24.3) WILD-TYPE 
                           60                           239 
[1] "DEL PEAK  5(3Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3Q23) MUTATED DEL PEAK  5(3Q23) WILD-TYPE 
                         48                         251 
  DEL PEAK  5(3Q23) MUTATED DEL PEAK  5(3Q23) WILD-TYPE 
                         48                         251 
[1] "DEL PEAK  6(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE 
                           85                           214 
  DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE 
                           85                           214 
[1] "DEL PEAK  7(5P15.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(5P15.31) MUTATED DEL PEAK  7(5P15.31) WILD-TYPE 
                            61                            238 
  DEL PEAK  7(5P15.31) MUTATED DEL PEAK  7(5P15.31) WILD-TYPE 
                            61                            238 
[1] "DEL PEAK  8(5Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE 
                           80                           219 
  DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE 
                           80                           219 
[1] "DEL PEAK  9(5Q31.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(5Q31.3) MUTATED DEL PEAK  9(5Q31.3) WILD-TYPE 
                          111                           188 
  DEL PEAK  9(5Q31.3) MUTATED DEL PEAK  9(5Q31.3) WILD-TYPE 
                          111                           188 
[1] "DEL PEAK 10(6Q22.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE 
                           179                            120 
  DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE 
                           179                            120 
[1] "DEL PEAK 11(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                        184                         115 
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                        184                         115 
[1] "DEL PEAK 12(8P23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(8P23.3) MUTATED DEL PEAK 12(8P23.3) WILD-TYPE 
                           69                           230 
  DEL PEAK 12(8P23.3) MUTATED DEL PEAK 12(8P23.3) WILD-TYPE 
                           69                           230 
[1] "DEL PEAK 13(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE 
                        206                          93 
  DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE 
                        206                          93 
[1] "DEL PEAK 14(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE 
                          229                            70 
  DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE 
                          229                            70 
[1] "DEL PEAK 15(10P15.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(10P15.3) MUTATED DEL PEAK 15(10P15.3) WILD-TYPE 
                           163                            136 
  DEL PEAK 15(10P15.3) MUTATED DEL PEAK 15(10P15.3) WILD-TYPE 
                           163                            136 
[1] "DEL PEAK 16(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE 
                            188                             111 
  DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE 
                            188                             111 
[1] "DEL PEAK 17(10Q26.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(10Q26.3) MUTATED DEL PEAK 17(10Q26.3) WILD-TYPE 
                           193                            106 
  DEL PEAK 17(10Q26.3) MUTATED DEL PEAK 17(10Q26.3) WILD-TYPE 
                           193                            106 
[1] "DEL PEAK 18(11P11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(11P11.2) MUTATED DEL PEAK 18(11P11.2) WILD-TYPE 
                            96                            203 
  DEL PEAK 18(11P11.2) MUTATED DEL PEAK 18(11P11.2) WILD-TYPE 
                            96                            203 
[1] "DEL PEAK 19(11Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE 
                           161                            138 
  DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE 
                           161                            138 
[1] "DEL PEAK 20(12Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(12Q23.3) MUTATED DEL PEAK 20(12Q23.3) WILD-TYPE 
                            73                            226 
  DEL PEAK 20(12Q23.3) MUTATED DEL PEAK 20(12Q23.3) WILD-TYPE 
                            73                            226 
[1] "DEL PEAK 21(13Q12.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(13Q12.11) MUTATED DEL PEAK 21(13Q12.11) WILD-TYPE 
                             68                             231 
  DEL PEAK 21(13Q12.11) MUTATED DEL PEAK 21(13Q12.11) WILD-TYPE 
                             68                             231 
[1] "DEL PEAK 22(13Q34) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(13Q34) MUTATED DEL PEAK 22(13Q34) WILD-TYPE 
                          68                          231 
  DEL PEAK 22(13Q34) MUTATED DEL PEAK 22(13Q34) WILD-TYPE 
                          68                          231 
[1] "DEL PEAK 23(14Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(14Q23.3) MUTATED DEL PEAK 23(14Q23.3) WILD-TYPE 
                           102                            197 
  DEL PEAK 23(14Q23.3) MUTATED DEL PEAK 23(14Q23.3) WILD-TYPE 
                           102                            197 
[1] "DEL PEAK 24(14Q32.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(14Q32.2) MUTATED DEL PEAK 24(14Q32.2) WILD-TYPE 
                           100                            199 
  DEL PEAK 24(14Q32.2) MUTATED DEL PEAK 24(14Q32.2) WILD-TYPE 
                           100                            199 
[1] "DEL PEAK 25(15Q13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(15Q13.3) MUTATED DEL PEAK 25(15Q13.3) WILD-TYPE 
                            73                            226 
  DEL PEAK 25(15Q13.3) MUTATED DEL PEAK 25(15Q13.3) WILD-TYPE 
                            73                            226 
[1] "DEL PEAK 26(15Q14) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(15Q14) MUTATED DEL PEAK 26(15Q14) WILD-TYPE 
                          73                          226 
  DEL PEAK 26(15Q14) MUTATED DEL PEAK 26(15Q14) WILD-TYPE 
                          73                          226 
[1] "DEL PEAK 27(15Q15.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(15Q15.2) MUTATED DEL PEAK 27(15Q15.2) WILD-TYPE 
                            78                            221 
  DEL PEAK 27(15Q15.2) MUTATED DEL PEAK 27(15Q15.2) WILD-TYPE 
                            78                            221 
[1] "DEL PEAK 28(16P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE 
                            56                            243 
  DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE 
                            56                            243 
[1] "DEL PEAK 29(16Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(16Q12.1) MUTATED DEL PEAK 29(16Q12.1) WILD-TYPE 
                            97                            202 
  DEL PEAK 29(16Q12.1) MUTATED DEL PEAK 29(16Q12.1) WILD-TYPE 
                            97                            202 
[1] "DEL PEAK 30(16Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE 
                           107                            192 
  DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE 
                           107                            192 
[1] "DEL PEAK 31(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE 
                            83                            216 
  DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE 
                            83                            216 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 299 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 299 columns, 0 survival variables, and 10 non-survival variables.
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P12) MUTATED       38     17     17     24
  AMP PEAK  1(1P12) WILD-TYPE     47     40     34     82
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        38                          47
  CLUS_2                        17                          40
  CLUS_3                        17                          34
  CLUS_4                        24                          82
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P12) MUTATED       35     34     27
  AMP PEAK  1(1P12) WILD-TYPE     77     77     49
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        35                          77
  CLUS_2                        34                          77
  CLUS_3                        27                          49
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P12) MUTATED       15     18     11     11
  AMP PEAK  1(1P12) WILD-TYPE     32     40     15     27
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        15                          32
  CLUS_2                        18                          40
  CLUS_3                        11                          15
  CLUS_4                        11                          27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P12) MUTATED       10     18     10     17
  AMP PEAK  1(1P12) WILD-TYPE     17     40     25     32
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        10                          17
  CLUS_2                        18                          40
  CLUS_3                        10                          25
  CLUS_4                        17                          32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P12) MUTATED       33     21     41
  AMP PEAK  1(1P12) WILD-TYPE     66     66     71
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        33                          66
  CLUS_2                        21                          66
  CLUS_3                        41                          71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P12) MUTATED       24     53     18
  AMP PEAK  1(1P12) WILD-TYPE     46    125     32
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        24                          46
  CLUS_2                        53                         125
  CLUS_3                        18                          32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P12) MUTATED       19     34     23     14      0
  AMP PEAK  1(1P12) WILD-TYPE     46     57     54     28     12
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        19                          46
  CLUS_2                        34                          57
  CLUS_3                        23                          54
  CLUS_4                        14                          28
  CLUS_5                         0                          12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P12) MUTATED       27     23     12     28
  AMP PEAK  1(1P12) WILD-TYPE     49     57     24     67
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        27                          49
  CLUS_2                        23                          57
  CLUS_3                        12                          24
  CLUS_4                        28                          67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P12) MUTATED       29     35     26
  AMP PEAK  1(1P12) WILD-TYPE     72     63     62
D1V9, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        29                          72
  CLUS_2                        35                          63
  CLUS_3                        26                          62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P12) MUTATED       42     26     13      9
  AMP PEAK  1(1P12) WILD-TYPE     76     63     42     16
D1V10, multiclass
        clus
vv       AMP PEAK  1(1P12) MUTATED AMP PEAK  1(1P12) WILD-TYPE
  CLUS_1                        42                          76
  CLUS_2                        26                          63
  CLUS_3                        13                          42
  CLUS_4                         9                          16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       76     13     37     32
  AMP PEAK  2(1Q21.3) WILD-TYPE      9     44     14     74
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          76                             9
  CLUS_2                          13                            44
  CLUS_3                          37                            14
  CLUS_4                          32                            74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       57     51     50
  AMP PEAK  2(1Q21.3) WILD-TYPE     55     60     26
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          57                            55
  CLUS_2                          51                            60
  CLUS_3                          50                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       25     31     16     15
  AMP PEAK  2(1Q21.3) WILD-TYPE     22     27     10     23
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          25                            22
  CLUS_2                          31                            27
  CLUS_3                          16                            10
  CLUS_4                          15                            23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       14     29     15     29
  AMP PEAK  2(1Q21.3) WILD-TYPE     13     29     20     20
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          14                            13
  CLUS_2                          29                            29
  CLUS_3                          15                            20
  CLUS_4                          29                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       56     34     67
  AMP PEAK  2(1Q21.3) WILD-TYPE     43     53     45
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          56                            43
  CLUS_2                          34                            53
  CLUS_3                          67                            45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       40     85     32
  AMP PEAK  2(1Q21.3) WILD-TYPE     30     93     18
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          40                            30
  CLUS_2                          85                            93
  CLUS_3                          32                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1Q21.3) MUTATED       29     53     38     28      4
  AMP PEAK  2(1Q21.3) WILD-TYPE     36     38     39     14      8
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          29                            36
  CLUS_2                          53                            38
  CLUS_3                          38                            39
  CLUS_4                          28                            14
  CLUS_5                           4                             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       40     34     24     54
  AMP PEAK  2(1Q21.3) WILD-TYPE     36     46     12     41
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          40                            36
  CLUS_2                          34                            46
  CLUS_3                          24                            12
  CLUS_4                          54                            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1Q21.3) MUTATED       52     60     40
  AMP PEAK  2(1Q21.3) WILD-TYPE     49     38     48
D2V9, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          52                            49
  CLUS_2                          60                            38
  CLUS_3                          40                            48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1Q21.3) MUTATED       66     40     29     17
  AMP PEAK  2(1Q21.3) WILD-TYPE     52     49     26      8
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          66                            52
  CLUS_2                          40                            49
  CLUS_3                          29                            26
  CLUS_4                          17                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q44) MUTATED       77     14     37     34
  AMP PEAK  3(1Q44) WILD-TYPE      8     43     14     72
D3V1, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        77                           8
  CLUS_2                        14                          43
  CLUS_3                        37                          14
  CLUS_4                        34                          72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED       61     49     52
  AMP PEAK  3(1Q44) WILD-TYPE     51     62     24
D3V2, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        61                          51
  CLUS_2                        49                          62
  CLUS_3                        52                          24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q44) MUTATED       25     31     19     17
  AMP PEAK  3(1Q44) WILD-TYPE     22     27      7     21
D3V3, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        25                          22
  CLUS_2                        31                          27
  CLUS_3                        19                           7
  CLUS_4                        17                          21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q44) MUTATED       14     30     15     33
  AMP PEAK  3(1Q44) WILD-TYPE     13     28     20     16
D3V4, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        14                          13
  CLUS_2                        30                          28
  CLUS_3                        15                          20
  CLUS_4                        33                          16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED       56     37     68
  AMP PEAK  3(1Q44) WILD-TYPE     43     50     44
D3V5, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        56                          43
  CLUS_2                        37                          50
  CLUS_3                        68                          44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED       45     84     32
  AMP PEAK  3(1Q44) WILD-TYPE     25     94     18
D3V6, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        45                          25
  CLUS_2                        84                          94
  CLUS_3                        32                          18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1Q44) MUTATED       26     55     39     31      6
  AMP PEAK  3(1Q44) WILD-TYPE     39     36     38     11      6
D3V7, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        26                          39
  CLUS_2                        55                          36
  CLUS_3                        39                          38
  CLUS_4                        31                          11
  CLUS_5                         6                           6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q44) MUTATED       40     34     27     56
  AMP PEAK  3(1Q44) WILD-TYPE     36     46      9     39
D3V8, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        40                          36
  CLUS_2                        34                          46
  CLUS_3                        27                           9
  CLUS_4                        56                          39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1Q44) MUTATED       56     61     40
  AMP PEAK  3(1Q44) WILD-TYPE     45     37     48
D3V9, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        56                          45
  CLUS_2                        61                          37
  CLUS_3                        40                          48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1Q44) MUTATED       66     39     32     20
  AMP PEAK  3(1Q44) WILD-TYPE     52     50     23      5
D3V10, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        66                          52
  CLUS_2                        39                          50
  CLUS_3                        32                          23
  CLUS_4                        20                           5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(3P13) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3P13) MUTATED       19     14     20     25
  AMP PEAK  4(3P13) WILD-TYPE     66     43     31     81
D4V1, multiclass
        clus
vv       AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE
  CLUS_1                        19                          66
  CLUS_2                        14                          43
  CLUS_3                        20                          31
  CLUS_4                        25                          81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3P13) MUTATED       25     36     17
  AMP PEAK  4(3P13) WILD-TYPE     87     75     59
D4V2, multiclass
        clus
vv       AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE
  CLUS_1                        25                          87
  CLUS_2                        36                          75
  CLUS_3                        17                          59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3P13) MUTATED       20     11      7     12
  AMP PEAK  4(3P13) WILD-TYPE     27     47     19     26
D4V3, multiclass
        clus
vv       AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE
  CLUS_1                        20                          27
  CLUS_2                        11                          47
  CLUS_3                         7                          19
  CLUS_4                        12                          26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3P13) MUTATED       11     11     13     15
  AMP PEAK  4(3P13) WILD-TYPE     16     47     22     34
D4V4, multiclass
        clus
vv       AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE
  CLUS_1                        11                          16
  CLUS_2                        11                          47
  CLUS_3                        13                          22
  CLUS_4                        15                          34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3P13) MUTATED       24     25     29
  AMP PEAK  4(3P13) WILD-TYPE     75     62     83
D4V5, multiclass
        clus
vv       AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE
  CLUS_1                        24                          75
  CLUS_2                        25                          62
  CLUS_3                        29                          83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3P13) MUTATED       17     53      8
  AMP PEAK  4(3P13) WILD-TYPE     53    125     42
D4V6, multiclass
        clus
vv       AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE
  CLUS_1                        17                          53
  CLUS_2                        53                         125
  CLUS_3                         8                          42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(3P13) MUTATED       15     27     19     12      1
  AMP PEAK  4(3P13) WILD-TYPE     50     64     58     30     11
D4V7, multiclass
        clus
vv       AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE
  CLUS_1                        15                          50
  CLUS_2                        27                          64
  CLUS_3                        19                          58
  CLUS_4                        12                          30
  CLUS_5                         1                          11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3P13) MUTATED       15     14      9     36
  AMP PEAK  4(3P13) WILD-TYPE     61     66     27     59
D4V8, multiclass
        clus
vv       AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE
  CLUS_1                        15                          61
  CLUS_2                        14                          66
  CLUS_3                         9                          27
  CLUS_4                        36                          59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(3P13) MUTATED       24     27     23
  AMP PEAK  4(3P13) WILD-TYPE     77     71     65
D4V9, multiclass
        clus
vv       AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE
  CLUS_1                        24                          77
  CLUS_2                        27                          71
  CLUS_3                        23                          65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(3P13) MUTATED       33     19     16      6
  AMP PEAK  4(3P13) WILD-TYPE     85     70     39     19
D4V10, multiclass
        clus
vv       AMP PEAK  4(3P13) MUTATED AMP PEAK  4(3P13) WILD-TYPE
  CLUS_1                        33                          85
  CLUS_2                        19                          70
  CLUS_3                        16                          39
  CLUS_4                         6                          19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(4Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED       24     14      7      8
  AMP PEAK  5(4Q12) WILD-TYPE     61     43     44     98
D5V1, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        24                          61
  CLUS_2                        14                          43
  CLUS_3                         7                          44
  CLUS_4                         8                          98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED       23     14     16
  AMP PEAK  5(4Q12) WILD-TYPE     89     97     60
D5V2, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        23                          89
  CLUS_2                        14                          97
  CLUS_3                        16                          60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED        4     14      7     10
  AMP PEAK  5(4Q12) WILD-TYPE     43     44     19     28
D5V3, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         4                          43
  CLUS_2                        14                          44
  CLUS_3                         7                          19
  CLUS_4                        10                          28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED        3     13      9     10
  AMP PEAK  5(4Q12) WILD-TYPE     24     45     26     39
D5V4, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         3                          24
  CLUS_2                        13                          45
  CLUS_3                         9                          26
  CLUS_4                        10                          39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED       15     13     25
  AMP PEAK  5(4Q12) WILD-TYPE     84     74     87
D5V5, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        15                          84
  CLUS_2                        13                          74
  CLUS_3                        25                          87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED       18     29      6
  AMP PEAK  5(4Q12) WILD-TYPE     52    149     44
D5V6, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        18                          52
  CLUS_2                        29                         149
  CLUS_3                         6                          44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(4Q12) MUTATED        8     26      9      8      2
  AMP PEAK  5(4Q12) WILD-TYPE     57     65     68     34     10
D5V7, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         8                          57
  CLUS_2                        26                          65
  CLUS_3                         9                          68
  CLUS_4                         8                          34
  CLUS_5                         2                          10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED       11      8      4     30
  AMP PEAK  5(4Q12) WILD-TYPE     65     72     32     65
D5V8, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        11                          65
  CLUS_2                         8                          72
  CLUS_3                         4                          32
  CLUS_4                        30                          65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(4Q12) MUTATED       14     28     11
  AMP PEAK  5(4Q12) WILD-TYPE     87     70     77
D5V9, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        14                          87
  CLUS_2                        28                          70
  CLUS_3                        11                          77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(4Q12) MUTATED       29      9     12      3
  AMP PEAK  5(4Q12) WILD-TYPE     89     80     43     22
D5V10, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        29                          89
  CLUS_2                         9                          80
  CLUS_3                        12                          43
  CLUS_4                         3                          22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5P15.33) MUTATED       32     25     18     16
  AMP PEAK  6(5P15.33) WILD-TYPE     53     32     33     90
D6V1, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           32                             53
  CLUS_2                           25                             32
  CLUS_3                           18                             33
  CLUS_4                           16                             90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P15.33) MUTATED       38     27     26
  AMP PEAK  6(5P15.33) WILD-TYPE     74     84     50
D6V2, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           38                             74
  CLUS_2                           27                             84
  CLUS_3                           26                             50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5P15.33) MUTATED       13     15      7     14
  AMP PEAK  6(5P15.33) WILD-TYPE     34     43     19     24
D6V3, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           13                             34
  CLUS_2                           15                             43
  CLUS_3                            7                             19
  CLUS_4                           14                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5P15.33) MUTATED        8     15      9     17
  AMP PEAK  6(5P15.33) WILD-TYPE     19     43     26     32
D6V4, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                            8                             19
  CLUS_2                           15                             43
  CLUS_3                            9                             26
  CLUS_4                           17                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P15.33) MUTATED       32     19     40
  AMP PEAK  6(5P15.33) WILD-TYPE     67     68     72
D6V5, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           32                             67
  CLUS_2                           19                             68
  CLUS_3                           40                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P15.33) MUTATED       27     50     14
  AMP PEAK  6(5P15.33) WILD-TYPE     43    128     36
D6V6, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           27                             43
  CLUS_2                           50                            128
  CLUS_3                           14                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(5P15.33) MUTATED       20     35     11     16      5
  AMP PEAK  6(5P15.33) WILD-TYPE     45     56     66     26      7
D6V7, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           20                             45
  CLUS_2                           35                             56
  CLUS_3                           11                             66
  CLUS_4                           16                             26
  CLUS_5                            5                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5P15.33) MUTATED       21     17     13     36
  AMP PEAK  6(5P15.33) WILD-TYPE     55     63     23     59
D6V8, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           21                             55
  CLUS_2                           17                             63
  CLUS_3                           13                             23
  CLUS_4                           36                             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(5P15.33) MUTATED       35     37     15
  AMP PEAK  6(5P15.33) WILD-TYPE     66     61     73
D6V9, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           35                             66
  CLUS_2                           37                             61
  CLUS_3                           15                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(5P15.33) MUTATED       40     21     16     10
  AMP PEAK  6(5P15.33) WILD-TYPE     78     68     39     15
D6V10, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           40                             78
  CLUS_2                           21                             68
  CLUS_3                           16                             39
  CLUS_4                           10                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(5Q35.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5Q35.3) MUTATED       21     12      7      8
  AMP PEAK  7(5Q35.3) WILD-TYPE     64     45     44     98
D7V1, multiclass
        clus
vv       AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE
  CLUS_1                          21                            64
  CLUS_2                          12                            45
  CLUS_3                           7                            44
  CLUS_4                           8                            98
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5Q35.3) MUTATED       15     11     22
  AMP PEAK  7(5Q35.3) WILD-TYPE     97    100     54
D7V2, multiclass
        clus
vv       AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE
  CLUS_1                          15                            97
  CLUS_2                          11                           100
  CLUS_3                          22                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5Q35.3) MUTATED        3     10      6      9
  AMP PEAK  7(5Q35.3) WILD-TYPE     44     48     20     29
D7V3, multiclass
        clus
vv       AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE
  CLUS_1                           3                            44
  CLUS_2                          10                            48
  CLUS_3                           6                            20
  CLUS_4                           9                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5Q35.3) MUTATED        3      5      7     13
  AMP PEAK  7(5Q35.3) WILD-TYPE     24     53     28     36
D7V4, multiclass
        clus
vv       AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE
  CLUS_1                           3                            24
  CLUS_2                           5                            53
  CLUS_3                           7                            28
  CLUS_4                          13                            36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5Q35.3) MUTATED       18      7     23
  AMP PEAK  7(5Q35.3) WILD-TYPE     81     80     89
D7V5, multiclass
        clus
vv       AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE
  CLUS_1                          18                            81
  CLUS_2                           7                            80
  CLUS_3                          23                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5Q35.3) MUTATED       16     25      7
  AMP PEAK  7(5Q35.3) WILD-TYPE     54    153     43
D7V6, multiclass
        clus
vv       AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE
  CLUS_1                          16                            54
  CLUS_2                          25                           153
  CLUS_3                           7                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(5Q35.3) MUTATED        8     20     10      4      3
  AMP PEAK  7(5Q35.3) WILD-TYPE     57     71     67     38      9
D7V7, multiclass
        clus
vv       AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE
  CLUS_1                           8                            57
  CLUS_2                          20                            71
  CLUS_3                          10                            67
  CLUS_4                           4                            38
  CLUS_5                           3                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5Q35.3) MUTATED       15      9      2     19
  AMP PEAK  7(5Q35.3) WILD-TYPE     61     71     34     76
D7V8, multiclass
        clus
vv       AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE
  CLUS_1                          15                            61
  CLUS_2                           9                            71
  CLUS_3                           2                            34
  CLUS_4                          19                            76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(5Q35.3) MUTATED        9     25     11
  AMP PEAK  7(5Q35.3) WILD-TYPE     92     73     77
D7V9, multiclass
        clus
vv       AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE
  CLUS_1                           9                            92
  CLUS_2                          25                            73
  CLUS_3                          11                            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(5Q35.3) MUTATED       25     11      8      1
  AMP PEAK  7(5Q35.3) WILD-TYPE     93     78     47     24
D7V10, multiclass
        clus
vv       AMP PEAK  7(5Q35.3) MUTATED AMP PEAK  7(5Q35.3) WILD-TYPE
  CLUS_1                          25                            93
  CLUS_2                          11                            78
  CLUS_3                           8                            47
  CLUS_4                           1                            24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(6P24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P24.3) MUTATED       67     45     15     42
  AMP PEAK  8(6P24.3) WILD-TYPE     18     12     36     64
D8V1, multiclass
        clus
vv       AMP PEAK  8(6P24.3) MUTATED AMP PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                          67                            18
  CLUS_2                          45                            12
  CLUS_3                          15                            36
  CLUS_4                          42                            64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P24.3) MUTATED       68     48     53
  AMP PEAK  8(6P24.3) WILD-TYPE     44     63     23
D8V2, multiclass
        clus
vv       AMP PEAK  8(6P24.3) MUTATED AMP PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                          68                            44
  CLUS_2                          48                            63
  CLUS_3                          53                            23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P24.3) MUTATED       25     38     14     18
  AMP PEAK  8(6P24.3) WILD-TYPE     22     20     12     20
D8V3, multiclass
        clus
vv       AMP PEAK  8(6P24.3) MUTATED AMP PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                          25                            22
  CLUS_2                          38                            20
  CLUS_3                          14                            12
  CLUS_4                          18                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P24.3) MUTATED       12     38     13     32
  AMP PEAK  8(6P24.3) WILD-TYPE     15     20     22     17
D8V4, multiclass
        clus
vv       AMP PEAK  8(6P24.3) MUTATED AMP PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                          12                            15
  CLUS_2                          38                            20
  CLUS_3                          13                            22
  CLUS_4                          32                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P24.3) MUTATED       54     43     72
  AMP PEAK  8(6P24.3) WILD-TYPE     45     44     40
D8V5, multiclass
        clus
vv       AMP PEAK  8(6P24.3) MUTATED AMP PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                          54                            45
  CLUS_2                          43                            44
  CLUS_3                          72                            40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P24.3) MUTATED       50     94     25
  AMP PEAK  8(6P24.3) WILD-TYPE     20     84     25
D8V6, multiclass
        clus
vv       AMP PEAK  8(6P24.3) MUTATED AMP PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                          50                            20
  CLUS_2                          94                            84
  CLUS_3                          25                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(6P24.3) MUTATED       34     64     37     24      3
  AMP PEAK  8(6P24.3) WILD-TYPE     31     27     40     18      9
D8V7, multiclass
        clus
vv       AMP PEAK  8(6P24.3) MUTATED AMP PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                          34                            31
  CLUS_2                          64                            27
  CLUS_3                          37                            40
  CLUS_4                          24                            18
  CLUS_5                           3                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P24.3) MUTATED       51     30     19     62
  AMP PEAK  8(6P24.3) WILD-TYPE     25     50     17     33
D8V8, multiclass
        clus
vv       AMP PEAK  8(6P24.3) MUTATED AMP PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                          51                            25
  CLUS_2                          30                            50
  CLUS_3                          19                            17
  CLUS_4                          62                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(6P24.3) MUTATED       49     68     45
  AMP PEAK  8(6P24.3) WILD-TYPE     52     30     43
D8V9, multiclass
        clus
vv       AMP PEAK  8(6P24.3) MUTATED AMP PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                          49                            52
  CLUS_2                          68                            30
  CLUS_3                          45                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(6P24.3) MUTATED       77     35     36     14
  AMP PEAK  8(6P24.3) WILD-TYPE     41     54     19     11
D8V10, multiclass
        clus
vv       AMP PEAK  8(6P24.3) MUTATED AMP PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                          77                            41
  CLUS_2                          35                            54
  CLUS_3                          36                            19
  CLUS_4                          14                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(6Q12) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q12) MUTATED       26     13      3     22
  AMP PEAK  9(6Q12) WILD-TYPE     59     44     48     84
D9V1, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        26                          59
  CLUS_2                        13                          44
  CLUS_3                         3                          48
  CLUS_4                        22                          84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q12) MUTATED       22     24     18
  AMP PEAK  9(6Q12) WILD-TYPE     90     87     58
D9V2, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        22                          90
  CLUS_2                        24                          87
  CLUS_3                        18                          58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q12) MUTATED        9     13      8      6
  AMP PEAK  9(6Q12) WILD-TYPE     38     45     18     32
D9V3, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                         9                          38
  CLUS_2                        13                          45
  CLUS_3                         8                          18
  CLUS_4                         6                          32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q12) MUTATED        3     18      4     11
  AMP PEAK  9(6Q12) WILD-TYPE     24     40     31     38
D9V4, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                         3                          24
  CLUS_2                        18                          40
  CLUS_3                         4                          31
  CLUS_4                        11                          38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q12) MUTATED       16     25     23
  AMP PEAK  9(6Q12) WILD-TYPE     83     62     89
D9V5, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        16                          83
  CLUS_2                        25                          62
  CLUS_3                        23                          89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q12) MUTATED       14     44      6
  AMP PEAK  9(6Q12) WILD-TYPE     56    134     44
D9V6, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        14                          56
  CLUS_2                        44                         134
  CLUS_3                         6                          44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(6Q12) MUTATED       20     20     17      4      1
  AMP PEAK  9(6Q12) WILD-TYPE     45     71     60     38     11
D9V7, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        20                          45
  CLUS_2                        20                          71
  CLUS_3                        17                          60
  CLUS_4                         4                          38
  CLUS_5                         1                          11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q12) MUTATED       23     14      4     21
  AMP PEAK  9(6Q12) WILD-TYPE     53     66     32     74
D9V8, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        23                          53
  CLUS_2                        14                          66
  CLUS_3                         4                          32
  CLUS_4                        21                          74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(6Q12) MUTATED       19     25     18
  AMP PEAK  9(6Q12) WILD-TYPE     82     73     70
D9V9, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        19                          82
  CLUS_2                        25                          73
  CLUS_3                        18                          70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(6Q12) MUTATED       29     16     14      3
  AMP PEAK  9(6Q12) WILD-TYPE     89     73     41     22
D9V10, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                        29                          89
  CLUS_2                        16                          73
  CLUS_3                        14                          41
  CLUS_4                         3                          22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(7P22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P22.1) MUTATED       47     34     41     42
  AMP PEAK 10(7P22.1) WILD-TYPE     38     23     10     64
D10V1, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          47                            38
  CLUS_2                          34                            23
  CLUS_3                          41                            10
  CLUS_4                          42                            64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P22.1) MUTATED       64     59     41
  AMP PEAK 10(7P22.1) WILD-TYPE     48     52     35
D10V2, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          64                            48
  CLUS_2                          59                            52
  CLUS_3                          41                            35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P22.1) MUTATED       24     35     14     18
  AMP PEAK 10(7P22.1) WILD-TYPE     23     23     12     20
D10V3, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          24                            23
  CLUS_2                          35                            23
  CLUS_3                          14                            12
  CLUS_4                          18                            20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P22.1) MUTATED       15     31     14     31
  AMP PEAK 10(7P22.1) WILD-TYPE     12     27     21     18
D10V4, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          15                            12
  CLUS_2                          31                            27
  CLUS_3                          14                            21
  CLUS_4                          31                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P22.1) MUTATED       65     41     58
  AMP PEAK 10(7P22.1) WILD-TYPE     34     46     54
D10V5, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          65                            34
  CLUS_2                          41                            46
  CLUS_3                          58                            54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P22.1) MUTATED       41     91     32
  AMP PEAK 10(7P22.1) WILD-TYPE     29     87     18
D10V6, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          41                            29
  CLUS_2                          91                            87
  CLUS_3                          32                            18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(7P22.1) MUTATED       34     49     39     25      9
  AMP PEAK 10(7P22.1) WILD-TYPE     31     42     38     17      3
D10V7, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          34                            31
  CLUS_2                          49                            42
  CLUS_3                          39                            38
  CLUS_4                          25                            17
  CLUS_5                           9                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P22.1) MUTATED       37     47     22     50
  AMP PEAK 10(7P22.1) WILD-TYPE     39     33     14     45
D10V8, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          37                            39
  CLUS_2                          47                            33
  CLUS_3                          22                            14
  CLUS_4                          50                            45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(7P22.1) MUTATED       58     53     45
  AMP PEAK 10(7P22.1) WILD-TYPE     43     45     43
D10V9, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          58                            43
  CLUS_2                          53                            45
  CLUS_3                          45                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(7P22.1) MUTATED       62     55     24     15
  AMP PEAK 10(7P22.1) WILD-TYPE     56     34     31     10
D10V10, multiclass
        clus
vv       AMP PEAK 10(7P22.1) MUTATED AMP PEAK 10(7P22.1) WILD-TYPE
  CLUS_1                          62                            56
  CLUS_2                          55                            34
  CLUS_3                          24                            31
  CLUS_4                          15                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(7Q34) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q34) MUTATED       45     35     47     50
  AMP PEAK 11(7Q34) WILD-TYPE     40     22      4     56
D11V1, multiclass
        clus
vv       AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE
  CLUS_1                        45                          40
  CLUS_2                        35                          22
  CLUS_3                        47                           4
  CLUS_4                        50                          56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q34) MUTATED       68     72     37
  AMP PEAK 11(7Q34) WILD-TYPE     44     39     39
D11V2, multiclass
        clus
vv       AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE
  CLUS_1                        68                          44
  CLUS_2                        72                          39
  CLUS_3                        37                          39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q34) MUTATED       25     35     19     26
  AMP PEAK 11(7Q34) WILD-TYPE     22     23      7     12
D11V3, multiclass
        clus
vv       AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE
  CLUS_1                        25                          22
  CLUS_2                        35                          23
  CLUS_3                        19                           7
  CLUS_4                        26                          12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q34) MUTATED       17     35     21     32
  AMP PEAK 11(7Q34) WILD-TYPE     10     23     14     17
D11V4, multiclass
        clus
vv       AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE
  CLUS_1                        17                          10
  CLUS_2                        35                          23
  CLUS_3                        21                          14
  CLUS_4                        32                          17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q34) MUTATED       68     49     60
  AMP PEAK 11(7Q34) WILD-TYPE     31     38     52
D11V5, multiclass
        clus
vv       AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE
  CLUS_1                        68                          31
  CLUS_2                        49                          38
  CLUS_3                        60                          52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q34) MUTATED       33    108     36
  AMP PEAK 11(7Q34) WILD-TYPE     37     70     14
D11V6, multiclass
        clus
vv       AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE
  CLUS_1                        33                          37
  CLUS_2                       108                          70
  CLUS_3                        36                          14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(7Q34) MUTATED       35     55     43     28      8
  AMP PEAK 11(7Q34) WILD-TYPE     30     36     34     14      4
D11V7, multiclass
        clus
vv       AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE
  CLUS_1                        35                          30
  CLUS_2                        55                          36
  CLUS_3                        43                          34
  CLUS_4                        28                          14
  CLUS_5                         8                           4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q34) MUTATED       46     46     25     52
  AMP PEAK 11(7Q34) WILD-TYPE     30     34     11     43
D11V8, multiclass
        clus
vv       AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE
  CLUS_1                        46                          30
  CLUS_2                        46                          34
  CLUS_3                        25                          11
  CLUS_4                        52                          43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(7Q34) MUTATED       65     56     48
  AMP PEAK 11(7Q34) WILD-TYPE     36     42     40
D11V9, multiclass
        clus
vv       AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE
  CLUS_1                        65                          36
  CLUS_2                        56                          42
  CLUS_3                        48                          40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(7Q34) MUTATED       67     54     32     16
  AMP PEAK 11(7Q34) WILD-TYPE     51     35     23      9
D11V10, multiclass
        clus
vv       AMP PEAK 11(7Q34) MUTATED AMP PEAK 11(7Q34) WILD-TYPE
  CLUS_1                        67                          51
  CLUS_2                        54                          35
  CLUS_3                        32                          23
  CLUS_4                        16                           9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(8Q11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q11.21) MUTATED       44     37     29     27
  AMP PEAK 12(8Q11.21) WILD-TYPE     41     20     22     79
D12V1, multiclass
        clus
vv       AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE
  CLUS_1                           44                             41
  CLUS_2                           37                             20
  CLUS_3                           29                             22
  CLUS_4                           27                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q11.21) MUTATED       44     48     45
  AMP PEAK 12(8Q11.21) WILD-TYPE     68     63     31
D12V2, multiclass
        clus
vv       AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE
  CLUS_1                           44                             68
  CLUS_2                           48                             63
  CLUS_3                           45                             31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q11.21) MUTATED       19     22     14     17
  AMP PEAK 12(8Q11.21) WILD-TYPE     28     36     12     21
D12V3, multiclass
        clus
vv       AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE
  CLUS_1                           19                             28
  CLUS_2                           22                             36
  CLUS_3                           14                             12
  CLUS_4                           17                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q11.21) MUTATED       13     28     16     15
  AMP PEAK 12(8Q11.21) WILD-TYPE     14     30     19     34
D12V4, multiclass
        clus
vv       AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE
  CLUS_1                           13                             14
  CLUS_2                           28                             30
  CLUS_3                           16                             19
  CLUS_4                           15                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q11.21) MUTATED       57     33     47
  AMP PEAK 12(8Q11.21) WILD-TYPE     42     54     65
D12V5, multiclass
        clus
vv       AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE
  CLUS_1                           57                             42
  CLUS_2                           33                             54
  CLUS_3                           47                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q11.21) MUTATED       35     76     26
  AMP PEAK 12(8Q11.21) WILD-TYPE     35    102     24
D12V6, multiclass
        clus
vv       AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE
  CLUS_1                           35                             35
  CLUS_2                           76                            102
  CLUS_3                           26                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(8Q11.21) MUTATED       30     37     40     18      6
  AMP PEAK 12(8Q11.21) WILD-TYPE     35     54     37     24      6
D12V7, multiclass
        clus
vv       AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE
  CLUS_1                           30                             35
  CLUS_2                           37                             54
  CLUS_3                           40                             37
  CLUS_4                           18                             24
  CLUS_5                            6                              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q11.21) MUTATED       35     34     15     47
  AMP PEAK 12(8Q11.21) WILD-TYPE     41     46     21     48
D12V8, multiclass
        clus
vv       AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE
  CLUS_1                           35                             41
  CLUS_2                           34                             46
  CLUS_3                           15                             21
  CLUS_4                           47                             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(8Q11.21) MUTATED       50     35     46
  AMP PEAK 12(8Q11.21) WILD-TYPE     51     63     42
D12V9, multiclass
        clus
vv       AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE
  CLUS_1                           50                             51
  CLUS_2                           35                             63
  CLUS_3                           46                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(8Q11.21) MUTATED       48     42     30     11
  AMP PEAK 12(8Q11.21) WILD-TYPE     70     47     25     14
D12V10, multiclass
        clus
vv       AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE
  CLUS_1                           48                             70
  CLUS_2                           42                             47
  CLUS_3                           30                             25
  CLUS_4                           11                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(8Q24.21) MUTATED       53     41     30     34
  AMP PEAK 13(8Q24.21) WILD-TYPE     32     16     21     72
D13V1, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           53                             32
  CLUS_2                           41                             16
  CLUS_3                           30                             21
  CLUS_4                           34                             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q24.21) MUTATED       54     53     51
  AMP PEAK 13(8Q24.21) WILD-TYPE     58     58     25
D13V2, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           54                             58
  CLUS_2                           53                             58
  CLUS_3                           51                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(8Q24.21) MUTATED       23     29     16     20
  AMP PEAK 13(8Q24.21) WILD-TYPE     24     29     10     18
D13V3, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           23                             24
  CLUS_2                           29                             29
  CLUS_3                           16                             10
  CLUS_4                           20                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(8Q24.21) MUTATED       15     30     19     24
  AMP PEAK 13(8Q24.21) WILD-TYPE     12     28     16     25
D13V4, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           15                             12
  CLUS_2                           30                             28
  CLUS_3                           19                             16
  CLUS_4                           24                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q24.21) MUTATED       63     36     58
  AMP PEAK 13(8Q24.21) WILD-TYPE     36     51     54
D13V5, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           63                             36
  CLUS_2                           36                             51
  CLUS_3                           58                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q24.21) MUTATED       37     91     29
  AMP PEAK 13(8Q24.21) WILD-TYPE     33     87     21
D13V6, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           37                             33
  CLUS_2                           91                             87
  CLUS_3                           29                             21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(8Q24.21) MUTATED       30     46     46     23      7
  AMP PEAK 13(8Q24.21) WILD-TYPE     35     45     31     19      5
D13V7, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           30                             35
  CLUS_2                           46                             45
  CLUS_3                           46                             31
  CLUS_4                           23                             19
  CLUS_5                            7                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(8Q24.21) MUTATED       41     37     19     55
  AMP PEAK 13(8Q24.21) WILD-TYPE     35     43     17     40
D13V8, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           41                             35
  CLUS_2                           37                             43
  CLUS_3                           19                             17
  CLUS_4                           55                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(8Q24.21) MUTATED       55     46     51
  AMP PEAK 13(8Q24.21) WILD-TYPE     46     52     37
D13V9, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           55                             46
  CLUS_2                           46                             52
  CLUS_3                           51                             37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(8Q24.21) MUTATED       58     46     35     13
  AMP PEAK 13(8Q24.21) WILD-TYPE     60     43     20     12
D13V10, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           58                             60
  CLUS_2                           46                             43
  CLUS_3                           35                             20
  CLUS_4                           13                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(11Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(11Q13.3) MUTATED       11     19     10     18
  AMP PEAK 14(11Q13.3) WILD-TYPE     74     38     41     88
D14V1, multiclass
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                           11                             74
  CLUS_2                           19                             38
  CLUS_3                           10                             41
  CLUS_4                           18                             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(11Q13.3) MUTATED       18     21     19
  AMP PEAK 14(11Q13.3) WILD-TYPE     94     90     57
D14V2, multiclass
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                           18                             94
  CLUS_2                           21                             90
  CLUS_3                           19                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(11Q13.3) MUTATED       11     12      4      8
  AMP PEAK 14(11Q13.3) WILD-TYPE     36     46     22     30
D14V3, multiclass
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                           11                             36
  CLUS_2                           12                             46
  CLUS_3                            4                             22
  CLUS_4                            8                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(11Q13.3) MUTATED        6     13      8      8
  AMP PEAK 14(11Q13.3) WILD-TYPE     21     45     27     41
D14V4, multiclass
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                            6                             21
  CLUS_2                           13                             45
  CLUS_3                            8                             27
  CLUS_4                            8                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(11Q13.3) MUTATED       20     13     25
  AMP PEAK 14(11Q13.3) WILD-TYPE     79     74     87
D14V5, multiclass
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                           20                             79
  CLUS_2                           13                             74
  CLUS_3                           25                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(11Q13.3) MUTATED       13     39      6
  AMP PEAK 14(11Q13.3) WILD-TYPE     57    139     44
D14V6, multiclass
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                           13                             57
  CLUS_2                           39                            139
  CLUS_3                            6                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(11Q13.3) MUTATED       15     16     18      4      2
  AMP PEAK 14(11Q13.3) WILD-TYPE     50     75     59     38     10
D14V7, multiclass
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                           15                             50
  CLUS_2                           16                             75
  CLUS_3                           18                             59
  CLUS_4                            4                             38
  CLUS_5                            2                             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(11Q13.3) MUTATED       15     15      2     23
  AMP PEAK 14(11Q13.3) WILD-TYPE     61     65     34     72
D14V8, multiclass
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                           15                             61
  CLUS_2                           15                             65
  CLUS_3                            2                             34
  CLUS_4                           23                             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(11Q13.3) MUTATED       20     18     17
  AMP PEAK 14(11Q13.3) WILD-TYPE     81     80     71
D14V9, multiclass
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                           20                             81
  CLUS_2                           18                             80
  CLUS_3                           17                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(11Q13.3) MUTATED       27     15     11      2
  AMP PEAK 14(11Q13.3) WILD-TYPE     91     74     44     23
D14V10, multiclass
        clus
vv       AMP PEAK 14(11Q13.3) MUTATED AMP PEAK 14(11Q13.3) WILD-TYPE
  CLUS_1                           27                             91
  CLUS_2                           15                             74
  CLUS_3                           11                             44
  CLUS_4                            2                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(11Q13.4) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(11Q13.4) MUTATED        9     21      9     15
  AMP PEAK 15(11Q13.4) WILD-TYPE     76     36     42     91
D15V1, multiclass
        clus
vv       AMP PEAK 15(11Q13.4) MUTATED AMP PEAK 15(11Q13.4) WILD-TYPE
  CLUS_1                            9                             76
  CLUS_2                           21                             36
  CLUS_3                            9                             42
  CLUS_4                           15                             91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11Q13.4) MUTATED       16     18     20
  AMP PEAK 15(11Q13.4) WILD-TYPE     96     93     56
D15V2, multiclass
        clus
vv       AMP PEAK 15(11Q13.4) MUTATED AMP PEAK 15(11Q13.4) WILD-TYPE
  CLUS_1                           16                             96
  CLUS_2                           18                             93
  CLUS_3                           20                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(11Q13.4) MUTATED        8     12      4      8
  AMP PEAK 15(11Q13.4) WILD-TYPE     39     46     22     30
D15V3, multiclass
        clus
vv       AMP PEAK 15(11Q13.4) MUTATED AMP PEAK 15(11Q13.4) WILD-TYPE
  CLUS_1                            8                             39
  CLUS_2                           12                             46
  CLUS_3                            4                             22
  CLUS_4                            8                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(11Q13.4) MUTATED        5     13      6      8
  AMP PEAK 15(11Q13.4) WILD-TYPE     22     45     29     41
D15V4, multiclass
        clus
vv       AMP PEAK 15(11Q13.4) MUTATED AMP PEAK 15(11Q13.4) WILD-TYPE
  CLUS_1                            5                             22
  CLUS_2                           13                             45
  CLUS_3                            6                             29
  CLUS_4                            8                             41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11Q13.4) MUTATED       21     10     23
  AMP PEAK 15(11Q13.4) WILD-TYPE     78     77     89
D15V5, multiclass
        clus
vv       AMP PEAK 15(11Q13.4) MUTATED AMP PEAK 15(11Q13.4) WILD-TYPE
  CLUS_1                           21                             78
  CLUS_2                           10                             77
  CLUS_3                           23                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11Q13.4) MUTATED       13     34      7
  AMP PEAK 15(11Q13.4) WILD-TYPE     57    144     43
D15V6, multiclass
        clus
vv       AMP PEAK 15(11Q13.4) MUTATED AMP PEAK 15(11Q13.4) WILD-TYPE
  CLUS_1                           13                             57
  CLUS_2                           34                            144
  CLUS_3                            7                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(11Q13.4) MUTATED       15     13     18      3      2
  AMP PEAK 15(11Q13.4) WILD-TYPE     50     78     59     39     10
D15V7, multiclass
        clus
vv       AMP PEAK 15(11Q13.4) MUTATED AMP PEAK 15(11Q13.4) WILD-TYPE
  CLUS_1                           15                             50
  CLUS_2                           13                             78
  CLUS_3                           18                             59
  CLUS_4                            3                             39
  CLUS_5                            2                             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(11Q13.4) MUTATED       14     14      1     22
  AMP PEAK 15(11Q13.4) WILD-TYPE     62     66     35     73
D15V8, multiclass
        clus
vv       AMP PEAK 15(11Q13.4) MUTATED AMP PEAK 15(11Q13.4) WILD-TYPE
  CLUS_1                           14                             62
  CLUS_2                           14                             66
  CLUS_3                            1                             35
  CLUS_4                           22                             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(11Q13.4) MUTATED       18     16     17
  AMP PEAK 15(11Q13.4) WILD-TYPE     83     82     71
D15V9, multiclass
        clus
vv       AMP PEAK 15(11Q13.4) MUTATED AMP PEAK 15(11Q13.4) WILD-TYPE
  CLUS_1                           18                             83
  CLUS_2                           16                             82
  CLUS_3                           17                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(11Q13.4) MUTATED       24     15     11      1
  AMP PEAK 15(11Q13.4) WILD-TYPE     94     74     44     24
D15V10, multiclass
        clus
vv       AMP PEAK 15(11Q13.4) MUTATED AMP PEAK 15(11Q13.4) WILD-TYPE
  CLUS_1                           24                             94
  CLUS_2                           15                             74
  CLUS_3                           11                             44
  CLUS_4                            1                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(12Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(12Q14.1) MUTATED       18     10     14      9
  AMP PEAK 16(12Q14.1) WILD-TYPE     67     47     37     97
D16V1, multiclass
        clus
vv       AMP PEAK 16(12Q14.1) MUTATED AMP PEAK 16(12Q14.1) WILD-TYPE
  CLUS_1                           18                             67
  CLUS_2                           10                             47
  CLUS_3                           14                             37
  CLUS_4                            9                             97
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(12Q14.1) MUTATED       16     18     17
  AMP PEAK 16(12Q14.1) WILD-TYPE     96     93     59
D16V2, multiclass
        clus
vv       AMP PEAK 16(12Q14.1) MUTATED AMP PEAK 16(12Q14.1) WILD-TYPE
  CLUS_1                           16                             96
  CLUS_2                           18                             93
  CLUS_3                           17                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(12Q14.1) MUTATED        9     10      6      6
  AMP PEAK 16(12Q14.1) WILD-TYPE     38     48     20     32
D16V3, multiclass
        clus
vv       AMP PEAK 16(12Q14.1) MUTATED AMP PEAK 16(12Q14.1) WILD-TYPE
  CLUS_1                            9                             38
  CLUS_2                           10                             48
  CLUS_3                            6                             20
  CLUS_4                            6                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(12Q14.1) MUTATED        5      7      6     13
  AMP PEAK 16(12Q14.1) WILD-TYPE     22     51     29     36
D16V4, multiclass
        clus
vv       AMP PEAK 16(12Q14.1) MUTATED AMP PEAK 16(12Q14.1) WILD-TYPE
  CLUS_1                            5                             22
  CLUS_2                            7                             51
  CLUS_3                            6                             29
  CLUS_4                           13                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(12Q14.1) MUTATED       20      8     23
  AMP PEAK 16(12Q14.1) WILD-TYPE     79     79     89
D16V5, multiclass
        clus
vv       AMP PEAK 16(12Q14.1) MUTATED AMP PEAK 16(12Q14.1) WILD-TYPE
  CLUS_1                           20                             79
  CLUS_2                            8                             79
  CLUS_3                           23                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(12Q14.1) MUTATED       16     24     11
  AMP PEAK 16(12Q14.1) WILD-TYPE     54    154     39
D16V6, multiclass
        clus
vv       AMP PEAK 16(12Q14.1) MUTATED AMP PEAK 16(12Q14.1) WILD-TYPE
  CLUS_1                           16                             54
  CLUS_2                           24                            154
  CLUS_3                           11                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(12Q14.1) MUTATED        9     19     14      7      1
  AMP PEAK 16(12Q14.1) WILD-TYPE     56     72     63     35     11
D16V7, multiclass
        clus
vv       AMP PEAK 16(12Q14.1) MUTATED AMP PEAK 16(12Q14.1) WILD-TYPE
  CLUS_1                            9                             56
  CLUS_2                           19                             72
  CLUS_3                           14                             63
  CLUS_4                            7                             35
  CLUS_5                            1                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(12Q14.1) MUTATED       16     10      8     16
  AMP PEAK 16(12Q14.1) WILD-TYPE     60     70     28     79
D16V8, multiclass
        clus
vv       AMP PEAK 16(12Q14.1) MUTATED AMP PEAK 16(12Q14.1) WILD-TYPE
  CLUS_1                           16                             60
  CLUS_2                           10                             70
  CLUS_3                            8                             28
  CLUS_4                           16                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(12Q14.1) MUTATED       12     22     16
  AMP PEAK 16(12Q14.1) WILD-TYPE     89     76     72
D16V9, multiclass
        clus
vv       AMP PEAK 16(12Q14.1) MUTATED AMP PEAK 16(12Q14.1) WILD-TYPE
  CLUS_1                           12                             89
  CLUS_2                           22                             76
  CLUS_3                           16                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(12Q14.1) MUTATED       22     13     10      5
  AMP PEAK 16(12Q14.1) WILD-TYPE     96     76     45     20
D16V10, multiclass
        clus
vv       AMP PEAK 16(12Q14.1) MUTATED AMP PEAK 16(12Q14.1) WILD-TYPE
  CLUS_1                           22                             96
  CLUS_2                           13                             76
  CLUS_3                           10                             45
  CLUS_4                            5                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(12Q15) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(12Q15) MUTATED       19      7     14     10
  AMP PEAK 17(12Q15) WILD-TYPE     66     50     37     96
D17V1, multiclass
        clus
vv       AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE
  CLUS_1                         19                           66
  CLUS_2                          7                           50
  CLUS_3                         14                           37
  CLUS_4                         10                           96
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12Q15) MUTATED       21     16     13
  AMP PEAK 17(12Q15) WILD-TYPE     91     95     63
D17V2, multiclass
        clus
vv       AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE
  CLUS_1                         21                           91
  CLUS_2                         16                           95
  CLUS_3                         13                           63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(12Q15) MUTATED        8      9      7      7
  AMP PEAK 17(12Q15) WILD-TYPE     39     49     19     31
D17V3, multiclass
        clus
vv       AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE
  CLUS_1                          8                           39
  CLUS_2                          9                           49
  CLUS_3                          7                           19
  CLUS_4                          7                           31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(12Q15) MUTATED        5      8      6     12
  AMP PEAK 17(12Q15) WILD-TYPE     22     50     29     37
D17V4, multiclass
        clus
vv       AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE
  CLUS_1                          5                           22
  CLUS_2                          8                           50
  CLUS_3                          6                           29
  CLUS_4                         12                           37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12Q15) MUTATED       18     10     22
  AMP PEAK 17(12Q15) WILD-TYPE     81     77     90
D17V5, multiclass
        clus
vv       AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE
  CLUS_1                         18                           81
  CLUS_2                         10                           77
  CLUS_3                         22                           90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12Q15) MUTATED       14     26     10
  AMP PEAK 17(12Q15) WILD-TYPE     56    152     40
D17V6, multiclass
        clus
vv       AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE
  CLUS_1                         14                           56
  CLUS_2                         26                          152
  CLUS_3                         10                           40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(12Q15) MUTATED        8     18     15      8      1
  AMP PEAK 17(12Q15) WILD-TYPE     57     73     62     34     11
D17V7, multiclass
        clus
vv       AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE
  CLUS_1                          8                           57
  CLUS_2                         18                           73
  CLUS_3                         15                           62
  CLUS_4                          8                           34
  CLUS_5                          1                           11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(12Q15) MUTATED       14     12      9     15
  AMP PEAK 17(12Q15) WILD-TYPE     62     68     27     80
D17V8, multiclass
        clus
vv       AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE
  CLUS_1                         14                           62
  CLUS_2                         12                           68
  CLUS_3                          9                           27
  CLUS_4                         15                           80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(12Q15) MUTATED       14     20     16
  AMP PEAK 17(12Q15) WILD-TYPE     87     78     72
D17V9, multiclass
        clus
vv       AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE
  CLUS_1                         14                           87
  CLUS_2                         20                           78
  CLUS_3                         16                           72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(12Q15) MUTATED       21     15      8      6
  AMP PEAK 17(12Q15) WILD-TYPE     97     74     47     19
D17V10, multiclass
        clus
vv       AMP PEAK 17(12Q15) MUTATED AMP PEAK 17(12Q15) WILD-TYPE
  CLUS_1                         21                           97
  CLUS_2                         15                           74
  CLUS_3                          8                           47
  CLUS_4                          6                           19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(13Q12.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(13Q12.3) MUTATED       32     32     10     11
  AMP PEAK 18(13Q12.3) WILD-TYPE     53     25     41     95
D18V1, multiclass
        clus
vv       AMP PEAK 18(13Q12.3) MUTATED AMP PEAK 18(13Q12.3) WILD-TYPE
  CLUS_1                           32                             53
  CLUS_2                           32                             25
  CLUS_3                           10                             41
  CLUS_4                           11                             95
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(13Q12.3) MUTATED       29     20     36
  AMP PEAK 18(13Q12.3) WILD-TYPE     83     91     40
D18V2, multiclass
        clus
vv       AMP PEAK 18(13Q12.3) MUTATED AMP PEAK 18(13Q12.3) WILD-TYPE
  CLUS_1                           29                             83
  CLUS_2                           20                             91
  CLUS_3                           36                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(13Q12.3) MUTATED       14     15      4     13
  AMP PEAK 18(13Q12.3) WILD-TYPE     33     43     22     25
D18V3, multiclass
        clus
vv       AMP PEAK 18(13Q12.3) MUTATED AMP PEAK 18(13Q12.3) WILD-TYPE
  CLUS_1                           14                             33
  CLUS_2                           15                             43
  CLUS_3                            4                             22
  CLUS_4                           13                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(13Q12.3) MUTATED        9     17      9     11
  AMP PEAK 18(13Q12.3) WILD-TYPE     18     41     26     38
D18V4, multiclass
        clus
vv       AMP PEAK 18(13Q12.3) MUTATED AMP PEAK 18(13Q12.3) WILD-TYPE
  CLUS_1                            9                             18
  CLUS_2                           17                             41
  CLUS_3                            9                             26
  CLUS_4                           11                             38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(13Q12.3) MUTATED       40     17     28
  AMP PEAK 18(13Q12.3) WILD-TYPE     59     70     84
D18V5, multiclass
        clus
vv       AMP PEAK 18(13Q12.3) MUTATED AMP PEAK 18(13Q12.3) WILD-TYPE
  CLUS_1                           40                             59
  CLUS_2                           17                             70
  CLUS_3                           28                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(13Q12.3) MUTATED       24     41     20
  AMP PEAK 18(13Q12.3) WILD-TYPE     46    137     30
D18V6, multiclass
        clus
vv       AMP PEAK 18(13Q12.3) MUTATED AMP PEAK 18(13Q12.3) WILD-TYPE
  CLUS_1                           24                             46
  CLUS_2                           41                            137
  CLUS_3                           20                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(13Q12.3) MUTATED       17     28     23      9      3
  AMP PEAK 18(13Q12.3) WILD-TYPE     48     63     54     33      9
D18V7, multiclass
        clus
vv       AMP PEAK 18(13Q12.3) MUTATED AMP PEAK 18(13Q12.3) WILD-TYPE
  CLUS_1                           17                             48
  CLUS_2                           28                             63
  CLUS_3                           23                             54
  CLUS_4                            9                             33
  CLUS_5                            3                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(13Q12.3) MUTATED       22     22      7     29
  AMP PEAK 18(13Q12.3) WILD-TYPE     54     58     29     66
D18V8, multiclass
        clus
vv       AMP PEAK 18(13Q12.3) MUTATED AMP PEAK 18(13Q12.3) WILD-TYPE
  CLUS_1                           22                             54
  CLUS_2                           22                             58
  CLUS_3                            7                             29
  CLUS_4                           29                             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(13Q12.3) MUTATED       24     31     25
  AMP PEAK 18(13Q12.3) WILD-TYPE     77     67     63
D18V9, multiclass
        clus
vv       AMP PEAK 18(13Q12.3) MUTATED AMP PEAK 18(13Q12.3) WILD-TYPE
  CLUS_1                           24                             77
  CLUS_2                           31                             67
  CLUS_3                           25                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(13Q12.3) MUTATED       32     25     17      6
  AMP PEAK 18(13Q12.3) WILD-TYPE     86     64     38     19
D18V10, multiclass
        clus
vv       AMP PEAK 18(13Q12.3) MUTATED AMP PEAK 18(13Q12.3) WILD-TYPE
  CLUS_1                           32                             86
  CLUS_2                           25                             64
  CLUS_3                           17                             38
  CLUS_4                            6                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(15Q26.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(15Q26.2) MUTATED       27     16     30     26
  AMP PEAK 19(15Q26.2) WILD-TYPE     58     41     21     80
D19V1, multiclass
        clus
vv       AMP PEAK 19(15Q26.2) MUTATED AMP PEAK 19(15Q26.2) WILD-TYPE
  CLUS_1                           27                             58
  CLUS_2                           16                             41
  CLUS_3                           30                             21
  CLUS_4                           26                             80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(15Q26.2) MUTATED       34     35     30
  AMP PEAK 19(15Q26.2) WILD-TYPE     78     76     46
D19V2, multiclass
        clus
vv       AMP PEAK 19(15Q26.2) MUTATED AMP PEAK 19(15Q26.2) WILD-TYPE
  CLUS_1                           34                             78
  CLUS_2                           35                             76
  CLUS_3                           30                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(15Q26.2) MUTATED       16     18      8     14
  AMP PEAK 19(15Q26.2) WILD-TYPE     31     40     18     24
D19V3, multiclass
        clus
vv       AMP PEAK 19(15Q26.2) MUTATED AMP PEAK 19(15Q26.2) WILD-TYPE
  CLUS_1                           16                             31
  CLUS_2                           18                             40
  CLUS_3                            8                             18
  CLUS_4                           14                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(15Q26.2) MUTATED        8     18     11     19
  AMP PEAK 19(15Q26.2) WILD-TYPE     19     40     24     30
D19V4, multiclass
        clus
vv       AMP PEAK 19(15Q26.2) MUTATED AMP PEAK 19(15Q26.2) WILD-TYPE
  CLUS_1                            8                             19
  CLUS_2                           18                             40
  CLUS_3                           11                             24
  CLUS_4                           19                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(15Q26.2) MUTATED       39     26     34
  AMP PEAK 19(15Q26.2) WILD-TYPE     60     61     78
D19V5, multiclass
        clus
vv       AMP PEAK 19(15Q26.2) MUTATED AMP PEAK 19(15Q26.2) WILD-TYPE
  CLUS_1                           39                             60
  CLUS_2                           26                             61
  CLUS_3                           34                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(15Q26.2) MUTATED       16     61     22
  AMP PEAK 19(15Q26.2) WILD-TYPE     54    117     28
D19V6, multiclass
        clus
vv       AMP PEAK 19(15Q26.2) MUTATED AMP PEAK 19(15Q26.2) WILD-TYPE
  CLUS_1                           16                             54
  CLUS_2                           61                            117
  CLUS_3                           22                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(15Q26.2) MUTATED       23     28     27     14      2
  AMP PEAK 19(15Q26.2) WILD-TYPE     42     63     50     28     10
D19V7, multiclass
        clus
vv       AMP PEAK 19(15Q26.2) MUTATED AMP PEAK 19(15Q26.2) WILD-TYPE
  CLUS_1                           23                             42
  CLUS_2                           28                             63
  CLUS_3                           27                             50
  CLUS_4                           14                             28
  CLUS_5                            2                             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(15Q26.2) MUTATED       16     30     11     37
  AMP PEAK 19(15Q26.2) WILD-TYPE     60     50     25     58
D19V8, multiclass
        clus
vv       AMP PEAK 19(15Q26.2) MUTATED AMP PEAK 19(15Q26.2) WILD-TYPE
  CLUS_1                           16                             60
  CLUS_2                           30                             50
  CLUS_3                           11                             25
  CLUS_4                           37                             58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(15Q26.2) MUTATED       33     32     29
  AMP PEAK 19(15Q26.2) WILD-TYPE     68     66     59
D19V9, multiclass
        clus
vv       AMP PEAK 19(15Q26.2) MUTATED AMP PEAK 19(15Q26.2) WILD-TYPE
  CLUS_1                           33                             68
  CLUS_2                           32                             66
  CLUS_3                           29                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(15Q26.2) MUTATED       37     35     14      8
  AMP PEAK 19(15Q26.2) WILD-TYPE     81     54     41     17
D19V10, multiclass
        clus
vv       AMP PEAK 19(15Q26.2) MUTATED AMP PEAK 19(15Q26.2) WILD-TYPE
  CLUS_1                           37                             81
  CLUS_2                           35                             54
  CLUS_3                           14                             41
  CLUS_4                            8                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(17Q25.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(17Q25.3) MUTATED       39     23     19     19
  AMP PEAK 20(17Q25.3) WILD-TYPE     46     34     32     87
D20V1, multiclass
        clus
vv       AMP PEAK 20(17Q25.3) MUTATED AMP PEAK 20(17Q25.3) WILD-TYPE
  CLUS_1                           39                             46
  CLUS_2                           23                             34
  CLUS_3                           19                             32
  CLUS_4                           19                             87
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(17Q25.3) MUTATED       37     28     35
  AMP PEAK 20(17Q25.3) WILD-TYPE     75     83     41
D20V2, multiclass
        clus
vv       AMP PEAK 20(17Q25.3) MUTATED AMP PEAK 20(17Q25.3) WILD-TYPE
  CLUS_1                           37                             75
  CLUS_2                           28                             83
  CLUS_3                           35                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(17Q25.3) MUTATED       11     24     15     16
  AMP PEAK 20(17Q25.3) WILD-TYPE     36     34     11     22
D20V3, multiclass
        clus
vv       AMP PEAK 20(17Q25.3) MUTATED AMP PEAK 20(17Q25.3) WILD-TYPE
  CLUS_1                           11                             36
  CLUS_2                           24                             34
  CLUS_3                           15                             11
  CLUS_4                           16                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(17Q25.3) MUTATED        9     22      9     26
  AMP PEAK 20(17Q25.3) WILD-TYPE     18     36     26     23
D20V4, multiclass
        clus
vv       AMP PEAK 20(17Q25.3) MUTATED AMP PEAK 20(17Q25.3) WILD-TYPE
  CLUS_1                            9                             18
  CLUS_2                           22                             36
  CLUS_3                            9                             26
  CLUS_4                           26                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(17Q25.3) MUTATED       29     25     46
  AMP PEAK 20(17Q25.3) WILD-TYPE     70     62     66
D20V5, multiclass
        clus
vv       AMP PEAK 20(17Q25.3) MUTATED AMP PEAK 20(17Q25.3) WILD-TYPE
  CLUS_1                           29                             70
  CLUS_2                           25                             62
  CLUS_3                           46                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(17Q25.3) MUTATED       23     62     15
  AMP PEAK 20(17Q25.3) WILD-TYPE     47    116     35
D20V6, multiclass
        clus
vv       AMP PEAK 20(17Q25.3) MUTATED AMP PEAK 20(17Q25.3) WILD-TYPE
  CLUS_1                           23                             47
  CLUS_2                           62                            116
  CLUS_3                           15                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(17Q25.3) MUTATED       22     35     24     15      3
  AMP PEAK 20(17Q25.3) WILD-TYPE     43     56     53     27      9
D20V7, multiclass
        clus
vv       AMP PEAK 20(17Q25.3) MUTATED AMP PEAK 20(17Q25.3) WILD-TYPE
  CLUS_1                           22                             43
  CLUS_2                           35                             56
  CLUS_3                           24                             53
  CLUS_4                           15                             27
  CLUS_5                            3                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(17Q25.3) MUTATED       28     19     11     41
  AMP PEAK 20(17Q25.3) WILD-TYPE     48     61     25     54
D20V8, multiclass
        clus
vv       AMP PEAK 20(17Q25.3) MUTATED AMP PEAK 20(17Q25.3) WILD-TYPE
  CLUS_1                           28                             48
  CLUS_2                           19                             61
  CLUS_3                           11                             25
  CLUS_4                           41                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(17Q25.3) MUTATED       30     44     25
  AMP PEAK 20(17Q25.3) WILD-TYPE     71     54     63
D20V9, multiclass
        clus
vv       AMP PEAK 20(17Q25.3) MUTATED AMP PEAK 20(17Q25.3) WILD-TYPE
  CLUS_1                           30                             71
  CLUS_2                           44                             54
  CLUS_3                           25                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(17Q25.3) MUTATED       53     22     16      8
  AMP PEAK 20(17Q25.3) WILD-TYPE     65     67     39     17
D20V10, multiclass
        clus
vv       AMP PEAK 20(17Q25.3) MUTATED AMP PEAK 20(17Q25.3) WILD-TYPE
  CLUS_1                           53                             65
  CLUS_2                           22                             67
  CLUS_3                           16                             39
  CLUS_4                            8                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(19P13.2) MUTATED       16     15     12     13
  AMP PEAK 21(19P13.2) WILD-TYPE     69     42     39     93
D21V1, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                           16                             69
  CLUS_2                           15                             42
  CLUS_3                           12                             39
  CLUS_4                           13                             93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(19P13.2) MUTATED       21     17     18
  AMP PEAK 21(19P13.2) WILD-TYPE     91     94     58
D21V2, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                           21                             91
  CLUS_2                           17                             94
  CLUS_3                           18                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(19P13.2) MUTATED       10     13      6      4
  AMP PEAK 21(19P13.2) WILD-TYPE     37     45     20     34
D21V3, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                           10                             37
  CLUS_2                           13                             45
  CLUS_3                            6                             20
  CLUS_4                            4                             34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(19P13.2) MUTATED        6     12      6      9
  AMP PEAK 21(19P13.2) WILD-TYPE     21     46     29     40
D21V4, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                            6                             21
  CLUS_2                           12                             46
  CLUS_3                            6                             29
  CLUS_4                            9                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(19P13.2) MUTATED       27      9     20
  AMP PEAK 21(19P13.2) WILD-TYPE     72     78     92
D21V5, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                           27                             72
  CLUS_2                            9                             78
  CLUS_3                           20                             92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(19P13.2) MUTATED       12     29     15
  AMP PEAK 21(19P13.2) WILD-TYPE     58    149     35
D21V6, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                           12                             58
  CLUS_2                           29                            149
  CLUS_3                           15                             35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(19P13.2) MUTATED       12     16     13      9      2
  AMP PEAK 21(19P13.2) WILD-TYPE     53     75     64     33     10
D21V7, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                           12                             53
  CLUS_2                           16                             75
  CLUS_3                           13                             64
  CLUS_4                            9                             33
  CLUS_5                            2                             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(19P13.2) MUTATED       10     17      9     16
  AMP PEAK 21(19P13.2) WILD-TYPE     66     63     27     79
D21V8, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                           10                             66
  CLUS_2                           17                             63
  CLUS_3                            9                             27
  CLUS_4                           16                             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(19P13.2) MUTATED       20     16     16
  AMP PEAK 21(19P13.2) WILD-TYPE     81     82     72
D21V9, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                           20                             81
  CLUS_2                           16                             82
  CLUS_3                           16                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(19P13.2) MUTATED       15     20     11      6
  AMP PEAK 21(19P13.2) WILD-TYPE    103     69     44     19
D21V10, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                           15                            103
  CLUS_2                           20                             69
  CLUS_3                           11                             44
  CLUS_4                            6                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(20Q13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20Q13.33) MUTATED       47     36     36     34
  AMP PEAK 22(20Q13.33) WILD-TYPE     38     21     15     72
D22V1, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            47                              38
  CLUS_2                            36                              21
  CLUS_3                            36                              15
  CLUS_4                            34                              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20Q13.33) MUTATED       52     51     50
  AMP PEAK 22(20Q13.33) WILD-TYPE     60     60     26
D22V2, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            52                              60
  CLUS_2                            51                              60
  CLUS_3                            50                              26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20Q13.33) MUTATED       25     32     12     18
  AMP PEAK 22(20Q13.33) WILD-TYPE     22     26     14     20
D22V3, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            25                              22
  CLUS_2                            32                              26
  CLUS_3                            12                              14
  CLUS_4                            18                              20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20Q13.33) MUTATED       14     30     17     26
  AMP PEAK 22(20Q13.33) WILD-TYPE     13     28     18     23
D22V4, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            14                              13
  CLUS_2                            30                              28
  CLUS_3                            17                              18
  CLUS_4                            26                              23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20Q13.33) MUTATED       65     37     51
  AMP PEAK 22(20Q13.33) WILD-TYPE     34     50     61
D22V5, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            65                              34
  CLUS_2                            37                              50
  CLUS_3                            51                              61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20Q13.33) MUTATED       36     82     35
  AMP PEAK 22(20Q13.33) WILD-TYPE     34     96     15
D22V6, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            36                              34
  CLUS_2                            82                              96
  CLUS_3                            35                              15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(20Q13.33) MUTATED       39     39     38     24      6
  AMP PEAK 22(20Q13.33) WILD-TYPE     26     52     39     18      6
D22V7, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            39                              26
  CLUS_2                            39                              52
  CLUS_3                            38                              39
  CLUS_4                            24                              18
  CLUS_5                             6                               6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20Q13.33) MUTATED       32     43     21     50
  AMP PEAK 22(20Q13.33) WILD-TYPE     44     37     15     45
D22V8, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            32                              44
  CLUS_2                            43                              37
  CLUS_3                            21                              15
  CLUS_4                            50                              45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(20Q13.33) MUTATED       59     44     43
  AMP PEAK 22(20Q13.33) WILD-TYPE     42     54     45
D22V9, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            59                              42
  CLUS_2                            44                              54
  CLUS_3                            43                              45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(20Q13.33) MUTATED       55     50     25     16
  AMP PEAK 22(20Q13.33) WILD-TYPE     63     39     30      9
D22V10, multiclass
        clus
vv       AMP PEAK 22(20Q13.33) MUTATED AMP PEAK 22(20Q13.33) WILD-TYPE
  CLUS_1                            55                              63
  CLUS_2                            50                              39
  CLUS_3                            25                              30
  CLUS_4                            16                               9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(22Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(22Q13.2) MUTATED       44     20     32     31
  AMP PEAK 23(22Q13.2) WILD-TYPE     41     37     19     75
D23V1, multiclass
        clus
vv       AMP PEAK 23(22Q13.2) MUTATED AMP PEAK 23(22Q13.2) WILD-TYPE
  CLUS_1                           44                             41
  CLUS_2                           20                             37
  CLUS_3                           32                             19
  CLUS_4                           31                             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(22Q13.2) MUTATED       51     39     37
  AMP PEAK 23(22Q13.2) WILD-TYPE     61     72     39
D23V2, multiclass
        clus
vv       AMP PEAK 23(22Q13.2) MUTATED AMP PEAK 23(22Q13.2) WILD-TYPE
  CLUS_1                           51                             61
  CLUS_2                           39                             72
  CLUS_3                           37                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(22Q13.2) MUTATED       18     25     11     16
  AMP PEAK 23(22Q13.2) WILD-TYPE     29     33     15     22
D23V3, multiclass
        clus
vv       AMP PEAK 23(22Q13.2) MUTATED AMP PEAK 23(22Q13.2) WILD-TYPE
  CLUS_1                           18                             29
  CLUS_2                           25                             33
  CLUS_3                           11                             15
  CLUS_4                           16                             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(22Q13.2) MUTATED        9     27     14     20
  AMP PEAK 23(22Q13.2) WILD-TYPE     18     31     21     29
D23V4, multiclass
        clus
vv       AMP PEAK 23(22Q13.2) MUTATED AMP PEAK 23(22Q13.2) WILD-TYPE
  CLUS_1                            9                             18
  CLUS_2                           27                             31
  CLUS_3                           14                             21
  CLUS_4                           20                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(22Q13.2) MUTATED       45     32     50
  AMP PEAK 23(22Q13.2) WILD-TYPE     54     55     62
D23V5, multiclass
        clus
vv       AMP PEAK 23(22Q13.2) MUTATED AMP PEAK 23(22Q13.2) WILD-TYPE
  CLUS_1                           45                             54
  CLUS_2                           32                             55
  CLUS_3                           50                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(22Q13.2) MUTATED       32     68     27
  AMP PEAK 23(22Q13.2) WILD-TYPE     38    110     23
D23V6, multiclass
        clus
vv       AMP PEAK 23(22Q13.2) MUTATED AMP PEAK 23(22Q13.2) WILD-TYPE
  CLUS_1                           32                             38
  CLUS_2                           68                            110
  CLUS_3                           27                             23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(22Q13.2) MUTATED       31     36     28     21      6
  AMP PEAK 23(22Q13.2) WILD-TYPE     34     55     49     21      6
D23V7, multiclass
        clus
vv       AMP PEAK 23(22Q13.2) MUTATED AMP PEAK 23(22Q13.2) WILD-TYPE
  CLUS_1                           31                             34
  CLUS_2                           36                             55
  CLUS_3                           28                             49
  CLUS_4                           21                             21
  CLUS_5                            6                              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(22Q13.2) MUTATED       38     27     17     40
  AMP PEAK 23(22Q13.2) WILD-TYPE     38     53     19     55
D23V8, multiclass
        clus
vv       AMP PEAK 23(22Q13.2) MUTATED AMP PEAK 23(22Q13.2) WILD-TYPE
  CLUS_1                           38                             38
  CLUS_2                           27                             53
  CLUS_3                           17                             19
  CLUS_4                           40                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(22Q13.2) MUTATED       49     38     35
  AMP PEAK 23(22Q13.2) WILD-TYPE     52     60     53
D23V9, multiclass
        clus
vv       AMP PEAK 23(22Q13.2) MUTATED AMP PEAK 23(22Q13.2) WILD-TYPE
  CLUS_1                           49                             52
  CLUS_2                           38                             60
  CLUS_3                           35                             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(22Q13.2) MUTATED       55     32     23     12
  AMP PEAK 23(22Q13.2) WILD-TYPE     63     57     32     13
D23V10, multiclass
        clus
vv       AMP PEAK 23(22Q13.2) MUTATED AMP PEAK 23(22Q13.2) WILD-TYPE
  CLUS_1                           55                             63
  CLUS_2                           32                             57
  CLUS_3                           23                             32
  CLUS_4                           12                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = DEL PEAK  1(1P36.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED       27     13     12     18
  DEL PEAK  1(1P36.31) WILD-TYPE     58     44     39     88
D24V1, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           27                             58
  CLUS_2                           13                             44
  CLUS_3                           12                             39
  CLUS_4                           18                             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       20     16     34
  DEL PEAK  1(1P36.31) WILD-TYPE     92     95     42
D24V2, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           20                             92
  CLUS_2                           16                             95
  CLUS_3                           34                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED       11     17      8      7
  DEL PEAK  1(1P36.31) WILD-TYPE     36     41     18     31
D24V3, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           11                             36
  CLUS_2                           17                             41
  CLUS_3                            8                             18
  CLUS_4                            7                             31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED        7     14      5     17
  DEL PEAK  1(1P36.31) WILD-TYPE     20     44     30     32
D24V4, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            7                             20
  CLUS_2                           14                             44
  CLUS_3                            5                             30
  CLUS_4                           17                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       30     14     26
  DEL PEAK  1(1P36.31) WILD-TYPE     69     73     86
D24V5, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           30                             69
  CLUS_2                           14                             73
  CLUS_3                           26                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       24     30     16
  DEL PEAK  1(1P36.31) WILD-TYPE     46    148     34
D24V6, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           24                             46
  CLUS_2                           30                            148
  CLUS_3                           16                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.31) MUTATED        8     24     19     14      3
  DEL PEAK  1(1P36.31) WILD-TYPE     57     67     58     28      9
D24V7, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                            8                             57
  CLUS_2                           24                             67
  CLUS_3                           19                             58
  CLUS_4                           14                             28
  CLUS_5                            3                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED       19     12     12     25
  DEL PEAK  1(1P36.31) WILD-TYPE     57     68     24     70
D24V8, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           19                             57
  CLUS_2                           12                             68
  CLUS_3                           12                             24
  CLUS_4                           25                             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.31) MUTATED       23     26     19
  DEL PEAK  1(1P36.31) WILD-TYPE     78     72     69
D24V9, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           23                             78
  CLUS_2                           26                             72
  CLUS_3                           19                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.31) MUTATED       29     16     17      6
  DEL PEAK  1(1P36.31) WILD-TYPE     89     73     38     19
D24V10, multiclass
        clus
vv       DEL PEAK  1(1P36.31) MUTATED DEL PEAK  1(1P36.31) WILD-TYPE
  CLUS_1                           29                             89
  CLUS_2                           16                             73
  CLUS_3                           17                             38
  CLUS_4                            6                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = DEL PEAK  2(1P22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P22.1) MUTATED       23     14     23     16
  DEL PEAK  2(1P22.1) WILD-TYPE     62     43     28     90
D25V1, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          23                            62
  CLUS_2                          14                            43
  CLUS_3                          23                            28
  CLUS_4                          16                            90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P22.1) MUTATED       19     22     35
  DEL PEAK  2(1P22.1) WILD-TYPE     93     89     41
D25V2, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          19                            93
  CLUS_2                          22                            89
  CLUS_3                          35                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P22.1) MUTATED       12     15     10      9
  DEL PEAK  2(1P22.1) WILD-TYPE     35     43     16     29
D25V3, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          12                            35
  CLUS_2                          15                            43
  CLUS_3                          10                            16
  CLUS_4                           9                            29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P22.1) MUTATED        4     14     10     18
  DEL PEAK  2(1P22.1) WILD-TYPE     23     44     25     31
D25V4, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                           4                            23
  CLUS_2                          14                            44
  CLUS_3                          10                            25
  CLUS_4                          18                            31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P22.1) MUTATED       40      9     27
  DEL PEAK  2(1P22.1) WILD-TYPE     59     78     85
D25V5, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          40                            59
  CLUS_2                           9                            78
  CLUS_3                          27                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P22.1) MUTATED       18     34     24
  DEL PEAK  2(1P22.1) WILD-TYPE     52    144     26
D25V6, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          18                            52
  CLUS_2                          34                           144
  CLUS_3                          24                            26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P22.1) MUTATED       11     21     24     14      4
  DEL PEAK  2(1P22.1) WILD-TYPE     54     70     53     28      8
D25V7, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          11                            54
  CLUS_2                          21                            70
  CLUS_3                          24                            53
  CLUS_4                          14                            28
  CLUS_5                           4                             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P22.1) MUTATED       19     23     12     20
  DEL PEAK  2(1P22.1) WILD-TYPE     57     57     24     75
D25V8, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          19                            57
  CLUS_2                          23                            57
  CLUS_3                          12                            24
  CLUS_4                          20                            75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P22.1) MUTATED       28     21     25
  DEL PEAK  2(1P22.1) WILD-TYPE     73     77     63
D25V9, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          28                            73
  CLUS_2                          21                            77
  CLUS_3                          25                            63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P22.1) MUTATED       26     27     14      7
  DEL PEAK  2(1P22.1) WILD-TYPE     92     62     41     18
D25V10, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          26                            92
  CLUS_2                          27                            62
  CLUS_3                          14                            41
  CLUS_4                           7                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = DEL PEAK  3(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q37.3) MUTATED       23     16     10     25
  DEL PEAK  3(2Q37.3) WILD-TYPE     62     41     41     81
D26V1, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          23                            62
  CLUS_2                          16                            41
  CLUS_3                          10                            41
  CLUS_4                          25                            81
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q37.3) MUTATED       32     19     23
  DEL PEAK  3(2Q37.3) WILD-TYPE     80     92     53
D26V2, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          32                            80
  CLUS_2                          19                            92
  CLUS_3                          23                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q37.3) MUTATED       10     21      9      6
  DEL PEAK  3(2Q37.3) WILD-TYPE     37     37     17     32
D26V3, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          10                            37
  CLUS_2                          21                            37
  CLUS_3                           9                            17
  CLUS_4                           6                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q37.3) MUTATED        4     11      8     23
  DEL PEAK  3(2Q37.3) WILD-TYPE     23     47     27     26
D26V4, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                           4                            23
  CLUS_2                          11                            47
  CLUS_3                           8                            27
  CLUS_4                          23                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q37.3) MUTATED       17     16     40
  DEL PEAK  3(2Q37.3) WILD-TYPE     82     71     72
D26V5, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          17                            82
  CLUS_2                          16                            71
  CLUS_3                          40                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q37.3) MUTATED       24     41      8
  DEL PEAK  3(2Q37.3) WILD-TYPE     46    137     42
D26V6, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          24                            46
  CLUS_2                          41                           137
  CLUS_3                           8                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2Q37.3) MUTATED       13     34     14     11      0
  DEL PEAK  3(2Q37.3) WILD-TYPE     52     57     63     31     12
D26V7, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          13                            52
  CLUS_2                          34                            57
  CLUS_3                          14                            63
  CLUS_4                          11                            31
  CLUS_5                           0                            12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q37.3) MUTATED       19     13      9     31
  DEL PEAK  3(2Q37.3) WILD-TYPE     57     67     27     64
D26V8, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          19                            57
  CLUS_2                          13                            67
  CLUS_3                           9                            27
  CLUS_4                          31                            64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2Q37.3) MUTATED       25     30     17
  DEL PEAK  3(2Q37.3) WILD-TYPE     76     68     71
D26V9, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          25                            76
  CLUS_2                          30                            68
  CLUS_3                          17                            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2Q37.3) MUTATED       33     14     19      6
  DEL PEAK  3(2Q37.3) WILD-TYPE     85     75     36     19
D26V10, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          33                            85
  CLUS_2                          14                            75
  CLUS_3                          19                            36
  CLUS_4                           6                            19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = DEL PEAK  4(3P24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P24.3) MUTATED       13     13     13     21
  DEL PEAK  4(3P24.3) WILD-TYPE     72     44     38     85
D27V1, multiclass
        clus
vv       DEL PEAK  4(3P24.3) MUTATED DEL PEAK  4(3P24.3) WILD-TYPE
  CLUS_1                          13                            72
  CLUS_2                          13                            44
  CLUS_3                          13                            38
  CLUS_4                          21                            85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P24.3) MUTATED       18     26     16
  DEL PEAK  4(3P24.3) WILD-TYPE     94     85     60
D27V2, multiclass
        clus
vv       DEL PEAK  4(3P24.3) MUTATED DEL PEAK  4(3P24.3) WILD-TYPE
  CLUS_1                          18                            94
  CLUS_2                          26                            85
  CLUS_3                          16                            60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P24.3) MUTATED        7      9      8      7
  DEL PEAK  4(3P24.3) WILD-TYPE     40     49     18     31
D27V3, multiclass
        clus
vv       DEL PEAK  4(3P24.3) MUTATED DEL PEAK  4(3P24.3) WILD-TYPE
  CLUS_1                           7                            40
  CLUS_2                           9                            49
  CLUS_3                           8                            18
  CLUS_4                           7                            31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P24.3) MUTATED        3      9      8     11
  DEL PEAK  4(3P24.3) WILD-TYPE     24     49     27     38
D27V4, multiclass
        clus
vv       DEL PEAK  4(3P24.3) MUTATED DEL PEAK  4(3P24.3) WILD-TYPE
  CLUS_1                           3                            24
  CLUS_2                           9                            49
  CLUS_3                           8                            27
  CLUS_4                          11                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P24.3) MUTATED       26     15     19
  DEL PEAK  4(3P24.3) WILD-TYPE     73     72     93
D27V5, multiclass
        clus
vv       DEL PEAK  4(3P24.3) MUTATED DEL PEAK  4(3P24.3) WILD-TYPE
  CLUS_1                          26                            73
  CLUS_2                          15                            72
  CLUS_3                          19                            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P24.3) MUTATED       11     36     13
  DEL PEAK  4(3P24.3) WILD-TYPE     59    142     37
D27V6, multiclass
        clus
vv       DEL PEAK  4(3P24.3) MUTATED DEL PEAK  4(3P24.3) WILD-TYPE
  CLUS_1                          11                            59
  CLUS_2                          36                           142
  CLUS_3                          13                            37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(3P24.3) MUTATED       13     16     21      5      1
  DEL PEAK  4(3P24.3) WILD-TYPE     52     75     56     37     11
D27V7, multiclass
        clus
vv       DEL PEAK  4(3P24.3) MUTATED DEL PEAK  4(3P24.3) WILD-TYPE
  CLUS_1                          13                            52
  CLUS_2                          16                            75
  CLUS_3                          21                            56
  CLUS_4                           5                            37
  CLUS_5                           1                            11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P24.3) MUTATED       16     19      4     17
  DEL PEAK  4(3P24.3) WILD-TYPE     60     61     32     78
D27V8, multiclass
        clus
vv       DEL PEAK  4(3P24.3) MUTATED DEL PEAK  4(3P24.3) WILD-TYPE
  CLUS_1                          16                            60
  CLUS_2                          19                            61
  CLUS_3                           4                            32
  CLUS_4                          17                            78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(3P24.3) MUTATED       16     16     24
  DEL PEAK  4(3P24.3) WILD-TYPE     85     82     64
D27V9, multiclass
        clus
vv       DEL PEAK  4(3P24.3) MUTATED DEL PEAK  4(3P24.3) WILD-TYPE
  CLUS_1                          16                            85
  CLUS_2                          16                            82
  CLUS_3                          24                            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(3P24.3) MUTATED       17     21     15      3
  DEL PEAK  4(3P24.3) WILD-TYPE    101     68     40     22
D27V10, multiclass
        clus
vv       DEL PEAK  4(3P24.3) MUTATED DEL PEAK  4(3P24.3) WILD-TYPE
  CLUS_1                          17                           101
  CLUS_2                          21                            68
  CLUS_3                          15                            40
  CLUS_4                           3                            22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = DEL PEAK  5(3Q23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3Q23) MUTATED       13     15      7     13
  DEL PEAK  5(3Q23) WILD-TYPE     72     42     44     93
D28V1, multiclass
        clus
vv       DEL PEAK  5(3Q23) MUTATED DEL PEAK  5(3Q23) WILD-TYPE
  CLUS_1                        13                          72
  CLUS_2                        15                          42
  CLUS_3                         7                          44
  CLUS_4                        13                          93
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3Q23) MUTATED       24     11     13
  DEL PEAK  5(3Q23) WILD-TYPE     88    100     63
D28V2, multiclass
        clus
vv       DEL PEAK  5(3Q23) MUTATED DEL PEAK  5(3Q23) WILD-TYPE
  CLUS_1                        24                          88
  CLUS_2                        11                         100
  CLUS_3                        13                          63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3Q23) MUTATED        5     12      2      7
  DEL PEAK  5(3Q23) WILD-TYPE     42     46     24     31
D28V3, multiclass
        clus
vv       DEL PEAK  5(3Q23) MUTATED DEL PEAK  5(3Q23) WILD-TYPE
  CLUS_1                         5                          42
  CLUS_2                        12                          46
  CLUS_3                         2                          24
  CLUS_4                         7                          31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3Q23) MUTATED        2      9      8      7
  DEL PEAK  5(3Q23) WILD-TYPE     25     49     27     42
D28V4, multiclass
        clus
vv       DEL PEAK  5(3Q23) MUTATED DEL PEAK  5(3Q23) WILD-TYPE
  CLUS_1                         2                          25
  CLUS_2                         9                          49
  CLUS_3                         8                          27
  CLUS_4                         7                          42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3Q23) MUTATED       18      9     21
  DEL PEAK  5(3Q23) WILD-TYPE     81     78     91
D28V5, multiclass
        clus
vv       DEL PEAK  5(3Q23) MUTATED DEL PEAK  5(3Q23) WILD-TYPE
  CLUS_1                        18                          81
  CLUS_2                         9                          78
  CLUS_3                        21                          91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3Q23) MUTATED       14     26      8
  DEL PEAK  5(3Q23) WILD-TYPE     56    152     42
D28V6, multiclass
        clus
vv       DEL PEAK  5(3Q23) MUTATED DEL PEAK  5(3Q23) WILD-TYPE
  CLUS_1                        14                          56
  CLUS_2                        26                         152
  CLUS_3                         8                          42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(3Q23) MUTATED       12     17     14      4      0
  DEL PEAK  5(3Q23) WILD-TYPE     53     74     63     38     12
D28V7, multiclass
        clus
vv       DEL PEAK  5(3Q23) MUTATED DEL PEAK  5(3Q23) WILD-TYPE
  CLUS_1                        12                          53
  CLUS_2                        17                          74
  CLUS_3                        14                          63
  CLUS_4                         4                          38
  CLUS_5                         0                          12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3Q23) MUTATED       10     13      4     20
  DEL PEAK  5(3Q23) WILD-TYPE     66     67     32     75
D28V8, multiclass
        clus
vv       DEL PEAK  5(3Q23) MUTATED DEL PEAK  5(3Q23) WILD-TYPE
  CLUS_1                        10                          66
  CLUS_2                        13                          67
  CLUS_3                         4                          32
  CLUS_4                        20                          75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(3Q23) MUTATED       14     16     17
  DEL PEAK  5(3Q23) WILD-TYPE     87     82     71
D28V9, multiclass
        clus
vv       DEL PEAK  5(3Q23) MUTATED DEL PEAK  5(3Q23) WILD-TYPE
  CLUS_1                        14                          87
  CLUS_2                        16                          82
  CLUS_3                        17                          71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(3Q23) MUTATED       17     14     13      3
  DEL PEAK  5(3Q23) WILD-TYPE    101     75     42     22
D28V10, multiclass
        clus
vv       DEL PEAK  5(3Q23) MUTATED DEL PEAK  5(3Q23) WILD-TYPE
  CLUS_1                        17                         101
  CLUS_2                        14                          75
  CLUS_3                        13                          42
  CLUS_4                         3                          22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = DEL PEAK  6(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED       20     15     24     26
  DEL PEAK  6(4Q34.3) WILD-TYPE     65     42     27     80
D29V1, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          20                            65
  CLUS_2                          15                            42
  CLUS_3                          24                            27
  CLUS_4                          26                            80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q34.3) MUTATED       22     33     30
  DEL PEAK  6(4Q34.3) WILD-TYPE     90     78     46
D29V2, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          22                            90
  CLUS_2                          33                            78
  CLUS_3                          30                            46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED       17     17      8      8
  DEL PEAK  6(4Q34.3) WILD-TYPE     30     41     18     30
D29V3, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          17                            30
  CLUS_2                          17                            41
  CLUS_3                           8                            18
  CLUS_4                           8                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED        5     19     10     16
  DEL PEAK  6(4Q34.3) WILD-TYPE     22     39     25     33
D29V4, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                           5                            22
  CLUS_2                          19                            39
  CLUS_3                          10                            25
  CLUS_4                          16                            33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q34.3) MUTATED       36     18     30
  DEL PEAK  6(4Q34.3) WILD-TYPE     63     69     82
D29V5, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          36                            63
  CLUS_2                          18                            69
  CLUS_3                          30                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q34.3) MUTATED       17     44     23
  DEL PEAK  6(4Q34.3) WILD-TYPE     53    134     27
D29V6, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          17                            53
  CLUS_2                          44                           134
  CLUS_3                          23                            27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(4Q34.3) MUTATED       19     21     27     13      3
  DEL PEAK  6(4Q34.3) WILD-TYPE     46     70     50     29      9
D29V7, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          19                            46
  CLUS_2                          21                            70
  CLUS_3                          27                            50
  CLUS_4                          13                            29
  CLUS_5                           3                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED       19     32     15     17
  DEL PEAK  6(4Q34.3) WILD-TYPE     57     48     21     78
D29V8, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          19                            57
  CLUS_2                          32                            48
  CLUS_3                          15                            21
  CLUS_4                          17                            78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(4Q34.3) MUTATED       32     22     29
  DEL PEAK  6(4Q34.3) WILD-TYPE     69     76     59
D29V9, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          32                            69
  CLUS_2                          22                            76
  CLUS_3                          29                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(4Q34.3) MUTATED       26     36     11     10
  DEL PEAK  6(4Q34.3) WILD-TYPE     92     53     44     15
D29V10, multiclass
        clus
vv       DEL PEAK  6(4Q34.3) MUTATED DEL PEAK  6(4Q34.3) WILD-TYPE
  CLUS_1                          26                            92
  CLUS_2                          36                            53
  CLUS_3                          11                            44
  CLUS_4                          10                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = DEL PEAK  7(5P15.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5P15.31) MUTATED       17     11     13     20
  DEL PEAK  7(5P15.31) WILD-TYPE     68     46     38     86
D30V1, multiclass
        clus
vv       DEL PEAK  7(5P15.31) MUTATED DEL PEAK  7(5P15.31) WILD-TYPE
  CLUS_1                           17                             68
  CLUS_2                           11                             46
  CLUS_3                           13                             38
  CLUS_4                           20                             86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5P15.31) MUTATED       27     18     16
  DEL PEAK  7(5P15.31) WILD-TYPE     85     93     60
D30V2, multiclass
        clus
vv       DEL PEAK  7(5P15.31) MUTATED DEL PEAK  7(5P15.31) WILD-TYPE
  CLUS_1                           27                             85
  CLUS_2                           18                             93
  CLUS_3                           16                             60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5P15.31) MUTATED        8     14      6      5
  DEL PEAK  7(5P15.31) WILD-TYPE     39     44     20     33
D30V3, multiclass
        clus
vv       DEL PEAK  7(5P15.31) MUTATED DEL PEAK  7(5P15.31) WILD-TYPE
  CLUS_1                            8                             39
  CLUS_2                           14                             44
  CLUS_3                            6                             20
  CLUS_4                            5                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5P15.31) MUTATED        5     14      4     10
  DEL PEAK  7(5P15.31) WILD-TYPE     22     44     31     39
D30V4, multiclass
        clus
vv       DEL PEAK  7(5P15.31) MUTATED DEL PEAK  7(5P15.31) WILD-TYPE
  CLUS_1                            5                             22
  CLUS_2                           14                             44
  CLUS_3                            4                             31
  CLUS_4                           10                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5P15.31) MUTATED       18     17     26
  DEL PEAK  7(5P15.31) WILD-TYPE     81     70     86
D30V5, multiclass
        clus
vv       DEL PEAK  7(5P15.31) MUTATED DEL PEAK  7(5P15.31) WILD-TYPE
  CLUS_1                           18                             81
  CLUS_2                           17                             70
  CLUS_3                           26                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5P15.31) MUTATED       16     37      8
  DEL PEAK  7(5P15.31) WILD-TYPE     54    141     42
D30V6, multiclass
        clus
vv       DEL PEAK  7(5P15.31) MUTATED DEL PEAK  7(5P15.31) WILD-TYPE
  CLUS_1                           16                             54
  CLUS_2                           37                            141
  CLUS_3                            8                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(5P15.31) MUTATED       13     20     15      8      2
  DEL PEAK  7(5P15.31) WILD-TYPE     52     71     62     34     10
D30V7, multiclass
        clus
vv       DEL PEAK  7(5P15.31) MUTATED DEL PEAK  7(5P15.31) WILD-TYPE
  CLUS_1                           13                             52
  CLUS_2                           20                             71
  CLUS_3                           15                             62
  CLUS_4                            8                             34
  CLUS_5                            2                             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5P15.31) MUTATED       17     12      8     21
  DEL PEAK  7(5P15.31) WILD-TYPE     59     68     28     74
D30V8, multiclass
        clus
vv       DEL PEAK  7(5P15.31) MUTATED DEL PEAK  7(5P15.31) WILD-TYPE
  CLUS_1                           17                             59
  CLUS_2                           12                             68
  CLUS_3                            8                             28
  CLUS_4                           21                             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(5P15.31) MUTATED       20     22     16
  DEL PEAK  7(5P15.31) WILD-TYPE     81     76     72
D30V9, multiclass
        clus
vv       DEL PEAK  7(5P15.31) MUTATED DEL PEAK  7(5P15.31) WILD-TYPE
  CLUS_1                           20                             81
  CLUS_2                           22                             76
  CLUS_3                           16                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(5P15.31) MUTATED       26     13     13      6
  DEL PEAK  7(5P15.31) WILD-TYPE     92     76     42     19
D30V10, multiclass
        clus
vv       DEL PEAK  7(5P15.31) MUTATED DEL PEAK  7(5P15.31) WILD-TYPE
  CLUS_1                           26                             92
  CLUS_2                           13                             76
  CLUS_3                           13                             42
  CLUS_4                            6                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = DEL PEAK  8(5Q11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5Q11.2) MUTATED       22     11     25     22
  DEL PEAK  8(5Q11.2) WILD-TYPE     63     46     26     84
D31V1, multiclass
        clus
vv       DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE
  CLUS_1                          22                            63
  CLUS_2                          11                            46
  CLUS_3                          25                            26
  CLUS_4                          22                            84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q11.2) MUTATED       37     25     18
  DEL PEAK  8(5Q11.2) WILD-TYPE     75     86     58
D31V2, multiclass
        clus
vv       DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE
  CLUS_1                          37                            75
  CLUS_2                          25                            86
  CLUS_3                          18                            58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5Q11.2) MUTATED       11     16     10     10
  DEL PEAK  8(5Q11.2) WILD-TYPE     36     42     16     28
D31V3, multiclass
        clus
vv       DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE
  CLUS_1                          11                            36
  CLUS_2                          16                            42
  CLUS_3                          10                            16
  CLUS_4                          10                            28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5Q11.2) MUTATED        7     15      6     19
  DEL PEAK  8(5Q11.2) WILD-TYPE     20     43     29     30
D31V4, multiclass
        clus
vv       DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE
  CLUS_1                           7                            20
  CLUS_2                          15                            43
  CLUS_3                           6                            29
  CLUS_4                          19                            30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q11.2) MUTATED       29     19     32
  DEL PEAK  8(5Q11.2) WILD-TYPE     70     68     80
D31V5, multiclass
        clus
vv       DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE
  CLUS_1                          29                            70
  CLUS_2                          19                            68
  CLUS_3                          32                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q11.2) MUTATED       20     41     19
  DEL PEAK  8(5Q11.2) WILD-TYPE     50    137     31
D31V6, multiclass
        clus
vv       DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE
  CLUS_1                          20                            50
  CLUS_2                          41                           137
  CLUS_3                          19                            31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(5Q11.2) MUTATED       15     23     21     13      4
  DEL PEAK  8(5Q11.2) WILD-TYPE     50     68     56     29      8
D31V7, multiclass
        clus
vv       DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE
  CLUS_1                          15                            50
  CLUS_2                          23                            68
  CLUS_3                          21                            56
  CLUS_4                          13                            29
  CLUS_5                           4                             8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5Q11.2) MUTATED       17     18     13     28
  DEL PEAK  8(5Q11.2) WILD-TYPE     59     62     23     67
D31V8, multiclass
        clus
vv       DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE
  CLUS_1                          17                            59
  CLUS_2                          18                            62
  CLUS_3                          13                            23
  CLUS_4                          28                            67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(5Q11.2) MUTATED       29     27     20
  DEL PEAK  8(5Q11.2) WILD-TYPE     72     71     68
D31V9, multiclass
        clus
vv       DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE
  CLUS_1                          29                            72
  CLUS_2                          27                            71
  CLUS_3                          20                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(5Q11.2) MUTATED       31     20     16      9
  DEL PEAK  8(5Q11.2) WILD-TYPE     87     69     39     16
D31V10, multiclass
        clus
vv       DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE
  CLUS_1                          31                            87
  CLUS_2                          20                            69
  CLUS_3                          16                            39
  CLUS_4                           9                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = DEL PEAK  9(5Q31.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q31.3) MUTATED       28     15     32     36
  DEL PEAK  9(5Q31.3) WILD-TYPE     57     42     19     70
D32V1, multiclass
        clus
vv       DEL PEAK  9(5Q31.3) MUTATED DEL PEAK  9(5Q31.3) WILD-TYPE
  CLUS_1                          28                            57
  CLUS_2                          15                            42
  CLUS_3                          32                            19
  CLUS_4                          36                            70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q31.3) MUTATED       56     36     19
  DEL PEAK  9(5Q31.3) WILD-TYPE     56     75     57
D32V2, multiclass
        clus
vv       DEL PEAK  9(5Q31.3) MUTATED DEL PEAK  9(5Q31.3) WILD-TYPE
  CLUS_1                          56                            56
  CLUS_2                          36                            75
  CLUS_3                          19                            57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q31.3) MUTATED       15     20     12     12
  DEL PEAK  9(5Q31.3) WILD-TYPE     32     38     14     26
D32V3, multiclass
        clus
vv       DEL PEAK  9(5Q31.3) MUTATED DEL PEAK  9(5Q31.3) WILD-TYPE
  CLUS_1                          15                            32
  CLUS_2                          20                            38
  CLUS_3                          12                            14
  CLUS_4                          12                            26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q31.3) MUTATED        9     21      8     21
  DEL PEAK  9(5Q31.3) WILD-TYPE     18     37     27     28
D32V4, multiclass
        clus
vv       DEL PEAK  9(5Q31.3) MUTATED DEL PEAK  9(5Q31.3) WILD-TYPE
  CLUS_1                           9                            18
  CLUS_2                          21                            37
  CLUS_3                           8                            27
  CLUS_4                          21                            28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q31.3) MUTATED       40     27     43
  DEL PEAK  9(5Q31.3) WILD-TYPE     59     60     69
D32V5, multiclass
        clus
vv       DEL PEAK  9(5Q31.3) MUTATED DEL PEAK  9(5Q31.3) WILD-TYPE
  CLUS_1                          40                            59
  CLUS_2                          27                            60
  CLUS_3                          43                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q31.3) MUTATED       26     59     25
  DEL PEAK  9(5Q31.3) WILD-TYPE     44    119     25
D32V6, multiclass
        clus
vv       DEL PEAK  9(5Q31.3) MUTATED DEL PEAK  9(5Q31.3) WILD-TYPE
  CLUS_1                          26                            44
  CLUS_2                          59                           119
  CLUS_3                          25                            25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(5Q31.3) MUTATED       22     36     28     17      5
  DEL PEAK  9(5Q31.3) WILD-TYPE     43     55     49     25      7
D32V7, multiclass
        clus
vv       DEL PEAK  9(5Q31.3) MUTATED DEL PEAK  9(5Q31.3) WILD-TYPE
  CLUS_1                          22                            43
  CLUS_2                          36                            55
  CLUS_3                          28                            49
  CLUS_4                          17                            25
  CLUS_5                           5                             7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q31.3) MUTATED       24     28     17     39
  DEL PEAK  9(5Q31.3) WILD-TYPE     52     52     19     56
D32V8, multiclass
        clus
vv       DEL PEAK  9(5Q31.3) MUTATED DEL PEAK  9(5Q31.3) WILD-TYPE
  CLUS_1                          24                            52
  CLUS_2                          28                            52
  CLUS_3                          17                            19
  CLUS_4                          39                            56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(5Q31.3) MUTATED       39     40     29
  DEL PEAK  9(5Q31.3) WILD-TYPE     62     58     59
D32V9, multiclass
        clus
vv       DEL PEAK  9(5Q31.3) MUTATED DEL PEAK  9(5Q31.3) WILD-TYPE
  CLUS_1                          39                            62
  CLUS_2                          40                            58
  CLUS_3                          29                            59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(5Q31.3) MUTATED       43     30     22     13
  DEL PEAK  9(5Q31.3) WILD-TYPE     75     59     33     12
D32V10, multiclass
        clus
vv       DEL PEAK  9(5Q31.3) MUTATED DEL PEAK  9(5Q31.3) WILD-TYPE
  CLUS_1                          43                            75
  CLUS_2                          30                            59
  CLUS_3                          22                            33
  CLUS_4                          13                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = DEL PEAK 10(6Q22.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6Q22.31) MUTATED       55     46     40     38
  DEL PEAK 10(6Q22.31) WILD-TYPE     30     11     11     68
D33V1, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                           55                             30
  CLUS_2                           46                             11
  CLUS_3                           40                             11
  CLUS_4                           38                             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q22.31) MUTATED       77     56     46
  DEL PEAK 10(6Q22.31) WILD-TYPE     35     55     30
D33V2, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                           77                             35
  CLUS_2                           56                             55
  CLUS_3                           46                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6Q22.31) MUTATED       27     36     16     22
  DEL PEAK 10(6Q22.31) WILD-TYPE     20     22     10     16
D33V3, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                           27                             20
  CLUS_2                           36                             22
  CLUS_3                           16                             10
  CLUS_4                           22                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6Q22.31) MUTATED       18     37     17     29
  DEL PEAK 10(6Q22.31) WILD-TYPE      9     21     18     20
D33V4, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                           18                              9
  CLUS_2                           37                             21
  CLUS_3                           17                             18
  CLUS_4                           29                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q22.31) MUTATED       70     41     68
  DEL PEAK 10(6Q22.31) WILD-TYPE     29     46     44
D33V5, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                           70                             29
  CLUS_2                           41                             46
  CLUS_3                           68                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q22.31) MUTATED       44    100     35
  DEL PEAK 10(6Q22.31) WILD-TYPE     26     78     15
D33V6, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                           44                             26
  CLUS_2                          100                             78
  CLUS_3                           35                             15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(6Q22.31) MUTATED       35     57     46     28      9
  DEL PEAK 10(6Q22.31) WILD-TYPE     30     34     31     14      3
D33V7, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                           35                             30
  CLUS_2                           57                             34
  CLUS_3                           46                             31
  CLUS_4                           28                             14
  CLUS_5                            9                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6Q22.31) MUTATED       45     45     25     60
  DEL PEAK 10(6Q22.31) WILD-TYPE     31     35     11     35
D33V8, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                           45                             31
  CLUS_2                           45                             35
  CLUS_3                           25                             11
  CLUS_4                           60                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(6Q22.31) MUTATED       64     57     54
  DEL PEAK 10(6Q22.31) WILD-TYPE     37     41     34
D33V9, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                           64                             37
  CLUS_2                           57                             41
  CLUS_3                           54                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(6Q22.31) MUTATED       66     54     37     18
  DEL PEAK 10(6Q22.31) WILD-TYPE     52     35     18      7
D33V10, multiclass
        clus
vv       DEL PEAK 10(6Q22.31) MUTATED DEL PEAK 10(6Q22.31) WILD-TYPE
  CLUS_1                           66                             52
  CLUS_2                           54                             35
  CLUS_3                           37                             18
  CLUS_4                           18                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = DEL PEAK 11(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q26) MUTATED       60     46     40     38
  DEL PEAK 11(6Q26) WILD-TYPE     25     11     11     68
D34V1, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        60                          25
  CLUS_2                        46                          11
  CLUS_3                        40                          11
  CLUS_4                        38                          68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q26) MUTATED       77     57     50
  DEL PEAK 11(6Q26) WILD-TYPE     35     54     26
D34V2, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        77                          35
  CLUS_2                        57                          54
  CLUS_3                        50                          26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q26) MUTATED       27     38     17     23
  DEL PEAK 11(6Q26) WILD-TYPE     20     20      9     15
D34V3, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        27                          20
  CLUS_2                        38                          20
  CLUS_3                        17                           9
  CLUS_4                        23                          15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q26) MUTATED       17     38     18     32
  DEL PEAK 11(6Q26) WILD-TYPE     10     20     17     17
D34V4, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        17                          10
  CLUS_2                        38                          20
  CLUS_3                        18                          17
  CLUS_4                        32                          17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q26) MUTATED       72     41     71
  DEL PEAK 11(6Q26) WILD-TYPE     27     46     41
D34V5, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        72                          27
  CLUS_2                        41                          46
  CLUS_3                        71                          41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q26) MUTATED       48    100     36
  DEL PEAK 11(6Q26) WILD-TYPE     22     78     14
D34V6, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        48                          22
  CLUS_2                       100                          78
  CLUS_3                        36                          14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(6Q26) MUTATED       34     61     47     28     10
  DEL PEAK 11(6Q26) WILD-TYPE     31     30     30     14      2
D34V7, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        34                          31
  CLUS_2                        61                          30
  CLUS_3                        47                          30
  CLUS_4                        28                          14
  CLUS_5                        10                           2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q26) MUTATED       44     47     24     65
  DEL PEAK 11(6Q26) WILD-TYPE     32     33     12     30
D34V8, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        44                          32
  CLUS_2                        47                          33
  CLUS_3                        24                          12
  CLUS_4                        65                          30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(6Q26) MUTATED       64     63     53
  DEL PEAK 11(6Q26) WILD-TYPE     37     35     35
D34V9, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        64                          37
  CLUS_2                        63                          35
  CLUS_3                        53                          35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(6Q26) MUTATED       69     55     39     17
  DEL PEAK 11(6Q26) WILD-TYPE     49     34     16      8
D34V10, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        69                          49
  CLUS_2                        55                          34
  CLUS_3                        39                          16
  CLUS_4                        17                           8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = DEL PEAK 12(8P23.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(8P23.3) MUTATED       25     17     10     17
  DEL PEAK 12(8P23.3) WILD-TYPE     60     40     41     89
D35V1, multiclass
        clus
vv       DEL PEAK 12(8P23.3) MUTATED DEL PEAK 12(8P23.3) WILD-TYPE
  CLUS_1                          25                            60
  CLUS_2                          17                            40
  CLUS_3                          10                            41
  CLUS_4                          17                            89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8P23.3) MUTATED       29     19     21
  DEL PEAK 12(8P23.3) WILD-TYPE     83     92     55
D35V2, multiclass
        clus
vv       DEL PEAK 12(8P23.3) MUTATED DEL PEAK 12(8P23.3) WILD-TYPE
  CLUS_1                          29                            83
  CLUS_2                          19                            92
  CLUS_3                          21                            55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(8P23.3) MUTATED       10     20      9      7
  DEL PEAK 12(8P23.3) WILD-TYPE     37     38     17     31
D35V3, multiclass
        clus
vv       DEL PEAK 12(8P23.3) MUTATED DEL PEAK 12(8P23.3) WILD-TYPE
  CLUS_1                          10                            37
  CLUS_2                          20                            38
  CLUS_3                           9                            17
  CLUS_4                           7                            31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(8P23.3) MUTATED        6     18      5     17
  DEL PEAK 12(8P23.3) WILD-TYPE     21     40     30     32
D35V4, multiclass
        clus
vv       DEL PEAK 12(8P23.3) MUTATED DEL PEAK 12(8P23.3) WILD-TYPE
  CLUS_1                           6                            21
  CLUS_2                          18                            40
  CLUS_3                           5                            30
  CLUS_4                          17                            32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8P23.3) MUTATED       28     13     28
  DEL PEAK 12(8P23.3) WILD-TYPE     71     74     84
D35V5, multiclass
        clus
vv       DEL PEAK 12(8P23.3) MUTATED DEL PEAK 12(8P23.3) WILD-TYPE
  CLUS_1                          28                            71
  CLUS_2                          13                            74
  CLUS_3                          28                            84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8P23.3) MUTATED       18     39     12
  DEL PEAK 12(8P23.3) WILD-TYPE     52    139     38
D35V6, multiclass
        clus
vv       DEL PEAK 12(8P23.3) MUTATED DEL PEAK 12(8P23.3) WILD-TYPE
  CLUS_1                          18                            52
  CLUS_2                          39                           139
  CLUS_3                          12                            38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(8P23.3) MUTATED       17     26     13      9      3
  DEL PEAK 12(8P23.3) WILD-TYPE     48     65     64     33      9
D35V7, multiclass
        clus
vv       DEL PEAK 12(8P23.3) MUTATED DEL PEAK 12(8P23.3) WILD-TYPE
  CLUS_1                          17                            48
  CLUS_2                          26                            65
  CLUS_3                          13                            64
  CLUS_4                           9                            33
  CLUS_5                           3                             9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(8P23.3) MUTATED       23     14      8     23
  DEL PEAK 12(8P23.3) WILD-TYPE     53     66     28     72
D35V8, multiclass
        clus
vv       DEL PEAK 12(8P23.3) MUTATED DEL PEAK 12(8P23.3) WILD-TYPE
  CLUS_1                          23                            53
  CLUS_2                          14                            66
  CLUS_3                           8                            28
  CLUS_4                          23                            72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(8P23.3) MUTATED       27     26     15
  DEL PEAK 12(8P23.3) WILD-TYPE     74     72     73
D35V9, multiclass
        clus
vv       DEL PEAK 12(8P23.3) MUTATED DEL PEAK 12(8P23.3) WILD-TYPE
  CLUS_1                          27                            74
  CLUS_2                          26                            72
  CLUS_3                          15                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(8P23.3) MUTATED       29     18     14      7
  DEL PEAK 12(8P23.3) WILD-TYPE     89     71     41     18
D35V10, multiclass
        clus
vv       DEL PEAK 12(8P23.3) MUTATED DEL PEAK 12(8P23.3) WILD-TYPE
  CLUS_1                          29                            89
  CLUS_2                          18                            71
  CLUS_3                          14                            41
  CLUS_4                           7                            18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DEL PEAK 13(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(9P23) MUTATED       59     47     41     59
  DEL PEAK 13(9P23) WILD-TYPE     26     10     10     47
D36V1, multiclass
        clus
vv       DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE
  CLUS_1                        59                          26
  CLUS_2                        47                          10
  CLUS_3                        41                          10
  CLUS_4                        59                          47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9P23) MUTATED       86     66     54
  DEL PEAK 13(9P23) WILD-TYPE     26     45     22
D36V2, multiclass
        clus
vv       DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE
  CLUS_1                        86                          26
  CLUS_2                        66                          45
  CLUS_3                        54                          22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(9P23) MUTATED       31     37     21     27
  DEL PEAK 13(9P23) WILD-TYPE     16     21      5     11
D36V3, multiclass
        clus
vv       DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE
  CLUS_1                        31                          16
  CLUS_2                        37                          21
  CLUS_3                        21                           5
  CLUS_4                        27                          11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(9P23) MUTATED       16     39     25     36
  DEL PEAK 13(9P23) WILD-TYPE     11     19     10     13
D36V4, multiclass
        clus
vv       DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE
  CLUS_1                        16                          11
  CLUS_2                        39                          19
  CLUS_3                        25                          10
  CLUS_4                        36                          13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9P23) MUTATED       79     50     76
  DEL PEAK 13(9P23) WILD-TYPE     20     37     36
D36V5, multiclass
        clus
vv       DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE
  CLUS_1                        79                          20
  CLUS_2                        50                          37
  CLUS_3                        76                          36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9P23) MUTATED       51    115     39
  DEL PEAK 13(9P23) WILD-TYPE     19     63     11
D36V6, multiclass
        clus
vv       DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE
  CLUS_1                        51                          19
  CLUS_2                       115                          63
  CLUS_3                        39                          11
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(9P23) MUTATED       36     66     57     25     11
  DEL PEAK 13(9P23) WILD-TYPE     29     25     20     17      1
D36V7, multiclass
        clus
vv       DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE
  CLUS_1                        36                          29
  CLUS_2                        66                          25
  CLUS_3                        57                          20
  CLUS_4                        25                          17
  CLUS_5                        11                           1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(9P23) MUTATED       51     51     20     73
  DEL PEAK 13(9P23) WILD-TYPE     25     29     16     22
D36V8, multiclass
        clus
vv       DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE
  CLUS_1                        51                          25
  CLUS_2                        51                          29
  CLUS_3                        20                          16
  CLUS_4                        73                          22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(9P23) MUTATED       65     67     63
  DEL PEAK 13(9P23) WILD-TYPE     36     31     25
D36V9, multiclass
        clus
vv       DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE
  CLUS_1                        65                          36
  CLUS_2                        67                          31
  CLUS_3                        63                          25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(9P23) MUTATED       79     57     45     14
  DEL PEAK 13(9P23) WILD-TYPE     39     32     10     11
D36V10, multiclass
        clus
vv       DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE
  CLUS_1                        79                          39
  CLUS_2                        57                          32
  CLUS_3                        45                          10
  CLUS_4                        14                          11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = DEL PEAK 14(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9P21.3) MUTATED       65     55     44     65
  DEL PEAK 14(9P21.3) WILD-TYPE     20      2      7     41
D37V1, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          65                            20
  CLUS_2                          55                             2
  CLUS_3                          44                             7
  CLUS_4                          65                            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P21.3) MUTATED       95     72     62
  DEL PEAK 14(9P21.3) WILD-TYPE     17     39     14
D37V2, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          95                            17
  CLUS_2                          72                            39
  CLUS_3                          62                            14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9P21.3) MUTATED       34     47     21     30
  DEL PEAK 14(9P21.3) WILD-TYPE     13     11      5      8
D37V3, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          34                            13
  CLUS_2                          47                            11
  CLUS_3                          21                             5
  CLUS_4                          30                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9P21.3) MUTATED       19     46     27     40
  DEL PEAK 14(9P21.3) WILD-TYPE      8     12      8      9
D37V4, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          19                             8
  CLUS_2                          46                            12
  CLUS_3                          27                             8
  CLUS_4                          40                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P21.3) MUTATED       90     54     84
  DEL PEAK 14(9P21.3) WILD-TYPE      9     33     28
D37V5, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          90                             9
  CLUS_2                          54                            33
  CLUS_3                          84                            28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P21.3) MUTATED       56    127     45
  DEL PEAK 14(9P21.3) WILD-TYPE     14     51      5
D37V6, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          56                            14
  CLUS_2                         127                            51
  CLUS_3                          45                             5
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(9P21.3) MUTATED       41     72     62     31     12
  DEL PEAK 14(9P21.3) WILD-TYPE     24     19     15     11      0
D37V7, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          41                            24
  CLUS_2                          72                            19
  CLUS_3                          62                            15
  CLUS_4                          31                            11
  CLUS_5                          12                             0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9P21.3) MUTATED       54     60     26     78
  DEL PEAK 14(9P21.3) WILD-TYPE     22     20     10     17
D37V8, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          54                            22
  CLUS_2                          60                            20
  CLUS_3                          26                            10
  CLUS_4                          78                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(9P21.3) MUTATED       75     72     71
  DEL PEAK 14(9P21.3) WILD-TYPE     26     26     17
D37V9, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          75                            26
  CLUS_2                          72                            26
  CLUS_3                          71                            17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(9P21.3) MUTATED       85     68     47     18
  DEL PEAK 14(9P21.3) WILD-TYPE     33     21      8      7
D37V10, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          85                            33
  CLUS_2                          68                            21
  CLUS_3                          47                             8
  CLUS_4                          18                             7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = DEL PEAK 15(10P15.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(10P15.3) MUTATED       50     37     41     35
  DEL PEAK 15(10P15.3) WILD-TYPE     35     20     10     71
D38V1, multiclass
        clus
vv       DEL PEAK 15(10P15.3) MUTATED DEL PEAK 15(10P15.3) WILD-TYPE
  CLUS_1                           50                             35
  CLUS_2                           37                             20
  CLUS_3                           41                             10
  CLUS_4                           35                             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(10P15.3) MUTATED       63     48     52
  DEL PEAK 15(10P15.3) WILD-TYPE     49     63     24
D38V2, multiclass
        clus
vv       DEL PEAK 15(10P15.3) MUTATED DEL PEAK 15(10P15.3) WILD-TYPE
  CLUS_1                           63                             49
  CLUS_2                           48                             63
  CLUS_3                           52                             24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(10P15.3) MUTATED       25     31     16     23
  DEL PEAK 15(10P15.3) WILD-TYPE     22     27     10     15
D38V3, multiclass
        clus
vv       DEL PEAK 15(10P15.3) MUTATED DEL PEAK 15(10P15.3) WILD-TYPE
  CLUS_1                           25                             22
  CLUS_2                           31                             27
  CLUS_3                           16                             10
  CLUS_4                           23                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(10P15.3) MUTATED       11     36     23     25
  DEL PEAK 15(10P15.3) WILD-TYPE     16     22     12     24
D38V4, multiclass
        clus
vv       DEL PEAK 15(10P15.3) MUTATED DEL PEAK 15(10P15.3) WILD-TYPE
  CLUS_1                           11                             16
  CLUS_2                           36                             22
  CLUS_3                           23                             12
  CLUS_4                           25                             24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(10P15.3) MUTATED       72     38     53
  DEL PEAK 15(10P15.3) WILD-TYPE     27     49     59
D38V5, multiclass
        clus
vv       DEL PEAK 15(10P15.3) MUTATED DEL PEAK 15(10P15.3) WILD-TYPE
  CLUS_1                           72                             27
  CLUS_2                           38                             49
  CLUS_3                           53                             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(10P15.3) MUTATED       40     83     40
  DEL PEAK 15(10P15.3) WILD-TYPE     30     95     10
D38V6, multiclass
        clus
vv       DEL PEAK 15(10P15.3) MUTATED DEL PEAK 15(10P15.3) WILD-TYPE
  CLUS_1                           40                             30
  CLUS_2                           83                             95
  CLUS_3                           40                             10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(10P15.3) MUTATED       32     52     48     19      8
  DEL PEAK 15(10P15.3) WILD-TYPE     33     39     29     23      4
D38V7, multiclass
        clus
vv       DEL PEAK 15(10P15.3) MUTATED DEL PEAK 15(10P15.3) WILD-TYPE
  CLUS_1                           32                             33
  CLUS_2                           52                             39
  CLUS_3                           48                             29
  CLUS_4                           19                             23
  CLUS_5                            8                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(10P15.3) MUTATED       35     47     17     60
  DEL PEAK 15(10P15.3) WILD-TYPE     41     33     19     35
D38V8, multiclass
        clus
vv       DEL PEAK 15(10P15.3) MUTATED DEL PEAK 15(10P15.3) WILD-TYPE
  CLUS_1                           35                             41
  CLUS_2                           47                             33
  CLUS_3                           17                             19
  CLUS_4                           60                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(10P15.3) MUTATED       52     53     54
  DEL PEAK 15(10P15.3) WILD-TYPE     49     45     34
D38V9, multiclass
        clus
vv       DEL PEAK 15(10P15.3) MUTATED DEL PEAK 15(10P15.3) WILD-TYPE
  CLUS_1                           52                             49
  CLUS_2                           53                             45
  CLUS_3                           54                             34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(10P15.3) MUTATED       62     52     32     13
  DEL PEAK 15(10P15.3) WILD-TYPE     56     37     23     12
D38V10, multiclass
        clus
vv       DEL PEAK 15(10P15.3) MUTATED DEL PEAK 15(10P15.3) WILD-TYPE
  CLUS_1                           62                             56
  CLUS_2                           52                             37
  CLUS_3                           32                             23
  CLUS_4                           13                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = DEL PEAK 16(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(10Q23.31) MUTATED       51     42     48     47
  DEL PEAK 16(10Q23.31) WILD-TYPE     34     15      3     59
D39V1, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            51                              34
  CLUS_2                            42                              15
  CLUS_3                            48                               3
  CLUS_4                            47                              59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q23.31) MUTATED       76     58     54
  DEL PEAK 16(10Q23.31) WILD-TYPE     36     53     22
D39V2, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            76                              36
  CLUS_2                            58                              53
  CLUS_3                            54                              22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(10Q23.31) MUTATED       28     34     17     21
  DEL PEAK 16(10Q23.31) WILD-TYPE     19     24      9     17
D39V3, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            28                              19
  CLUS_2                            34                              24
  CLUS_3                            17                               9
  CLUS_4                            21                              17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(10Q23.31) MUTATED       12     34     20     34
  DEL PEAK 16(10Q23.31) WILD-TYPE     15     24     15     15
D39V4, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            12                              15
  CLUS_2                            34                              24
  CLUS_3                            20                              15
  CLUS_4                            34                              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q23.31) MUTATED       77     46     65
  DEL PEAK 16(10Q23.31) WILD-TYPE     22     41     47
D39V5, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            77                              22
  CLUS_2                            46                              41
  CLUS_3                            65                              47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q23.31) MUTATED       42    103     43
  DEL PEAK 16(10Q23.31) WILD-TYPE     28     75      7
D39V6, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            42                              28
  CLUS_2                           103                              75
  CLUS_3                            43                               7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(10Q23.31) MUTATED       33     60     49     29     10
  DEL PEAK 16(10Q23.31) WILD-TYPE     32     31     28     13      2
D39V7, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            33                              32
  CLUS_2                            60                              31
  CLUS_3                            49                              28
  CLUS_4                            29                              13
  CLUS_5                            10                               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(10Q23.31) MUTATED       40     46     26     69
  DEL PEAK 16(10Q23.31) WILD-TYPE     36     34     10     26
D39V8, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            40                              36
  CLUS_2                            46                              34
  CLUS_3                            26                              10
  CLUS_4                            69                              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(10Q23.31) MUTATED       62     63     56
  DEL PEAK 16(10Q23.31) WILD-TYPE     39     35     32
D39V9, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            62                              39
  CLUS_2                            63                              35
  CLUS_3                            56                              32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(10Q23.31) MUTATED       74     55     33     19
  DEL PEAK 16(10Q23.31) WILD-TYPE     44     34     22      6
D39V10, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            74                              44
  CLUS_2                            55                              34
  CLUS_3                            33                              22
  CLUS_4                            19                               6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = DEL PEAK 17(10Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10Q26.3) MUTATED       49     45     48     51
  DEL PEAK 17(10Q26.3) WILD-TYPE     36     12      3     55
D40V1, multiclass
        clus
vv       DEL PEAK 17(10Q26.3) MUTATED DEL PEAK 17(10Q26.3) WILD-TYPE
  CLUS_1                           49                             36
  CLUS_2                           45                             12
  CLUS_3                           48                              3
  CLUS_4                           51                             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(10Q26.3) MUTATED       76     63     54
  DEL PEAK 17(10Q26.3) WILD-TYPE     36     48     22
D40V2, multiclass
        clus
vv       DEL PEAK 17(10Q26.3) MUTATED DEL PEAK 17(10Q26.3) WILD-TYPE
  CLUS_1                           76                             36
  CLUS_2                           63                             48
  CLUS_3                           54                             22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10Q26.3) MUTATED       28     34     18     23
  DEL PEAK 17(10Q26.3) WILD-TYPE     19     24      8     15
D40V3, multiclass
        clus
vv       DEL PEAK 17(10Q26.3) MUTATED DEL PEAK 17(10Q26.3) WILD-TYPE
  CLUS_1                           28                             19
  CLUS_2                           34                             24
  CLUS_3                           18                              8
  CLUS_4                           23                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10Q26.3) MUTATED       12     37     23     31
  DEL PEAK 17(10Q26.3) WILD-TYPE     15     21     12     18
D40V4, multiclass
        clus
vv       DEL PEAK 17(10Q26.3) MUTATED DEL PEAK 17(10Q26.3) WILD-TYPE
  CLUS_1                           12                             15
  CLUS_2                           37                             21
  CLUS_3                           23                             12
  CLUS_4                           31                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(10Q26.3) MUTATED       82     47     64
  DEL PEAK 17(10Q26.3) WILD-TYPE     17     40     48
D40V5, multiclass
        clus
vv       DEL PEAK 17(10Q26.3) MUTATED DEL PEAK 17(10Q26.3) WILD-TYPE
  CLUS_1                           82                             17
  CLUS_2                           47                             40
  CLUS_3                           64                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(10Q26.3) MUTATED       43    106     44
  DEL PEAK 17(10Q26.3) WILD-TYPE     27     72      6
D40V6, multiclass
        clus
vv       DEL PEAK 17(10Q26.3) MUTATED DEL PEAK 17(10Q26.3) WILD-TYPE
  CLUS_1                           43                             27
  CLUS_2                          106                             72
  CLUS_3                           44                              6
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(10Q26.3) MUTATED       35     58     56     26     10
  DEL PEAK 17(10Q26.3) WILD-TYPE     30     33     21     16      2
D40V7, multiclass
        clus
vv       DEL PEAK 17(10Q26.3) MUTATED DEL PEAK 17(10Q26.3) WILD-TYPE
  CLUS_1                           35                             30
  CLUS_2                           58                             33
  CLUS_3                           56                             21
  CLUS_4                           26                             16
  CLUS_5                           10                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10Q26.3) MUTATED       43     50     22     70
  DEL PEAK 17(10Q26.3) WILD-TYPE     33     30     14     25
D40V8, multiclass
        clus
vv       DEL PEAK 17(10Q26.3) MUTATED DEL PEAK 17(10Q26.3) WILD-TYPE
  CLUS_1                           43                             33
  CLUS_2                           50                             30
  CLUS_3                           22                             14
  CLUS_4                           70                             25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(10Q26.3) MUTATED       61     61     63
  DEL PEAK 17(10Q26.3) WILD-TYPE     40     37     25
D40V9, multiclass
        clus
vv       DEL PEAK 17(10Q26.3) MUTATED DEL PEAK 17(10Q26.3) WILD-TYPE
  CLUS_1                           61                             40
  CLUS_2                           61                             37
  CLUS_3                           63                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(10Q26.3) MUTATED       74     57     38     16
  DEL PEAK 17(10Q26.3) WILD-TYPE     44     32     17      9
D40V10, multiclass
        clus
vv       DEL PEAK 17(10Q26.3) MUTATED DEL PEAK 17(10Q26.3) WILD-TYPE
  CLUS_1                           74                             44
  CLUS_2                           57                             32
  CLUS_3                           38                             17
  CLUS_4                           16                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = DEL PEAK 18(11P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(11P11.2) MUTATED       42     13     19     22
  DEL PEAK 18(11P11.2) WILD-TYPE     43     44     32     84
D41V1, multiclass
        clus
vv       DEL PEAK 18(11P11.2) MUTATED DEL PEAK 18(11P11.2) WILD-TYPE
  CLUS_1                           42                             43
  CLUS_2                           13                             44
  CLUS_3                           19                             32
  CLUS_4                           22                             84
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(11P11.2) MUTATED       41     24     31
  DEL PEAK 18(11P11.2) WILD-TYPE     71     87     45
D41V2, multiclass
        clus
vv       DEL PEAK 18(11P11.2) MUTATED DEL PEAK 18(11P11.2) WILD-TYPE
  CLUS_1                           41                             71
  CLUS_2                           24                             87
  CLUS_3                           31                             45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(11P11.2) MUTATED       13     21     10     15
  DEL PEAK 18(11P11.2) WILD-TYPE     34     37     16     23
D41V3, multiclass
        clus
vv       DEL PEAK 18(11P11.2) MUTATED DEL PEAK 18(11P11.2) WILD-TYPE
  CLUS_1                           13                             34
  CLUS_2                           21                             37
  CLUS_3                           10                             16
  CLUS_4                           15                             23
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(11P11.2) MUTATED       10     18     12     19
  DEL PEAK 18(11P11.2) WILD-TYPE     17     40     23     30
D41V4, multiclass
        clus
vv       DEL PEAK 18(11P11.2) MUTATED DEL PEAK 18(11P11.2) WILD-TYPE
  CLUS_1                           10                             17
  CLUS_2                           18                             40
  CLUS_3                           12                             23
  CLUS_4                           19                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(11P11.2) MUTATED       37     21     38
  DEL PEAK 18(11P11.2) WILD-TYPE     62     66     74
D41V5, multiclass
        clus
vv       DEL PEAK 18(11P11.2) MUTATED DEL PEAK 18(11P11.2) WILD-TYPE
  CLUS_1                           37                             62
  CLUS_2                           21                             66
  CLUS_3                           38                             74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(11P11.2) MUTATED       31     43     22
  DEL PEAK 18(11P11.2) WILD-TYPE     39    135     28
D41V6, multiclass
        clus
vv       DEL PEAK 18(11P11.2) MUTATED DEL PEAK 18(11P11.2) WILD-TYPE
  CLUS_1                           31                             39
  CLUS_2                           43                            135
  CLUS_3                           22                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(11P11.2) MUTATED       21     29     22     16      6
  DEL PEAK 18(11P11.2) WILD-TYPE     44     62     55     26      6
D41V7, multiclass
        clus
vv       DEL PEAK 18(11P11.2) MUTATED DEL PEAK 18(11P11.2) WILD-TYPE
  CLUS_1                           21                             44
  CLUS_2                           29                             62
  CLUS_3                           22                             55
  CLUS_4                           16                             26
  CLUS_5                            6                              6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(11P11.2) MUTATED       21     22     13     38
  DEL PEAK 18(11P11.2) WILD-TYPE     55     58     23     57
D41V8, multiclass
        clus
vv       DEL PEAK 18(11P11.2) MUTATED DEL PEAK 18(11P11.2) WILD-TYPE
  CLUS_1                           21                             55
  CLUS_2                           22                             58
  CLUS_3                           13                             23
  CLUS_4                           38                             57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(11P11.2) MUTATED       37     31     26
  DEL PEAK 18(11P11.2) WILD-TYPE     64     67     62
D41V9, multiclass
        clus
vv       DEL PEAK 18(11P11.2) MUTATED DEL PEAK 18(11P11.2) WILD-TYPE
  CLUS_1                           37                             64
  CLUS_2                           31                             67
  CLUS_3                           26                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(11P11.2) MUTATED       35     29     21      9
  DEL PEAK 18(11P11.2) WILD-TYPE     83     60     34     16
D41V10, multiclass
        clus
vv       DEL PEAK 18(11P11.2) MUTATED DEL PEAK 18(11P11.2) WILD-TYPE
  CLUS_1                           35                             83
  CLUS_2                           29                             60
  CLUS_3                           21                             34
  CLUS_4                            9                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = DEL PEAK 19(11Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(11Q23.3) MUTATED       66     24     32     39
  DEL PEAK 19(11Q23.3) WILD-TYPE     19     33     19     67
D42V1, multiclass
        clus
vv       DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE
  CLUS_1                           66                             19
  CLUS_2                           24                             33
  CLUS_3                           32                             19
  CLUS_4                           39                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11Q23.3) MUTATED       62     53     46
  DEL PEAK 19(11Q23.3) WILD-TYPE     50     58     30
D42V2, multiclass
        clus
vv       DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE
  CLUS_1                           62                             50
  CLUS_2                           53                             58
  CLUS_3                           46                             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(11Q23.3) MUTATED       28     34     16     20
  DEL PEAK 19(11Q23.3) WILD-TYPE     19     24     10     18
D42V3, multiclass
        clus
vv       DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE
  CLUS_1                           28                             19
  CLUS_2                           34                             24
  CLUS_3                           16                             10
  CLUS_4                           20                             18
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(11Q23.3) MUTATED       12     32     21     33
  DEL PEAK 19(11Q23.3) WILD-TYPE     15     26     14     16
D42V4, multiclass
        clus
vv       DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE
  CLUS_1                           12                             15
  CLUS_2                           32                             26
  CLUS_3                           21                             14
  CLUS_4                           33                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11Q23.3) MUTATED       50     40     71
  DEL PEAK 19(11Q23.3) WILD-TYPE     49     47     41
D42V5, multiclass
        clus
vv       DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE
  CLUS_1                           50                             49
  CLUS_2                           40                             47
  CLUS_3                           71                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11Q23.3) MUTATED       44     92     25
  DEL PEAK 19(11Q23.3) WILD-TYPE     26     86     25
D42V6, multiclass
        clus
vv       DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE
  CLUS_1                           44                             26
  CLUS_2                           92                             86
  CLUS_3                           25                             25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(11Q23.3) MUTATED       35     56     36     25      5
  DEL PEAK 19(11Q23.3) WILD-TYPE     30     35     41     17      7
D42V7, multiclass
        clus
vv       DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE
  CLUS_1                           35                             30
  CLUS_2                           56                             35
  CLUS_3                           36                             41
  CLUS_4                           25                             17
  CLUS_5                            5                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(11Q23.3) MUTATED       42     33     20     62
  DEL PEAK 19(11Q23.3) WILD-TYPE     34     47     16     33
D42V8, multiclass
        clus
vv       DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE
  CLUS_1                           42                             34
  CLUS_2                           33                             47
  CLUS_3                           20                             16
  CLUS_4                           62                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(11Q23.3) MUTATED       55     60     42
  DEL PEAK 19(11Q23.3) WILD-TYPE     46     38     46
D42V9, multiclass
        clus
vv       DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE
  CLUS_1                           55                             46
  CLUS_2                           60                             38
  CLUS_3                           42                             46
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(11Q23.3) MUTATED       71     37     35     14
  DEL PEAK 19(11Q23.3) WILD-TYPE     47     52     20     11
D42V10, multiclass
        clus
vv       DEL PEAK 19(11Q23.3) MUTATED DEL PEAK 19(11Q23.3) WILD-TYPE
  CLUS_1                           71                             47
  CLUS_2                           37                             52
  CLUS_3                           35                             20
  CLUS_4                           14                             11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DEL PEAK 20(12Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(12Q23.3) MUTATED       19     26     11     17
  DEL PEAK 20(12Q23.3) WILD-TYPE     66     31     40     89
D43V1, multiclass
        clus
vv       DEL PEAK 20(12Q23.3) MUTATED DEL PEAK 20(12Q23.3) WILD-TYPE
  CLUS_1                           19                             66
  CLUS_2                           26                             31
  CLUS_3                           11                             40
  CLUS_4                           17                             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(12Q23.3) MUTATED       36     18     19
  DEL PEAK 20(12Q23.3) WILD-TYPE     76     93     57
D43V2, multiclass
        clus
vv       DEL PEAK 20(12Q23.3) MUTATED DEL PEAK 20(12Q23.3) WILD-TYPE
  CLUS_1                           36                             76
  CLUS_2                           18                             93
  CLUS_3                           19                             57
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(12Q23.3) MUTATED       10     15      6      9
  DEL PEAK 20(12Q23.3) WILD-TYPE     37     43     20     29
D43V3, multiclass
        clus
vv       DEL PEAK 20(12Q23.3) MUTATED DEL PEAK 20(12Q23.3) WILD-TYPE
  CLUS_1                           10                             37
  CLUS_2                           15                             43
  CLUS_3                            6                             20
  CLUS_4                            9                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(12Q23.3) MUTATED        5     15      7     13
  DEL PEAK 20(12Q23.3) WILD-TYPE     22     43     28     36
D43V4, multiclass
        clus
vv       DEL PEAK 20(12Q23.3) MUTATED DEL PEAK 20(12Q23.3) WILD-TYPE
  CLUS_1                            5                             22
  CLUS_2                           15                             43
  CLUS_3                            7                             28
  CLUS_4                           13                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(12Q23.3) MUTATED       28     21     24
  DEL PEAK 20(12Q23.3) WILD-TYPE     71     66     88
D43V5, multiclass
        clus
vv       DEL PEAK 20(12Q23.3) MUTATED DEL PEAK 20(12Q23.3) WILD-TYPE
  CLUS_1                           28                             71
  CLUS_2                           21                             66
  CLUS_3                           24                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(12Q23.3) MUTATED       22     41     10
  DEL PEAK 20(12Q23.3) WILD-TYPE     48    137     40
D43V6, multiclass
        clus
vv       DEL PEAK 20(12Q23.3) MUTATED DEL PEAK 20(12Q23.3) WILD-TYPE
  CLUS_1                           22                             48
  CLUS_2                           41                            137
  CLUS_3                           10                             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(12Q23.3) MUTATED       18     20     18      6      5
  DEL PEAK 20(12Q23.3) WILD-TYPE     47     71     59     36      7
D43V7, multiclass
        clus
vv       DEL PEAK 20(12Q23.3) MUTATED DEL PEAK 20(12Q23.3) WILD-TYPE
  CLUS_1                           18                             47
  CLUS_2                           20                             71
  CLUS_3                           18                             59
  CLUS_4                            6                             36
  CLUS_5                            5                              7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(12Q23.3) MUTATED       17     15      6     29
  DEL PEAK 20(12Q23.3) WILD-TYPE     59     65     30     66
D43V8, multiclass
        clus
vv       DEL PEAK 20(12Q23.3) MUTATED DEL PEAK 20(12Q23.3) WILD-TYPE
  CLUS_1                           17                             59
  CLUS_2                           15                             65
  CLUS_3                            6                             30
  CLUS_4                           29                             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(12Q23.3) MUTATED       22     24     21
  DEL PEAK 20(12Q23.3) WILD-TYPE     79     74     67
D43V9, multiclass
        clus
vv       DEL PEAK 20(12Q23.3) MUTATED DEL PEAK 20(12Q23.3) WILD-TYPE
  CLUS_1                           22                             79
  CLUS_2                           24                             74
  CLUS_3                           21                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(12Q23.3) MUTATED       28     20     15      4
  DEL PEAK 20(12Q23.3) WILD-TYPE     90     69     40     21
D43V10, multiclass
        clus
vv       DEL PEAK 20(12Q23.3) MUTATED DEL PEAK 20(12Q23.3) WILD-TYPE
  CLUS_1                           28                             90
  CLUS_2                           20                             69
  CLUS_3                           15                             40
  CLUS_4                            4                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = DEL PEAK 21(13Q12.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(13Q12.11) MUTATED       20      6     24     18
  DEL PEAK 21(13Q12.11) WILD-TYPE     65     51     27     88
D44V1, multiclass
        clus
vv       DEL PEAK 21(13Q12.11) MUTATED DEL PEAK 21(13Q12.11) WILD-TYPE
  CLUS_1                            20                              65
  CLUS_2                             6                              51
  CLUS_3                            24                              27
  CLUS_4                            18                              88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(13Q12.11) MUTATED       25     32     11
  DEL PEAK 21(13Q12.11) WILD-TYPE     87     79     65
D44V2, multiclass
        clus
vv       DEL PEAK 21(13Q12.11) MUTATED DEL PEAK 21(13Q12.11) WILD-TYPE
  CLUS_1                            25                              87
  CLUS_2                            32                              79
  CLUS_3                            11                              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(13Q12.11) MUTATED       13      9      7     12
  DEL PEAK 21(13Q12.11) WILD-TYPE     34     49     19     26
D44V3, multiclass
        clus
vv       DEL PEAK 21(13Q12.11) MUTATED DEL PEAK 21(13Q12.11) WILD-TYPE
  CLUS_1                            13                              34
  CLUS_2                             9                              49
  CLUS_3                             7                              19
  CLUS_4                            12                              26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(13Q12.11) MUTATED        8     13      8     12
  DEL PEAK 21(13Q12.11) WILD-TYPE     19     45     27     37
D44V4, multiclass
        clus
vv       DEL PEAK 21(13Q12.11) MUTATED DEL PEAK 21(13Q12.11) WILD-TYPE
  CLUS_1                             8                              19
  CLUS_2                            13                              45
  CLUS_3                             8                              27
  CLUS_4                            12                              37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(13Q12.11) MUTATED       22     20     26
  DEL PEAK 21(13Q12.11) WILD-TYPE     77     67     86
D44V5, multiclass
        clus
vv       DEL PEAK 21(13Q12.11) MUTATED DEL PEAK 21(13Q12.11) WILD-TYPE
  CLUS_1                            22                              77
  CLUS_2                            20                              67
  CLUS_3                            26                              86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(13Q12.11) MUTATED       15     42     11
  DEL PEAK 21(13Q12.11) WILD-TYPE     55    136     39
D44V6, multiclass
        clus
vv       DEL PEAK 21(13Q12.11) MUTATED DEL PEAK 21(13Q12.11) WILD-TYPE
  CLUS_1                            15                              55
  CLUS_2                            42                             136
  CLUS_3                            11                              39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(13Q12.11) MUTATED       13     25     17      8      4
  DEL PEAK 21(13Q12.11) WILD-TYPE     52     66     60     34      8
D44V7, multiclass
        clus
vv       DEL PEAK 21(13Q12.11) MUTATED DEL PEAK 21(13Q12.11) WILD-TYPE
  CLUS_1                            13                              52
  CLUS_2                            25                              66
  CLUS_3                            17                              60
  CLUS_4                             8                              34
  CLUS_5                             4                               8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(13Q12.11) MUTATED       22     16      6     23
  DEL PEAK 21(13Q12.11) WILD-TYPE     54     64     30     72
D44V8, multiclass
        clus
vv       DEL PEAK 21(13Q12.11) MUTATED DEL PEAK 21(13Q12.11) WILD-TYPE
  CLUS_1                            22                              54
  CLUS_2                            16                              64
  CLUS_3                             6                              30
  CLUS_4                            23                              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(13Q12.11) MUTATED       20     26     21
  DEL PEAK 21(13Q12.11) WILD-TYPE     81     72     67
D44V9, multiclass
        clus
vv       DEL PEAK 21(13Q12.11) MUTATED DEL PEAK 21(13Q12.11) WILD-TYPE
  CLUS_1                            20                              81
  CLUS_2                            26                              72
  CLUS_3                            21                              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(13Q12.11) MUTATED       30     19     15      3
  DEL PEAK 21(13Q12.11) WILD-TYPE     88     70     40     22
D44V10, multiclass
        clus
vv       DEL PEAK 21(13Q12.11) MUTATED DEL PEAK 21(13Q12.11) WILD-TYPE
  CLUS_1                            30                              88
  CLUS_2                            19                              70
  CLUS_3                            15                              40
  CLUS_4                             3                              22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = DEL PEAK 22(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(13Q34) MUTATED       20      5     22     21
  DEL PEAK 22(13Q34) WILD-TYPE     65     52     29     85
D45V1, multiclass
        clus
vv       DEL PEAK 22(13Q34) MUTATED DEL PEAK 22(13Q34) WILD-TYPE
  CLUS_1                         20                           65
  CLUS_2                          5                           52
  CLUS_3                         22                           29
  CLUS_4                         21                           85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(13Q34) MUTATED       26     34      8
  DEL PEAK 22(13Q34) WILD-TYPE     86     77     68
D45V2, multiclass
        clus
vv       DEL PEAK 22(13Q34) MUTATED DEL PEAK 22(13Q34) WILD-TYPE
  CLUS_1                         26                           86
  CLUS_2                         34                           77
  CLUS_3                          8                           68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(13Q34) MUTATED       12      7      5     13
  DEL PEAK 22(13Q34) WILD-TYPE     35     51     21     25
D45V3, multiclass
        clus
vv       DEL PEAK 22(13Q34) MUTATED DEL PEAK 22(13Q34) WILD-TYPE
  CLUS_1                         12                           35
  CLUS_2                          7                           51
  CLUS_3                          5                           21
  CLUS_4                         13                           25
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(13Q34) MUTATED        6     11     10     10
  DEL PEAK 22(13Q34) WILD-TYPE     21     47     25     39
D45V4, multiclass
        clus
vv       DEL PEAK 22(13Q34) MUTATED DEL PEAK 22(13Q34) WILD-TYPE
  CLUS_1                          6                           21
  CLUS_2                         11                           47
  CLUS_3                         10                           25
  CLUS_4                         10                           39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(13Q34) MUTATED       21     21     25
  DEL PEAK 22(13Q34) WILD-TYPE     78     66     87
D45V5, multiclass
        clus
vv       DEL PEAK 22(13Q34) MUTATED DEL PEAK 22(13Q34) WILD-TYPE
  CLUS_1                         21                           78
  CLUS_2                         21                           66
  CLUS_3                         25                           87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(13Q34) MUTATED       12     46      9
  DEL PEAK 22(13Q34) WILD-TYPE     58    132     41
D45V6, multiclass
        clus
vv       DEL PEAK 22(13Q34) MUTATED DEL PEAK 22(13Q34) WILD-TYPE
  CLUS_1                         12                           58
  CLUS_2                         46                          132
  CLUS_3                          9                           41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(13Q34) MUTATED       14     23     17      8      3
  DEL PEAK 22(13Q34) WILD-TYPE     51     68     60     34      9
D45V7, multiclass
        clus
vv       DEL PEAK 22(13Q34) MUTATED DEL PEAK 22(13Q34) WILD-TYPE
  CLUS_1                         14                           51
  CLUS_2                         23                           68
  CLUS_3                         17                           60
  CLUS_4                          8                           34
  CLUS_5                          3                            9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(13Q34) MUTATED       18     18      6     23
  DEL PEAK 22(13Q34) WILD-TYPE     58     62     30     72
D45V8, multiclass
        clus
vv       DEL PEAK 22(13Q34) MUTATED DEL PEAK 22(13Q34) WILD-TYPE
  CLUS_1                         18                           58
  CLUS_2                         18                           62
  CLUS_3                          6                           30
  CLUS_4                         23                           72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(13Q34) MUTATED       23     22     20
  DEL PEAK 22(13Q34) WILD-TYPE     78     76     68
D45V9, multiclass
        clus
vv       DEL PEAK 22(13Q34) MUTATED DEL PEAK 22(13Q34) WILD-TYPE
  CLUS_1                         23                           78
  CLUS_2                         22                           76
  CLUS_3                         20                           68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(13Q34) MUTATED       25     21     16      3
  DEL PEAK 22(13Q34) WILD-TYPE     93     68     39     22
D45V10, multiclass
        clus
vv       DEL PEAK 22(13Q34) MUTATED DEL PEAK 22(13Q34) WILD-TYPE
  CLUS_1                         25                           93
  CLUS_2                         21                           68
  CLUS_3                         16                           39
  CLUS_4                          3                           22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = DEL PEAK 23(14Q23.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(14Q23.3) MUTATED       21     32     29     20
  DEL PEAK 23(14Q23.3) WILD-TYPE     64     25     22     86
D46V1, multiclass
        clus
vv       DEL PEAK 23(14Q23.3) MUTATED DEL PEAK 23(14Q23.3) WILD-TYPE
  CLUS_1                           21                             64
  CLUS_2                           32                             25
  CLUS_3                           29                             22
  CLUS_4                           20                             86
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(14Q23.3) MUTATED       38     36     28
  DEL PEAK 23(14Q23.3) WILD-TYPE     74     75     48
D46V2, multiclass
        clus
vv       DEL PEAK 23(14Q23.3) MUTATED DEL PEAK 23(14Q23.3) WILD-TYPE
  CLUS_1                           38                             74
  CLUS_2                           36                             75
  CLUS_3                           28                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(14Q23.3) MUTATED       15     23     10     10
  DEL PEAK 23(14Q23.3) WILD-TYPE     32     35     16     28
D46V3, multiclass
        clus
vv       DEL PEAK 23(14Q23.3) MUTATED DEL PEAK 23(14Q23.3) WILD-TYPE
  CLUS_1                           15                             32
  CLUS_2                           23                             35
  CLUS_3                           10                             16
  CLUS_4                           10                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(14Q23.3) MUTATED        8     25      8     17
  DEL PEAK 23(14Q23.3) WILD-TYPE     19     33     27     32
D46V4, multiclass
        clus
vv       DEL PEAK 23(14Q23.3) MUTATED DEL PEAK 23(14Q23.3) WILD-TYPE
  CLUS_1                            8                             19
  CLUS_2                           25                             33
  CLUS_3                            8                             27
  CLUS_4                           17                             32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(14Q23.3) MUTATED       45     31     26
  DEL PEAK 23(14Q23.3) WILD-TYPE     54     56     86
D46V5, multiclass
        clus
vv       DEL PEAK 23(14Q23.3) MUTATED DEL PEAK 23(14Q23.3) WILD-TYPE
  CLUS_1                           45                             54
  CLUS_2                           31                             56
  CLUS_3                           26                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(14Q23.3) MUTATED       22     58     22
  DEL PEAK 23(14Q23.3) WILD-TYPE     48    120     28
D46V6, multiclass
        clus
vv       DEL PEAK 23(14Q23.3) MUTATED DEL PEAK 23(14Q23.3) WILD-TYPE
  CLUS_1                           22                             48
  CLUS_2                           58                            120
  CLUS_3                           22                             28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(14Q23.3) MUTATED       22     21     29     15      8
  DEL PEAK 23(14Q23.3) WILD-TYPE     43     70     48     27      4
D46V7, multiclass
        clus
vv       DEL PEAK 23(14Q23.3) MUTATED DEL PEAK 23(14Q23.3) WILD-TYPE
  CLUS_1                           22                             43
  CLUS_2                           21                             70
  CLUS_3                           29                             48
  CLUS_4                           15                             27
  CLUS_5                            8                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(14Q23.3) MUTATED       24     27     15     29
  DEL PEAK 23(14Q23.3) WILD-TYPE     52     53     21     66
D46V8, multiclass
        clus
vv       DEL PEAK 23(14Q23.3) MUTATED DEL PEAK 23(14Q23.3) WILD-TYPE
  CLUS_1                           24                             52
  CLUS_2                           27                             53
  CLUS_3                           15                             21
  CLUS_4                           29                             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(14Q23.3) MUTATED       39     20     36
  DEL PEAK 23(14Q23.3) WILD-TYPE     62     78     52
D46V9, multiclass
        clus
vv       DEL PEAK 23(14Q23.3) MUTATED DEL PEAK 23(14Q23.3) WILD-TYPE
  CLUS_1                           39                             62
  CLUS_2                           20                             78
  CLUS_3                           36                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(14Q23.3) MUTATED       31     35     19     10
  DEL PEAK 23(14Q23.3) WILD-TYPE     87     54     36     15
D46V10, multiclass
        clus
vv       DEL PEAK 23(14Q23.3) MUTATED DEL PEAK 23(14Q23.3) WILD-TYPE
  CLUS_1                           31                             87
  CLUS_2                           35                             54
  CLUS_3                           19                             36
  CLUS_4                           10                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = DEL PEAK 24(14Q32.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(14Q32.2) MUTATED       23     32     27     18
  DEL PEAK 24(14Q32.2) WILD-TYPE     62     25     24     88
D47V1, multiclass
        clus
vv       DEL PEAK 24(14Q32.2) MUTATED DEL PEAK 24(14Q32.2) WILD-TYPE
  CLUS_1                           23                             62
  CLUS_2                           32                             25
  CLUS_3                           27                             24
  CLUS_4                           18                             88
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(14Q32.2) MUTATED       36     36     28
  DEL PEAK 24(14Q32.2) WILD-TYPE     76     75     48
D47V2, multiclass
        clus
vv       DEL PEAK 24(14Q32.2) MUTATED DEL PEAK 24(14Q32.2) WILD-TYPE
  CLUS_1                           36                             76
  CLUS_2                           36                             75
  CLUS_3                           28                             48
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(14Q32.2) MUTATED       14     24     10     11
  DEL PEAK 24(14Q32.2) WILD-TYPE     33     34     16     27
D47V3, multiclass
        clus
vv       DEL PEAK 24(14Q32.2) MUTATED DEL PEAK 24(14Q32.2) WILD-TYPE
  CLUS_1                           14                             33
  CLUS_2                           24                             34
  CLUS_3                           10                             16
  CLUS_4                           11                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(14Q32.2) MUTATED        9     26      8     16
  DEL PEAK 24(14Q32.2) WILD-TYPE     18     32     27     33
D47V4, multiclass
        clus
vv       DEL PEAK 24(14Q32.2) MUTATED DEL PEAK 24(14Q32.2) WILD-TYPE
  CLUS_1                            9                             18
  CLUS_2                           26                             32
  CLUS_3                            8                             27
  CLUS_4                           16                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(14Q32.2) MUTATED       46     30     24
  DEL PEAK 24(14Q32.2) WILD-TYPE     53     57     88
D47V5, multiclass
        clus
vv       DEL PEAK 24(14Q32.2) MUTATED DEL PEAK 24(14Q32.2) WILD-TYPE
  CLUS_1                           46                             53
  CLUS_2                           30                             57
  CLUS_3                           24                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(14Q32.2) MUTATED       22     57     21
  DEL PEAK 24(14Q32.2) WILD-TYPE     48    121     29
D47V6, multiclass
        clus
vv       DEL PEAK 24(14Q32.2) MUTATED DEL PEAK 24(14Q32.2) WILD-TYPE
  CLUS_1                           22                             48
  CLUS_2                           57                            121
  CLUS_3                           21                             29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(14Q32.2) MUTATED       23     20     27     15      8
  DEL PEAK 24(14Q32.2) WILD-TYPE     42     71     50     27      4
D47V7, multiclass
        clus
vv       DEL PEAK 24(14Q32.2) MUTATED DEL PEAK 24(14Q32.2) WILD-TYPE
  CLUS_1                           23                             42
  CLUS_2                           20                             71
  CLUS_3                           27                             50
  CLUS_4                           15                             27
  CLUS_5                            8                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(14Q32.2) MUTATED       23     27     15     28
  DEL PEAK 24(14Q32.2) WILD-TYPE     53     53     21     67
D47V8, multiclass
        clus
vv       DEL PEAK 24(14Q32.2) MUTATED DEL PEAK 24(14Q32.2) WILD-TYPE
  CLUS_1                           23                             53
  CLUS_2                           27                             53
  CLUS_3                           15                             21
  CLUS_4                           28                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(14Q32.2) MUTATED       39     21     33
  DEL PEAK 24(14Q32.2) WILD-TYPE     62     77     55
D47V9, multiclass
        clus
vv       DEL PEAK 24(14Q32.2) MUTATED DEL PEAK 24(14Q32.2) WILD-TYPE
  CLUS_1                           39                             62
  CLUS_2                           21                             77
  CLUS_3                           33                             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(14Q32.2) MUTATED       30     36     17     10
  DEL PEAK 24(14Q32.2) WILD-TYPE     88     53     38     15
D47V10, multiclass
        clus
vv       DEL PEAK 24(14Q32.2) MUTATED DEL PEAK 24(14Q32.2) WILD-TYPE
  CLUS_1                           30                             88
  CLUS_2                           36                             53
  CLUS_3                           17                             38
  CLUS_4                           10                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = DEL PEAK 25(15Q13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(15Q13.3) MUTATED       33     20      4     16
  DEL PEAK 25(15Q13.3) WILD-TYPE     52     37     47     90
D48V1, multiclass
        clus
vv       DEL PEAK 25(15Q13.3) MUTATED DEL PEAK 25(15Q13.3) WILD-TYPE
  CLUS_1                           33                             52
  CLUS_2                           20                             37
  CLUS_3                            4                             47
  CLUS_4                           16                             90
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(15Q13.3) MUTATED       34     17     22
  DEL PEAK 25(15Q13.3) WILD-TYPE     78     94     54
D48V2, multiclass
        clus
vv       DEL PEAK 25(15Q13.3) MUTATED DEL PEAK 25(15Q13.3) WILD-TYPE
  CLUS_1                           34                             78
  CLUS_2                           17                             94
  CLUS_3                           22                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(15Q13.3) MUTATED       10     21      3      9
  DEL PEAK 25(15Q13.3) WILD-TYPE     37     37     23     29
D48V3, multiclass
        clus
vv       DEL PEAK 25(15Q13.3) MUTATED DEL PEAK 25(15Q13.3) WILD-TYPE
  CLUS_1                           10                             37
  CLUS_2                           21                             37
  CLUS_3                            3                             23
  CLUS_4                            9                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(15Q13.3) MUTATED        6     18      5     14
  DEL PEAK 25(15Q13.3) WILD-TYPE     21     40     30     35
D48V4, multiclass
        clus
vv       DEL PEAK 25(15Q13.3) MUTATED DEL PEAK 25(15Q13.3) WILD-TYPE
  CLUS_1                            6                             21
  CLUS_2                           18                             40
  CLUS_3                            5                             30
  CLUS_4                           14                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(15Q13.3) MUTATED       26     16     31
  DEL PEAK 25(15Q13.3) WILD-TYPE     73     71     81
D48V5, multiclass
        clus
vv       DEL PEAK 25(15Q13.3) MUTATED DEL PEAK 25(15Q13.3) WILD-TYPE
  CLUS_1                           26                             73
  CLUS_2                           16                             71
  CLUS_3                           31                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(15Q13.3) MUTATED       25     37     11
  DEL PEAK 25(15Q13.3) WILD-TYPE     45    141     39
D48V6, multiclass
        clus
vv       DEL PEAK 25(15Q13.3) MUTATED DEL PEAK 25(15Q13.3) WILD-TYPE
  CLUS_1                           25                             45
  CLUS_2                           37                            141
  CLUS_3                           11                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(15Q13.3) MUTATED       17     20     21     10      3
  DEL PEAK 25(15Q13.3) WILD-TYPE     48     71     56     32      9
D48V7, multiclass
        clus
vv       DEL PEAK 25(15Q13.3) MUTATED DEL PEAK 25(15Q13.3) WILD-TYPE
  CLUS_1                           17                             48
  CLUS_2                           20                             71
  CLUS_3                           21                             56
  CLUS_4                           10                             32
  CLUS_5                            3                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(15Q13.3) MUTATED       17     19      8     27
  DEL PEAK 25(15Q13.3) WILD-TYPE     59     61     28     68
D48V8, multiclass
        clus
vv       DEL PEAK 25(15Q13.3) MUTATED DEL PEAK 25(15Q13.3) WILD-TYPE
  CLUS_1                           17                             59
  CLUS_2                           19                             61
  CLUS_3                            8                             28
  CLUS_4                           27                             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(15Q13.3) MUTATED       24     22     25
  DEL PEAK 25(15Q13.3) WILD-TYPE     77     76     63
D48V9, multiclass
        clus
vv       DEL PEAK 25(15Q13.3) MUTATED DEL PEAK 25(15Q13.3) WILD-TYPE
  CLUS_1                           24                             77
  CLUS_2                           22                             76
  CLUS_3                           25                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(15Q13.3) MUTATED       27     21     17      6
  DEL PEAK 25(15Q13.3) WILD-TYPE     91     68     38     19
D48V10, multiclass
        clus
vv       DEL PEAK 25(15Q13.3) MUTATED DEL PEAK 25(15Q13.3) WILD-TYPE
  CLUS_1                           27                             91
  CLUS_2                           21                             68
  CLUS_3                           17                             38
  CLUS_4                            6                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = DEL PEAK 26(15Q14) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(15Q14) MUTATED       35     20      1     17
  DEL PEAK 26(15Q14) WILD-TYPE     50     37     50     89
D49V1, multiclass
        clus
vv       DEL PEAK 26(15Q14) MUTATED DEL PEAK 26(15Q14) WILD-TYPE
  CLUS_1                         35                           50
  CLUS_2                         20                           37
  CLUS_3                          1                           50
  CLUS_4                         17                           89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(15Q14) MUTATED       31     17     25
  DEL PEAK 26(15Q14) WILD-TYPE     81     94     51
D49V2, multiclass
        clus
vv       DEL PEAK 26(15Q14) MUTATED DEL PEAK 26(15Q14) WILD-TYPE
  CLUS_1                         31                           81
  CLUS_2                         17                           94
  CLUS_3                         25                           51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(15Q14) MUTATED       10     17      6      9
  DEL PEAK 26(15Q14) WILD-TYPE     37     41     20     29
D49V3, multiclass
        clus
vv       DEL PEAK 26(15Q14) MUTATED DEL PEAK 26(15Q14) WILD-TYPE
  CLUS_1                         10                           37
  CLUS_2                         17                           41
  CLUS_3                          6                           20
  CLUS_4                          9                           29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(15Q14) MUTATED        5     16      7     14
  DEL PEAK 26(15Q14) WILD-TYPE     22     42     28     35
D49V4, multiclass
        clus
vv       DEL PEAK 26(15Q14) MUTATED DEL PEAK 26(15Q14) WILD-TYPE
  CLUS_1                          5                           22
  CLUS_2                         16                           42
  CLUS_3                          7                           28
  CLUS_4                         14                           35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(15Q14) MUTATED       25     15     33
  DEL PEAK 26(15Q14) WILD-TYPE     74     72     79
D49V5, multiclass
        clus
vv       DEL PEAK 26(15Q14) MUTATED DEL PEAK 26(15Q14) WILD-TYPE
  CLUS_1                         25                           74
  CLUS_2                         15                           72
  CLUS_3                         33                           79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(15Q14) MUTATED       26     37     10
  DEL PEAK 26(15Q14) WILD-TYPE     44    141     40
D49V6, multiclass
        clus
vv       DEL PEAK 26(15Q14) MUTATED DEL PEAK 26(15Q14) WILD-TYPE
  CLUS_1                         26                           44
  CLUS_2                         37                          141
  CLUS_3                         10                           40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(15Q14) MUTATED       16     25     20      8      3
  DEL PEAK 26(15Q14) WILD-TYPE     49     66     57     34      9
D49V7, multiclass
        clus
vv       DEL PEAK 26(15Q14) MUTATED DEL PEAK 26(15Q14) WILD-TYPE
  CLUS_1                         16                           49
  CLUS_2                         25                           66
  CLUS_3                         20                           57
  CLUS_4                          8                           34
  CLUS_5                          3                            9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(15Q14) MUTATED       18     18      6     30
  DEL PEAK 26(15Q14) WILD-TYPE     58     62     30     65
D49V8, multiclass
        clus
vv       DEL PEAK 26(15Q14) MUTATED DEL PEAK 26(15Q14) WILD-TYPE
  CLUS_1                         18                           58
  CLUS_2                         18                           62
  CLUS_3                          6                           30
  CLUS_4                         30                           65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(15Q14) MUTATED       22     26     24
  DEL PEAK 26(15Q14) WILD-TYPE     79     72     64
D49V9, multiclass
        clus
vv       DEL PEAK 26(15Q14) MUTATED DEL PEAK 26(15Q14) WILD-TYPE
  CLUS_1                         22                           79
  CLUS_2                         26                           72
  CLUS_3                         24                           64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(15Q14) MUTATED       30     20     18      4
  DEL PEAK 26(15Q14) WILD-TYPE     88     69     37     21
D49V10, multiclass
        clus
vv       DEL PEAK 26(15Q14) MUTATED DEL PEAK 26(15Q14) WILD-TYPE
  CLUS_1                         30                           88
  CLUS_2                         20                           69
  CLUS_3                         18                           37
  CLUS_4                          4                           21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK 27(15Q15.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(15Q15.2) MUTATED       37     23      1     17
  DEL PEAK 27(15Q15.2) WILD-TYPE     48     34     50     89
D50V1, multiclass
        clus
vv       DEL PEAK 27(15Q15.2) MUTATED DEL PEAK 27(15Q15.2) WILD-TYPE
  CLUS_1                           37                             48
  CLUS_2                           23                             34
  CLUS_3                            1                             50
  CLUS_4                           17                             89
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(15Q15.2) MUTATED       36     18     24
  DEL PEAK 27(15Q15.2) WILD-TYPE     76     93     52
D50V2, multiclass
        clus
vv       DEL PEAK 27(15Q15.2) MUTATED DEL PEAK 27(15Q15.2) WILD-TYPE
  CLUS_1                           36                             76
  CLUS_2                           18                             93
  CLUS_3                           24                             52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(15Q15.2) MUTATED       10     20      6     10
  DEL PEAK 27(15Q15.2) WILD-TYPE     37     38     20     28
D50V3, multiclass
        clus
vv       DEL PEAK 27(15Q15.2) MUTATED DEL PEAK 27(15Q15.2) WILD-TYPE
  CLUS_1                           10                             37
  CLUS_2                           20                             38
  CLUS_3                            6                             20
  CLUS_4                           10                             28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(15Q15.2) MUTATED        5     20      8     13
  DEL PEAK 27(15Q15.2) WILD-TYPE     22     38     27     36
D50V4, multiclass
        clus
vv       DEL PEAK 27(15Q15.2) MUTATED DEL PEAK 27(15Q15.2) WILD-TYPE
  CLUS_1                            5                             22
  CLUS_2                           20                             38
  CLUS_3                            8                             27
  CLUS_4                           13                             36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(15Q15.2) MUTATED       25     18     35
  DEL PEAK 27(15Q15.2) WILD-TYPE     74     69     77
D50V5, multiclass
        clus
vv       DEL PEAK 27(15Q15.2) MUTATED DEL PEAK 27(15Q15.2) WILD-TYPE
  CLUS_1                           25                             74
  CLUS_2                           18                             69
  CLUS_3                           35                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(15Q15.2) MUTATED       26     43      9
  DEL PEAK 27(15Q15.2) WILD-TYPE     44    135     41
D50V6, multiclass
        clus
vv       DEL PEAK 27(15Q15.2) MUTATED DEL PEAK 27(15Q15.2) WILD-TYPE
  CLUS_1                           26                             44
  CLUS_2                           43                            135
  CLUS_3                            9                             41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(15Q15.2) MUTATED       16     27     21     10      2
  DEL PEAK 27(15Q15.2) WILD-TYPE     49     64     56     32     10
D50V7, multiclass
        clus
vv       DEL PEAK 27(15Q15.2) MUTATED DEL PEAK 27(15Q15.2) WILD-TYPE
  CLUS_1                           16                             49
  CLUS_2                           27                             64
  CLUS_3                           21                             56
  CLUS_4                           10                             32
  CLUS_5                            2                             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(15Q15.2) MUTATED       18     19      8     31
  DEL PEAK 27(15Q15.2) WILD-TYPE     58     61     28     64
D50V8, multiclass
        clus
vv       DEL PEAK 27(15Q15.2) MUTATED DEL PEAK 27(15Q15.2) WILD-TYPE
  CLUS_1                           18                             58
  CLUS_2                           19                             61
  CLUS_3                            8                             28
  CLUS_4                           31                             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(15Q15.2) MUTATED       25     26     25
  DEL PEAK 27(15Q15.2) WILD-TYPE     76     72     63
D50V9, multiclass
        clus
vv       DEL PEAK 27(15Q15.2) MUTATED DEL PEAK 27(15Q15.2) WILD-TYPE
  CLUS_1                           25                             76
  CLUS_2                           26                             72
  CLUS_3                           25                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(15Q15.2) MUTATED       29     21     20      6
  DEL PEAK 27(15Q15.2) WILD-TYPE     89     68     35     19
D50V10, multiclass
        clus
vv       DEL PEAK 27(15Q15.2) MUTATED DEL PEAK 27(15Q15.2) WILD-TYPE
  CLUS_1                           29                             89
  CLUS_2                           21                             68
  CLUS_3                           20                             35
  CLUS_4                            6                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK 28(16P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(16P13.3) MUTATED       16     14     11     15
  DEL PEAK 28(16P13.3) WILD-TYPE     69     43     40     91
D51V1, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                           16                             69
  CLUS_2                           14                             43
  CLUS_3                           11                             40
  CLUS_4                           15                             91
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(16P13.3) MUTATED       26     12     18
  DEL PEAK 28(16P13.3) WILD-TYPE     86     99     58
D51V2, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                           26                             86
  CLUS_2                           12                             99
  CLUS_3                           18                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(16P13.3) MUTATED        9     16      0      8
  DEL PEAK 28(16P13.3) WILD-TYPE     38     42     26     30
D51V3, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                            9                             38
  CLUS_2                           16                             42
  CLUS_3                            0                             26
  CLUS_4                            8                             30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(16P13.3) MUTATED        6     15      6      6
  DEL PEAK 28(16P13.3) WILD-TYPE     21     43     29     43
D51V4, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                            6                             21
  CLUS_2                           15                             43
  CLUS_3                            6                             29
  CLUS_4                            6                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(16P13.3) MUTATED       16     11     29
  DEL PEAK 28(16P13.3) WILD-TYPE     83     76     83
D51V5, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                           16                             83
  CLUS_2                           11                             76
  CLUS_3                           29                             83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(16P13.3) MUTATED       13     35      8
  DEL PEAK 28(16P13.3) WILD-TYPE     57    143     42
D51V6, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                           13                             57
  CLUS_2                           35                            143
  CLUS_3                            8                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(16P13.3) MUTATED       14     22     11      7      1
  DEL PEAK 28(16P13.3) WILD-TYPE     51     69     66     35     11
D51V7, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                           14                             51
  CLUS_2                           22                             69
  CLUS_3                           11                             66
  CLUS_4                            7                             35
  CLUS_5                            1                             11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(16P13.3) MUTATED       15     12      6     22
  DEL PEAK 28(16P13.3) WILD-TYPE     61     68     30     73
D51V8, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                           15                             61
  CLUS_2                           12                             68
  CLUS_3                            6                             30
  CLUS_4                           22                             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(16P13.3) MUTATED       21     23     11
  DEL PEAK 28(16P13.3) WILD-TYPE     80     75     77
D51V9, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                           21                             80
  CLUS_2                           23                             75
  CLUS_3                           11                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(16P13.3) MUTATED       29     14      7      5
  DEL PEAK 28(16P13.3) WILD-TYPE     89     75     48     20
D51V10, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                           29                             89
  CLUS_2                           14                             75
  CLUS_3                            7                             48
  CLUS_4                            5                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK 29(16Q12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(16Q12.1) MUTATED       24     26     18     29
  DEL PEAK 29(16Q12.1) WILD-TYPE     61     31     33     77
D52V1, multiclass
        clus
vv       DEL PEAK 29(16Q12.1) MUTATED DEL PEAK 29(16Q12.1) WILD-TYPE
  CLUS_1                           24                             61
  CLUS_2                           26                             31
  CLUS_3                           18                             33
  CLUS_4                           29                             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q12.1) MUTATED       40     32     25
  DEL PEAK 29(16Q12.1) WILD-TYPE     72     79     51
D52V2, multiclass
        clus
vv       DEL PEAK 29(16Q12.1) MUTATED DEL PEAK 29(16Q12.1) WILD-TYPE
  CLUS_1                           40                             72
  CLUS_2                           32                             79
  CLUS_3                           25                             51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(16Q12.1) MUTATED       15     24      3     17
  DEL PEAK 29(16Q12.1) WILD-TYPE     32     34     23     21
D52V3, multiclass
        clus
vv       DEL PEAK 29(16Q12.1) MUTATED DEL PEAK 29(16Q12.1) WILD-TYPE
  CLUS_1                           15                             32
  CLUS_2                           24                             34
  CLUS_3                            3                             23
  CLUS_4                           17                             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(16Q12.1) MUTATED       10     23     12     14
  DEL PEAK 29(16Q12.1) WILD-TYPE     17     35     23     35
D52V4, multiclass
        clus
vv       DEL PEAK 29(16Q12.1) MUTATED DEL PEAK 29(16Q12.1) WILD-TYPE
  CLUS_1                           10                             17
  CLUS_2                           23                             35
  CLUS_3                           12                             23
  CLUS_4                           14                             35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q12.1) MUTATED       27     26     44
  DEL PEAK 29(16Q12.1) WILD-TYPE     72     61     68
D52V5, multiclass
        clus
vv       DEL PEAK 29(16Q12.1) MUTATED DEL PEAK 29(16Q12.1) WILD-TYPE
  CLUS_1                           27                             72
  CLUS_2                           26                             61
  CLUS_3                           44                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q12.1) MUTATED       21     64     12
  DEL PEAK 29(16Q12.1) WILD-TYPE     49    114     38
D52V6, multiclass
        clus
vv       DEL PEAK 29(16Q12.1) MUTATED DEL PEAK 29(16Q12.1) WILD-TYPE
  CLUS_1                           21                             49
  CLUS_2                           64                            114
  CLUS_3                           12                             38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(16Q12.1) MUTATED       24     38     20     10      2
  DEL PEAK 29(16Q12.1) WILD-TYPE     41     53     57     32     10
D52V7, multiclass
        clus
vv       DEL PEAK 29(16Q12.1) MUTATED DEL PEAK 29(16Q12.1) WILD-TYPE
  CLUS_1                           24                             41
  CLUS_2                           38                             53
  CLUS_3                           20                             57
  CLUS_4                           10                             32
  CLUS_5                            2                             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(16Q12.1) MUTATED       30     22      8     34
  DEL PEAK 29(16Q12.1) WILD-TYPE     46     58     28     61
D52V8, multiclass
        clus
vv       DEL PEAK 29(16Q12.1) MUTATED DEL PEAK 29(16Q12.1) WILD-TYPE
  CLUS_1                           30                             46
  CLUS_2                           22                             58
  CLUS_3                            8                             28
  CLUS_4                           34                             61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(16Q12.1) MUTATED       34     37     23
  DEL PEAK 29(16Q12.1) WILD-TYPE     67     61     65
D52V9, multiclass
        clus
vv       DEL PEAK 29(16Q12.1) MUTATED DEL PEAK 29(16Q12.1) WILD-TYPE
  CLUS_1                           34                             67
  CLUS_2                           37                             61
  CLUS_3                           23                             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(16Q12.1) MUTATED       47     25     17      5
  DEL PEAK 29(16Q12.1) WILD-TYPE     71     64     38     20
D52V10, multiclass
        clus
vv       DEL PEAK 29(16Q12.1) MUTATED DEL PEAK 29(16Q12.1) WILD-TYPE
  CLUS_1                           47                             71
  CLUS_2                           25                             64
  CLUS_3                           17                             38
  CLUS_4                            5                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK 30(16Q24.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(16Q24.3) MUTATED       27     30     18     32
  DEL PEAK 30(16Q24.3) WILD-TYPE     58     27     33     74
D53V1, multiclass
        clus
vv       DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE
  CLUS_1                           27                             58
  CLUS_2                           30                             27
  CLUS_3                           18                             33
  CLUS_4                           32                             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(16Q24.3) MUTATED       42     36     29
  DEL PEAK 30(16Q24.3) WILD-TYPE     70     75     47
D53V2, multiclass
        clus
vv       DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE
  CLUS_1                           42                             70
  CLUS_2                           36                             75
  CLUS_3                           29                             47
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(16Q24.3) MUTATED       14     24      6     18
  DEL PEAK 30(16Q24.3) WILD-TYPE     33     34     20     20
D53V3, multiclass
        clus
vv       DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE
  CLUS_1                           14                             33
  CLUS_2                           24                             34
  CLUS_3                            6                             20
  CLUS_4                           18                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(16Q24.3) MUTATED       10     23     13     16
  DEL PEAK 30(16Q24.3) WILD-TYPE     17     35     22     33
D53V4, multiclass
        clus
vv       DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE
  CLUS_1                           10                             17
  CLUS_2                           23                             35
  CLUS_3                           13                             22
  CLUS_4                           16                             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(16Q24.3) MUTATED       26     30     51
  DEL PEAK 30(16Q24.3) WILD-TYPE     73     57     61
D53V5, multiclass
        clus
vv       DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE
  CLUS_1                           26                             73
  CLUS_2                           30                             57
  CLUS_3                           51                             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(16Q24.3) MUTATED       24     72     11
  DEL PEAK 30(16Q24.3) WILD-TYPE     46    106     39
D53V6, multiclass
        clus
vv       DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE
  CLUS_1                           24                             46
  CLUS_2                           72                            106
  CLUS_3                           11                             39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(16Q24.3) MUTATED       22     42     23     13      3
  DEL PEAK 30(16Q24.3) WILD-TYPE     43     49     54     29      9
D53V7, multiclass
        clus
vv       DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE
  CLUS_1                           22                             43
  CLUS_2                           42                             49
  CLUS_3                           23                             54
  CLUS_4                           13                             29
  CLUS_5                            3                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(16Q24.3) MUTATED       31     23      8     41
  DEL PEAK 30(16Q24.3) WILD-TYPE     45     57     28     54
D53V8, multiclass
        clus
vv       DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE
  CLUS_1                           31                             45
  CLUS_2                           23                             57
  CLUS_3                            8                             28
  CLUS_4                           41                             54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(16Q24.3) MUTATED       33     45     25
  DEL PEAK 30(16Q24.3) WILD-TYPE     68     53     63
D53V9, multiclass
        clus
vv       DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE
  CLUS_1                           33                             68
  CLUS_2                           45                             53
  CLUS_3                           25                             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(16Q24.3) MUTATED       49     25     24      5
  DEL PEAK 30(16Q24.3) WILD-TYPE     69     64     31     20
D53V10, multiclass
        clus
vv       DEL PEAK 30(16Q24.3) MUTATED DEL PEAK 30(16Q24.3) WILD-TYPE
  CLUS_1                           49                             69
  CLUS_2                           25                             64
  CLUS_3                           24                             31
  CLUS_4                            5                             20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK 31(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(19P13.3) MUTATED       30     11     21     21
  DEL PEAK 31(19P13.3) WILD-TYPE     55     46     30     85
D54V1, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                           30                             55
  CLUS_2                           11                             46
  CLUS_3                           21                             30
  CLUS_4                           21                             85
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(19P13.3) MUTATED       35     26     22
  DEL PEAK 31(19P13.3) WILD-TYPE     77     85     54
D54V2, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                           35                             77
  CLUS_2                           26                             85
  CLUS_3                           22                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(19P13.3) MUTATED       15     12     16      9
  DEL PEAK 31(19P13.3) WILD-TYPE     32     46     10     29
D54V3, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                           15                             32
  CLUS_2                           12                             46
  CLUS_3                           16                             10
  CLUS_4                            9                             29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(19P13.3) MUTATED        8     12     10     22
  DEL PEAK 31(19P13.3) WILD-TYPE     19     46     25     27
D54V4, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                            8                             19
  CLUS_2                           12                             46
  CLUS_3                           10                             25
  CLUS_4                           22                             27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(19P13.3) MUTATED       21     18     44
  DEL PEAK 31(19P13.3) WILD-TYPE     78     69     68
D54V5, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                           21                             78
  CLUS_2                           18                             69
  CLUS_3                           44                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(19P13.3) MUTATED       25     44     14
  DEL PEAK 31(19P13.3) WILD-TYPE     45    134     36
D54V6, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                           25                             45
  CLUS_2                           44                            134
  CLUS_3                           14                             36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(19P13.3) MUTATED       21     27     19     12      3
  DEL PEAK 31(19P13.3) WILD-TYPE     44     64     58     30      9
D54V7, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                           21                             44
  CLUS_2                           27                             64
  CLUS_3                           19                             58
  CLUS_4                           12                             30
  CLUS_5                            3                              9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(19P13.3) MUTATED       26     18     10     28
  DEL PEAK 31(19P13.3) WILD-TYPE     50     62     26     67
D54V8, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                           26                             50
  CLUS_2                           18                             62
  CLUS_3                           10                             26
  CLUS_4                           28                             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(19P13.3) MUTATED       30     30     22
  DEL PEAK 31(19P13.3) WILD-TYPE     71     68     66
D54V9, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                           30                             71
  CLUS_2                           30                             68
  CLUS_3                           22                             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(19P13.3) MUTATED       38     18     20      6
  DEL PEAK 31(19P13.3) WILD-TYPE     80     71     35     19
D54V10, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                           38                             80
  CLUS_2                           18                             71
  CLUS_3                           20                             35
  CLUS_4                            6                             19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
