		Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1p36.22	52 (14%)	317	9.9999e-06	0.0081	0.0229	1	0.5179	1	0.24175	1	0.00021	0.111	0.11933	1	0.11014	1	0.04255	1	0.11932	1	0.03007	1
amp_1q21.3	135 (37%)	234	9.9999e-06	0.0081	9.9999e-06	0.0081	0.03303	1	0.02697	1	9.9999e-06	0.0081	9.9999e-06	0.0081	9.9999e-06	0.0081	9.9999e-06	0.0081	9.9999e-06	0.0081	9.9999e-06	0.0081
amp_1q42.3	122 (33%)	247	9.9999e-06	0.0081	9.9999e-06	0.0081	0.40238	1	0.096509	1	9.9999e-06	0.0081	8.9999e-05	0.0498	9.9999e-06	0.0081	9.9999e-06	0.0081	0.00446	1	9.9999e-06	0.0081
amp_3q26.2	125 (34%)	244	9.9999e-06	0.0081	0.00256	1	0.821	1	0.01119	1	0.44844	1	0.02867	1	0.01408	1	0.01766	1	0.0195	1	0.00437	1
amp_5p15.33	104 (28%)	265	9.9999e-06	0.0081	9.9999e-06	0.0081	0.12646	1	0.98509	1	9.9999e-06	0.0081	5e-05	0.0288	9.9999e-06	0.0081	2e-05	0.0124	9.9999e-05	0.055	9.9999e-06	0.0081
amp_5p13.1	103 (28%)	266	9.9999e-06	0.0081	9.9999e-06	0.0081	0.73993	1	0.85987	1	9.9999e-06	0.0081	5e-04	0.241	0.00018	0.0965	0.00011	0.0604	0.00117	0.516	9.9999e-06	0.0081
amp_6p21.1	99 (27%)	270	9.9999e-06	0.0081	9.9999e-06	0.0081	0.34845	1	0.1646	1	0.00064999	0.304	0.00076999	0.356	0.00033	0.167	0.00029	0.148	0.00034	0.17	2e-05	0.0124
amp_6q12	73 (20%)	296	9.9999e-06	0.0081	9.9999e-06	0.0081	0.066949	1	0.88324	1	6.9999e-05	0.0393	0.00037	0.184	0.00104	0.468	0.00032	0.163	0.00061999	0.291	3e-05	0.0179
amp_6q21	68 (18%)	301	9.9999e-06	0.0081	0.00054999	0.262	0.38263	1	0.4056	1	0.00143	0.613	0.00151	0.645	0.00125	0.542	0.00050999	0.245	0.00225	0.9	9.9999e-06	0.0081
amp_7p22.1	189 (51%)	180	9.9999e-06	0.0081	5e-05	0.0288	0.63572	1	0.86442	1	0.00021	0.111	3e-05	0.0179	0.00213	0.861	0.00050999	0.245	0.00172	0.724	9.9999e-06	0.0081
amp_7p11.2	172 (47%)	197	9.9999e-06	0.0081	0.00117	0.516	0.90553	1	0.85129	1	0.04374	1	0.00050999	0.245	0.0094899	1	0.04078	1	0.00199	0.818	0.00123	0.536
amp_7q21.2	168 (46%)	201	9.9999e-06	0.0081	0.00062999	0.295	0.19862	1	0.67052	1	0.51605	1	6.9999e-05	0.0393	0.02186	1	0.058149	1	0.04931	1	0.00255	1
amp_8p23.1	146 (40%)	223	5.9999e-05	0.0341	7.9999e-05	0.0446	0.59062	1	0.6021	1	0.054809	1	0.01783	1	0.36374	1	0.34441	1	0.03713	1	0.055039	1
amp_8q24.21	256 (69%)	113	9.9999e-06	0.0081	0.00033	0.167	0.38486	1	0.3824	1	0.0057999	1	0.01079	1	7.9999e-05	0.0446	0.00029	0.148	9.9999e-06	0.0081	9.9999e-06	0.0081
amp_9p24.1	57 (15%)	312	2e-05	0.0124	0.44928	1	0.61709	1	0.21899	1	0.10944	1	0.0055699	1	0.03109	1	0.30818	1	0.03804	1	0.12854	1
amp_9p13.3	71 (19%)	298	0.00274	1	0.48349	1	0.26666	1	0.31561	1	0.0098299	1	0.23203	1	0.0073199	1	0.43372	1	0.00179	0.745	0.17068	1
amp_9q34.3	98 (27%)	271	0.00025	0.129	0.17935	1	0.71166	1	0.56038	1	0.0286	1	0.29656	1	0.02872	1	0.42904	1	0.1666	1	0.093959	1
amp_10p11.22	98 (27%)	271	9.9999e-06	0.0081	9.9999e-06	0.0081	0.14722	1	0.52256	1	0.00112	0.5	0.0092699	1	0.00343	1	0.00013	0.0706	0.00184	0.762	8.9999e-05	0.0498
amp_10q22.2	68 (18%)	301	9.9999e-06	0.0081	0.0201	1	0.02687	1	0.25171	1	0.01821	1	0.02298	1	0.20223	1	0.18447	1	0.097599	1	0.02358	1
amp_10q26.13	72 (20%)	297	9.9999e-06	0.0081	0.0022	0.882	0.03627	1	0.33002	1	0.0055599	1	0.03177	1	0.63329	1	0.11046	1	0.89926	1	0.082699	1
amp_11p13	70 (19%)	299	0.00052999	0.253	0.04096	1	0.64347	1	0.11617	1	0.00056999	0.27	0.0058999	1	0.059579	1	0.00017	0.0915	0.064159	1	0.00456	1
amp_11q13.3	90 (24%)	279	9.9999e-06	0.0081	0.01811	1	0.18966	1	0.63905	1	0.12717	1	0.03702	1	0.00032	0.163	0.0061899	1	0.00017	0.0915	0.00172	0.724
amp_12p12.1	109 (30%)	260	9.9999e-06	0.0081	0.03774	1	0.42823	1	0.34777	1	0.20852	1	0.3667	1	0.00308	1	0.22987	1	0.00437	1	0.051079	1
amp_12q15	92 (25%)	277	9.9999e-06	0.0081	0.36114	1	0.21975	1	0.32889	1	0.27551	1	0.075209	1	0.089489	1	0.38898	1	0.25428	1	0.71569	1
amp_13q12.3	144 (39%)	225	9.9999e-06	0.0081	9.9999e-06	0.0081	0.32972	1	0.15262	1	0.01649	1	3e-05	0.0179	0.00033	0.167	0.00461	1	4e-04	0.198	0.00027	0.139
amp_13q22.1	149 (40%)	220	9.9999e-06	0.0081	9.9999e-06	0.0081	0.20035	1	0.67934	1	2e-05	0.0124	9.9999e-06	0.0081	0.00044	0.215	2e-05	0.0124	9.9999e-06	0.0081	9.9999e-06	0.0081
amp_15q26.1	88 (24%)	281	9.9999e-06	0.0081	0.00024	0.125	0.46411	1	0.28843	1	9.9999e-06	0.0081	2e-05	0.0124	0.0079699	1	0.0095299	1	0.0057699	1	0.00305	1
amp_17q12	116 (31%)	253	9.9999e-06	0.0081	9.9999e-06	0.0081	0.79457	1	0.03977	1	0.00021	0.111	0.00019	0.101	4e-05	0.0234	0.00021	0.111	0.0018	0.747	0.00091999	0.42
amp_18q11.2	117 (32%)	252	9.9999e-06	0.0081	0.00216	0.87	0.29368	1	0.28602	1	0.01519	1	0.00386	1	0.00126	0.546	0.00208	0.847	0.00092999	0.422	0.0049	1
amp_19p13.2	41 (11%)	328	0.00033	0.167	0.1187	1	0.90523	1	0.7566	1	0.73263	1	0.16045	1	0.9774	1	0.9756	1	0.87543	1	0.74388	1
amp_19q12	111 (30%)	258	9.9999e-06	0.0081	9.9999e-06	0.0081	0.0061799	1	0.11469	1	9.9999e-06	0.0081	9.9999e-06	0.0081	2e-05	0.0124	9.9999e-06	0.0081	0.00374	1	9.9999e-06	0.0081
amp_20q13.2	243 (66%)	126	9.9999e-06	0.0081	9.9999e-06	0.0081	0.0063699	1	0.01191	1	9.9999e-06	0.0081	9.9999e-06	0.0081	2e-05	0.0124	9.9999e-06	0.0081	0.00378	1	9.9999e-06	0.0081
amp_xq27.3	67 (18%)	302	6.9999e-05	0.0393	0.00324	1	0.59836	1	0.9633	1	0.18668	1	9.9999e-06	0.0081	0.02973	1	0.96944	1	0.054359	1	0.072319	1
del_1p36.11	104 (28%)	265	9.9999e-06	0.0081	9.9999e-06	0.0081	0.15634	1	0.00094999	0.43	0.00033	0.167	9.9999e-06	0.0081	0.0096199	1	0.00011	0.0604	0.00218	0.876	9.9999e-06	0.0081
del_1p13.2	75 (20%)	294	9.9999e-06	0.0081	9.9999e-06	0.0081	0.080619	1	0.063569	1	0.00122	0.533	0.00090999	0.416	0.18192	1	0.01702	1	0.01942	1	0.00317	1
del_1q25.1	13 (4%)	356	0.03729	1	0.094419	1	0.16792	1	0.89525	1	0.44398	1	0.41494	1	0.20678	1	0.71032	1	0.18816	1	0.071819	1
del_1q44	23 (6%)	346	0.00313	1	0.00103	0.465	0.30908	1	0.37279	1	0.73945	1	0.33748	1	0.01453	1	0.44327	1	0.01062	1	0.15525	1
del_2q32.1	53 (14%)	316	0.0088999	1	0.098849	1	0.49031	1	0.082589	1	0.090419	1	0.23992	1	0.37712	1	0.00206	0.84	0.15261	1	0.14674	1
del_2q37.2	54 (15%)	315	9.9999e-06	0.0081	5e-05	0.0288	0.27326	1	0.34505	1	0.00333	1	0.21376	1	0.0225	1	9.9999e-06	0.0081	0.080049	1	0.00167	0.706
del_3p26.1	115 (31%)	254	9.9999e-06	0.0081	2e-05	0.0124	0.34258	1	0.19442	1	0.0066299	1	5e-05	0.0288	8.9999e-05	0.0498	4e-05	0.0234	0.00043	0.212	9.9999e-06	0.0081
del_3p14.2	131 (36%)	238	9.9999e-06	0.0081	9.9999e-06	0.0081	0.40898	1	0.3713	1	7.9999e-05	0.0446	0.00019	0.101	9.9999e-06	0.0081	9.9999e-06	0.0081	0.00042	0.207	9.9999e-06	0.0081
del_3q26.31	46 (12%)	323	9.9999e-06	0.0081	9.9999e-06	0.0081	0.13357	1	0.37313	1	0.00043	0.212	0.00046	0.224	0.00123	0.536	0.00055999	0.265	0.00178	0.742	0.00282	1
del_4p16.3	142 (38%)	227	9.9999e-06	0.0081	0.00051999	0.249	0.45959	1	0.20071	1	3e-05	0.0179	5e-05	0.0288	0.00046	0.224	9.9999e-06	0.0081	0.00015	0.0811	9.9999e-06	0.0081
del_4q22.1	160 (43%)	209	9.9999e-06	0.0081	5.9999e-05	0.0341	0.10768	1	0.26818	1	0.00253	0.999	3e-05	0.0179	0.02907	1	0.00203	0.832	0.03044	1	0.00047	0.227
del_4q34.3	163 (44%)	206	9.9999e-06	0.0081	9.9999e-06	0.0081	0.051929	1	0.0088699	1	9.9999e-06	0.0081	2e-05	0.0124	4e-05	0.0234	9.9999e-06	0.0081	2e-05	0.0124	2e-05	0.0124
del_5q11.2	134 (36%)	235	9.9999e-06	0.0081	9.9999e-06	0.0081	0.24002	1	0.22377	1	9.9999e-06	0.0081	9.9999e-06	0.0081	9.9999e-06	0.0081	9.9999e-06	0.0081	9.9999e-06	0.0081	9.9999e-06	0.0081
del_5q23.2	122 (33%)	247	9.9999e-06	0.0081	9.9999e-06	0.0081	0.12288	1	0.10897	1	9.9999e-06	0.0081	9.9999e-06	0.0081	9.9999e-06	0.0081	9.9999e-06	0.0081	9.9999e-06	0.0081	9.9999e-06	0.0081
del_6p25.3	93 (25%)	276	9.9999e-06	0.0081	2e-04	0.106	0.13825	1	0.82083	1	0.00011	0.0604	5.9999e-05	0.0341	0.00068999	0.322	2e-05	0.0124	0.0072899	1	0.00043	0.212
del_6q14.1	72 (20%)	297	9.9999e-06	0.0081	0.00111	0.497	0.21388	1	0.8437	1	0.00060999	0.287	0.0050499	1	0.1233	1	0.0164	1	0.072169	1	0.04809	1
del_6q26	82 (22%)	287	9.9999e-06	0.0081	0.0082399	1	0.79159	1	0.70177	1	0.00077999	0.36	0.00247	0.978	0.15885	1	0.01163	1	0.077459	1	0.0063999	1
del_7q31.1	54 (15%)	315	9.9999e-06	0.0081	4e-05	0.0234	0.71467	1	0.49754	1	0.0085199	1	0.27684	1	0.01958	1	0.0070699	1	0.00376	1	0.00427	1
del_7q36.3	78 (21%)	291	9.9999e-06	0.0081	2e-05	0.0124	0.37977	1	0.079209	1	2e-05	0.0124	0.00034	0.17	0.00021	0.111	9.9999e-06	0.0081	0.00198	0.816	2e-05	0.0124
del_8p23.3	102 (28%)	267	9.9999e-06	0.0081	9.9999e-06	0.0081	0.075559	1	0.59437	1	9.9999e-06	0.0081	9.9999e-06	0.0081	0.00111	0.497	9.9999e-06	0.0081	5.9999e-05	0.0341	9.9999e-06	0.0081
del_9p23	156 (42%)	213	9.9999e-06	0.0081	2e-05	0.0124	0.02913	1	0.00113	0.502	9.9999e-06	0.0081	0.00176	0.737	0.00159	0.676	0.00356	1	0.03545	1	0.00091999	0.42
del_9p21.3	153 (41%)	216	9.9999e-06	0.0081	9.9999e-06	0.0081	6.9999e-05	0.0393	9.9999e-06	0.0081	9.9999e-06	0.0081	9.9999e-06	0.0081	0.00498	1	0.00074999	0.347	0.0067599	1	4e-05	0.0234
del_9q21.11	93 (25%)	276	9.9999e-06	0.0081	0.00346	1	0.13855	1	0.056499	1	0.00155	0.66	0.03544	1	0.00478	1	0.00049	0.237	0.00171	0.722	0.00024	0.125
del_10p15.3	62 (17%)	307	3e-05	0.0179	0.0188	1	0.30425	1	0.41691	1	0.059989	1	0.10174	1	0.060289	1	0.03765	1	0.0086499	1	0.0066399	1
del_10q22.3	61 (17%)	308	9.9999e-06	0.0081	0.0136	1	0.74886	1	0.057659	1	0.00018	0.0965	0.00035	0.174	0.0058399	1	0.0053199	1	0.00332	1	0.00022	0.115
del_10q23.31	90 (24%)	279	9.9999e-06	0.0081	0.00015	0.0811	0.063409	1	0.00019	0.101	9.9999e-06	0.0081	9.9999e-06	0.0081	0.00013	0.0706	5.9999e-05	0.0341	0.00115	0.509	9.9999e-06	0.0081
del_11p15.4	79 (21%)	290	9.9999e-06	0.0081	9.9999e-06	0.0081	2e-05	0.0124	0.00079999	0.368	0.00145	0.621	0.01269	1	0.00108	0.485	7.9999e-05	0.0446	0.03796	1	0.00118	0.517
del_11q23.2	82 (22%)	287	9.9999e-06	0.0081	0.0081799	1	0.70079	1	0.15338	1	0.00112	0.5	0.00012	0.0654	0.091359	1	0.20353	1	0.02786	1	0.04259	1
del_12p13.1	57 (15%)	312	9.9999e-06	0.0081	9.9999e-06	0.0081	0.54096	1	0.4188	1	3e-05	0.0179	3e-05	0.0179	0.01875	1	0.01204	1	0.01142	1	5e-05	0.0288
del_13q12.11	52 (14%)	317	9.9999e-06	0.0081	0.10895	1	0.42605	1	0.36566	1	0.065769	1	0.02223	1	0.39012	1	0.42302	1	0.17854	1	0.2192	1
del_14q23.3	108 (29%)	261	9.9999e-06	0.0081	9.9999e-06	0.0081	0.75152	1	0.43015	1	4e-05	0.0234	0.00043	0.212	0.00129	0.557	3e-05	0.0179	0.00073999	0.344	0.00012	0.0654
del_14q32.33	106 (29%)	263	9.9999e-06	0.0081	0.00069999	0.326	0.92765	1	0.22163	1	0.00209	0.847	0.0052399	1	0.02165	1	0.03193	1	0.02923	1	0.068349	1
del_15q11.2	101 (27%)	268	9.9999e-06	0.0081	3e-05	0.0179	0.00177	0.74	0.26722	1	9.9999e-06	0.0081	2e-05	0.0124	0.00024	0.125	2e-05	0.0124	9.9999e-06	0.0081	9.9999e-06	0.0081
del_15q15.1	103 (28%)	266	9.9999e-06	0.0081	9.9999e-06	0.0081	0.00356	1	0.29414	1	9.9999e-06	0.0081	2e-05	0.0124	0.00117	0.516	9.9999e-06	0.0081	9.9999e-06	0.0081	9.9999e-06	0.0081
del_16p13.3	75 (20%)	294	9.9999e-06	0.0081	0.00056999	0.27	0.69999	1	0.81704	1	9.9999e-06	0.0081	9.9999e-06	0.0081	9.9999e-06	0.0081	5e-05	0.0288	9.9999e-06	0.0081	9.9999e-06	0.0081
del_16q23.1	146 (40%)	223	9.9999e-06	0.0081	0.00272	1	0.47043	1	0.17038	1	0.00187	0.772	0.0090999	1	0.00442	1	0.0185	1	5e-05	0.0288	0.00096999	0.438
del_17p12	141 (38%)	228	9.9999e-06	0.0081	9.9999e-06	0.0081	0.40051	1	0.0082399	1	9.9999e-06	0.0081	9.9999e-06	0.0081	4e-05	0.0234	9.9999e-06	0.0081	9.9999e-06	0.0081	9.9999e-06	0.0081
del_17q24.3	68 (18%)	301	9.9999e-06	0.0081	0.00011	0.0604	0.19043	1	0.22018	1	0.00161	0.683	0.00235	0.935	0.069729	1	0.00041	0.203	0.00363	1	0.00135	0.58
del_18q21.2	169 (46%)	200	9.9999e-06	0.0081	0.00046	0.224	0.66728	1	0.45165	1	0.00031	0.158	0.0041	1	0.00115	0.509	0.00278	1	2e-04	0.106	0.00374	1
del_19p13.3	127 (34%)	242	9.9999e-06	0.0081	9.9999e-06	0.0081	0.00364	1	0.00495	1	9.9999e-06	0.0081	9.9999e-06	0.0081	9.9999e-06	0.0081	9.9999e-06	0.0081	9.9999e-06	0.0081	9.9999e-06	0.0081
del_19q13.11	57 (15%)	312	9.9999e-06	0.0081	9.9999e-06	0.0081	0.063429	1	0.71141	1	2e-05	0.0124	0.00054999	0.262	0.00024	0.125	9.9999e-06	0.0081	0.00027	0.139	5.9999e-05	0.0341
del_20p12.1	31 (8%)	338	0.00208	0.847	0.00233	0.93	0.65835	1	0.19235	1	0.01537	1	0.085479	1	0.0292	1	0.11249	1	0.02619	1	0.066279	1
del_21q11.2	140 (38%)	229	9.9999e-06	0.0081	0.00027	0.139	0.34203	1	0.20249	1	0.0024	0.953	0.00445	1	5.9999e-05	0.0341	0.01126	1	4e-05	0.0234	0.00032	0.163
del_21q22.13	152 (41%)	217	9.9999e-06	0.0081	0.02242	1	0.10155	1	0.23991	1	0.00203	0.832	0.00037	0.184	0.00023	0.12	0.00087999	0.403	4e-05	0.0234	0.00073999	0.344
del_22q13.31	129 (35%)	240	9.9999e-06	0.0081	9.9999e-06	0.0081	0.0486	1	0.0064599	1	0.0013	0.56	0.00435	1	3e-05	0.0179	9.9999e-06	0.0081	0.00085999	0.395	9.9999e-06	0.0081
del_xp22.2	67 (18%)	302	9.9999e-06	0.0081	2e-05	0.0124	0.36699	1	0.058959	1	0.00019	0.101	0.00024	0.125	0.090959	1	0.00298	1	0.21466	1	0.00016	0.0862
del_xp21.1	64 (17%)	305	9.9999e-06	0.0081	0.00338	1	0.092889	1	0.02246	1	0.01406	1	0.0254	1	0.19721	1	0.33617	1	0.21718	1	0.04152	1
del_xq21.33	46 (12%)	323	3e-05	0.0179	0.00021	0.111	0.81496	1	0.03533	1	0.0081699	1	0.052119	1	0.17446	1	0.20418	1	0.52301	1	0.092439	1
