Correlation between gene mutation status and molecular subtypes


		Clinical Features	MRNA CNMF	MRNA CHIERARCHICAL	CN CNMF	METHLYATION CNMF	RPPA CNMF	RPPA CHIERARCHICAL	MRNASEQ CNMF	MRNASEQ CHIERARCHICAL	MIRSEQ CNMF	MIRSEQ CHIERARCHICAL	MIRSEQ MATURE CNMF	MIRSEQ MATURE CHIERARCHICAL
	nMutated (%)	nWild-Type	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test
TP53	69 (28%)	179	4e-05 (0.0844)	1e-05 (0.0214)	1e-05 (0.0214)	1e-05 (0.0214)	5e-05 (0.105)	0.199 (1.00)	1e-05 (0.0214)	1e-05 (0.0214)	1e-05 (0.0214)	1e-05 (0.0214)	1e-05 (0.0214)	1e-05 (0.0214)
PTEN	161 (65%)	87	0.00395 (1.00)	3e-05 (0.0634)	1e-05 (0.0214)	1e-05 (0.0214)	0.0196 (1.00)	0.0127 (1.00)	1e-05 (0.0214)	1e-05 (0.0214)	1e-05 (0.0214)	1e-05 (0.0214)	1e-05 (0.0214)	1e-05 (0.0214)
CTNNB1	74 (30%)	174	1e-05 (0.0214)	2e-05 (0.0423)	1e-05 (0.0214)	0.00322 (1.00)	1e-05 (0.0214)	0.00533 (1.00)	1e-05 (0.0214)	1e-05 (0.0214)	1e-05 (0.0214)	1e-05 (0.0214)	0.123 (1.00)	0.41 (1.00)
PIK3R1	83 (33%)	165	0.0675 (1.00)	0.0609 (1.00)	0.0002 (0.421)	3e-05 (0.0634)	0.668 (1.00)	0.478 (1.00)	0.00011 (0.232)	2e-05 (0.0423)	0.0102 (1.00)	0.0251 (1.00)	0.049 (1.00)	0.145 (1.00)
ARID1A	83 (33%)	165	0.267 (1.00)	0.0722 (1.00)	1e-05 (0.0214)	0.103 (1.00)	0.0176 (1.00)	0.335 (1.00)	0.0216 (1.00)	3e-05 (0.0634)	0.0347 (1.00)	0.00202 (1.00)	0.0319 (1.00)	0.00426 (1.00)
CTCF	44 (18%)	204	0.15 (1.00)	0.203 (1.00)	3e-05 (0.0634)	0.0667 (1.00)	0.0621 (1.00)	0.612 (1.00)	0.00086 (1.00)	0.00153 (1.00)	0.0065 (1.00)	0.0578 (1.00)	0.01 (1.00)	0.105 (1.00)
FBXW7	39 (16%)	209	0.225 (1.00)	0.31 (1.00)	0.615 (1.00)	0.0357 (1.00)	0.11 (1.00)	0.325 (1.00)	0.0657 (1.00)	0.021 (1.00)	0.761 (1.00)	0.058 (1.00)	0.298 (1.00)	0.0647 (1.00)
KRAS	53 (21%)	195	0.205 (1.00)	0.0123 (1.00)	0.00136 (1.00)	0.0541 (1.00)	0.279 (1.00)	0.106 (1.00)	0.141 (1.00)	0.0142 (1.00)	0.0639 (1.00)	0.0122 (1.00)	0.0538 (1.00)	0.0387 (1.00)
ARHGAP35	36 (15%)	212	0.226 (1.00)	0.887 (1.00)	0.378 (1.00)	1 (1.00)	0.0496 (1.00)	0.127 (1.00)	0.24 (1.00)	0.779 (1.00)	0.596 (1.00)	0.241 (1.00)	0.345 (1.00)	0.214 (1.00)
PIK3CA	132 (53%)	116	0.86 (1.00)	0.38 (1.00)	0.419 (1.00)	0.746 (1.00)	0.379 (1.00)	0.658 (1.00)	0.737 (1.00)	0.223 (1.00)	0.335 (1.00)	0.447 (1.00)	0.311 (1.00)	0.406 (1.00)
FGFR2	31 (12%)	217	0.385 (1.00)	0.366 (1.00)	0.241 (1.00)	1 (1.00)	0.976 (1.00)	0.519 (1.00)	1 (1.00)	0.309 (1.00)	0.457 (1.00)	0.0303 (1.00)	0.612 (1.00)	0.943 (1.00)
ZFHX3	44 (18%)	204	0.373 (1.00)	0.181 (1.00)	0.0392 (1.00)	0.0146 (1.00)	0.325 (1.00)	0.962 (1.00)	0.936 (1.00)	0.171 (1.00)	0.231 (1.00)	0.0686 (1.00)	0.576 (1.00)	0.654 (1.00)
TCP11L2	14 (6%)	234	0.0438 (1.00)	0.0191 (1.00)	0.0174 (1.00)	0.106 (1.00)	0.184 (1.00)	0.342 (1.00)	0.31 (1.00)	0.0317 (1.00)	0.487 (1.00)	0.0111 (1.00)	0.56 (1.00)	0.543 (1.00)
SPOP	21 (8%)	227	0.345 (1.00)	0.678 (1.00)	0.733 (1.00)	0.422 (1.00)	0.829 (1.00)	0.883 (1.00)	0.232 (1.00)	0.734 (1.00)	0.884 (1.00)	0.639 (1.00)	0.55 (1.00)	0.295 (1.00)
RBMX	13 (5%)	235	0.191 (1.00)	0.092 (1.00)	0.156 (1.00)	0.385 (1.00)	0.017 (1.00)	0.67 (1.00)	0.428 (1.00)	0.823 (1.00)	1 (1.00)	0.0259 (1.00)	0.812 (1.00)	0.833 (1.00)
SOX17	7 (3%)	241			0.00467 (1.00)	0.14 (1.00)	0.425 (1.00)	0.163 (1.00)	0.183 (1.00)	0.433 (1.00)	0.714 (1.00)	0.481 (1.00)
NFE2L2	15 (6%)	233	0.0907 (1.00)	0.323 (1.00)	0.0153 (1.00)	0.492 (1.00)	0.136 (1.00)	0.195 (1.00)	0.0149 (1.00)	0.0195 (1.00)	0.217 (1.00)	0.113 (1.00)	0.307 (1.00)	0.504 (1.00)
CCND1	14 (6%)	234	0.632 (1.00)	0.809 (1.00)	0.0795 (1.00)	0.262 (1.00)	0.628 (1.00)	0.965 (1.00)	0.481 (1.00)	0.0305 (1.00)	0.06 (1.00)	0.424 (1.00)	0.441 (1.00)	0.277 (1.00)
GNPTAB	20 (8%)	228	0.455 (1.00)	0.0782 (1.00)	0.00728 (1.00)	0.116 (1.00)	0.397 (1.00)	0.913 (1.00)	0.166 (1.00)	0.0547 (1.00)	0.497 (1.00)	0.205 (1.00)	1 (1.00)	0.131 (1.00)
ARID5B	29 (12%)	219	0.961 (1.00)	0.138 (1.00)	0.00613 (1.00)	0.19 (1.00)	0.234 (1.00)	0.173 (1.00)	0.16 (1.00)	0.0487 (1.00)	0.257 (1.00)	0.266 (1.00)	0.303 (1.00)	0.108 (1.00)
DNER	18 (7%)	230	0.189 (1.00)	0.092 (1.00)	0.00165 (1.00)	0.66 (1.00)	0.0114 (1.00)	0.286 (1.00)	0.91 (1.00)	0.0625 (1.00)	0.663 (1.00)	0.422 (1.00)	0.683 (1.00)	0.894 (1.00)
EP300	21 (8%)	227	1 (1.00)	0.914 (1.00)	0.0339 (1.00)	0.229 (1.00)	0.142 (1.00)	0.56 (1.00)	0.436 (1.00)	0.226 (1.00)	0.318 (1.00)	0.507 (1.00)	0.758 (1.00)	0.191 (1.00)
MAX	11 (4%)	237			0.0242 (1.00)	0.492 (1.00)	0.666 (1.00)	0.923 (1.00)	0.513 (1.00)	0.194 (1.00)	1 (1.00)	0.713 (1.00)	0.849 (1.00)	0.541 (1.00)
SGK1	15 (6%)	233	0.383 (1.00)	0.281 (1.00)	0.205 (1.00)	0.732 (1.00)	0.173 (1.00)	1 (1.00)	0.312 (1.00)	0.663 (1.00)	0.289 (1.00)	0.379 (1.00)	0.811 (1.00)	1 (1.00)
NRAS	9 (4%)	239			0.316 (1.00)		0.257 (1.00)	0.202 (1.00)	0.704 (1.00)	0.906 (1.00)	0.581 (1.00)	0.907 (1.00)
KLHL8	12 (5%)	236	0.381 (1.00)	0.283 (1.00)	0.0944 (1.00)	0.508 (1.00)	0.747 (1.00)	0.679 (1.00)	0.235 (1.00)	0.111 (1.00)	0.428 (1.00)	0.395 (1.00)	0.508 (1.00)	1 (1.00)
MORC4	20 (8%)	228	0.583 (1.00)	0.888 (1.00)	0.22 (1.00)	0.444 (1.00)	0.162 (1.00)	0.386 (1.00)	0.143 (1.00)	0.0194 (1.00)	0.0186 (1.00)	0.653 (1.00)	0.348 (1.00)	0.143 (1.00)
ZNF781	10 (4%)	238			0.245 (1.00)	0.767 (1.00)	0.818 (1.00)	1 (1.00)	0.57 (1.00)	0.551 (1.00)	0.915 (1.00)	0.649 (1.00)	0.864 (1.00)	0.568 (1.00)
MKI67	29 (12%)	219	0.0242 (1.00)	0.0152 (1.00)	0.00019 (0.401)	0.325 (1.00)	0.348 (1.00)	0.575 (1.00)	0.0742 (1.00)	0.0144 (1.00)	0.184 (1.00)	0.108 (1.00)	1 (1.00)	0.29 (1.00)
ING1	13 (5%)	235			0.0222 (1.00)	0.658 (1.00)	0.357 (1.00)	0.863 (1.00)	0.94 (1.00)	0.385 (1.00)	0.753 (1.00)	0.179 (1.00)	0.465 (1.00)	0.113 (1.00)
INTS7	8 (3%)	240	0.382 (1.00)	0.284 (1.00)	0.387 (1.00)		0.125 (1.00)	0.835 (1.00)	0.0935 (1.00)	0.00433 (1.00)	0.0324 (1.00)	0.315 (1.00)
CCDC6	6 (2%)	242			0.851 (1.00)	0.517 (1.00)	0.198 (1.00)	0.419 (1.00)	0.449 (1.00)	0.28 (1.00)	0.0956 (1.00)	0.117 (1.00)	0.364 (1.00)	0.635 (1.00)
EIF2S2	9 (4%)	239			0.276 (1.00)	0.733 (1.00)	0.885 (1.00)	0.614 (1.00)	0.279 (1.00)	0.317 (1.00)	0.58 (1.00)	0.438 (1.00)	0.685 (1.00)	0.544 (1.00)
RBBP6	22 (9%)	226	0.584 (1.00)	0.021 (1.00)	0.00263 (1.00)	0.926 (1.00)	0.808 (1.00)	0.957 (1.00)	0.0577 (1.00)	0.00917 (1.00)	0.605 (1.00)	0.0785 (1.00)	0.698 (1.00)	0.0289 (1.00)
SOS1	12 (5%)	236	0.63 (1.00)	0.809 (1.00)	0.257 (1.00)	0.558 (1.00)	0.218 (1.00)	0.257 (1.00)	0.666 (1.00)	0.602 (1.00)	0.195 (1.00)	0.411 (1.00)	1 (1.00)	0.546 (1.00)
NAT1	7 (3%)	241	0.382 (1.00)	0.0796 (1.00)	0.182 (1.00)		0.107 (1.00)	0.0238 (1.00)	0.458 (1.00)	0.287 (1.00)	1 (1.00)	0.572 (1.00)	0.313 (1.00)	0.0602 (1.00)
ADNP	14 (6%)	234	0.0828 (1.00)	0.192 (1.00)	0.0589 (1.00)	0.878 (1.00)	0.591 (1.00)	0.678 (1.00)	0.452 (1.00)	0.211 (1.00)	0.737 (1.00)	0.93 (1.00)	0.851 (1.00)	0.0416 (1.00)
VPS11	12 (5%)	236	0.382 (1.00)	0.281 (1.00)	0.0807 (1.00)	1 (1.00)	0.277 (1.00)	0.394 (1.00)	0.407 (1.00)	0.285 (1.00)	0.531 (1.00)	0.0427 (1.00)	0.446 (1.00)	0.0611 (1.00)
L1TD1	16 (6%)	232			0.0133 (1.00)	0.147 (1.00)	0.0744 (1.00)	0.974 (1.00)	0.424 (1.00)	0.0935 (1.00)	0.842 (1.00)	0.43 (1.00)	0.718 (1.00)	0.214 (1.00)
MARK3	11 (4%)	237	0.134 (1.00)	0.091 (1.00)	0.0246 (1.00)	0.0376 (1.00)	0.0405 (1.00)	0.616 (1.00)	0.55 (1.00)	0.0635 (1.00)	0.192 (1.00)	0.00427 (1.00)
CTNND1	19 (8%)	229	0.288 (1.00)	0.398 (1.00)	0.0355 (1.00)	1 (1.00)	0.0139 (1.00)	0.717 (1.00)	0.603 (1.00)	0.296 (1.00)	0.91 (1.00)	0.09 (1.00)	0.359 (1.00)	0.517 (1.00)
GFAP	9 (4%)	239			0.0294 (1.00)	0.443 (1.00)	0.328 (1.00)	0.663 (1.00)	0.0697 (1.00)	0.502 (1.00)	0.395 (1.00)	0.0377 (1.00)	0.795 (1.00)	0.121 (1.00)
PPP2R1A	27 (11%)	221	0.0755 (1.00)	0.0567 (1.00)	0.043 (1.00)	0.0142 (1.00)	0.192 (1.00)	0.837 (1.00)	0.00223 (1.00)	0.00222 (1.00)	0.0144 (1.00)	0.00081 (1.00)	0.0947 (1.00)	0.121 (1.00)
C9ORF102	16 (6%)	232	0.537 (1.00)	0.25 (1.00)	0.0127 (1.00)	0.632 (1.00)	0.801 (1.00)	0.952 (1.00)	0.172 (1.00)	0.0394 (1.00)	0.0904 (1.00)	0.212 (1.00)	1 (1.00)	0.541 (1.00)
EIF4A2	7 (3%)	241			0.182 (1.00)	0.779 (1.00)	0.713 (1.00)	0.532 (1.00)	0.0637 (1.00)	0.0509 (1.00)	0.0321 (1.00)	0.245 (1.00)	0.446 (1.00)	0.12 (1.00)
ZNF471	15 (6%)	233	0.684 (1.00)	0.0914 (1.00)	0.0454 (1.00)	0.559 (1.00)	0.566 (1.00)	0.843 (1.00)	0.48 (1.00)	0.0171 (1.00)	0.181 (1.00)	0.0855 (1.00)	0.864 (1.00)	0.568 (1.00)
CDK17	14 (6%)	234	0.0462 (1.00)	0.00259 (1.00)	0.0646 (1.00)	0.0604 (1.00)	0.807 (1.00)	0.86 (1.00)	0.88 (1.00)	1 (1.00)	0.7 (1.00)	0.0354 (1.00)	1 (1.00)	0.571 (1.00)
SIN3A	21 (8%)	227			0.02 (1.00)	0.331 (1.00)	0.00415 (1.00)	0.494 (1.00)	0.0213 (1.00)	0.00143 (1.00)	0.0313 (1.00)	0.00517 (1.00)	0.516 (1.00)	0.273 (1.00)
ZNF485	9 (4%)	239	1 (1.00)	0.0792 (1.00)	0.275 (1.00)	1 (1.00)	0.362 (1.00)	0.695 (1.00)	0.705 (1.00)	1 (1.00)	0.395 (1.00)	0.701 (1.00)	0.445 (1.00)	0.335 (1.00)
RSBN1L	12 (5%)	236	0.133 (1.00)	0.0925 (1.00)	0.0826 (1.00)	0.556 (1.00)	0.00692 (1.00)	0.744 (1.00)	0.323 (1.00)	0.112 (1.00)	0.39 (1.00)	0.631 (1.00)
CUX1	23 (9%)	225	0.823 (1.00)	0.581 (1.00)	0.00661 (1.00)	0.264 (1.00)	0.952 (1.00)	0.311 (1.00)	0.334 (1.00)	0.227 (1.00)	0.845 (1.00)	0.566 (1.00)	0.923 (1.00)	0.715 (1.00)
BCOR	30 (12%)	218	0.688 (1.00)	0.204 (1.00)	0.00041 (0.862)	0.0161 (1.00)	0.524 (1.00)	0.659 (1.00)	0.0317 (1.00)	0.00504 (1.00)	0.658 (1.00)	0.449 (1.00)	0.93 (1.00)	0.0272 (1.00)
WDR45	11 (4%)	237			0.308 (1.00)	0.58 (1.00)	0.0376 (1.00)	0.768 (1.00)	0.862 (1.00)	0.577 (1.00)	0.192 (1.00)	0.116 (1.00)	0.257 (1.00)	1 (1.00)
CAB39L	8 (3%)	240			0.18 (1.00)		0.0954 (1.00)	0.752 (1.00)	0.737 (1.00)	0.0472 (1.00)	0.198 (1.00)	0.197 (1.00)
TAB3	18 (7%)	230	0.133 (1.00)	0.0924 (1.00)	0.0204 (1.00)	0.28 (1.00)	0.692 (1.00)	0.439 (1.00)	0.0598 (1.00)	0.0336 (1.00)	0.456 (1.00)	0.213 (1.00)	0.681 (1.00)	0.531 (1.00)
OAZ3	8 (3%)	240			0.0646 (1.00)	0.557 (1.00)	0.429 (1.00)	0.354 (1.00)	0.0667 (1.00)	0.0228 (1.00)	0.198 (1.00)	0.12 (1.00)
AHCYL1	6 (2%)	242			0.18 (1.00)	1 (1.00)	0.514 (1.00)	0.84 (1.00)	1 (1.00)	0.493 (1.00)	0.677 (1.00)	0.263 (1.00)
ATM	29 (12%)	219	0.0113 (1.00)	0.00031 (0.652)	0.00025 (0.526)	0.691 (1.00)	0.186 (1.00)	0.328 (1.00)	0.721 (1.00)	0.0816 (1.00)	0.42 (1.00)	0.0183 (1.00)	1 (1.00)	0.337 (1.00)
MSH4	15 (6%)	233	0.684 (1.00)	0.0916 (1.00)	0.0161 (1.00)	0.877 (1.00)	0.415 (1.00)	0.727 (1.00)	0.896 (1.00)	0.233 (1.00)	0.399 (1.00)	0.337 (1.00)	1 (1.00)	0.537 (1.00)
FAM65B	16 (6%)	232			0.00239 (1.00)	0.324 (1.00)	0.207 (1.00)	0.653 (1.00)	0.585 (1.00)	0.338 (1.00)	0.945 (1.00)	0.0256 (1.00)	0.631 (1.00)	0.215 (1.00)
FN1	24 (10%)	224	0.184 (1.00)	0.0598 (1.00)	0.00523 (1.00)	0.411 (1.00)	0.302 (1.00)	0.898 (1.00)	0.333 (1.00)	0.0737 (1.00)	0.331 (1.00)	0.0122 (1.00)	0.713 (1.00)	0.925 (1.00)
JAKMIP2	12 (5%)	236	0.382 (1.00)	0.281 (1.00)	0.0317 (1.00)	0.558 (1.00)	0.0342 (1.00)	0.765 (1.00)	0.0736 (1.00)	0.0637 (1.00)	0.0866 (1.00)	0.241 (1.00)
WBP4	8 (3%)	240			0.181 (1.00)	0.107 (1.00)	0.262 (1.00)	0.914 (1.00)	0.401 (1.00)	0.166 (1.00)	0.068 (1.00)	0.0868 (1.00)	0.26 (1.00)	0.121 (1.00)
RASA1	22 (9%)	226	0.383 (1.00)	0.364 (1.00)	0.104 (1.00)	0.43 (1.00)	0.419 (1.00)	0.812 (1.00)	0.921 (1.00)	0.737 (1.00)	0.604 (1.00)	0.545 (1.00)	0.896 (1.00)	0.519 (1.00)
ALPK2	19 (8%)	229	0.0313 (1.00)	0.0147 (1.00)	0.0159 (1.00)	0.426 (1.00)	0.787 (1.00)	0.49 (1.00)	0.256 (1.00)	0.46 (1.00)	0.361 (1.00)	0.625 (1.00)	0.61 (1.00)	0.403 (1.00)
POLE	27 (11%)	221	0.735 (1.00)	0.0607 (1.00)	0.00644 (1.00)	0.255 (1.00)	0.329 (1.00)	0.904 (1.00)	0.935 (1.00)	0.193 (1.00)	0.812 (1.00)	0.111 (1.00)	1 (1.00)	0.516 (1.00)
KIF20B	21 (8%)	227	0.288 (1.00)	0.0457 (1.00)	0.00378 (1.00)	0.801 (1.00)	0.498 (1.00)	0.966 (1.00)	0.606 (1.00)	0.0324 (1.00)	0.491 (1.00)	0.127 (1.00)	0.905 (1.00)	0.112 (1.00)
C14ORF166B	10 (4%)	238			0.0285 (1.00)	0.0126 (1.00)	0.0268 (1.00)	0.578 (1.00)	1 (1.00)	0.167 (1.00)	0.635 (1.00)	0.5 (1.00)	0.142 (1.00)	0.833 (1.00)
SLC26A8	12 (5%)	236			0.0261 (1.00)	0.637 (1.00)	0.11 (1.00)	0.858 (1.00)	0.323 (1.00)	0.113 (1.00)	0.253 (1.00)	0.198 (1.00)	0.851 (1.00)	0.244 (1.00)
ZNF334	17 (7%)	231	1 (1.00)	0.0782 (1.00)	0.0559 (1.00)	0.376 (1.00)	0.335 (1.00)	0.437 (1.00)	0.399 (1.00)	0.897 (1.00)	0.949 (1.00)	0.637 (1.00)	0.818 (1.00)	0.452 (1.00)
RRAS2	4 (2%)	244			0.0129 (1.00)		0.235 (1.00)	0.257 (1.00)	0.171 (1.00)	0.82 (1.00)	0.465 (1.00)	0.909 (1.00)
PPM1N	7 (3%)	241	0.381 (1.00)	0.284 (1.00)	0.468 (1.00)	1 (1.00)	0.57 (1.00)	0.582 (1.00)	0.0632 (1.00)	0.384 (1.00)	0.342 (1.00)	0.243 (1.00)	0.795 (1.00)	0.343 (1.00)
FCN1	8 (3%)	240			0.181 (1.00)	0.445 (1.00)	0.447 (1.00)	0.635 (1.00)	0.406 (1.00)	0.66 (1.00)	1 (1.00)	0.777 (1.00)	1 (1.00)	0.0381 (1.00)
TIAL1	10 (4%)	238	0.381 (1.00)	0.0789 (1.00)	0.136 (1.00)	0.108 (1.00)	0.445 (1.00)	0.0508 (1.00)	0.0776 (1.00)	0.342 (1.00)	0.722 (1.00)	0.389 (1.00)	0.303 (1.00)	0.0516 (1.00)
PSMC4	11 (4%)	237			0.135 (1.00)	0.445 (1.00)	0.109 (1.00)	0.695 (1.00)	0.264 (1.00)	0.35 (1.00)	0.787 (1.00)	0.0936 (1.00)	0.56 (1.00)	0.0545 (1.00)
MFAP5	9 (4%)	239			0.154 (1.00)	0.516 (1.00)	0.0042 (1.00)	0.96 (1.00)	0.705 (1.00)	0.387 (1.00)	0.2 (1.00)	0.22 (1.00)	0.142 (1.00)	0.119 (1.00)
RAB3GAP1	16 (6%)	232	1 (1.00)	0.0768 (1.00)	0.0271 (1.00)	0.342 (1.00)	0.186 (1.00)	0.819 (1.00)	0.801 (1.00)	0.789 (1.00)	0.671 (1.00)	0.294 (1.00)	1 (1.00)	0.0791 (1.00)
MSH6	17 (7%)	231	0.382 (1.00)	0.28 (1.00)	0.00092 (1.00)	0.632 (1.00)	0.172 (1.00)	0.978 (1.00)	0.36 (1.00)	0.243 (1.00)	0.495 (1.00)	0.0918 (1.00)	1 (1.00)	0.541 (1.00)
BMP2K	13 (5%)	235	0.133 (1.00)	0.0921 (1.00)	0.0647 (1.00)	0.261 (1.00)	0.927 (1.00)	1 (1.00)	0.436 (1.00)	0.418 (1.00)	0.175 (1.00)	0.679 (1.00)	0.174 (1.00)	0.694 (1.00)
ZNF606	16 (6%)	232	0.132 (1.00)	0.092 (1.00)	0.0129 (1.00)	0.188 (1.00)	0.747 (1.00)	0.931 (1.00)	0.808 (1.00)	0.673 (1.00)	0.945 (1.00)	0.623 (1.00)	0.479 (1.00)	0.571 (1.00)
ZNF263	7 (3%)	241			0.467 (1.00)	0.388 (1.00)	0.769 (1.00)	0.898 (1.00)	0.511 (1.00)	0.331 (1.00)	0.204 (1.00)	0.102 (1.00)	0.44 (1.00)	0.17 (1.00)
CHEK2	13 (5%)	235	0.687 (1.00)	0.204 (1.00)	0.0704 (1.00)	0.28 (1.00)	0.162 (1.00)	0.842 (1.00)	0.199 (1.00)	0.0615 (1.00)	0.174 (1.00)	0.519 (1.00)	0.442 (1.00)	1 (1.00)
MGA	26 (10%)	222	0.325 (1.00)	0.364 (1.00)	0.196 (1.00)	0.872 (1.00)	0.107 (1.00)	0.337 (1.00)	0.0378 (1.00)	0.0395 (1.00)	0.105 (1.00)	0.0515 (1.00)	0.346 (1.00)	0.0388 (1.00)
RHBDD3	4 (2%)	244			0.759 (1.00)	0.112 (1.00)	0.9 (1.00)	0.629 (1.00)	0.274 (1.00)	0.569 (1.00)	0.688 (1.00)	0.179 (1.00)	0.793 (1.00)	0.12 (1.00)
TAP1	8 (3%)	240			0.0292 (1.00)	0.78 (1.00)	0.831 (1.00)	0.802 (1.00)	0.124 (1.00)	0.331 (1.00)	0.342 (1.00)	0.0865 (1.00)
RB1	20 (8%)	228	0.639 (1.00)	0.00572 (1.00)	0.18 (1.00)	0.252 (1.00)	0.159 (1.00)	0.495 (1.00)	0.473 (1.00)	0.129 (1.00)	0.36 (1.00)	0.0912 (1.00)	1 (1.00)	0.0812 (1.00)
SLC1A3	12 (5%)	236			0.127 (1.00)	0.668 (1.00)	0.0298 (1.00)	0.636 (1.00)	0.166 (1.00)	0.929 (1.00)	0.316 (1.00)	0.143 (1.00)	0.559 (1.00)	0.19 (1.00)
ATAD5	17 (7%)	231			0.0508 (1.00)	0.322 (1.00)	0.489 (1.00)	0.653 (1.00)	0.778 (1.00)	0.103 (1.00)	0.552 (1.00)	0.255 (1.00)	0.682 (1.00)	0.533 (1.00)
ALG8	10 (4%)	238	1 (1.00)	0.206 (1.00)	0.325 (1.00)	0.0369 (1.00)	0.613 (1.00)	0.47 (1.00)	0.616 (1.00)	0.603 (1.00)	0.85 (1.00)	0.683 (1.00)	1 (1.00)	1 (1.00)
TIGD4	13 (5%)	235	0.905 (1.00)	0.586 (1.00)	0.364 (1.00)	0.877 (1.00)	0.0138 (1.00)	0.543 (1.00)	0.353 (1.00)	0.0613 (1.00)	0.139 (1.00)	0.519 (1.00)	0.851 (1.00)	0.24 (1.00)
PARG	9 (4%)	239			0.0167 (1.00)	0.877 (1.00)	0.256 (1.00)	0.73 (1.00)	0.179 (1.00)	0.333 (1.00)	0.158 (1.00)	0.174 (1.00)	0.562 (1.00)	0.0566 (1.00)
FAT1	40 (16%)	208	0.00606 (1.00)	0.00135 (1.00)	0.028 (1.00)	0.00645 (1.00)	0.269 (1.00)	0.164 (1.00)	0.191 (1.00)	0.041 (1.00)	0.377 (1.00)	0.0349 (1.00)	0.945 (1.00)	0.221 (1.00)
DYM	10 (4%)	238			0.245 (1.00)	0.28 (1.00)	0.469 (1.00)	0.419 (1.00)	0.721 (1.00)	1 (1.00)	1 (1.00)	0.112 (1.00)	0.605 (1.00)	0.109 (1.00)
PSMD3	11 (4%)	237	0.688 (1.00)	0.205 (1.00)	0.136 (1.00)	0.518 (1.00)	0.32 (1.00)	0.738 (1.00)	0.506 (1.00)	0.623 (1.00)	0.394 (1.00)	0.759 (1.00)	0.559 (1.00)	0.546 (1.00)
PPM1D	11 (4%)	237	0.382 (1.00)	0.282 (1.00)	0.116 (1.00)	0.151 (1.00)	0.246 (1.00)	0.745 (1.00)	0.368 (1.00)	0.0291 (1.00)	0.51 (1.00)	0.193 (1.00)	0.559 (1.00)	0.547 (1.00)
ZMYM2	17 (7%)	231	0.38 (1.00)	0.0776 (1.00)	0.0558 (1.00)	1 (1.00)	0.461 (1.00)	0.843 (1.00)	0.274 (1.00)	0.244 (1.00)	0.852 (1.00)	0.136 (1.00)	0.307 (1.00)	0.108 (1.00)
INPP4B	12 (5%)	236	0.457 (1.00)	0.0765 (1.00)	0.115 (1.00)		0.0281 (1.00)	0.207 (1.00)	1 (1.00)	0.0711 (1.00)	0.638 (1.00)	0.629 (1.00)
USP28	10 (4%)	238			0.138 (1.00)	0.188 (1.00)	0.892 (1.00)	0.683 (1.00)	0.356 (1.00)	0.602 (1.00)	1 (1.00)	0.0596 (1.00)	0.812 (1.00)	0.172 (1.00)
EMR1	13 (5%)	235	0.685 (1.00)	0.0918 (1.00)	0.119 (1.00)	0.282 (1.00)	0.305 (1.00)	0.891 (1.00)	0.639 (1.00)	0.309 (1.00)	0.616 (1.00)	0.341 (1.00)	1 (1.00)	0.042 (1.00)
ZNF385B	7 (3%)	241			0.181 (1.00)	0.734 (1.00)	0.134 (1.00)	0.848 (1.00)	0.312 (1.00)	0.288 (1.00)	0.68 (1.00)	0.945 (1.00)	0.598 (1.00)	1 (1.00)
RAE1	11 (4%)	237	0.458 (1.00)	0.0776 (1.00)	0.0719 (1.00)	0.185 (1.00)	0.268 (1.00)	0.227 (1.00)	0.508 (1.00)	0.425 (1.00)	0.508 (1.00)	0.12 (1.00)	0.851 (1.00)	0.54 (1.00)
TRIM59	9 (4%)	239			0.0557 (1.00)	0.86 (1.00)	0.139 (1.00)	0.326 (1.00)	0.641 (1.00)	0.203 (1.00)	0.605 (1.00)	0.233 (1.00)	0.26 (1.00)	0.123 (1.00)
ZNF721	13 (5%)	235	1 (1.00)	0.0784 (1.00)	0.022 (1.00)	0.632 (1.00)	0.0443 (1.00)	0.765 (1.00)	0.521 (1.00)	0.31 (1.00)	0.426 (1.00)	0.795 (1.00)	1 (1.00)	0.733 (1.00)
MCTP1	13 (5%)	235	0.379 (1.00)	0.227 (1.00)	0.259 (1.00)	0.669 (1.00)	0.307 (1.00)	0.858 (1.00)	0.518 (1.00)	0.506 (1.00)	0.176 (1.00)	0.796 (1.00)	0.344 (1.00)	0.0378 (1.00)
ZNF774	10 (4%)	238			0.626 (1.00)	0.667 (1.00)	0.435 (1.00)	0.922 (1.00)	0.568 (1.00)	0.655 (1.00)	0.436 (1.00)	0.389 (1.00)	0.657 (1.00)	0.189 (1.00)
FAM9A	14 (6%)	234			0.465 (1.00)	0.0679 (1.00)	0.192 (1.00)	0.535 (1.00)	0.0725 (1.00)	0.278 (1.00)	0.784 (1.00)	0.17 (1.00)	0.0217 (1.00)	0.0187 (1.00)
CFP	8 (3%)	240			0.18 (1.00)	1 (1.00)	0.156 (1.00)	0.51 (1.00)	0.403 (1.00)	1 (1.00)	0.738 (1.00)	0.666 (1.00)	0.302 (1.00)	0.54 (1.00)
PER3	12 (5%)	236			0.0266 (1.00)	0.133 (1.00)	0.192 (1.00)	0.764 (1.00)	0.0748 (1.00)	0.111 (1.00)	0.684 (1.00)	0.239 (1.00)	0.85 (1.00)	0.00536 (1.00)
ZRANB3	8 (3%)	240	0.688 (1.00)	0.207 (1.00)	0.178 (1.00)		0.441 (1.00)	0.557 (1.00)	0.0934 (1.00)	0.023 (1.00)	0.0563 (1.00)	0.0696 (1.00)
OMA1	10 (4%)	238			0.0298 (1.00)	0.509 (1.00)	0.236 (1.00)	0.854 (1.00)	1 (1.00)	0.169 (1.00)	0.369 (1.00)	0.206 (1.00)	0.245 (1.00)	0.732 (1.00)
CLDN15	5 (2%)	243			0.558 (1.00)	0.31 (1.00)	0.654 (1.00)	0.692 (1.00)	0.133 (1.00)	0.316 (1.00)	0.328 (1.00)	0.0604 (1.00)	0.795 (1.00)	0.119 (1.00)
TTC39C	7 (3%)	241	0.689 (1.00)	0.207 (1.00)	0.184 (1.00)		0.0862 (1.00)	0.559 (1.00)	0.457 (1.00)	0.0943 (1.00)	0.289 (1.00)	0.558 (1.00)
TXNRD1	8 (3%)	240	0.688 (1.00)	0.204 (1.00)	0.332 (1.00)	0.384 (1.00)	0.448 (1.00)	0.765 (1.00)	0.404 (1.00)	0.427 (1.00)	0.196 (1.00)	0.0351 (1.00)
MECOM	12 (5%)	236	0.537 (1.00)	0.047 (1.00)	0.257 (1.00)	0.559 (1.00)	0.502 (1.00)	0.0933 (1.00)	0.637 (1.00)	0.457 (1.00)	0.288 (1.00)	0.973 (1.00)	0.172 (1.00)	0.691 (1.00)
CCDC147	15 (6%)	233	0.685 (1.00)	0.0922 (1.00)	0.0459 (1.00)	0.656 (1.00)	0.153 (1.00)	0.923 (1.00)	0.569 (1.00)	0.455 (1.00)	0.698 (1.00)	0.198 (1.00)	1 (1.00)	0.052 (1.00)
SACS	26 (10%)	222	0.0212 (1.00)	0.00149 (1.00)	0.00195 (1.00)	0.683 (1.00)	0.0794 (1.00)	0.59 (1.00)	0.339 (1.00)	0.119 (1.00)	0.185 (1.00)	0.373 (1.00)	0.237 (1.00)	0.563 (1.00)
MUTED	7 (3%)	241			0.183 (1.00)	0.628 (1.00)	0.0275 (1.00)	0.0794 (1.00)	0.706 (1.00)	0.254 (1.00)	0.385 (1.00)	1 (1.00)	0.315 (1.00)	0.615 (1.00)
SLC44A3	6 (2%)	242			0.18 (1.00)	0.684 (1.00)	0.693 (1.00)	0.466 (1.00)	1 (1.00)	0.495 (1.00)	0.677 (1.00)	0.64 (1.00)
ZNF674	14 (6%)	234			0.0646 (1.00)	0.878 (1.00)	0.0675 (1.00)	0.849 (1.00)	0.212 (1.00)	0.126 (1.00)	0.142 (1.00)	0.12 (1.00)	1 (1.00)	0.544 (1.00)
CCDC144A	18 (7%)	230	0.808 (1.00)	0.0942 (1.00)	0.0416 (1.00)	0.426 (1.00)	0.173 (1.00)	0.67 (1.00)	0.648 (1.00)	0.178 (1.00)	0.191 (1.00)	0.237 (1.00)	0.683 (1.00)	0.531 (1.00)
OR8B8	7 (3%)	241			0.0311 (1.00)	0.777 (1.00)	0.35 (1.00)	0.932 (1.00)	0.312 (1.00)	0.617 (1.00)	0.388 (1.00)	0.234 (1.00)
LNX2	14 (6%)	234	0.383 (1.00)	0.281 (1.00)	0.0177 (1.00)	0.00257 (1.00)	0.833 (1.00)	1 (1.00)	0.0258 (1.00)	0.0142 (1.00)	0.181 (1.00)	0.213 (1.00)	1 (1.00)	0.544 (1.00)
TMEM62	9 (4%)	239			0.153 (1.00)	0.78 (1.00)	0.588 (1.00)	0.804 (1.00)	0.141 (1.00)	0.109 (1.00)	0.607 (1.00)	0.11 (1.00)	0.599 (1.00)	1 (1.00)
ATF7IP	17 (7%)	231	0.199 (1.00)	0.0234 (1.00)	0.0271 (1.00)	0.0934 (1.00)	0.724 (1.00)	0.947 (1.00)	0.552 (1.00)	0.599 (1.00)	1 (1.00)	0.173 (1.00)	0.507 (1.00)	0.0266 (1.00)
IL20	7 (3%)	241	0.132 (1.00)	0.0929 (1.00)	0.182 (1.00)		0.247 (1.00)	0.934 (1.00)	0.639 (1.00)	0.00714 (1.00)	0.291 (1.00)	0.0558 (1.00)
C3AR1	8 (3%)	240	0.383 (1.00)	0.281 (1.00)	0.383 (1.00)		0.175 (1.00)	0.165 (1.00)	0.497 (1.00)	0.247 (1.00)	0.633 (1.00)	0.568 (1.00)
PKD2	8 (3%)	240	1 (1.00)	0.914 (1.00)	0.088 (1.00)		0.188 (1.00)	0.868 (1.00)	1 (1.00)	0.301 (1.00)	0.714 (1.00)	0.45 (1.00)
BMP5	13 (5%)	235	0.808 (1.00)	0.0917 (1.00)	0.117 (1.00)	1 (1.00)	0.219 (1.00)	0.304 (1.00)	0.881 (1.00)	0.309 (1.00)	0.657 (1.00)	0.518 (1.00)	0.685 (1.00)	0.359 (1.00)
OR52I2	8 (3%)	240	0.686 (1.00)	0.533 (1.00)	0.327 (1.00)	0.0384 (1.00)	0.718 (1.00)	0.499 (1.00)	0.157 (1.00)	0.66 (1.00)	0.799 (1.00)	0.362 (1.00)	1 (1.00)	1 (1.00)
C1ORF100	9 (4%)	239	0.383 (1.00)	0.286 (1.00)	0.00305 (1.00)	1 (1.00)	0.718 (1.00)	0.263 (1.00)	0.279 (1.00)	0.163 (1.00)	0.104 (1.00)	0.413 (1.00)
CCDC160	11 (4%)	237	0.687 (1.00)	0.205 (1.00)	0.114 (1.00)	1 (1.00)	0.815 (1.00)	0.719 (1.00)	0.553 (1.00)	0.349 (1.00)	0.919 (1.00)	0.469 (1.00)	0.442 (1.00)	0.831 (1.00)
NAA15	14 (6%)	234	0.536 (1.00)	0.247 (1.00)	0.0645 (1.00)	0.1 (1.00)	0.152 (1.00)	0.4 (1.00)	0.115 (1.00)	0.126 (1.00)	0.212 (1.00)	0.381 (1.00)	0.158 (1.00)	0.0392 (1.00)
RNF31	17 (7%)	231	0.385 (1.00)	0.05 (1.00)	0.0374 (1.00)	0.485 (1.00)	0.0729 (1.00)	0.297 (1.00)	0.0788 (1.00)	0.0641 (1.00)	0.0147 (1.00)	0.067 (1.00)	0.151 (1.00)	0.0959 (1.00)
NFE2L3	12 (5%)	236			0.473 (1.00)	0.0333 (1.00)	0.39 (1.00)	0.857 (1.00)	0.0436 (1.00)	0.385 (1.00)	0.228 (1.00)	0.236 (1.00)	0.507 (1.00)	0.187 (1.00)
ZKSCAN1	7 (3%)	241			0.47 (1.00)	0.443 (1.00)	0.152 (1.00)	0.311 (1.00)	0.456 (1.00)	1 (1.00)	0.8 (1.00)	0.303 (1.00)	0.85 (1.00)	0.54 (1.00)
CDKL1	7 (3%)	241			0.182 (1.00)	0.684 (1.00)	0.399 (1.00)	0.869 (1.00)	0.8 (1.00)	0.289 (1.00)	0.683 (1.00)	0.36 (1.00)	0.441 (1.00)	0.833 (1.00)
ERBB3	17 (7%)	231			0.0947 (1.00)	0.488 (1.00)	0.438 (1.00)	0.881 (1.00)	0.208 (1.00)	0.244 (1.00)	0.857 (1.00)	0.782 (1.00)	0.634 (1.00)	1 (1.00)
SELP	9 (4%)	239	0.381 (1.00)	0.281 (1.00)	0.197 (1.00)		0.263 (1.00)	1 (1.00)	0.369 (1.00)	0.316 (1.00)	0.251 (1.00)	0.664 (1.00)
PPIG	16 (6%)	232	0.193 (1.00)	0.0916 (1.00)	0.046 (1.00)	1 (1.00)	0.732 (1.00)	0.955 (1.00)	0.173 (1.00)	0.14 (1.00)	0.263 (1.00)	0.448 (1.00)	1 (1.00)	0.112 (1.00)
GPRASP1	21 (8%)	227	0.29 (1.00)	0.0448 (1.00)	0.0526 (1.00)	0.629 (1.00)	0.343 (1.00)	1 (1.00)	1 (1.00)	0.301 (1.00)	0.431 (1.00)	0.934 (1.00)	0.718 (1.00)	1 (1.00)
REV3L	20 (8%)	228	0.381 (1.00)	0.282 (1.00)	0.0116 (1.00)	0.331 (1.00)	0.543 (1.00)	1 (1.00)	0.566 (1.00)	0.0439 (1.00)	0.6 (1.00)	0.0548 (1.00)	0.712 (1.00)	0.257 (1.00)
CTNNA1	13 (5%)	235			0.26 (1.00)	0.669 (1.00)	0.194 (1.00)	0.9 (1.00)	0.378 (1.00)	0.507 (1.00)	0.87 (1.00)	0.808 (1.00)	0.66 (1.00)	0.758 (1.00)
MRPL47	6 (2%)	242	0.685 (1.00)	0.533 (1.00)	1 (1.00)	0.779 (1.00)	0.584 (1.00)	0.807 (1.00)	0.609 (1.00)	0.873 (1.00)	1 (1.00)	0.371 (1.00)	1 (1.00)	0.337 (1.00)
DEPDC1B	11 (4%)	237	0.688 (1.00)	0.205 (1.00)	0.201 (1.00)	0.666 (1.00)	0.0222 (1.00)	0.408 (1.00)	0.29 (1.00)	1 (1.00)	0.786 (1.00)	0.667 (1.00)	0.562 (1.00)	0.57 (1.00)
CASP8	17 (7%)	231	0.382 (1.00)	0.0787 (1.00)	0.0507 (1.00)	0.256 (1.00)	0.154 (1.00)	1 (1.00)	0.633 (1.00)	0.529 (1.00)	0.469 (1.00)	0.639 (1.00)	0.363 (1.00)	0.536 (1.00)
CACNB4	10 (4%)	238			0.00387 (1.00)	0.556 (1.00)	0.671 (1.00)	1 (1.00)	0.436 (1.00)	0.551 (1.00)	0.552 (1.00)	0.234 (1.00)	1 (1.00)	0.169 (1.00)
BHLHB9	8 (3%)	240			0.177 (1.00)	1 (1.00)	0.961 (1.00)	0.507 (1.00)	0.123 (1.00)	0.426 (1.00)	0.249 (1.00)	0.188 (1.00)	0.444 (1.00)	0.341 (1.00)
C22ORF25	6 (2%)	242			0.532 (1.00)		1 (1.00)	0.613 (1.00)	0.0407 (1.00)	0.0946 (1.00)	0.0676 (1.00)	0.41 (1.00)
GALNT7	11 (4%)	237	0.684 (1.00)	0.0923 (1.00)	0.314 (1.00)	0.777 (1.00)	0.718 (1.00)	0.729 (1.00)	0.368 (1.00)	0.195 (1.00)	0.249 (1.00)	0.0348 (1.00)	1 (1.00)	0.341 (1.00)
LGMN	7 (3%)	241	0.382 (1.00)	0.0793 (1.00)	0.183 (1.00)		0.0182 (1.00)	0.844 (1.00)	0.146 (1.00)	0.382 (1.00)	0.517 (1.00)	0.409 (1.00)
EPS8	12 (5%)	236			0.309 (1.00)	0.32 (1.00)	0.813 (1.00)	0.966 (1.00)	0.509 (1.00)	0.421 (1.00)	0.138 (1.00)	0.412 (1.00)	1 (1.00)	0.758 (1.00)
TGOLN2	3 (1%)	245			0.72 (1.00)		0.311 (1.00)	0.59 (1.00)	0.21 (1.00)	1 (1.00)	1 (1.00)	0.323 (1.00)
TPX2	6 (2%)	242			0.18 (1.00)	0.825 (1.00)	0.425 (1.00)	0.356 (1.00)	0.106 (1.00)	0.206 (1.00)	0.0649 (1.00)	0.41 (1.00)	0.141 (1.00)	0.12 (1.00)
C14ORF118	15 (6%)	233	0.682 (1.00)	0.0917 (1.00)	0.0549 (1.00)	0.623 (1.00)	0.0862 (1.00)	0.266 (1.00)	0.753 (1.00)	0.625 (1.00)	0.738 (1.00)	0.73 (1.00)	1 (1.00)	0.891 (1.00)
SLC34A3	6 (2%)	242			0.181 (1.00)	0.444 (1.00)	0.458 (1.00)	1 (1.00)	0.45 (1.00)	1 (1.00)	0.448 (1.00)	0.0328 (1.00)	0.428 (1.00)	0.0414 (1.00)
ZNF662	13 (5%)	235	0.382 (1.00)	0.283 (1.00)	0.0692 (1.00)	0.136 (1.00)	0.782 (1.00)	0.455 (1.00)	0.0741 (1.00)	0.215 (1.00)	0.658 (1.00)	0.0667 (1.00)	1 (1.00)	0.0515 (1.00)
ZDBF2	18 (7%)	230	0.371 (1.00)	0.11 (1.00)	0.0191 (1.00)	0.783 (1.00)	0.56 (1.00)	0.963 (1.00)	0.0781 (1.00)	0.177 (1.00)	0.319 (1.00)	0.0696 (1.00)	0.896 (1.00)	0.239 (1.00)
SFRP4	8 (3%)	240	0.381 (1.00)	0.283 (1.00)	0.0288 (1.00)	0.461 (1.00)	0.445 (1.00)	0.356 (1.00)	0.179 (1.00)	0.331 (1.00)	0.341 (1.00)	0.567 (1.00)
CCDC146	14 (6%)	234	0.904 (1.00)	0.0488 (1.00)	0.0177 (1.00)	0.632 (1.00)	0.119 (1.00)	0.852 (1.00)	0.583 (1.00)	0.11 (1.00)	0.277 (1.00)	0.12 (1.00)	1 (1.00)	0.239 (1.00)
C7ORF60	10 (4%)	238	0.381 (1.00)	0.278 (1.00)	0.245 (1.00)	1 (1.00)	0.758 (1.00)	0.926 (1.00)	0.264 (1.00)	0.219 (1.00)	0.102 (1.00)	0.212 (1.00)	0.561 (1.00)	0.124 (1.00)
ZNF649	14 (6%)	234	0.535 (1.00)	0.248 (1.00)	0.0766 (1.00)	1 (1.00)	0.757 (1.00)	1 (1.00)	0.943 (1.00)	0.777 (1.00)	0.459 (1.00)	0.941 (1.00)	1 (1.00)	0.571 (1.00)
RASSF9	9 (4%)	239			0.181 (1.00)	0.78 (1.00)	0.718 (1.00)	1 (1.00)	0.708 (1.00)	0.107 (1.00)	0.222 (1.00)	0.0875 (1.00)
NIPA2	8 (3%)	240			0.386 (1.00)	0.824 (1.00)	0.256 (1.00)	0.868 (1.00)	1 (1.00)	0.905 (1.00)	0.737 (1.00)	0.388 (1.00)	0.445 (1.00)	1 (1.00)
FILIP1	16 (6%)	232	0.536 (1.00)	0.246 (1.00)	0.0559 (1.00)	0.386 (1.00)	0.0194 (1.00)	0.932 (1.00)	0.809 (1.00)	0.161 (1.00)	0.843 (1.00)	0.626 (1.00)	1 (1.00)	0.877 (1.00)
PHKA2	16 (6%)	232	1 (1.00)	0.672 (1.00)	0.016 (1.00)	0.188 (1.00)	0.808 (1.00)	0.405 (1.00)	0.174 (1.00)	0.0708 (1.00)	0.0517 (1.00)	0.00473 (1.00)	1 (1.00)	0.538 (1.00)
COBLL1	15 (6%)	233	0.534 (1.00)	0.248 (1.00)	0.208 (1.00)	0.138 (1.00)	0.802 (1.00)	0.954 (1.00)	0.222 (1.00)	0.222 (1.00)	0.18 (1.00)	0.269 (1.00)	1 (1.00)	0.573 (1.00)
AGPAT9	8 (3%)	240			0.385 (1.00)	0.114 (1.00)	0.129 (1.00)	0.412 (1.00)	0.0305 (1.00)	0.245 (1.00)	1 (1.00)	0.775 (1.00)
NOP56	11 (4%)	237			0.0245 (1.00)	0.635 (1.00)	0.00986 (1.00)	0.457 (1.00)	0.266 (1.00)	1 (1.00)	0.504 (1.00)	0.182 (1.00)	0.562 (1.00)	0.545 (1.00)
RBL2	12 (5%)	236	0.535 (1.00)	0.248 (1.00)	0.0252 (1.00)	0.86 (1.00)	0.544 (1.00)	0.579 (1.00)	0.406 (1.00)	0.0108 (1.00)	0.139 (1.00)	0.248 (1.00)	0.259 (1.00)	0.222 (1.00)
ABCC6	12 (5%)	236	0.683 (1.00)	0.00891 (1.00)	0.159 (1.00)	0.86 (1.00)	0.0781 (1.00)	0.534 (1.00)	0.608 (1.00)	0.45 (1.00)	0.287 (1.00)	0.655 (1.00)	0.44 (1.00)	1 (1.00)
CCDC104	10 (4%)	238			0.029 (1.00)	0.152 (1.00)	0.0761 (1.00)	0.634 (1.00)	0.924 (1.00)	0.549 (1.00)	0.763 (1.00)	0.394 (1.00)	0.314 (1.00)	0.789 (1.00)
MLL2	33 (13%)	215	0.459 (1.00)	0.0511 (1.00)	0.0091 (1.00)	0.0199 (1.00)	0.0752 (1.00)	0.0656 (1.00)	0.845 (1.00)	0.601 (1.00)	0.434 (1.00)	0.246 (1.00)	0.694 (1.00)	0.811 (1.00)
SSH2	12 (5%)	236	0.682 (1.00)	0.0935 (1.00)	0.157 (1.00)	0.824 (1.00)	0.224 (1.00)	0.858 (1.00)	0.932 (1.00)	0.93 (1.00)	0.685 (1.00)	0.906 (1.00)	0.684 (1.00)	0.833 (1.00)
ZNF709	12 (5%)	236	0.378 (1.00)	0.286 (1.00)	0.0262 (1.00)	0.108 (1.00)	0.333 (1.00)	0.637 (1.00)	0.14 (1.00)	0.011 (1.00)	0.636 (1.00)	0.293 (1.00)	0.26 (1.00)	0.543 (1.00)
BRDT	14 (6%)	234	1 (1.00)	0.914 (1.00)	0.0331 (1.00)	0.632 (1.00)	0.0142 (1.00)	0.973 (1.00)	0.58 (1.00)	0.112 (1.00)	0.936 (1.00)	0.746 (1.00)	1 (1.00)	0.241 (1.00)
SH3BGRL	6 (2%)	242			0.0283 (1.00)		0.111 (1.00)	0.695 (1.00)	0.784 (1.00)	0.145 (1.00)	0.0661 (1.00)	0.204 (1.00)
MLH3	17 (7%)	231	0.904 (1.00)	0.0477 (1.00)	0.0283 (1.00)	1 (1.00)	0.221 (1.00)	1 (1.00)	0.905 (1.00)	0.474 (1.00)	0.555 (1.00)	0.852 (1.00)	0.718 (1.00)	1 (1.00)
CCDC150	12 (5%)	236			0.202 (1.00)	0.253 (1.00)	0.222 (1.00)	0.152 (1.00)	0.711 (1.00)	0.308 (1.00)	0.927 (1.00)	0.632 (1.00)	0.897 (1.00)	0.649 (1.00)
NT5C3	7 (3%)	241	0.685 (1.00)	0.091 (1.00)	0.469 (1.00)		0.331 (1.00)	0.933 (1.00)	0.637 (1.00)	0.382 (1.00)	0.067 (1.00)	0.275 (1.00)
APAF1	13 (5%)	235	0.192 (1.00)	0.0912 (1.00)	0.0343 (1.00)	0.111 (1.00)	0.63 (1.00)	0.94 (1.00)	0.0952 (1.00)	0.0116 (1.00)	0.055 (1.00)	0.00962 (1.00)	0.319 (1.00)	0.616 (1.00)
KANK4	11 (4%)	237			0.0325 (1.00)	0.387 (1.00)	0.042 (1.00)	0.183 (1.00)	0.289 (1.00)	0.195 (1.00)	0.919 (1.00)	0.0487 (1.00)	0.886 (1.00)	0.111 (1.00)
NRIP1	13 (5%)	235	0.382 (1.00)	0.0775 (1.00)	0.0697 (1.00)	0.715 (1.00)	0.414 (1.00)	0.858 (1.00)	0.352 (1.00)	0.214 (1.00)	0.139 (1.00)	0.0264 (1.00)	0.852 (1.00)	0.541 (1.00)
GTF2H1	8 (3%)	240	0.687 (1.00)	0.206 (1.00)	0.384 (1.00)	0.777 (1.00)	0.881 (1.00)	0.233 (1.00)	0.257 (1.00)	0.659 (1.00)	0.665 (1.00)	0.148 (1.00)	0.598 (1.00)	0.339 (1.00)
ASXL2	14 (6%)	234	0.382 (1.00)	0.279 (1.00)	0.0642 (1.00)	0.384 (1.00)	0.729 (1.00)	0.505 (1.00)	0.311 (1.00)	0.361 (1.00)	0.489 (1.00)	0.0154 (1.00)	0.412 (1.00)	0.256 (1.00)
ZNF611	12 (5%)	236	1 (1.00)	0.0791 (1.00)	0.456 (1.00)	0.139 (1.00)	0.2 (1.00)	1 (1.00)	0.502 (1.00)	0.597 (1.00)	0.425 (1.00)	0.0655 (1.00)	0.759 (1.00)	0.0126 (1.00)
SUN3	6 (2%)	242			0.534 (1.00)		0.331 (1.00)	0.933 (1.00)	0.147 (1.00)	0.0211 (1.00)	0.0181 (1.00)	0.409 (1.00)
ZNF195	11 (4%)	237			0.0248 (1.00)	0.189 (1.00)	0.0979 (1.00)	1 (1.00)	0.229 (1.00)	0.0291 (1.00)	0.437 (1.00)	0.137 (1.00)	0.597 (1.00)	0.34 (1.00)
EXOSC9	10 (4%)	238	0.689 (1.00)	0.205 (1.00)	0.135 (1.00)	0.11 (1.00)	0.56 (1.00)	0.515 (1.00)	0.568 (1.00)	0.065 (1.00)	0.76 (1.00)	0.552 (1.00)
MFN2	9 (4%)	239			0.154 (1.00)	0.764 (1.00)	0.634 (1.00)	0.506 (1.00)	0.842 (1.00)	0.18 (1.00)	0.0362 (1.00)	0.166 (1.00)	0.189 (1.00)	0.639 (1.00)
LIMA1	8 (3%)	240			0.331 (1.00)	0.386 (1.00)	0.633 (1.00)	0.493 (1.00)	0.0257 (1.00)	0.331 (1.00)	0.663 (1.00)	0.241 (1.00)	0.796 (1.00)	0.119 (1.00)
PTPN12	10 (4%)	238	0.0567 (1.00)	0.153 (1.00)	0.175 (1.00)	0.777 (1.00)	0.00176 (1.00)	0.0959 (1.00)	0.359 (1.00)	0.551 (1.00)	1 (1.00)	0.92 (1.00)	1 (1.00)	0.34 (1.00)
MTF2	9 (4%)	239			0.155 (1.00)	0.108 (1.00)	0.286 (1.00)	0.762 (1.00)	0.706 (1.00)	0.179 (1.00)	0.547 (1.00)	0.123 (1.00)	0.257 (1.00)	0.835 (1.00)
MLL4	30 (12%)	218	0.681 (1.00)	0.0917 (1.00)	0.00025 (0.526)	0.0389 (1.00)	0.346 (1.00)	0.844 (1.00)	0.461 (1.00)	0.0427 (1.00)	0.142 (1.00)	0.0172 (1.00)	0.636 (1.00)	0.643 (1.00)
C1ORF101	12 (5%)	236	0.632 (1.00)	0.323 (1.00)	0.169 (1.00)	0.826 (1.00)	0.186 (1.00)	0.924 (1.00)	0.466 (1.00)	0.598 (1.00)	0.392 (1.00)	0.906 (1.00)	0.143 (1.00)	0.119 (1.00)
MBOAT2	7 (3%)	241			0.348 (1.00)	0.733 (1.00)	0.589 (1.00)	0.263 (1.00)	0.266 (1.00)	0.893 (1.00)	1 (1.00)	0.557 (1.00)	0.682 (1.00)	0.835 (1.00)
CHD4	35 (14%)	213	0.0989 (1.00)	0.337 (1.00)	0.397 (1.00)	0.744 (1.00)	0.983 (1.00)	0.372 (1.00)	0.376 (1.00)	0.917 (1.00)	0.553 (1.00)	0.842 (1.00)	0.445 (1.00)	0.401 (1.00)
SESN3	13 (5%)	235	0.535 (1.00)	0.248 (1.00)	0.0652 (1.00)	0.264 (1.00)	0.569 (1.00)	0.56 (1.00)	0.724 (1.00)	0.0487 (1.00)	0.236 (1.00)	0.456 (1.00)	0.223 (1.00)	1 (1.00)

'PTEN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00395 (Fisher's exact test), Q value = 1

Table S1. Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
PTEN MUTATED	11	6	9	7
PTEN WILD-TYPE	1	12	2	3

Figure S1. Get High-res Image Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PTEN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.063

Table S2. Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
PTEN MUTATED	8	0	6	7	12
PTEN WILD-TYPE	4	10	1	0	3

Figure S2. Get High-res Image Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S3. Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
PTEN MUTATED	130	14	4	6	2
PTEN WILD-TYPE	26	9	50	1	0

Figure S3. Get High-res Image Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PTEN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S4. Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
PTEN MUTATED	6	29	46
PTEN WILD-TYPE	37	10	7

Figure S4. Get High-res Image Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PTEN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0196 (Fisher's exact test), Q value = 1

Table S5. Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
PTEN MUTATED	26	21	33	9	29	14
PTEN WILD-TYPE	13	15	4	1	11	10

Figure S5. Get High-res Image Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'PTEN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0127 (Fisher's exact test), Q value = 1

Table S6. Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
PTEN MUTATED	42	44	36	10
PTEN WILD-TYPE	23	20	4	7

Figure S6. Get High-res Image Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S7. Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
PTEN MUTATED	18	66	74
PTEN WILD-TYPE	61	19	7

Figure S7. Get High-res Image Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PTEN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S8. Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
PTEN MUTATED	7	79	72
PTEN WILD-TYPE	52	28	7

Figure S8. Get High-res Image Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S9. Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
PTEN MUTATED	56	21	81
PTEN WILD-TYPE	22	50	10

Figure S9. Get High-res Image Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PTEN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S10. Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
PTEN MUTATED	33	12	60	53
PTEN WILD-TYPE	13	45	6	18

Figure S10. Get High-res Image Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S11. Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
PTEN MUTATED	49	11	10
PTEN WILD-TYPE	6	24	16

Figure S11. Get High-res Image Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S12. Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
PTEN MUTATED	16	42	12
PTEN WILD-TYPE	27	4	15

Figure S12. Get High-res Image Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PIK3R1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0675 (Fisher's exact test), Q value = 1

Table S13. Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
PIK3R1 MUTATED	5	2	6	3
PIK3R1 WILD-TYPE	7	16	5	7

'PIK3R1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0609 (Fisher's exact test), Q value = 1

Table S14. Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
PIK3R1 MUTATED	3	0	4	3	6
PIK3R1 WILD-TYPE	9	10	3	4	9

'PIK3R1 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-04 (Fisher's exact test), Q value = 0.42

Table S15. Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
PIK3R1 MUTATED	63	8	6	4	1
PIK3R1 WILD-TYPE	93	15	48	3	1

Figure S13. Get High-res Image Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PIK3R1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.063

Table S16. Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
PIK3R1 MUTATED	5	11	29
PIK3R1 WILD-TYPE	38	28	24

Figure S14. Get High-res Image Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PIK3R1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S17. Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
PIK3R1 MUTATED	13	11	18	3	16	9
PIK3R1 WILD-TYPE	26	25	19	7	24	15

'PIK3R1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S18. Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
PIK3R1 MUTATED	21	24	19	6
PIK3R1 WILD-TYPE	44	40	21	11

'PIK3R1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.23

Table S19. Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
PIK3R1 MUTATED	12	36	33
PIK3R1 WILD-TYPE	67	49	48

Figure S15. Get High-res Image Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PIK3R1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.042

Table S20. Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
PIK3R1 MUTATED	6	39	36
PIK3R1 WILD-TYPE	53	68	43

Figure S16. Get High-res Image Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0102 (Fisher's exact test), Q value = 1

Table S21. Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
PIK3R1 MUTATED	30	14	37
PIK3R1 WILD-TYPE	48	57	54

Figure S17. Get High-res Image Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0251 (Fisher's exact test), Q value = 1

Table S22. Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
PIK3R1 MUTATED	18	10	26	27
PIK3R1 WILD-TYPE	28	47	40	44

Figure S18. Get High-res Image Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.049 (Fisher's exact test), Q value = 1

Table S23. Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
PIK3R1 MUTATED	23	6	8
PIK3R1 WILD-TYPE	32	29	18

Figure S19. Get High-res Image Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 1

Table S24. Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
PIK3R1 MUTATED	9	17	11
PIK3R1 WILD-TYPE	34	29	16

'TP53 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.084

Table S25. Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
TP53 MUTATED	2	13	1	0
TP53 WILD-TYPE	10	5	10	10

Figure S20. Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TP53 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S26. Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
TP53 MUTATED	4	10	1	1	0
TP53 WILD-TYPE	8	0	6	6	15

Figure S21. Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S27. Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
TP53 MUTATED	11	5	50	2	0
TP53 WILD-TYPE	145	18	4	5	2

Figure S22. Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TP53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S28. Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
TP53 MUTATED	32	3	5
TP53 WILD-TYPE	11	36	48

Figure S23. Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TP53 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.11

Table S29. Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
TP53 MUTATED	9	19	4	2	2	8
TP53 WILD-TYPE	30	17	33	8	38	16

Figure S24. Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'TP53 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S30. Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
TP53 MUTATED	21	13	6	4
TP53 WILD-TYPE	44	51	34	13

'TP53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S31. Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
TP53 MUTATED	58	8	3
TP53 WILD-TYPE	21	77	78

Figure S25. Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S32. Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
TP53 MUTATED	48	16	5
TP53 WILD-TYPE	11	91	74

Figure S26. Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S33. Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
TP53 MUTATED	9	47	8
TP53 WILD-TYPE	69	24	83

Figure S27. Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S34. Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
TP53 MUTATED	2	43	3	16
TP53 WILD-TYPE	44	14	63	55

Figure S28. Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S35. Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
TP53 MUTATED	5	24	7
TP53 WILD-TYPE	50	11	19

Figure S29. Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S36. Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
TP53 MUTATED	23	3	10
TP53 WILD-TYPE	20	43	17

Figure S30. Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CTCF MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S37. Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
CTCF MUTATED	3	1	4	1
CTCF WILD-TYPE	9	17	7	9

'CTCF MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S38. Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
CTCF MUTATED	3	0	3	1	2
CTCF WILD-TYPE	9	10	4	6	13

'CTCF MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.063

Table S39. Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
CTCF MUTATED	38	1	0	2	0
CTCF WILD-TYPE	118	22	54	5	2

Figure S31. Get High-res Image Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CTCF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0667 (Fisher's exact test), Q value = 1

Table S40. Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
CTCF MUTATED	3	10	8
CTCF WILD-TYPE	40	29	45

'CTCF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0621 (Fisher's exact test), Q value = 1

Table S41. Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
CTCF MUTATED	9	3	5	5	9	3
CTCF WILD-TYPE	30	33	32	5	31	21

'CTCF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S42. Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
CTCF MUTATED	12	10	10	2
CTCF WILD-TYPE	53	54	30	15

'CTCF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00086 (Fisher's exact test), Q value = 1

Table S43. Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
CTCF MUTATED	5	16	23
CTCF WILD-TYPE	74	69	58

Figure S32. Get High-res Image Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CTCF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00153 (Fisher's exact test), Q value = 1

Table S44. Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
CTCF MUTATED	3	19	22
CTCF WILD-TYPE	56	88	57

Figure S33. Get High-res Image Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CTCF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0065 (Fisher's exact test), Q value = 1

Table S45. Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
CTCF MUTATED	16	5	23
CTCF WILD-TYPE	62	66	68

Figure S34. Get High-res Image Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CTCF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0578 (Fisher's exact test), Q value = 1

Table S46. Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
CTCF MUTATED	11	5	17	11
CTCF WILD-TYPE	35	52	49	60

'CTCF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.01 (Fisher's exact test), Q value = 1

Table S47. Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
CTCF MUTATED	12	1	1
CTCF WILD-TYPE	43	34	25

Figure S35. Get High-res Image Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CTCF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 1

Table S48. Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
CTCF MUTATED	2	9	3
CTCF WILD-TYPE	41	37	24

'FBXW7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 1

Table S49. Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
FBXW7 MUTATED	3	4	4	0
FBXW7 WILD-TYPE	9	14	7	10

'FBXW7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 1

Table S50. Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
FBXW7 MUTATED	3	3	3	1	1
FBXW7 WILD-TYPE	9	7	4	6	14

'FBXW7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S51. Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
FBXW7 MUTATED	24	2	12	1	0
FBXW7 WILD-TYPE	132	21	42	6	2

'FBXW7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0357 (Fisher's exact test), Q value = 1

Table S52. Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
FBXW7 MUTATED	11	2	9
FBXW7 WILD-TYPE	32	37	44

Figure S36. Get High-res Image Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FBXW7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S53. Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
FBXW7 MUTATED	10	5	5	4	3	4
FBXW7 WILD-TYPE	29	31	32	6	37	20

'FBXW7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.325 (Fisher's exact test), Q value = 1

Table S54. Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
FBXW7 MUTATED	14	7	6	4
FBXW7 WILD-TYPE	51	57	34	13

'FBXW7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0657 (Fisher's exact test), Q value = 1

Table S55. Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
FBXW7 MUTATED	19	10	10
FBXW7 WILD-TYPE	60	75	71

'FBXW7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.021 (Fisher's exact test), Q value = 1

Table S56. Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
FBXW7 MUTATED	16	11	12
FBXW7 WILD-TYPE	43	96	67

Figure S37. Get High-res Image Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FBXW7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S57. Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
FBXW7 MUTATED	11	12	12
FBXW7 WILD-TYPE	67	59	79

'FBXW7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.058 (Fisher's exact test), Q value = 1

Table S58. Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
FBXW7 MUTATED	3	14	7	11
FBXW7 WILD-TYPE	43	43	59	60

'FBXW7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 1

Table S59. Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
FBXW7 MUTATED	6	8	4
FBXW7 WILD-TYPE	49	27	22

'FBXW7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0647 (Fisher's exact test), Q value = 1

Table S60. Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
FBXW7 MUTATED	10	3	5
FBXW7 WILD-TYPE	33	43	22

'KRAS MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S61. Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
KRAS MUTATED	5	2	3	1
KRAS WILD-TYPE	7	16	8	9

'KRAS MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0123 (Fisher's exact test), Q value = 1

Table S62. Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
KRAS MUTATED	3	0	3	4	1
KRAS WILD-TYPE	9	10	4	3	14

Figure S38. Get High-res Image Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'KRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00136 (Fisher's exact test), Q value = 1

Table S63. Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
KRAS MUTATED	42	4	2	2	0
KRAS WILD-TYPE	114	19	52	5	2

Figure S39. Get High-res Image Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0541 (Fisher's exact test), Q value = 1

Table S64. Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
KRAS MUTATED	5	8	17
KRAS WILD-TYPE	38	31	36

'KRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S65. Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
KRAS MUTATED	6	9	12	3	5	5
KRAS WILD-TYPE	33	27	25	7	35	19

'KRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S66. Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
KRAS MUTATED	14	10	14	2
KRAS WILD-TYPE	51	54	26	15

'KRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S67. Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
KRAS MUTATED	11	20	21
KRAS WILD-TYPE	68	65	60

'KRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0142 (Fisher's exact test), Q value = 1

Table S68. Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
KRAS MUTATED	5	26	21
KRAS WILD-TYPE	54	81	58

Figure S40. Get High-res Image Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0639 (Fisher's exact test), Q value = 1

Table S69. Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
KRAS MUTATED	18	9	25
KRAS WILD-TYPE	60	62	66

'KRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0122 (Fisher's exact test), Q value = 1

Table S70. Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
KRAS MUTATED	5	7	19	21
KRAS WILD-TYPE	41	50	47	50

Figure S41. Get High-res Image Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0538 (Fisher's exact test), Q value = 1

Table S71. Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
KRAS MUTATED	14	3	8
KRAS WILD-TYPE	41	32	18

'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0387 (Fisher's exact test), Q value = 1

Table S72. Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
KRAS MUTATED	4	14	7
KRAS WILD-TYPE	39	32	20

Figure S42. Get High-res Image Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ARHGAP35 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S73. Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
ARHGAP35 MUTATED	4	5	3	0
ARHGAP35 WILD-TYPE	8	13	8	10

'ARHGAP35 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S74. Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
ARHGAP35 MUTATED	4	2	2	1	3
ARHGAP35 WILD-TYPE	8	8	5	6	12

'ARHGAP35 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S75. Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
ARHGAP35 MUTATED	26	1	7	2	0
ARHGAP35 WILD-TYPE	130	22	47	5	2

'ARHGAP35 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S76. Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
ARHGAP35 MUTATED	6	5	8
ARHGAP35 WILD-TYPE	37	34	45

'ARHGAP35 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0496 (Fisher's exact test), Q value = 1

Table S77. Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
ARHGAP35 MUTATED	11	8	2	2	4	2
ARHGAP35 WILD-TYPE	28	28	35	8	36	22

Figure S43. Get High-res Image Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ARHGAP35 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 1

Table S78. Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
ARHGAP35 MUTATED	16	7	4	2
ARHGAP35 WILD-TYPE	49	57	36	15

'ARHGAP35 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 1

Table S79. Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
ARHGAP35 MUTATED	16	11	9
ARHGAP35 WILD-TYPE	63	74	72

'ARHGAP35 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S80. Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
ARHGAP35 MUTATED	10	16	10
ARHGAP35 WILD-TYPE	49	91	69

'ARHGAP35 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S81. Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
ARHGAP35 MUTATED	12	11	10
ARHGAP35 WILD-TYPE	66	60	81

'ARHGAP35 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S82. Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
ARHGAP35 MUTATED	4	11	6	12
ARHGAP35 WILD-TYPE	42	46	60	59

'ARHGAP35 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S83. Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
ARHGAP35 MUTATED	5	7	3
ARHGAP35 WILD-TYPE	50	28	23

'ARHGAP35 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S84. Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
ARHGAP35 MUTATED	7	3	5
ARHGAP35 WILD-TYPE	36	43	22

'PIK3CA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S85. Gene #8: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
PIK3CA MUTATED	7	8	6	6
PIK3CA WILD-TYPE	5	10	5	4

'PIK3CA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 1

Table S86. Gene #8: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
PIK3CA MUTATED	5	4	6	4	8
PIK3CA WILD-TYPE	7	6	1	3	7

'PIK3CA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S87. Gene #8: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
PIK3CA MUTATED	87	11	24	4	2
PIK3CA WILD-TYPE	69	12	30	3	0

'PIK3CA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S88. Gene #8: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
PIK3CA MUTATED	21	22	26
PIK3CA WILD-TYPE	22	17	27

'PIK3CA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S89. Gene #8: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
PIK3CA MUTATED	17	22	19	7	18	15
PIK3CA WILD-TYPE	22	14	18	3	22	9

'PIK3CA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S90. Gene #8: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
PIK3CA MUTATED	32	32	24	10
PIK3CA WILD-TYPE	33	32	16	7

'PIK3CA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S91. Gene #8: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
PIK3CA MUTATED	39	46	45
PIK3CA WILD-TYPE	40	39	36

'PIK3CA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 1

Table S92. Gene #8: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
PIK3CA MUTATED	26	62	42
PIK3CA WILD-TYPE	33	45	37

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S93. Gene #8: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
PIK3CA MUTATED	42	33	53
PIK3CA WILD-TYPE	36	38	38

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S94. Gene #8: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
PIK3CA MUTATED	26	25	37	40
PIK3CA WILD-TYPE	20	32	29	31

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S95. Gene #8: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
PIK3CA MUTATED	31	14	14
PIK3CA WILD-TYPE	24	21	12

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S96. Gene #8: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
PIK3CA MUTATED	20	27	12
PIK3CA WILD-TYPE	23	19	15

'ARID1A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S97. Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
ARID1A MUTATED	5	3	4	5
ARID1A WILD-TYPE	7	15	7	5

'ARID1A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0722 (Fisher's exact test), Q value = 1

Table S98. Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
ARID1A MUTATED	5	0	3	4	5
ARID1A WILD-TYPE	7	10	4	3	10

'ARID1A MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S99. Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
ARID1A MUTATED	68	3	3	5	1
ARID1A WILD-TYPE	88	20	51	2	1

Figure S44. Get High-res Image Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ARID1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S100. Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
ARID1A MUTATED	9	16	20
ARID1A WILD-TYPE	34	23	33

'ARID1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0176 (Fisher's exact test), Q value = 1

Table S101. Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
ARID1A MUTATED	12	13	18	3	18	2
ARID1A WILD-TYPE	27	23	19	7	22	22

Figure S45. Get High-res Image Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ARID1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S102. Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
ARID1A MUTATED	22	24	17	3
ARID1A WILD-TYPE	43	40	23	14

'ARID1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0216 (Fisher's exact test), Q value = 1

Table S103. Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
ARID1A MUTATED	17	33	32
ARID1A WILD-TYPE	62	52	49

Figure S46. Get High-res Image Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ARID1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.063

Table S104. Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
ARID1A MUTATED	6	45	31
ARID1A WILD-TYPE	53	62	48

Figure S47. Get High-res Image Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARID1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0347 (Fisher's exact test), Q value = 1

Table S105. Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
ARID1A MUTATED	26	16	38
ARID1A WILD-TYPE	52	55	53

Figure S48. Get High-res Image Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ARID1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00202 (Fisher's exact test), Q value = 1

Table S106. Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
ARID1A MUTATED	15	8	28	29
ARID1A WILD-TYPE	31	49	38	42

Figure S49. Get High-res Image Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ARID1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0319 (Fisher's exact test), Q value = 1

Table S107. Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
ARID1A MUTATED	24	6	10
ARID1A WILD-TYPE	31	29	16

Figure S50. Get High-res Image Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ARID1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00426 (Fisher's exact test), Q value = 1

Table S108. Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
ARID1A MUTATED	7	22	11
ARID1A WILD-TYPE	36	24	16

Figure S51. Get High-res Image Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CTNNB1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S109. Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
CTNNB1 MUTATED	0	3	4	10
CTNNB1 WILD-TYPE	12	15	7	0

Figure S52. Get High-res Image Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CTNNB1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.042

Table S110. Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
CTNNB1 MUTATED	4	0	1	0	12
CTNNB1 WILD-TYPE	8	10	6	7	3

Figure S53. Get High-res Image Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CTNNB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S111. Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
CTNNB1 MUTATED	59	11	1	1	0
CTNNB1 WILD-TYPE	97	12	53	6	2

Figure S54. Get High-res Image Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CTNNB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00322 (Fisher's exact test), Q value = 1

Table S112. Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
CTNNB1 MUTATED	4	13	20
CTNNB1 WILD-TYPE	39	26	33

Figure S55. Get High-res Image Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CTNNB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S113. Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
CTNNB1 MUTATED	6	10	6	0	32	10
CTNNB1 WILD-TYPE	33	26	31	10	8	14

Figure S56. Get High-res Image Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CTNNB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00533 (Fisher's exact test), Q value = 1

Table S114. Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
CTNNB1 MUTATED	15	32	10	7
CTNNB1 WILD-TYPE	50	32	30	10

Figure S57. Get High-res Image Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S115. Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
CTNNB1 MUTATED	10	47	16
CTNNB1 WILD-TYPE	69	38	65

Figure S58. Get High-res Image Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S116. Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
CTNNB1 MUTATED	1	59	13
CTNNB1 WILD-TYPE	58	48	66

Figure S59. Get High-res Image Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S117. Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
CTNNB1 MUTATED	49	4	18
CTNNB1 WILD-TYPE	29	67	73

Figure S60. Get High-res Image Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S118. Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
CTNNB1 MUTATED	40	3	11	17
CTNNB1 WILD-TYPE	6	54	55	54

Figure S61. Get High-res Image Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S119. Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
CTNNB1 MUTATED	15	4	8
CTNNB1 WILD-TYPE	40	31	18

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S120. Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
CTNNB1 MUTATED	7	13	7
CTNNB1 WILD-TYPE	36	33	20

'FGFR2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S121. Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
FGFR2 MUTATED	3	2	1	0
FGFR2 WILD-TYPE	9	16	10	10

'FGFR2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S122. Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
FGFR2 MUTATED	2	0	1	2	1
FGFR2 WILD-TYPE	10	10	6	5	14

'FGFR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S123. Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
FGFR2 MUTATED	22	3	3	2	0
FGFR2 WILD-TYPE	134	20	51	5	2

'FGFR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S124. Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
FGFR2 MUTATED	5	5	7
FGFR2 WILD-TYPE	38	34	46

'FGFR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.976 (Fisher's exact test), Q value = 1

Table S125. Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
FGFR2 MUTATED	6	5	6	1	4	3
FGFR2 WILD-TYPE	33	31	31	9	36	21

'FGFR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 1

Table S126. Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
FGFR2 MUTATED	7	8	6	4
FGFR2 WILD-TYPE	58	56	34	13

'FGFR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S127. Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
FGFR2 MUTATED	10	10	10
FGFR2 WILD-TYPE	69	75	71

'FGFR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S128. Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
FGFR2 MUTATED	4	16	10
FGFR2 WILD-TYPE	55	91	69

'FGFR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S129. Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
FGFR2 MUTATED	12	6	12
FGFR2 WILD-TYPE	66	65	79

'FGFR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0303 (Fisher's exact test), Q value = 1

Table S130. Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
FGFR2 MUTATED	1	6	9	14
FGFR2 WILD-TYPE	45	51	57	57

Figure S62. Get High-res Image Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FGFR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S131. Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
FGFR2 MUTATED	8	6	2
FGFR2 WILD-TYPE	47	29	24

'FGFR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S132. Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
FGFR2 MUTATED	6	7	3
FGFR2 WILD-TYPE	37	39	24

'ZFHX3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 1

Table S133. Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
ZFHX3 MUTATED	6	6	2	2
ZFHX3 WILD-TYPE	6	12	9	8

'ZFHX3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S134. Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
ZFHX3 MUTATED	4	2	2	5	3
ZFHX3 WILD-TYPE	8	8	5	2	12

'ZFHX3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0392 (Fisher's exact test), Q value = 1

Table S135. Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
ZFHX3 MUTATED	34	3	3	2	0
ZFHX3 WILD-TYPE	122	20	51	5	2

Figure S63. Get High-res Image Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZFHX3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0146 (Fisher's exact test), Q value = 1

Table S136. Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
ZFHX3 MUTATED	5	1	12
ZFHX3 WILD-TYPE	38	38	41

Figure S64. Get High-res Image Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ZFHX3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 1

Table S137. Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
ZFHX3 MUTATED	7	11	5	3	5	4
ZFHX3 WILD-TYPE	32	25	32	7	35	20

'ZFHX3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S138. Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
ZFHX3 MUTATED	12	12	7	4
ZFHX3 WILD-TYPE	53	52	33	13

'ZFHX3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S139. Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
ZFHX3 MUTATED	13	16	14
ZFHX3 WILD-TYPE	66	69	67

'ZFHX3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S140. Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
ZFHX3 MUTATED	6	23	14
ZFHX3 WILD-TYPE	53	84	65

'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S141. Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
ZFHX3 MUTATED	17	8	16
ZFHX3 WILD-TYPE	61	63	75

'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0686 (Fisher's exact test), Q value = 1

Table S142. Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
ZFHX3 MUTATED	4	8	10	19
ZFHX3 WILD-TYPE	42	49	56	52

'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S143. Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
ZFHX3 MUTATED	9	3	4
ZFHX3 WILD-TYPE	46	32	22

'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.654 (Fisher's exact test), Q value = 1

Table S144. Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
ZFHX3 MUTATED	6	5	5
ZFHX3 WILD-TYPE	37	41	22

'TCP11L2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0438 (Fisher's exact test), Q value = 1

Table S145. Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
TCP11L2 MUTATED	4	2	0	0
TCP11L2 WILD-TYPE	8	16	11	10

Figure S65. Get High-res Image Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TCP11L2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0191 (Fisher's exact test), Q value = 1

Table S146. Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
TCP11L2 MUTATED	2	0	1	3	0
TCP11L2 WILD-TYPE	10	10	6	4	15

Figure S66. Get High-res Image Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TCP11L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0174 (Fisher's exact test), Q value = 1

Table S147. Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
TCP11L2 MUTATED	12	0	0	2	0
TCP11L2 WILD-TYPE	144	23	54	5	2

Figure S67. Get High-res Image Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TCP11L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S148. Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
TCP11L2 MUTATED	1	0	5
TCP11L2 WILD-TYPE	42	39	48

'TCP11L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S149. Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
TCP11L2 MUTATED	2	4	3	2	1	0
TCP11L2 WILD-TYPE	37	32	34	8	39	24

'TCP11L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S150. Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
TCP11L2 MUTATED	3	4	5	0
TCP11L2 WILD-TYPE	62	60	35	17

'TCP11L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 1

Table S151. Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
TCP11L2 MUTATED	6	6	2
TCP11L2 WILD-TYPE	73	79	79

'TCP11L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0317 (Fisher's exact test), Q value = 1

Table S152. Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
TCP11L2 MUTATED	1	11	2
TCP11L2 WILD-TYPE	58	96	77

Figure S68. Get High-res Image Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TCP11L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S153. Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
TCP11L2 MUTATED	6	4	3
TCP11L2 WILD-TYPE	72	67	88

'TCP11L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0111 (Fisher's exact test), Q value = 1

Table S154. Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
TCP11L2 MUTATED	1	4	0	8
TCP11L2 WILD-TYPE	45	53	66	63

Figure S69. Get High-res Image Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TCP11L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S155. Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
TCP11L2 MUTATED	1	2	1
TCP11L2 WILD-TYPE	54	33	25

'TCP11L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S156. Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
TCP11L2 MUTATED	1	1	2
TCP11L2 WILD-TYPE	42	45	25

'SPOP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S157. Gene #14: 'SPOP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
SPOP MUTATED	2	1	0	2
SPOP WILD-TYPE	10	17	11	8

'SPOP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.678 (Fisher's exact test), Q value = 1

Table S158. Gene #14: 'SPOP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
SPOP MUTATED	0	1	1	1	2
SPOP WILD-TYPE	12	9	6	6	13

'SPOP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S159. Gene #14: 'SPOP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
SPOP MUTATED	15	2	3	1	0
SPOP WILD-TYPE	141	21	51	6	2

'SPOP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 1

Table S160. Gene #14: 'SPOP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
SPOP MUTATED	4	1	5
SPOP WILD-TYPE	39	38	48

'SPOP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S161. Gene #14: 'SPOP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
SPOP MUTATED	5	3	2	1	3	1
SPOP WILD-TYPE	34	33	35	9	37	23

'SPOP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S162. Gene #14: 'SPOP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
SPOP MUTATED	4	6	4	1
SPOP WILD-TYPE	61	58	36	16

'SPOP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 1

Table S163. Gene #14: 'SPOP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
SPOP MUTATED	5	11	5
SPOP WILD-TYPE	74	74	76

'SPOP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S164. Gene #14: 'SPOP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
SPOP MUTATED	4	11	6
SPOP WILD-TYPE	55	96	73

'SPOP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S165. Gene #14: 'SPOP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
SPOP MUTATED	7	7	7
SPOP WILD-TYPE	71	64	84

'SPOP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S166. Gene #14: 'SPOP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
SPOP MUTATED	6	5	4	6
SPOP WILD-TYPE	40	52	62	65

'SPOP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S167. Gene #14: 'SPOP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
SPOP MUTATED	3	4	2
SPOP WILD-TYPE	52	31	24

'SPOP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 1

Table S168. Gene #14: 'SPOP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
SPOP MUTATED	3	2	4
SPOP WILD-TYPE	40	44	23

'RBMX MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S169. Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
RBMX MUTATED	3	2	0	0
RBMX WILD-TYPE	9	16	11	10

'RBMX MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.092 (Fisher's exact test), Q value = 1

Table S170. Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
RBMX MUTATED	2	0	1	2	0
RBMX WILD-TYPE	10	10	6	5	15

'RBMX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 1

Table S171. Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
RBMX MUTATED	12	0	0	0	0
RBMX WILD-TYPE	144	23	54	7	2

'RBMX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S172. Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
RBMX MUTATED	1	0	3
RBMX WILD-TYPE	42	39	50

'RBMX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.017 (Fisher's exact test), Q value = 1

Table S173. Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
RBMX MUTATED	1	3	3	3	0	1
RBMX WILD-TYPE	38	33	34	7	40	23

Figure S70. Get High-res Image Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'RBMX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.67 (Fisher's exact test), Q value = 1

Table S174. Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
RBMX MUTATED	3	3	4	1
RBMX WILD-TYPE	62	61	36	16

'RBMX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S175. Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
RBMX MUTATED	3	7	3
RBMX WILD-TYPE	76	78	78

'RBMX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S176. Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
RBMX MUTATED	2	6	5
RBMX WILD-TYPE	57	101	74

'RBMX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S177. Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
RBMX MUTATED	4	4	5
RBMX WILD-TYPE	74	67	86

'RBMX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0259 (Fisher's exact test), Q value = 1

Table S178. Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
RBMX MUTATED	1	2	1	9
RBMX WILD-TYPE	45	55	65	62

Figure S71. Get High-res Image Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RBMX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S179. Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
RBMX MUTATED	3	1	0
RBMX WILD-TYPE	52	34	26

'RBMX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S180. Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
RBMX MUTATED	2	1	1
RBMX WILD-TYPE	41	45	26

'SOX17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00467 (Fisher's exact test), Q value = 1

Table S181. Gene #16: 'SOX17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
SOX17 MUTATED	3	2	0	1	1
SOX17 WILD-TYPE	153	21	54	6	1

Figure S72. Get High-res Image Gene #16: 'SOX17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SOX17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 1

Table S182. Gene #16: 'SOX17 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
SOX17 MUTATED	0	3	1
SOX17 WILD-TYPE	43	36	52

'SOX17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S183. Gene #16: 'SOX17 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
SOX17 MUTATED	2	0	3	0	1	0
SOX17 WILD-TYPE	37	36	34	10	39	24

'SOX17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S184. Gene #16: 'SOX17 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
SOX17 MUTATED	1	5	0	0
SOX17 WILD-TYPE	64	59	40	17

'SOX17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S185. Gene #16: 'SOX17 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
SOX17 MUTATED	1	1	5
SOX17 WILD-TYPE	78	84	76

'SOX17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S186. Gene #16: 'SOX17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
SOX17 MUTATED	1	2	4
SOX17 WILD-TYPE	58	105	75

'SOX17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S187. Gene #16: 'SOX17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
SOX17 MUTATED	3	1	3
SOX17 WILD-TYPE	75	70	88

'SOX17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S188. Gene #16: 'SOX17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
SOX17 MUTATED	1	1	4	1
SOX17 WILD-TYPE	45	56	62	70

'NFE2L2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0907 (Fisher's exact test), Q value = 1

Table S189. Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
NFE2L2 MUTATED	0	1	3	0
NFE2L2 WILD-TYPE	12	17	8	10

'NFE2L2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S190. Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
NFE2L2 MUTATED	1	0	2	0	1
NFE2L2 WILD-TYPE	11	10	5	7	14

'NFE2L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0153 (Fisher's exact test), Q value = 1

Table S191. Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
NFE2L2 MUTATED	10	3	0	2	0
NFE2L2 WILD-TYPE	146	20	54	5	2

Figure S73. Get High-res Image Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NFE2L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S192. Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
NFE2L2 MUTATED	1	3	3
NFE2L2 WILD-TYPE	42	36	50

'NFE2L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S193. Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
NFE2L2 MUTATED	3	2	4	2	0	2
NFE2L2 WILD-TYPE	36	34	33	8	40	22

'NFE2L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S194. Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
NFE2L2 MUTATED	3	3	6	1
NFE2L2 WILD-TYPE	62	61	34	16

'NFE2L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0149 (Fisher's exact test), Q value = 1

Table S195. Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
NFE2L2 MUTATED	2	2	10
NFE2L2 WILD-TYPE	77	83	71

Figure S74. Get High-res Image Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NFE2L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0195 (Fisher's exact test), Q value = 1

Table S196. Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
NFE2L2 MUTATED	3	2	9
NFE2L2 WILD-TYPE	56	105	70

Figure S75. Get High-res Image Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NFE2L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 1

Table S197. Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
NFE2L2 MUTATED	3	3	9
NFE2L2 WILD-TYPE	75	68	82

'NFE2L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S198. Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
NFE2L2 MUTATED	0	3	7	5
NFE2L2 WILD-TYPE	46	54	59	66

'NFE2L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 1

Table S199. Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
NFE2L2 MUTATED	5	1	0
NFE2L2 WILD-TYPE	50	34	26

'NFE2L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S200. Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
NFE2L2 MUTATED	1	4	1
NFE2L2 WILD-TYPE	42	42	26

'CCND1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S201. Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
CCND1 MUTATED	2	1	0	1
CCND1 WILD-TYPE	10	17	11	9

'CCND1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S202. Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
CCND1 MUTATED	1	0	1	1	1
CCND1 WILD-TYPE	11	10	6	6	14

'CCND1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0795 (Fisher's exact test), Q value = 1

Table S203. Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
CCND1 MUTATED	14	0	0	0	0
CCND1 WILD-TYPE	142	23	54	7	2

'CCND1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 1

Table S204. Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
CCND1 MUTATED	1	1	5
CCND1 WILD-TYPE	42	38	48

'CCND1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S205. Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
CCND1 MUTATED	4	3	1	0	1	1
CCND1 WILD-TYPE	35	33	36	10	39	23

'CCND1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.965 (Fisher's exact test), Q value = 1

Table S206. Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
CCND1 MUTATED	3	4	2	1
CCND1 WILD-TYPE	62	60	38	16

'CCND1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S207. Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
CCND1 MUTATED	3	7	4
CCND1 WILD-TYPE	76	78	77

'CCND1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0305 (Fisher's exact test), Q value = 1

Table S208. Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
CCND1 MUTATED	0	10	4
CCND1 WILD-TYPE	59	97	75

Figure S76. Get High-res Image Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CCND1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.06 (Fisher's exact test), Q value = 1

Table S209. Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
CCND1 MUTATED	8	1	5
CCND1 WILD-TYPE	70	70	86

'CCND1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.424 (Fisher's exact test), Q value = 1

Table S210. Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
CCND1 MUTATED	3	1	4	6
CCND1 WILD-TYPE	43	56	62	65

'CCND1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S211. Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
CCND1 MUTATED	3	0	1
CCND1 WILD-TYPE	52	35	25

'CCND1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S212. Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
CCND1 MUTATED	0	3	1
CCND1 WILD-TYPE	43	43	26

'GNPTAB MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S213. Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
GNPTAB MUTATED	1	3	0	0
GNPTAB WILD-TYPE	11	15	11	10

'GNPTAB MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0782 (Fisher's exact test), Q value = 1

Table S214. Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
GNPTAB MUTATED	3	0	1	0	0
GNPTAB WILD-TYPE	9	10	6	7	15

'GNPTAB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00728 (Fisher's exact test), Q value = 1

Table S215. Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
GNPTAB MUTATED	16	0	1	3	0
GNPTAB WILD-TYPE	140	23	53	4	2

Figure S77. Get High-res Image Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GNPTAB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 1

Table S216. Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
GNPTAB MUTATED	3	1	8
GNPTAB WILD-TYPE	40	38	45

'GNPTAB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S217. Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
GNPTAB MUTATED	5	5	4	1	1	1
GNPTAB WILD-TYPE	34	31	33	9	39	23

'GNPTAB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S218. Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
GNPTAB MUTATED	5	7	4	1
GNPTAB WILD-TYPE	60	57	36	16

'GNPTAB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S219. Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
GNPTAB MUTATED	9	8	3
GNPTAB WILD-TYPE	70	77	78

'GNPTAB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0547 (Fisher's exact test), Q value = 1

Table S220. Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
GNPTAB MUTATED	2	14	4
GNPTAB WILD-TYPE	57	93	75

'GNPTAB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S221. Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
GNPTAB MUTATED	8	6	5
GNPTAB WILD-TYPE	70	65	86

'GNPTAB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S222. Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
GNPTAB MUTATED	3	5	2	9
GNPTAB WILD-TYPE	43	52	64	62

'GNPTAB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S223. Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
GNPTAB MUTATED	5	3	2
GNPTAB WILD-TYPE	50	32	24

'GNPTAB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 1

Table S224. Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
GNPTAB MUTATED	3	2	5
GNPTAB WILD-TYPE	40	44	22

'ARID5B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.961 (Fisher's exact test), Q value = 1

Table S225. Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
ARID5B MUTATED	3	3	2	2
ARID5B WILD-TYPE	9	15	9	8

'ARID5B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S226. Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
ARID5B MUTATED	4	0	3	1	2
ARID5B WILD-TYPE	8	10	4	6	13

'ARID5B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00613 (Fisher's exact test), Q value = 1

Table S227. Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
ARID5B MUTATED	25	2	0	1	0
ARID5B WILD-TYPE	131	21	54	6	2

Figure S78. Get High-res Image Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ARID5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 1

Table S228. Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
ARID5B MUTATED	1	1	6
ARID5B WILD-TYPE	42	38	47

'ARID5B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S229. Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
ARID5B MUTATED	4	5	5	4	3	3
ARID5B WILD-TYPE	35	31	32	6	37	21

'ARID5B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 1

Table S230. Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
ARID5B MUTATED	4	10	7	3
ARID5B WILD-TYPE	61	54	33	14

'ARID5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 1

Table S231. Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
ARID5B MUTATED	5	13	11
ARID5B WILD-TYPE	74	72	70

'ARID5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0487 (Fisher's exact test), Q value = 1

Table S232. Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
ARID5B MUTATED	2	16	11
ARID5B WILD-TYPE	57	91	68

Figure S79. Get High-res Image Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARID5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S233. Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
ARID5B MUTATED	8	5	14
ARID5B WILD-TYPE	70	66	77

'ARID5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S234. Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
ARID5B MUTATED	4	3	10	10
ARID5B WILD-TYPE	42	54	56	61

'ARID5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S235. Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
ARID5B MUTATED	5	1	0
ARID5B WILD-TYPE	50	34	26

'ARID5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S236. Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
ARID5B MUTATED	0	3	3
ARID5B WILD-TYPE	43	43	24

'DNER MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S237. Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
DNER MUTATED	3	2	0	0
DNER WILD-TYPE	9	16	11	10

'DNER MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.092 (Fisher's exact test), Q value = 1

Table S238. Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
DNER MUTATED	2	0	2	1	0
DNER WILD-TYPE	10	10	5	6	15

'DNER MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00165 (Fisher's exact test), Q value = 1

Table S239. Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
DNER MUTATED	15	0	0	3	0
DNER WILD-TYPE	141	23	54	4	2

Figure S80. Get High-res Image Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DNER MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S240. Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
DNER MUTATED	3	1	4
DNER WILD-TYPE	40	38	49

'DNER MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0114 (Fisher's exact test), Q value = 1

Table S241. Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
DNER MUTATED	4	4	4	3	0	0
DNER WILD-TYPE	35	32	33	7	40	24

Figure S81. Get High-res Image Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'DNER MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 1

Table S242. Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
DNER MUTATED	4	5	6	0
DNER WILD-TYPE	61	59	34	17

'DNER MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S243. Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
DNER MUTATED	6	7	5
DNER WILD-TYPE	73	78	76

'DNER MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0625 (Fisher's exact test), Q value = 1

Table S244. Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
DNER MUTATED	1	12	5
DNER WILD-TYPE	58	95	74

'DNER MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S245. Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
DNER MUTATED	7	5	5
DNER WILD-TYPE	71	66	86

'DNER MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 1

Table S246. Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
DNER MUTATED	1	5	4	7
DNER WILD-TYPE	45	52	62	64

'DNER MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S247. Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
DNER MUTATED	4	1	2
DNER WILD-TYPE	51	34	24

'DNER MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S248. Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
DNER MUTATED	2	3	2
DNER WILD-TYPE	41	43	25

'EP300 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S249. Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
EP300 MUTATED	1	1	1	0
EP300 WILD-TYPE	11	17	10	10

'EP300 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S250. Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
EP300 MUTATED	1	0	1	0	1
EP300 WILD-TYPE	11	10	6	7	14

'EP300 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0339 (Fisher's exact test), Q value = 1

Table S251. Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
EP300 MUTATED	18	2	0	1	0
EP300 WILD-TYPE	138	21	54	6	2

Figure S82. Get High-res Image Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EP300 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S252. Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
EP300 MUTATED	1	2	6
EP300 WILD-TYPE	42	37	47

'EP300 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 1

Table S253. Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
EP300 MUTATED	5	7	3	2	3	0
EP300 WILD-TYPE	34	29	34	8	37	24

'EP300 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S254. Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
EP300 MUTATED	8	7	5	0
EP300 WILD-TYPE	57	57	35	17

'EP300 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S255. Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
EP300 MUTATED	4	9	7
EP300 WILD-TYPE	75	76	74

'EP300 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S256. Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
EP300 MUTATED	2	12	6
EP300 WILD-TYPE	57	95	73

'EP300 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 1

Table S257. Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
EP300 MUTATED	10	5	6
EP300 WILD-TYPE	68	66	85

'EP300 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S258. Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
EP300 MUTATED	3	3	6	9
EP300 WILD-TYPE	43	54	60	62

'EP300 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S259. Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
EP300 MUTATED	3	1	2
EP300 WILD-TYPE	52	34	24

'EP300 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S260. Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
EP300 MUTATED	2	1	3
EP300 WILD-TYPE	41	45	24

'MAX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0242 (Fisher's exact test), Q value = 1

Table S261. Gene #23: 'MAX MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
MAX MUTATED	9	0	0	2	0
MAX WILD-TYPE	147	23	54	5	2

Figure S83. Get High-res Image Gene #23: 'MAX MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MAX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S262. Gene #23: 'MAX MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
MAX MUTATED	1	3	3
MAX WILD-TYPE	42	36	50

'MAX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S263. Gene #23: 'MAX MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
MAX MUTATED	3	3	2	0	1	0
MAX WILD-TYPE	36	33	35	10	39	24

'MAX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S264. Gene #23: 'MAX MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
MAX MUTATED	3	4	2	0
MAX WILD-TYPE	62	60	38	17

'MAX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S265. Gene #23: 'MAX MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
MAX MUTATED	5	4	2
MAX WILD-TYPE	74	81	79

'MAX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S266. Gene #23: 'MAX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
MAX MUTATED	1	8	2
MAX WILD-TYPE	58	99	77

'MAX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S267. Gene #23: 'MAX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
MAX MUTATED	4	3	4
MAX WILD-TYPE	74	68	87

'MAX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S268. Gene #23: 'MAX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
MAX MUTATED	2	2	2	5
MAX WILD-TYPE	44	55	64	66

'MAX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S269. Gene #23: 'MAX MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
MAX MUTATED	2	2	1
MAX WILD-TYPE	53	33	25

'MAX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S270. Gene #23: 'MAX MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
MAX MUTATED	2	1	2
MAX WILD-TYPE	41	45	25

'SGK1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S271. Gene #24: 'SGK1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
SGK1 MUTATED	2	1	0	0
SGK1 WILD-TYPE	10	17	11	10

'SGK1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S272. Gene #24: 'SGK1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
SGK1 MUTATED	1	0	1	1	0
SGK1 WILD-TYPE	11	10	6	6	15

'SGK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S273. Gene #24: 'SGK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
SGK1 MUTATED	10	3	1	1	0
SGK1 WILD-TYPE	146	20	53	6	2

'SGK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S274. Gene #24: 'SGK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
SGK1 MUTATED	1	1	3
SGK1 WILD-TYPE	42	38	50

'SGK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 1

Table S275. Gene #24: 'SGK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
SGK1 MUTATED	4	5	1	2	1	2
SGK1 WILD-TYPE	35	31	36	8	39	22

'SGK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S276. Gene #24: 'SGK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
SGK1 MUTATED	6	5	3	1
SGK1 WILD-TYPE	59	59	37	16

'SGK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 1

Table S277. Gene #24: 'SGK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
SGK1 MUTATED	4	8	3
SGK1 WILD-TYPE	75	77	78

'SGK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S278. Gene #24: 'SGK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
SGK1 MUTATED	2	8	5
SGK1 WILD-TYPE	57	99	74

'SGK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S279. Gene #24: 'SGK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
SGK1 MUTATED	7	2	5
SGK1 WILD-TYPE	71	69	86

'SGK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S280. Gene #24: 'SGK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
SGK1 MUTATED	4	2	2	6
SGK1 WILD-TYPE	42	55	64	65

'SGK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S281. Gene #24: 'SGK1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
SGK1 MUTATED	3	1	0
SGK1 WILD-TYPE	52	34	26

'SGK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S282. Gene #24: 'SGK1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
SGK1 MUTATED	1	2	1
SGK1 WILD-TYPE	42	44	26

'NRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S283. Gene #25: 'NRAS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
NRAS MUTATED	7	0	1	1	0
NRAS WILD-TYPE	149	23	53	6	2

'NRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S284. Gene #25: 'NRAS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
NRAS MUTATED	0	2	0	0	2	2
NRAS WILD-TYPE	39	34	37	10	38	22

'NRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S285. Gene #25: 'NRAS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
NRAS MUTATED	2	2	0	2
NRAS WILD-TYPE	63	62	40	15

'NRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 1

Table S286. Gene #25: 'NRAS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
NRAS MUTATED	4	3	2
NRAS WILD-TYPE	75	82	79

'NRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S287. Gene #25: 'NRAS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
NRAS MUTATED	2	5	2
NRAS WILD-TYPE	57	102	77

'NRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S288. Gene #25: 'NRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
NRAS MUTATED	4	3	2
NRAS WILD-TYPE	74	68	89

'NRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S289. Gene #25: 'NRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
NRAS MUTATED	1	3	2	3
NRAS WILD-TYPE	45	54	64	68

'KLHL8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S290. Gene #26: 'KLHL8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
KLHL8 MUTATED	2	1	0	0
KLHL8 WILD-TYPE	10	17	11	10

'KLHL8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 1

Table S291. Gene #26: 'KLHL8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
KLHL8 MUTATED	1	0	1	1	0
KLHL8 WILD-TYPE	11	10	6	6	15

'KLHL8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0944 (Fisher's exact test), Q value = 1

Table S292. Gene #26: 'KLHL8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
KLHL8 MUTATED	11	0	0	1	0
KLHL8 WILD-TYPE	145	23	54	6	2

'KLHL8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S293. Gene #26: 'KLHL8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
KLHL8 MUTATED	1	1	4
KLHL8 WILD-TYPE	42	38	49

'KLHL8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S294. Gene #26: 'KLHL8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
KLHL8 MUTATED	2	2	4	0	1	1
KLHL8 WILD-TYPE	37	34	33	10	39	23

'KLHL8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S295. Gene #26: 'KLHL8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
KLHL8 MUTATED	2	4	3	1
KLHL8 WILD-TYPE	63	60	37	16

'KLHL8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S296. Gene #26: 'KLHL8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
KLHL8 MUTATED	3	7	2
KLHL8 WILD-TYPE	76	78	79

'KLHL8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S297. Gene #26: 'KLHL8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
KLHL8 MUTATED	1	9	2
KLHL8 WILD-TYPE	58	98	77

'KLHL8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S298. Gene #26: 'KLHL8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
KLHL8 MUTATED	6	3	3
KLHL8 WILD-TYPE	72	68	88

'KLHL8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S299. Gene #26: 'KLHL8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
KLHL8 MUTATED	2	4	1	5
KLHL8 WILD-TYPE	44	53	65	66

'KLHL8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S300. Gene #26: 'KLHL8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
KLHL8 MUTATED	4	1	0
KLHL8 WILD-TYPE	51	34	26

'KLHL8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S301. Gene #26: 'KLHL8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
KLHL8 MUTATED	2	2	1
KLHL8 WILD-TYPE	41	44	26

'MORC4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S302. Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
MORC4 MUTATED	1	3	0	1
MORC4 WILD-TYPE	11	15	11	9

'MORC4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S303. Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
MORC4 MUTATED	2	1	1	0	1
MORC4 WILD-TYPE	10	9	6	7	14

'MORC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 1

Table S304. Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
MORC4 MUTATED	16	2	1	1	0
MORC4 WILD-TYPE	140	21	53	6	2

'MORC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S305. Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
MORC4 MUTATED	2	5	5
MORC4 WILD-TYPE	41	34	48

'MORC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 1

Table S306. Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
MORC4 MUTATED	6	5	1	1	4	0
MORC4 WILD-TYPE	33	31	36	9	36	24

'MORC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S307. Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
MORC4 MUTATED	9	5	3	0
MORC4 WILD-TYPE	56	59	37	17

'MORC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S308. Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
MORC4 MUTATED	7	10	3
MORC4 WILD-TYPE	72	75	78

'MORC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0194 (Fisher's exact test), Q value = 1

Table S309. Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
MORC4 MUTATED	2	15	3
MORC4 WILD-TYPE	57	92	76

Figure S84. Get High-res Image Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MORC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0186 (Fisher's exact test), Q value = 1

Table S310. Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
MORC4 MUTATED	12	3	4
MORC4 WILD-TYPE	66	68	87

Figure S85. Get High-res Image Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MORC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S311. Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
MORC4 MUTATED	4	5	3	7
MORC4 WILD-TYPE	42	52	63	64

'MORC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S312. Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
MORC4 MUTATED	3	2	4
MORC4 WILD-TYPE	52	33	22

'MORC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S313. Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
MORC4 MUTATED	1	4	4
MORC4 WILD-TYPE	42	42	23

'ZNF781 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S314. Gene #28: 'ZNF781 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
ZNF781 MUTATED	10	0	0	0	0
ZNF781 WILD-TYPE	146	23	54	7	2

'ZNF781 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S315. Gene #28: 'ZNF781 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
ZNF781 MUTATED	1	2	3
ZNF781 WILD-TYPE	42	37	50

'ZNF781 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S316. Gene #28: 'ZNF781 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
ZNF781 MUTATED	3	2	2	1	1	1
ZNF781 WILD-TYPE	36	34	35	9	39	23

'ZNF781 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S317. Gene #28: 'ZNF781 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
ZNF781 MUTATED	4	3	2	1
ZNF781 WILD-TYPE	61	61	38	16

'ZNF781 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 1

Table S318. Gene #28: 'ZNF781 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
ZNF781 MUTATED	3	5	2
ZNF781 WILD-TYPE	76	80	79

'ZNF781 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S319. Gene #28: 'ZNF781 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
ZNF781 MUTATED	1	6	3
ZNF781 WILD-TYPE	58	101	76

'ZNF781 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S320. Gene #28: 'ZNF781 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
ZNF781 MUTATED	3	2	4
ZNF781 WILD-TYPE	75	69	87

'ZNF781 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S321. Gene #28: 'ZNF781 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
ZNF781 MUTATED	2	2	1	4
ZNF781 WILD-TYPE	44	55	65	67

'ZNF781 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S322. Gene #28: 'ZNF781 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
ZNF781 MUTATED	4	1	1
ZNF781 WILD-TYPE	51	34	25

'ZNF781 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S323. Gene #28: 'ZNF781 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
ZNF781 MUTATED	3	1	2
ZNF781 WILD-TYPE	40	45	25

'MKI67 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0242 (Fisher's exact test), Q value = 1

Table S324. Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
MKI67 MUTATED	6	4	0	1
MKI67 WILD-TYPE	6	14	11	9

Figure S86. Get High-res Image Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MKI67 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0152 (Fisher's exact test), Q value = 1

Table S325. Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
MKI67 MUTATED	4	0	2	4	1
MKI67 WILD-TYPE	8	10	5	3	14

Figure S87. Get High-res Image Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MKI67 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00019 (Fisher's exact test), Q value = 0.4

Table S326. Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
MKI67 MUTATED	27	0	0	2	0
MKI67 WILD-TYPE	129	23	54	5	2

Figure S88. Get High-res Image Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MKI67 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 1

Table S327. Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
MKI67 MUTATED	2	3	7
MKI67 WILD-TYPE	41	36	46

'MKI67 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S328. Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
MKI67 MUTATED	7	6	6	3	4	1
MKI67 WILD-TYPE	32	30	31	7	36	23

'MKI67 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S329. Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
MKI67 MUTATED	10	8	8	1
MKI67 WILD-TYPE	55	56	32	16

'MKI67 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0742 (Fisher's exact test), Q value = 1

Table S330. Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
MKI67 MUTATED	9	15	5
MKI67 WILD-TYPE	70	70	76

'MKI67 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0144 (Fisher's exact test), Q value = 1

Table S331. Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
MKI67 MUTATED	3	20	6
MKI67 WILD-TYPE	56	87	73

Figure S89. Get High-res Image Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MKI67 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S332. Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
MKI67 MUTATED	13	5	10
MKI67 WILD-TYPE	65	66	81

'MKI67 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S333. Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
MKI67 MUTATED	3	6	5	14
MKI67 WILD-TYPE	43	51	61	57

'MKI67 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S334. Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
MKI67 MUTATED	6	4	2
MKI67 WILD-TYPE	49	31	24

'MKI67 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S335. Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
MKI67 MUTATED	4	3	5
MKI67 WILD-TYPE	39	43	22

'ING1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0222 (Fisher's exact test), Q value = 1

Table S336. Gene #30: 'ING1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
ING1 MUTATED	11	0	0	2	0
ING1 WILD-TYPE	145	23	54	5	2

Figure S90. Get High-res Image Gene #30: 'ING1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ING1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S337. Gene #30: 'ING1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
ING1 MUTATED	3	1	4
ING1 WILD-TYPE	40	38	49

'ING1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 1

Table S338. Gene #30: 'ING1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
ING1 MUTATED	4	4	3	1	1	0
ING1 WILD-TYPE	35	32	34	9	39	24

'ING1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S339. Gene #30: 'ING1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
ING1 MUTATED	5	5	3	0
ING1 WILD-TYPE	60	59	37	17

'ING1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S340. Gene #30: 'ING1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
ING1 MUTATED	4	4	5
ING1 WILD-TYPE	75	81	76

'ING1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S341. Gene #30: 'ING1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
ING1 MUTATED	1	7	5
ING1 WILD-TYPE	58	100	74

'ING1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S342. Gene #30: 'ING1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
ING1 MUTATED	3	3	6
ING1 WILD-TYPE	75	68	85

'ING1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S343. Gene #30: 'ING1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
ING1 MUTATED	1	1	3	7
ING1 WILD-TYPE	45	56	63	64

'ING1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S344. Gene #30: 'ING1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
ING1 MUTATED	3	1	3
ING1 WILD-TYPE	52	34	23

'ING1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S345. Gene #30: 'ING1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
ING1 MUTATED	1	2	4
ING1 WILD-TYPE	42	44	23

'INTS7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S346. Gene #31: 'INTS7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
INTS7 MUTATED	2	1	0	0
INTS7 WILD-TYPE	10	17	11	10

'INTS7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S347. Gene #31: 'INTS7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
INTS7 MUTATED	1	0	1	1	0
INTS7 WILD-TYPE	11	10	6	6	15

'INTS7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S348. Gene #31: 'INTS7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
INTS7 MUTATED	8	0	0	0	0
INTS7 WILD-TYPE	148	23	54	7	2

'INTS7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S349. Gene #31: 'INTS7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
INTS7 MUTATED	1	4	0	1	2	0
INTS7 WILD-TYPE	38	32	37	9	38	24

'INTS7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S350. Gene #31: 'INTS7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
INTS7 MUTATED	4	3	1	0
INTS7 WILD-TYPE	61	61	39	17

'INTS7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0935 (Fisher's exact test), Q value = 1

Table S351. Gene #31: 'INTS7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
INTS7 MUTATED	3	5	0
INTS7 WILD-TYPE	76	80	81

'INTS7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00433 (Fisher's exact test), Q value = 1

Table S352. Gene #31: 'INTS7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
INTS7 MUTATED	0	8	0
INTS7 WILD-TYPE	59	99	79

Figure S91. Get High-res Image Gene #31: 'INTS7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'INTS7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0324 (Fisher's exact test), Q value = 1

Table S353. Gene #31: 'INTS7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
INTS7 MUTATED	5	2	0
INTS7 WILD-TYPE	73	69	91

Figure S92. Get High-res Image Gene #31: 'INTS7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'INTS7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S354. Gene #31: 'INTS7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
INTS7 MUTATED	2	2	0	3
INTS7 WILD-TYPE	44	55	66	68

'CCDC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S355. Gene #32: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
CCDC6 MUTATED	4	0	2	0	0
CCDC6 WILD-TYPE	152	23	52	7	2

'CCDC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 1

Table S356. Gene #32: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
CCDC6 MUTATED	3	1	1
CCDC6 WILD-TYPE	40	38	52

'CCDC6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S357. Gene #32: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
CCDC6 MUTATED	2	0	1	1	0	1
CCDC6 WILD-TYPE	37	36	36	9	40	23

'CCDC6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S358. Gene #32: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
CCDC6 MUTATED	1	1	2	1
CCDC6 WILD-TYPE	64	63	38	16

'CCDC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S359. Gene #32: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
CCDC6 MUTATED	3	1	2
CCDC6 WILD-TYPE	76	84	79

'CCDC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S360. Gene #32: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
CCDC6 MUTATED	3	1	2
CCDC6 WILD-TYPE	56	106	77

'CCDC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0956 (Fisher's exact test), Q value = 1

Table S361. Gene #32: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
CCDC6 MUTATED	0	4	2
CCDC6 WILD-TYPE	78	67	89

'CCDC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S362. Gene #32: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
CCDC6 MUTATED	0	4	1	1
CCDC6 WILD-TYPE	46	53	65	70

'CCDC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S363. Gene #32: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
CCDC6 MUTATED	2	3	0
CCDC6 WILD-TYPE	53	32	26

'CCDC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 1

Table S364. Gene #32: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
CCDC6 MUTATED	3	1	1
CCDC6 WILD-TYPE	40	45	26

'EIF2S2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 1

Table S365. Gene #33: 'EIF2S2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
EIF2S2 MUTATED	9	0	0	0	0
EIF2S2 WILD-TYPE	147	23	54	7	2

'EIF2S2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S366. Gene #33: 'EIF2S2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
EIF2S2 MUTATED	1	1	3
EIF2S2 WILD-TYPE	42	38	50

'EIF2S2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S367. Gene #33: 'EIF2S2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
EIF2S2 MUTATED	2	2	1	1	2	1
EIF2S2 WILD-TYPE	37	34	36	9	38	23

'EIF2S2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S368. Gene #33: 'EIF2S2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
EIF2S2 MUTATED	3	5	1	0
EIF2S2 WILD-TYPE	62	59	39	17

'EIF2S2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S369. Gene #33: 'EIF2S2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
EIF2S2 MUTATED	3	5	1
EIF2S2 WILD-TYPE	76	80	80

'EIF2S2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 1

Table S370. Gene #33: 'EIF2S2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
EIF2S2 MUTATED	2	6	1
EIF2S2 WILD-TYPE	57	101	78

'EIF2S2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S371. Gene #33: 'EIF2S2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
EIF2S2 MUTATED	4	3	2
EIF2S2 WILD-TYPE	74	68	89

'EIF2S2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S372. Gene #33: 'EIF2S2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
EIF2S2 MUTATED	2	4	1	2
EIF2S2 WILD-TYPE	44	53	65	69

'EIF2S2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S373. Gene #33: 'EIF2S2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
EIF2S2 MUTATED	2	2	0
EIF2S2 WILD-TYPE	53	33	26

'EIF2S2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S374. Gene #33: 'EIF2S2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
EIF2S2 MUTATED	1	1	2
EIF2S2 WILD-TYPE	42	45	25

'RBBP6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S375. Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
RBBP6 MUTATED	1	3	0	1
RBBP6 WILD-TYPE	11	15	11	9

'RBBP6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.021 (Fisher's exact test), Q value = 1

Table S376. Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
RBBP6 MUTATED	4	0	0	1	0
RBBP6 WILD-TYPE	8	10	7	6	15

Figure S93. Get High-res Image Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'RBBP6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00263 (Fisher's exact test), Q value = 1

Table S377. Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
RBBP6 MUTATED	20	0	0	2	0
RBBP6 WILD-TYPE	136	23	54	5	2

Figure S94. Get High-res Image Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RBBP6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S378. Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
RBBP6 MUTATED	3	3	5
RBBP6 WILD-TYPE	40	36	48

'RBBP6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S379. Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
RBBP6 MUTATED	4	6	4	1	4	1
RBBP6 WILD-TYPE	35	30	33	9	36	23

'RBBP6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.957 (Fisher's exact test), Q value = 1

Table S380. Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
RBBP6 MUTATED	7	8	4	1
RBBP6 WILD-TYPE	58	56	36	16

'RBBP6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0577 (Fisher's exact test), Q value = 1

Table S381. Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
RBBP6 MUTATED	7	12	3
RBBP6 WILD-TYPE	72	73	78

'RBBP6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00917 (Fisher's exact test), Q value = 1

Table S382. Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
RBBP6 MUTATED	1	16	5
RBBP6 WILD-TYPE	58	91	74

Figure S95. Get High-res Image Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RBBP6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S383. Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
RBBP6 MUTATED	9	5	7
RBBP6 WILD-TYPE	69	66	84

'RBBP6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0785 (Fisher's exact test), Q value = 1

Table S384. Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
RBBP6 MUTATED	4	4	2	11
RBBP6 WILD-TYPE	42	53	64	60

'RBBP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 1

Table S385. Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
RBBP6 MUTATED	5	2	3
RBBP6 WILD-TYPE	50	33	23

'RBBP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0289 (Fisher's exact test), Q value = 1

Table S386. Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
RBBP6 MUTATED	2	2	6
RBBP6 WILD-TYPE	41	44	21

Figure S96. Get High-res Image Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SOS1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S387. Gene #35: 'SOS1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
SOS1 MUTATED	1	1	2	0
SOS1 WILD-TYPE	11	17	9	10

'SOS1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S388. Gene #35: 'SOS1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
SOS1 MUTATED	1	0	1	1	1
SOS1 WILD-TYPE	11	10	6	6	14

'SOS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S389. Gene #35: 'SOS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
SOS1 MUTATED	11	1	0	0	0
SOS1 WILD-TYPE	145	22	54	7	2

'SOS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S390. Gene #35: 'SOS1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
SOS1 MUTATED	2	0	2
SOS1 WILD-TYPE	41	39	51

'SOS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 1

Table S391. Gene #35: 'SOS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
SOS1 MUTATED	2	4	0	0	3	0
SOS1 WILD-TYPE	37	32	37	10	37	24

'SOS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S392. Gene #35: 'SOS1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
SOS1 MUTATED	4	5	0	0
SOS1 WILD-TYPE	61	59	40	17

'SOS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S393. Gene #35: 'SOS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
SOS1 MUTATED	4	2	4
SOS1 WILD-TYPE	75	83	77

'SOS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S394. Gene #35: 'SOS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
SOS1 MUTATED	1	5	4
SOS1 WILD-TYPE	58	102	75

'SOS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S395. Gene #35: 'SOS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
SOS1 MUTATED	6	1	4
SOS1 WILD-TYPE	72	70	87

'SOS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.411 (Fisher's exact test), Q value = 1

Table S396. Gene #35: 'SOS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
SOS1 MUTATED	1	2	2	6
SOS1 WILD-TYPE	45	55	64	65

'SOS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S397. Gene #35: 'SOS1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
SOS1 MUTATED	2	1	1
SOS1 WILD-TYPE	53	34	25

'SOS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S398. Gene #35: 'SOS1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
SOS1 MUTATED	1	1	2
SOS1 WILD-TYPE	42	45	25

'NAT1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S399. Gene #36: 'NAT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
NAT1 MUTATED	2	1	0	0
NAT1 WILD-TYPE	10	17	11	10

'NAT1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0796 (Fisher's exact test), Q value = 1

Table S400. Gene #36: 'NAT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
NAT1 MUTATED	1	0	0	2	0
NAT1 WILD-TYPE	11	10	7	5	15

'NAT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S401. Gene #36: 'NAT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
NAT1 MUTATED	6	0	0	1	0
NAT1 WILD-TYPE	150	23	54	6	2

'NAT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S402. Gene #36: 'NAT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
NAT1 MUTATED	0	1	3	1	0	1
NAT1 WILD-TYPE	39	35	34	9	40	23

'NAT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0238 (Fisher's exact test), Q value = 1

Table S403. Gene #36: 'NAT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
NAT1 MUTATED	1	0	4	1
NAT1 WILD-TYPE	64	64	36	16

Figure S97. Get High-res Image Gene #36: 'NAT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'NAT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S404. Gene #36: 'NAT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
NAT1 MUTATED	2	4	1
NAT1 WILD-TYPE	77	81	80

'NAT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S405. Gene #36: 'NAT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
NAT1 MUTATED	0	5	2
NAT1 WILD-TYPE	59	102	77

'NAT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S406. Gene #36: 'NAT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
NAT1 MUTATED	2	2	3
NAT1 WILD-TYPE	76	69	88

'NAT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S407. Gene #36: 'NAT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
NAT1 MUTATED	1	1	1	4
NAT1 WILD-TYPE	45	56	65	67

'NAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S408. Gene #36: 'NAT1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
NAT1 MUTATED	3	0	0
NAT1 WILD-TYPE	52	35	26

'NAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0602 (Fisher's exact test), Q value = 1

Table S409. Gene #36: 'NAT1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
NAT1 MUTATED	3	0	0
NAT1 WILD-TYPE	40	46	27

'ADNP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0828 (Fisher's exact test), Q value = 1

Table S410. Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
ADNP MUTATED	4	1	1	0
ADNP WILD-TYPE	8	17	10	10

'ADNP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S411. Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
ADNP MUTATED	1	0	2	2	1
ADNP WILD-TYPE	11	10	5	5	14

'ADNP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0589 (Fisher's exact test), Q value = 1

Table S412. Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
ADNP MUTATED	13	0	0	1	0
ADNP WILD-TYPE	143	23	54	6	2

'ADNP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S413. Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
ADNP MUTATED	2	1	3
ADNP WILD-TYPE	41	38	50

'ADNP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S414. Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
ADNP MUTATED	4	3	2	2	2	1
ADNP WILD-TYPE	35	33	35	8	38	23

'ADNP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.678 (Fisher's exact test), Q value = 1

Table S415. Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
ADNP MUTATED	3	6	4	1
ADNP WILD-TYPE	62	58	36	16

'ADNP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 1

Table S416. Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
ADNP MUTATED	4	7	3
ADNP WILD-TYPE	75	78	78

'ADNP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 1

Table S417. Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
ADNP MUTATED	1	9	4
ADNP WILD-TYPE	58	98	75

'ADNP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S418. Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
ADNP MUTATED	6	3	5
ADNP WILD-TYPE	72	68	86

'ADNP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S419. Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
ADNP MUTATED	3	3	3	5
ADNP WILD-TYPE	43	54	63	66

'ADNP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S420. Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
ADNP MUTATED	2	2	1
ADNP WILD-TYPE	53	33	25

'ADNP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0416 (Fisher's exact test), Q value = 1

Table S421. Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
ADNP MUTATED	2	0	3
ADNP WILD-TYPE	41	46	24

Figure S98. Get High-res Image Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'VPS11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S422. Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
VPS11 MUTATED	2	1	0	0
VPS11 WILD-TYPE	10	17	11	10

'VPS11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S423. Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
VPS11 MUTATED	1	0	1	1	0
VPS11 WILD-TYPE	11	10	6	6	15

'VPS11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0807 (Fisher's exact test), Q value = 1

Table S424. Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
VPS11 MUTATED	9	0	1	2	0
VPS11 WILD-TYPE	147	23	53	5	2

'VPS11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S425. Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
VPS11 MUTATED	2	1	2
VPS11 WILD-TYPE	41	38	51

'VPS11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S426. Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
VPS11 MUTATED	3	2	2	2	1	0
VPS11 WILD-TYPE	36	34	35	8	39	24

'VPS11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S427. Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
VPS11 MUTATED	4	2	4	0
VPS11 WILD-TYPE	61	62	36	17

'VPS11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S428. Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
VPS11 MUTATED	4	6	2
VPS11 WILD-TYPE	75	79	79

'VPS11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S429. Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
VPS11 MUTATED	2	8	2
VPS11 WILD-TYPE	57	99	77

'VPS11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S430. Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
VPS11 MUTATED	4	5	3
VPS11 WILD-TYPE	74	66	88

'VPS11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0427 (Fisher's exact test), Q value = 1

Table S431. Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
VPS11 MUTATED	0	5	1	6
VPS11 WILD-TYPE	46	52	65	65

Figure S99. Get High-res Image Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'VPS11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S432. Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
VPS11 MUTATED	1	2	0
VPS11 WILD-TYPE	54	33	26

'VPS11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0611 (Fisher's exact test), Q value = 1

Table S433. Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
VPS11 MUTATED	3	0	0
VPS11 WILD-TYPE	40	46	27

'L1TD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0133 (Fisher's exact test), Q value = 1

Table S434. Gene #39: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
L1TD1 MUTATED	14	0	0	2	0
L1TD1 WILD-TYPE	142	23	54	5	2

Figure S100. Get High-res Image Gene #39: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'L1TD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S435. Gene #39: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
L1TD1 MUTATED	2	1	7
L1TD1 WILD-TYPE	41	38	46

'L1TD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0744 (Fisher's exact test), Q value = 1

Table S436. Gene #39: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
L1TD1 MUTATED	3	5	2	2	0	1
L1TD1 WILD-TYPE	36	31	35	8	40	23

'L1TD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.974 (Fisher's exact test), Q value = 1

Table S437. Gene #39: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
L1TD1 MUTATED	4	5	3	1
L1TD1 WILD-TYPE	61	59	37	16

'L1TD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 1

Table S438. Gene #39: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
L1TD1 MUTATED	7	6	3
L1TD1 WILD-TYPE	72	79	78

'L1TD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0935 (Fisher's exact test), Q value = 1

Table S439. Gene #39: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
L1TD1 MUTATED	1	11	4
L1TD1 WILD-TYPE	58	96	75

'L1TD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S440. Gene #39: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
L1TD1 MUTATED	6	4	5
L1TD1 WILD-TYPE	72	67	86

'L1TD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S441. Gene #39: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
L1TD1 MUTATED	3	3	2	7
L1TD1 WILD-TYPE	43	54	64	64

'L1TD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S442. Gene #39: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
L1TD1 MUTATED	5	2	1
L1TD1 WILD-TYPE	50	33	25

'L1TD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S443. Gene #39: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
L1TD1 MUTATED	2	2	4
L1TD1 WILD-TYPE	41	44	23

'MARK3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S444. Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
MARK3 MUTATED	3	1	0	0
MARK3 WILD-TYPE	9	17	11	10

'MARK3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.091 (Fisher's exact test), Q value = 1

Table S445. Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
MARK3 MUTATED	1	0	2	1	0
MARK3 WILD-TYPE	11	10	5	6	15

'MARK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0246 (Fisher's exact test), Q value = 1

Table S446. Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
MARK3 MUTATED	9	0	0	2	0
MARK3 WILD-TYPE	147	23	54	5	2

Figure S101. Get High-res Image Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MARK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0376 (Fisher's exact test), Q value = 1

Table S447. Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
MARK3 MUTATED	0	0	4
MARK3 WILD-TYPE	43	39	49

Figure S102. Get High-res Image Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MARK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0405 (Fisher's exact test), Q value = 1

Table S448. Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
MARK3 MUTATED	1	6	1	1	1	0
MARK3 WILD-TYPE	38	30	36	9	39	24

Figure S103. Get High-res Image Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MARK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S449. Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
MARK3 MUTATED	5	4	1	0
MARK3 WILD-TYPE	60	60	39	17

'MARK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S450. Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
MARK3 MUTATED	4	5	2
MARK3 WILD-TYPE	75	80	79

'MARK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0635 (Fisher's exact test), Q value = 1

Table S451. Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
MARK3 MUTATED	0	8	3
MARK3 WILD-TYPE	59	99	76

'MARK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S452. Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
MARK3 MUTATED	6	2	2
MARK3 WILD-TYPE	72	69	89

'MARK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00427 (Fisher's exact test), Q value = 1

Table S453. Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
MARK3 MUTATED	1	1	0	8
MARK3 WILD-TYPE	45	56	66	63

Figure S104. Get High-res Image Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CTNND1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S454. Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
CTNND1 MUTATED	3	1	1	0
CTNND1 WILD-TYPE	9	17	10	10

'CTNND1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S455. Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
CTNND1 MUTATED	1	0	2	1	1
CTNND1 WILD-TYPE	11	10	5	6	14

'CTNND1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0355 (Fisher's exact test), Q value = 1

Table S456. Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
CTNND1 MUTATED	16	0	1	2	0
CTNND1 WILD-TYPE	140	23	53	5	2

Figure S105. Get High-res Image Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CTNND1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S457. Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
CTNND1 MUTATED	3	2	4
CTNND1 WILD-TYPE	40	37	49

'CTNND1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0139 (Fisher's exact test), Q value = 1

Table S458. Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
CTNND1 MUTATED	3	4	1	4	4	0
CTNND1 WILD-TYPE	36	32	36	6	36	24

Figure S106. Get High-res Image Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CTNND1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S459. Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
CTNND1 MUTATED	6	6	4	0
CTNND1 WILD-TYPE	59	58	36	17

'CTNND1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S460. Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
CTNND1 MUTATED	8	5	6
CTNND1 WILD-TYPE	71	80	75

'CTNND1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.296 (Fisher's exact test), Q value = 1

Table S461. Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
CTNND1 MUTATED	2	11	6
CTNND1 WILD-TYPE	57	96	73

'CTNND1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S462. Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
CTNND1 MUTATED	5	6	7
CTNND1 WILD-TYPE	73	65	84

'CTNND1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.09 (Fisher's exact test), Q value = 1

Table S463. Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
CTNND1 MUTATED	1	4	3	10
CTNND1 WILD-TYPE	45	53	63	61

'CTNND1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 1

Table S464. Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
CTNND1 MUTATED	2	3	3
CTNND1 WILD-TYPE	53	32	23

'CTNND1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.517 (Fisher's exact test), Q value = 1

Table S465. Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
CTNND1 MUTATED	3	2	3
CTNND1 WILD-TYPE	40	44	24

'GFAP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0294 (Fisher's exact test), Q value = 1

Table S466. Gene #42: 'GFAP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
GFAP MUTATED	7	0	0	2	0
GFAP WILD-TYPE	149	23	54	5	2

Figure S107. Get High-res Image Gene #42: 'GFAP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GFAP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S467. Gene #42: 'GFAP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
GFAP MUTATED	2	0	3
GFAP WILD-TYPE	41	39	50

'GFAP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S468. Gene #42: 'GFAP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
GFAP MUTATED	4	2	1	0	0	1
GFAP WILD-TYPE	35	34	36	10	40	23

'GFAP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S469. Gene #42: 'GFAP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
GFAP MUTATED	2	4	1	1
GFAP WILD-TYPE	63	60	39	16

'GFAP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0697 (Fisher's exact test), Q value = 1

Table S470. Gene #42: 'GFAP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
GFAP MUTATED	4	5	0
GFAP WILD-TYPE	75	80	81

'GFAP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.502 (Fisher's exact test), Q value = 1

Table S471. Gene #42: 'GFAP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
GFAP MUTATED	1	6	2
GFAP WILD-TYPE	58	101	77

'GFAP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S472. Gene #42: 'GFAP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
GFAP MUTATED	5	2	2
GFAP WILD-TYPE	73	69	89

'GFAP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0377 (Fisher's exact test), Q value = 1

Table S473. Gene #42: 'GFAP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
GFAP MUTATED	2	1	0	6
GFAP WILD-TYPE	44	56	66	65

Figure S108. Get High-res Image Gene #42: 'GFAP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GFAP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S474. Gene #42: 'GFAP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
GFAP MUTATED	1	1	1
GFAP WILD-TYPE	54	34	25

'GFAP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S475. Gene #42: 'GFAP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
GFAP MUTATED	1	0	2
GFAP WILD-TYPE	42	46	25

'PPP2R1A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0755 (Fisher's exact test), Q value = 1

Table S476. Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
PPP2R1A MUTATED	3	5	0	0
PPP2R1A WILD-TYPE	9	13	11	10

'PPP2R1A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0567 (Fisher's exact test), Q value = 1

Table S477. Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
PPP2R1A MUTATED	4	2	0	2	0
PPP2R1A WILD-TYPE	8	8	7	5	15

'PPP2R1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.043 (Fisher's exact test), Q value = 1

Table S478. Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
PPP2R1A MUTATED	11	2	12	0	0
PPP2R1A WILD-TYPE	145	21	42	7	2

Figure S109. Get High-res Image Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PPP2R1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 1

Table S479. Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
PPP2R1A MUTATED	10	1	5
PPP2R1A WILD-TYPE	33	38	48

Figure S110. Get High-res Image Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PPP2R1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S480. Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
PPP2R1A MUTATED	3	7	2	0	2	4
PPP2R1A WILD-TYPE	36	29	35	10	38	20

'PPP2R1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S481. Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
PPP2R1A MUTATED	8	5	4	1
PPP2R1A WILD-TYPE	57	59	36	16

'PPP2R1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00223 (Fisher's exact test), Q value = 1

Table S482. Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
PPP2R1A MUTATED	17	6	4
PPP2R1A WILD-TYPE	62	79	77

Figure S111. Get High-res Image Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PPP2R1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00222 (Fisher's exact test), Q value = 1

Table S483. Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
PPP2R1A MUTATED	14	9	4
PPP2R1A WILD-TYPE	45	98	75

Figure S112. Get High-res Image Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PPP2R1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0144 (Fisher's exact test), Q value = 1

Table S484. Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
PPP2R1A MUTATED	6	14	5
PPP2R1A WILD-TYPE	72	57	86

Figure S113. Get High-res Image Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PPP2R1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00081 (Fisher's exact test), Q value = 1

Table S485. Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
PPP2R1A MUTATED	2	14	2	7
PPP2R1A WILD-TYPE	44	43	64	64

Figure S114. Get High-res Image Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PPP2R1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0947 (Fisher's exact test), Q value = 1

Table S486. Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
PPP2R1A MUTATED	4	8	4
PPP2R1A WILD-TYPE	51	27	22

'PPP2R1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S487. Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
PPP2R1A MUTATED	7	3	6
PPP2R1A WILD-TYPE	36	43	21

'C9ORF102 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.537 (Fisher's exact test), Q value = 1

Table S488. Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
C9ORF102 MUTATED	2	2	0	0
C9ORF102 WILD-TYPE	10	16	11	10

'C9ORF102 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 1

Table S489. Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
C9ORF102 MUTATED	2	0	1	1	0
C9ORF102 WILD-TYPE	10	10	6	6	15

'C9ORF102 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 1

Table S490. Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
C9ORF102 MUTATED	14	0	0	2	0
C9ORF102 WILD-TYPE	142	23	54	5	2

Figure S115. Get High-res Image Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C9ORF102 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S491. Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
C9ORF102 MUTATED	2	1	4
C9ORF102 WILD-TYPE	41	38	49

'C9ORF102 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S492. Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
C9ORF102 MUTATED	4	4	2	1	2	1
C9ORF102 WILD-TYPE	35	32	35	9	38	23

'C9ORF102 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S493. Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
C9ORF102 MUTATED	4	6	3	1
C9ORF102 WILD-TYPE	61	58	37	16

'C9ORF102 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S494. Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
C9ORF102 MUTATED	6	8	2
C9ORF102 WILD-TYPE	73	77	79

'C9ORF102 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0394 (Fisher's exact test), Q value = 1

Table S495. Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
C9ORF102 MUTATED	1	12	3
C9ORF102 WILD-TYPE	58	95	76

Figure S116. Get High-res Image Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C9ORF102 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0904 (Fisher's exact test), Q value = 1

Table S496. Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
C9ORF102 MUTATED	9	3	3
C9ORF102 WILD-TYPE	69	68	88

'C9ORF102 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S497. Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
C9ORF102 MUTATED	3	4	1	7
C9ORF102 WILD-TYPE	43	53	65	64

'C9ORF102 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S498. Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
C9ORF102 MUTATED	3	1	1
C9ORF102 WILD-TYPE	52	34	25

'C9ORF102 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S499. Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
C9ORF102 MUTATED	2	1	2
C9ORF102 WILD-TYPE	41	45	25

'EIF4A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S500. Gene #45: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
EIF4A2 MUTATED	6	0	0	1	0
EIF4A2 WILD-TYPE	150	23	54	6	2

'EIF4A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S501. Gene #45: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
EIF4A2 MUTATED	1	0	2
EIF4A2 WILD-TYPE	42	39	51

'EIF4A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S502. Gene #45: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
EIF4A2 MUTATED	2	1	1	1	2	0
EIF4A2 WILD-TYPE	37	35	36	9	38	24

'EIF4A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S503. Gene #45: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
EIF4A2 MUTATED	1	4	2	0
EIF4A2 WILD-TYPE	64	60	38	17

'EIF4A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0637 (Fisher's exact test), Q value = 1

Table S504. Gene #45: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
EIF4A2 MUTATED	2	5	0
EIF4A2 WILD-TYPE	77	80	81

'EIF4A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0509 (Fisher's exact test), Q value = 1

Table S505. Gene #45: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
EIF4A2 MUTATED	1	6	0
EIF4A2 WILD-TYPE	58	101	79

'EIF4A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0321 (Fisher's exact test), Q value = 1

Table S506. Gene #45: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
EIF4A2 MUTATED	5	2	0
EIF4A2 WILD-TYPE	73	69	91

Figure S117. Get High-res Image Gene #45: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'EIF4A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S507. Gene #45: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
EIF4A2 MUTATED	2	3	0	2
EIF4A2 WILD-TYPE	44	54	66	69

'EIF4A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S508. Gene #45: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
EIF4A2 MUTATED	1	2	0
EIF4A2 WILD-TYPE	54	33	26

'EIF4A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S509. Gene #45: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
EIF4A2 MUTATED	1	0	2
EIF4A2 WILD-TYPE	42	46	25

'ZNF471 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S510. Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
ZNF471 MUTATED	2	1	1	0
ZNF471 WILD-TYPE	10	17	10	10

'ZNF471 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0914 (Fisher's exact test), Q value = 1

Table S511. Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
ZNF471 MUTATED	1	0	2	1	0
ZNF471 WILD-TYPE	11	10	5	6	15

'ZNF471 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0454 (Fisher's exact test), Q value = 1

Table S512. Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
ZNF471 MUTATED	14	0	0	1	0
ZNF471 WILD-TYPE	142	23	54	6	2

Figure S118. Get High-res Image Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF471 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S513. Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
ZNF471 MUTATED	1	2	4
ZNF471 WILD-TYPE	42	37	49

'ZNF471 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S514. Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
ZNF471 MUTATED	4	4	2	1	1	1
ZNF471 WILD-TYPE	35	32	35	9	39	23

'ZNF471 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S515. Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
ZNF471 MUTATED	6	3	3	1
ZNF471 WILD-TYPE	59	61	37	16

'ZNF471 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S516. Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
ZNF471 MUTATED	5	7	3
ZNF471 WILD-TYPE	74	78	78

'ZNF471 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0171 (Fisher's exact test), Q value = 1

Table S517. Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
ZNF471 MUTATED	0	11	4
ZNF471 WILD-TYPE	59	96	75

Figure S119. Get High-res Image Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF471 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S518. Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
ZNF471 MUTATED	8	3	3
ZNF471 WILD-TYPE	70	68	88

'ZNF471 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0855 (Fisher's exact test), Q value = 1

Table S519. Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
ZNF471 MUTATED	3	2	1	8
ZNF471 WILD-TYPE	43	55	65	63

'ZNF471 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S520. Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
ZNF471 MUTATED	4	1	1
ZNF471 WILD-TYPE	51	34	25

'ZNF471 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S521. Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
ZNF471 MUTATED	3	1	2
ZNF471 WILD-TYPE	40	45	25

'CDK17 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0462 (Fisher's exact test), Q value = 1

Table S522. Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
CDK17 MUTATED	3	0	2	0
CDK17 WILD-TYPE	9	18	9	10

Figure S120. Get High-res Image Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CDK17 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00259 (Fisher's exact test), Q value = 1

Table S523. Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
CDK17 MUTATED	0	0	3	2	0
CDK17 WILD-TYPE	12	10	4	5	15

Figure S121. Get High-res Image Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CDK17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0646 (Fisher's exact test), Q value = 1

Table S524. Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
CDK17 MUTATED	11	0	1	2	0
CDK17 WILD-TYPE	145	23	53	5	2

'CDK17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0604 (Fisher's exact test), Q value = 1

Table S525. Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
CDK17 MUTATED	0	1	5
CDK17 WILD-TYPE	43	38	48

'CDK17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S526. Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
CDK17 MUTATED	4	1	3	0	2	1
CDK17 WILD-TYPE	35	35	34	10	38	23

'CDK17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S527. Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
CDK17 MUTATED	4	4	3	0
CDK17 WILD-TYPE	61	60	37	17

'CDK17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S528. Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
CDK17 MUTATED	5	4	4
CDK17 WILD-TYPE	74	81	77

'CDK17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S529. Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
CDK17 MUTATED	3	6	4
CDK17 WILD-TYPE	56	101	75

'CDK17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S530. Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
CDK17 MUTATED	6	4	4
CDK17 WILD-TYPE	72	67	87

'CDK17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0354 (Fisher's exact test), Q value = 1

Table S531. Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
CDK17 MUTATED	1	3	1	9
CDK17 WILD-TYPE	45	54	65	62

Figure S122. Get High-res Image Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CDK17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S532. Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
CDK17 MUTATED	3	2	1
CDK17 WILD-TYPE	52	33	25

'CDK17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 1

Table S533. Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
CDK17 MUTATED	3	1	2
CDK17 WILD-TYPE	40	45	25

'SIN3A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.02 (Fisher's exact test), Q value = 1

Table S534. Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
SIN3A MUTATED	16	2	0	2	0
SIN3A WILD-TYPE	140	21	54	5	2

Figure S123. Get High-res Image Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SIN3A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S535. Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
SIN3A MUTATED	4	2	8
SIN3A WILD-TYPE	39	37	45

'SIN3A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00415 (Fisher's exact test), Q value = 1

Table S536. Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
SIN3A MUTATED	3	9	3	2	0	1
SIN3A WILD-TYPE	36	27	34	8	40	23

Figure S124. Get High-res Image Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'SIN3A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S537. Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
SIN3A MUTATED	7	4	6	1
SIN3A WILD-TYPE	58	60	34	16

'SIN3A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0213 (Fisher's exact test), Q value = 1

Table S538. Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
SIN3A MUTATED	7	12	2
SIN3A WILD-TYPE	72	73	79

Figure S125. Get High-res Image Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SIN3A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00143 (Fisher's exact test), Q value = 1

Table S539. Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
SIN3A MUTATED	1	17	3
SIN3A WILD-TYPE	58	90	76

Figure S126. Get High-res Image Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SIN3A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0313 (Fisher's exact test), Q value = 1

Table S540. Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
SIN3A MUTATED	11	7	3
SIN3A WILD-TYPE	67	64	88

Figure S127. Get High-res Image Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SIN3A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00517 (Fisher's exact test), Q value = 1

Table S541. Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
SIN3A MUTATED	3	4	1	13
SIN3A WILD-TYPE	43	53	65	58

Figure S128. Get High-res Image Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SIN3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S542. Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
SIN3A MUTATED	3	4	3
SIN3A WILD-TYPE	52	31	23

'SIN3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 1

Table S543. Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
SIN3A MUTATED	4	2	4
SIN3A WILD-TYPE	39	44	23

'ZNF485 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S544. Gene #49: 'ZNF485 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
ZNF485 MUTATED	1	1	1	0
ZNF485 WILD-TYPE	11	17	10	10

'ZNF485 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0792 (Fisher's exact test), Q value = 1

Table S545. Gene #49: 'ZNF485 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
ZNF485 MUTATED	1	0	2	0	0
ZNF485 WILD-TYPE	11	10	5	7	15

'ZNF485 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S546. Gene #49: 'ZNF485 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
ZNF485 MUTATED	9	0	0	0	0
ZNF485 WILD-TYPE	147	23	54	7	2

'ZNF485 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S547. Gene #49: 'ZNF485 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
ZNF485 MUTATED	1	1	2
ZNF485 WILD-TYPE	42	38	51

'ZNF485 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S548. Gene #49: 'ZNF485 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
ZNF485 MUTATED	2	3	0	1	1	1
ZNF485 WILD-TYPE	37	33	37	9	39	23

'ZNF485 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S549. Gene #49: 'ZNF485 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
ZNF485 MUTATED	4	2	1	1
ZNF485 WILD-TYPE	61	62	39	16

'ZNF485 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S550. Gene #49: 'ZNF485 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
ZNF485 MUTATED	4	3	2
ZNF485 WILD-TYPE	75	82	79

'ZNF485 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S551. Gene #49: 'ZNF485 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
ZNF485 MUTATED	2	4	3
ZNF485 WILD-TYPE	57	103	76

'ZNF485 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S552. Gene #49: 'ZNF485 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
ZNF485 MUTATED	5	2	2
ZNF485 WILD-TYPE	73	69	89

'ZNF485 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.701 (Fisher's exact test), Q value = 1

Table S553. Gene #49: 'ZNF485 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
ZNF485 MUTATED	2	3	1	3
ZNF485 WILD-TYPE	44	54	65	68

'ZNF485 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S554. Gene #49: 'ZNF485 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
ZNF485 MUTATED	1	2	0
ZNF485 WILD-TYPE	54	33	26

'ZNF485 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S555. Gene #49: 'ZNF485 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
ZNF485 MUTATED	2	0	1
ZNF485 WILD-TYPE	41	46	26

'RSBN1L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 1

Table S556. Gene #50: 'RSBN1L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
RSBN1L MUTATED	3	1	0	0
RSBN1L WILD-TYPE	9	17	11	10

'RSBN1L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0925 (Fisher's exact test), Q value = 1

Table S557. Gene #50: 'RSBN1L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
RSBN1L MUTATED	1	0	1	2	0
RSBN1L WILD-TYPE	11	10	6	5	15

'RSBN1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0826 (Fisher's exact test), Q value = 1

Table S558. Gene #50: 'RSBN1L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
RSBN1L MUTATED	9	0	1	2	0
RSBN1L WILD-TYPE	147	23	53	5	2

'RSBN1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S559. Gene #50: 'RSBN1L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
RSBN1L MUTATED	2	0	2
RSBN1L WILD-TYPE	41	39	51

'RSBN1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00692 (Fisher's exact test), Q value = 1

Table S560. Gene #50: 'RSBN1L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
RSBN1L MUTATED	4	3	0	3	1	0
RSBN1L WILD-TYPE	35	33	37	7	39	24

Figure S129. Get High-res Image Gene #50: 'RSBN1L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'RSBN1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S561. Gene #50: 'RSBN1L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
RSBN1L MUTATED	5	3	3	0
RSBN1L WILD-TYPE	60	61	37	17

'RSBN1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S562. Gene #50: 'RSBN1L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
RSBN1L MUTATED	6	4	2
RSBN1L WILD-TYPE	73	81	79

'RSBN1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S563. Gene #50: 'RSBN1L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
RSBN1L MUTATED	1	9	2
RSBN1L WILD-TYPE	58	98	77

'RSBN1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S564. Gene #50: 'RSBN1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
RSBN1L MUTATED	5	4	2
RSBN1L WILD-TYPE	73	67	89

'RSBN1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S565. Gene #50: 'RSBN1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
RSBN1L MUTATED	1	3	2	5
RSBN1L WILD-TYPE	45	54	64	66

'CUX1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S566. Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
CUX1 MUTATED	1	2	0	1
CUX1 WILD-TYPE	11	16	11	9

'CUX1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S567. Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
CUX1 MUTATED	2	0	0	1	1
CUX1 WILD-TYPE	10	10	7	6	14

'CUX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00661 (Fisher's exact test), Q value = 1

Table S568. Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
CUX1 MUTATED	20	1	0	2	0
CUX1 WILD-TYPE	136	22	54	5	2

Figure S130. Get High-res Image Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CUX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 1

Table S569. Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
CUX1 MUTATED	3	2	8
CUX1 WILD-TYPE	40	37	45

'CUX1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S570. Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
CUX1 MUTATED	4	4	4	1	5	1
CUX1 WILD-TYPE	35	32	33	9	35	23

'CUX1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S571. Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
CUX1 MUTATED	4	7	7	1
CUX1 WILD-TYPE	61	57	33	16

'CUX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 1

Table S572. Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
CUX1 MUTATED	7	11	5
CUX1 WILD-TYPE	72	74	76

'CUX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S573. Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
CUX1 MUTATED	3	14	6
CUX1 WILD-TYPE	56	93	73

'CUX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S574. Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
CUX1 MUTATED	8	6	7
CUX1 WILD-TYPE	70	65	84

'CUX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S575. Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
CUX1 MUTATED	3	5	4	9
CUX1 WILD-TYPE	43	52	62	62

'CUX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S576. Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
CUX1 MUTATED	5	3	3
CUX1 WILD-TYPE	50	32	23

'CUX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S577. Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
CUX1 MUTATED	5	3	3
CUX1 WILD-TYPE	38	43	24

'BCOR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S578. Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
BCOR MUTATED	1	2	0	0
BCOR WILD-TYPE	11	16	11	10

'BCOR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S579. Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
BCOR MUTATED	2	0	0	1	0
BCOR WILD-TYPE	10	10	7	6	15

'BCOR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00041 (Fisher's exact test), Q value = 0.86

Table S580. Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
BCOR MUTATED	25	1	0	3	0
BCOR WILD-TYPE	131	22	54	4	2

Figure S131. Get High-res Image Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BCOR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 1

Table S581. Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
BCOR MUTATED	1	3	11
BCOR WILD-TYPE	42	36	42

Figure S132. Get High-res Image Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'BCOR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 1

Table S582. Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
BCOR MUTATED	5	6	3	3	5	2
BCOR WILD-TYPE	34	30	34	7	35	22

'BCOR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.659 (Fisher's exact test), Q value = 1

Table S583. Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
BCOR MUTATED	9	6	7	2
BCOR WILD-TYPE	56	58	33	15

'BCOR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0317 (Fisher's exact test), Q value = 1

Table S584. Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
BCOR MUTATED	6	17	7
BCOR WILD-TYPE	73	68	74

Figure S133. Get High-res Image Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'BCOR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00504 (Fisher's exact test), Q value = 1

Table S585. Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
BCOR MUTATED	2	21	7
BCOR WILD-TYPE	57	86	72

Figure S134. Get High-res Image Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BCOR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S586. Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
BCOR MUTATED	11	9	9
BCOR WILD-TYPE	67	62	82

'BCOR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S587. Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
BCOR MUTATED	7	6	5	11
BCOR WILD-TYPE	39	51	61	60

'BCOR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S588. Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
BCOR MUTATED	7	3	3
BCOR WILD-TYPE	48	32	23

'BCOR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0272 (Fisher's exact test), Q value = 1

Table S589. Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
BCOR MUTATED	2	4	7
BCOR WILD-TYPE	41	42	20

Figure S135. Get High-res Image Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'WDR45 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S590. Gene #53: 'WDR45 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
WDR45 MUTATED	9	0	1	1	0
WDR45 WILD-TYPE	147	23	53	6	2

'WDR45 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S591. Gene #53: 'WDR45 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
WDR45 MUTATED	1	3	2
WDR45 WILD-TYPE	42	36	51

'WDR45 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0376 (Fisher's exact test), Q value = 1

Table S592. Gene #53: 'WDR45 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
WDR45 MUTATED	4	3	0	2	1	0
WDR45 WILD-TYPE	35	33	37	8	39	24

Figure S136. Get High-res Image Gene #53: 'WDR45 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'WDR45 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S593. Gene #53: 'WDR45 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
WDR45 MUTATED	3	5	2	0
WDR45 WILD-TYPE	62	59	38	17

'WDR45 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S594. Gene #53: 'WDR45 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
WDR45 MUTATED	4	3	4
WDR45 WILD-TYPE	75	82	77

'WDR45 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S595. Gene #53: 'WDR45 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
WDR45 MUTATED	1	6	4
WDR45 WILD-TYPE	58	101	75

'WDR45 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S596. Gene #53: 'WDR45 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
WDR45 MUTATED	6	1	4
WDR45 WILD-TYPE	72	70	87

'WDR45 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 1

Table S597. Gene #53: 'WDR45 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
WDR45 MUTATED	0	1	4	6
WDR45 WILD-TYPE	46	56	62	65

'WDR45 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S598. Gene #53: 'WDR45 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
WDR45 MUTATED	2	0	2
WDR45 WILD-TYPE	53	35	24

'WDR45 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S599. Gene #53: 'WDR45 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
WDR45 MUTATED	1	2	1
WDR45 WILD-TYPE	42	44	26

'CAB39L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S600. Gene #54: 'CAB39L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
CAB39L MUTATED	7	0	0	1	0
CAB39L WILD-TYPE	149	23	54	6	2

'CAB39L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0954 (Fisher's exact test), Q value = 1

Table S601. Gene #54: 'CAB39L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
CAB39L MUTATED	0	2	0	1	3	0
CAB39L WILD-TYPE	39	34	37	9	37	24

'CAB39L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S602. Gene #54: 'CAB39L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
CAB39L MUTATED	3	1	2	0
CAB39L WILD-TYPE	62	63	38	17

'CAB39L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S603. Gene #54: 'CAB39L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
CAB39L MUTATED	2	4	2
CAB39L WILD-TYPE	77	81	79

'CAB39L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0472 (Fisher's exact test), Q value = 1

Table S604. Gene #54: 'CAB39L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
CAB39L MUTATED	0	7	1
CAB39L WILD-TYPE	59	100	78

Figure S137. Get High-res Image Gene #54: 'CAB39L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CAB39L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S605. Gene #54: 'CAB39L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
CAB39L MUTATED	5	2	1
CAB39L WILD-TYPE	73	69	90

'CAB39L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 1

Table S606. Gene #54: 'CAB39L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
CAB39L MUTATED	3	2	0	3
CAB39L WILD-TYPE	43	55	66	68

'TAB3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 1

Table S607. Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
TAB3 MUTATED	3	1	0	0
TAB3 WILD-TYPE	9	17	11	10

'TAB3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0924 (Fisher's exact test), Q value = 1

Table S608. Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
TAB3 MUTATED	1	0	1	2	0
TAB3 WILD-TYPE	11	10	6	5	15

'TAB3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0204 (Fisher's exact test), Q value = 1

Table S609. Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
TAB3 MUTATED	17	0	0	1	0
TAB3 WILD-TYPE	139	23	54	6	2

Figure S138. Get High-res Image Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TAB3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S610. Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
TAB3 MUTATED	2	2	7
TAB3 WILD-TYPE	41	37	46

'TAB3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.692 (Fisher's exact test), Q value = 1

Table S611. Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
TAB3 MUTATED	4	2	3	1	1	1
TAB3 WILD-TYPE	35	34	34	9	39	23

'TAB3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S612. Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
TAB3 MUTATED	2	5	4	1
TAB3 WILD-TYPE	63	59	36	16

'TAB3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0598 (Fisher's exact test), Q value = 1

Table S613. Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
TAB3 MUTATED	4	11	3
TAB3 WILD-TYPE	75	74	78

'TAB3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0336 (Fisher's exact test), Q value = 1

Table S614. Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
TAB3 MUTATED	1	13	4
TAB3 WILD-TYPE	58	94	75

Figure S139. Get High-res Image Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TAB3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S615. Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
TAB3 MUTATED	7	3	8
TAB3 WILD-TYPE	71	68	83

'TAB3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S616. Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
TAB3 MUTATED	3	4	2	9
TAB3 WILD-TYPE	43	53	64	62

'TAB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S617. Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
TAB3 MUTATED	4	1	2
TAB3 WILD-TYPE	51	34	24

'TAB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S618. Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
TAB3 MUTATED	2	2	3
TAB3 WILD-TYPE	41	44	24

'OAZ3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0646 (Fisher's exact test), Q value = 1

Table S619. Gene #56: 'OAZ3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
OAZ3 MUTATED	5	0	1	2	0
OAZ3 WILD-TYPE	151	23	53	5	2

'OAZ3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S620. Gene #56: 'OAZ3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
OAZ3 MUTATED	2	0	2
OAZ3 WILD-TYPE	41	39	51

'OAZ3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 1

Table S621. Gene #56: 'OAZ3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
OAZ3 MUTATED	3	2	0	0	1	0
OAZ3 WILD-TYPE	36	34	37	10	39	24

'OAZ3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 1

Table S622. Gene #56: 'OAZ3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
OAZ3 MUTATED	2	4	0	0
OAZ3 WILD-TYPE	63	60	40	17

'OAZ3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0667 (Fisher's exact test), Q value = 1

Table S623. Gene #56: 'OAZ3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
OAZ3 MUTATED	5	3	0
OAZ3 WILD-TYPE	74	82	81

'OAZ3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0228 (Fisher's exact test), Q value = 1

Table S624. Gene #56: 'OAZ3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
OAZ3 MUTATED	1	7	0
OAZ3 WILD-TYPE	58	100	79

Figure S140. Get High-res Image Gene #56: 'OAZ3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OAZ3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S625. Gene #56: 'OAZ3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
OAZ3 MUTATED	5	2	1
OAZ3 WILD-TYPE	73	69	90

'OAZ3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S626. Gene #56: 'OAZ3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
OAZ3 MUTATED	1	2	0	5
OAZ3 WILD-TYPE	45	55	66	66

'AHCYL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S627. Gene #57: 'AHCYL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
AHCYL1 MUTATED	5	0	0	1	0
AHCYL1 WILD-TYPE	151	23	54	6	2

'AHCYL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S628. Gene #57: 'AHCYL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
AHCYL1 MUTATED	1	1	1
AHCYL1 WILD-TYPE	42	38	52

'AHCYL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S629. Gene #57: 'AHCYL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
AHCYL1 MUTATED	3	0	1	0	1	0
AHCYL1 WILD-TYPE	36	36	36	10	39	24

'AHCYL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S630. Gene #57: 'AHCYL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
AHCYL1 MUTATED	1	3	1	0
AHCYL1 WILD-TYPE	64	61	39	17

'AHCYL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S631. Gene #57: 'AHCYL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
AHCYL1 MUTATED	2	2	2
AHCYL1 WILD-TYPE	77	83	79

'AHCYL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S632. Gene #57: 'AHCYL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
AHCYL1 MUTATED	0	4	2
AHCYL1 WILD-TYPE	59	103	77

'AHCYL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S633. Gene #57: 'AHCYL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
AHCYL1 MUTATED	3	1	2
AHCYL1 WILD-TYPE	75	70	89

'AHCYL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S634. Gene #57: 'AHCYL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
AHCYL1 MUTATED	1	0	1	4
AHCYL1 WILD-TYPE	45	57	65	67

'ATM MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0113 (Fisher's exact test), Q value = 1

Table S635. Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
ATM MUTATED	6	2	1	0
ATM WILD-TYPE	6	16	10	10

Figure S141. Get High-res Image Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ATM MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00031 (Fisher's exact test), Q value = 0.65

Table S636. Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
ATM MUTATED	2	0	2	5	0
ATM WILD-TYPE	10	10	5	2	15

Figure S142. Get High-res Image Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ATM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00025 (Fisher's exact test), Q value = 0.53

Table S637. Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
ATM MUTATED	22	1	0	3	1
ATM WILD-TYPE	134	22	54	4	1

Figure S143. Get High-res Image Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S638. Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
ATM MUTATED	4	2	6
ATM WILD-TYPE	39	37	47

'ATM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 1

Table S639. Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
ATM MUTATED	6	5	5	3	5	0
ATM WILD-TYPE	33	31	32	7	35	24

'ATM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S640. Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
ATM MUTATED	8	9	7	0
ATM WILD-TYPE	57	55	33	17

'ATM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S641. Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
ATM MUTATED	11	9	8
ATM WILD-TYPE	68	76	73

'ATM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0816 (Fisher's exact test), Q value = 1

Table S642. Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
ATM MUTATED	4	18	6
ATM WILD-TYPE	55	89	73

'ATM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 1

Table S643. Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
ATM MUTATED	12	8	8
ATM WILD-TYPE	66	63	83

'ATM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0183 (Fisher's exact test), Q value = 1

Table S644. Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
ATM MUTATED	2	7	4	15
ATM WILD-TYPE	44	50	62	56

Figure S144. Get High-res Image Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ATM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S645. Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
ATM MUTATED	6	4	2
ATM WILD-TYPE	49	31	24

'ATM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S646. Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
ATM MUTATED	7	3	2
ATM WILD-TYPE	36	43	25

'MSH4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S647. Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
MSH4 MUTATED	2	1	1	0
MSH4 WILD-TYPE	10	17	10	10

'MSH4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0916 (Fisher's exact test), Q value = 1

Table S648. Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
MSH4 MUTATED	1	0	2	1	0
MSH4 WILD-TYPE	11	10	5	6	15

'MSH4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 1

Table S649. Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
MSH4 MUTATED	13	0	0	2	0
MSH4 WILD-TYPE	143	23	54	5	2

Figure S145. Get High-res Image Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MSH4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S650. Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
MSH4 MUTATED	2	1	3
MSH4 WILD-TYPE	41	38	50

'MSH4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 1

Table S651. Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
MSH4 MUTATED	4	3	1	2	2	1
MSH4 WILD-TYPE	35	33	36	8	38	23

'MSH4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S652. Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
MSH4 MUTATED	3	5	4	1
MSH4 WILD-TYPE	62	59	36	16

'MSH4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S653. Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
MSH4 MUTATED	5	6	4
MSH4 WILD-TYPE	74	79	77

'MSH4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S654. Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
MSH4 MUTATED	1	9	5
MSH4 WILD-TYPE	58	98	74

'MSH4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S655. Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
MSH4 MUTATED	7	3	4
MSH4 WILD-TYPE	71	68	87

'MSH4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S656. Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
MSH4 MUTATED	3	2	2	7
MSH4 WILD-TYPE	43	55	64	64

'MSH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S657. Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
MSH4 MUTATED	3	1	1
MSH4 WILD-TYPE	52	34	25

'MSH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 1

Table S658. Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
MSH4 MUTATED	2	1	2
MSH4 WILD-TYPE	41	45	25

'FAM65B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00239 (Fisher's exact test), Q value = 1

Table S659. Gene #60: 'FAM65B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
FAM65B MUTATED	13	0	0	3	0
FAM65B WILD-TYPE	143	23	54	4	2

Figure S146. Get High-res Image Gene #60: 'FAM65B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FAM65B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 1

Table S660. Gene #60: 'FAM65B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
FAM65B MUTATED	3	1	6
FAM65B WILD-TYPE	40	38	47

'FAM65B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S661. Gene #60: 'FAM65B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
FAM65B MUTATED	3	4	3	2	1	0
FAM65B WILD-TYPE	36	32	34	8	39	24

'FAM65B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S662. Gene #60: 'FAM65B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
FAM65B MUTATED	4	5	4	0
FAM65B WILD-TYPE	61	59	36	17

'FAM65B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.585 (Fisher's exact test), Q value = 1

Table S663. Gene #60: 'FAM65B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
FAM65B MUTATED	7	5	4
FAM65B WILD-TYPE	72	80	77

'FAM65B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S664. Gene #60: 'FAM65B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
FAM65B MUTATED	2	10	4
FAM65B WILD-TYPE	57	97	75

'FAM65B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S665. Gene #60: 'FAM65B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
FAM65B MUTATED	5	5	5
FAM65B WILD-TYPE	73	66	86

'FAM65B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0256 (Fisher's exact test), Q value = 1

Table S666. Gene #60: 'FAM65B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
FAM65B MUTATED	0	4	2	9
FAM65B WILD-TYPE	46	53	64	62

Figure S147. Get High-res Image Gene #60: 'FAM65B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FAM65B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S667. Gene #60: 'FAM65B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
FAM65B MUTATED	3	2	3
FAM65B WILD-TYPE	52	33	23

'FAM65B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S668. Gene #60: 'FAM65B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
FAM65B MUTATED	2	2	4
FAM65B WILD-TYPE	41	44	23

'FN1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S669. Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
FN1 MUTATED	3	3	0	0
FN1 WILD-TYPE	9	15	11	10

'FN1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0598 (Fisher's exact test), Q value = 1

Table S670. Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
FN1 MUTATED	3	0	1	2	0
FN1 WILD-TYPE	9	10	6	5	15

'FN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00523 (Fisher's exact test), Q value = 1

Table S671. Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
FN1 MUTATED	21	1	0	2	0
FN1 WILD-TYPE	135	22	54	5	2

Figure S148. Get High-res Image Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 1

Table S672. Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
FN1 MUTATED	3	2	7
FN1 WILD-TYPE	40	37	46

'FN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S673. Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
FN1 MUTATED	7	4	3	2	2	1
FN1 WILD-TYPE	32	32	34	8	38	23

'FN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S674. Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
FN1 MUTATED	6	8	4	1
FN1 WILD-TYPE	59	56	36	16

'FN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S675. Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
FN1 MUTATED	7	11	5
FN1 WILD-TYPE	72	74	76

'FN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0737 (Fisher's exact test), Q value = 1

Table S676. Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
FN1 MUTATED	2	15	6
FN1 WILD-TYPE	57	92	73

'FN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S677. Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
FN1 MUTATED	10	4	9
FN1 WILD-TYPE	68	67	82

'FN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0122 (Fisher's exact test), Q value = 1

Table S678. Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
FN1 MUTATED	2	4	3	14
FN1 WILD-TYPE	44	53	63	57

Figure S149. Get High-res Image Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S679. Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
FN1 MUTATED	6	2	3
FN1 WILD-TYPE	49	33	23

'FN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S680. Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
FN1 MUTATED	4	4	3
FN1 WILD-TYPE	39	42	24

'JAKMIP2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S681. Gene #62: 'JAKMIP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
JAKMIP2 MUTATED	2	1	0	0
JAKMIP2 WILD-TYPE	10	17	11	10

'JAKMIP2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S682. Gene #62: 'JAKMIP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
JAKMIP2 MUTATED	1	0	1	1	0
JAKMIP2 WILD-TYPE	11	10	6	6	15

'JAKMIP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0317 (Fisher's exact test), Q value = 1

Table S683. Gene #62: 'JAKMIP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
JAKMIP2 MUTATED	9	1	0	2	0
JAKMIP2 WILD-TYPE	147	22	54	5	2

Figure S150. Get High-res Image Gene #62: 'JAKMIP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'JAKMIP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S684. Gene #62: 'JAKMIP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
JAKMIP2 MUTATED	2	0	2
JAKMIP2 WILD-TYPE	41	39	51

'JAKMIP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0342 (Fisher's exact test), Q value = 1

Table S685. Gene #62: 'JAKMIP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
JAKMIP2 MUTATED	3	4	0	2	1	0
JAKMIP2 WILD-TYPE	36	32	37	8	39	24

Figure S151. Get High-res Image Gene #62: 'JAKMIP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'JAKMIP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S686. Gene #62: 'JAKMIP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
JAKMIP2 MUTATED	3	5	2	0
JAKMIP2 WILD-TYPE	62	59	38	17

'JAKMIP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0736 (Fisher's exact test), Q value = 1

Table S687. Gene #62: 'JAKMIP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
JAKMIP2 MUTATED	7	4	1
JAKMIP2 WILD-TYPE	72	81	80

'JAKMIP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0637 (Fisher's exact test), Q value = 1

Table S688. Gene #62: 'JAKMIP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
JAKMIP2 MUTATED	2	9	1
JAKMIP2 WILD-TYPE	57	98	78

'JAKMIP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0866 (Fisher's exact test), Q value = 1

Table S689. Gene #62: 'JAKMIP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
JAKMIP2 MUTATED	6	4	1
JAKMIP2 WILD-TYPE	72	67	90

'JAKMIP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S690. Gene #62: 'JAKMIP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
JAKMIP2 MUTATED	1	3	1	6
JAKMIP2 WILD-TYPE	45	54	65	65

'WBP4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S691. Gene #63: 'WBP4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
WBP4 MUTATED	7	0	0	1	0
WBP4 WILD-TYPE	149	23	54	6	2

'WBP4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S692. Gene #63: 'WBP4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
WBP4 MUTATED	1	0	5
WBP4 WILD-TYPE	42	39	48

'WBP4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 1

Table S693. Gene #63: 'WBP4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
WBP4 MUTATED	1	4	2	0	0	1
WBP4 WILD-TYPE	38	32	35	10	40	23

'WBP4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S694. Gene #63: 'WBP4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
WBP4 MUTATED	3	2	2	1
WBP4 WILD-TYPE	62	62	38	16

'WBP4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S695. Gene #63: 'WBP4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
WBP4 MUTATED	4	3	1
WBP4 WILD-TYPE	75	82	80

'WBP4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S696. Gene #63: 'WBP4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
WBP4 MUTATED	0	6	2
WBP4 WILD-TYPE	59	101	77

'WBP4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.068 (Fisher's exact test), Q value = 1

Table S697. Gene #63: 'WBP4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
WBP4 MUTATED	5	0	2
WBP4 WILD-TYPE	73	71	89

'WBP4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0868 (Fisher's exact test), Q value = 1

Table S698. Gene #63: 'WBP4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
WBP4 MUTATED	1	1	0	5
WBP4 WILD-TYPE	45	56	66	66

'WBP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S699. Gene #63: 'WBP4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
WBP4 MUTATED	2	0	2
WBP4 WILD-TYPE	53	35	24

'WBP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S700. Gene #63: 'WBP4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
WBP4 MUTATED	2	0	2
WBP4 WILD-TYPE	41	46	25

'RASA1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S701. Gene #64: 'RASA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
RASA1 MUTATED	3	2	1	0
RASA1 WILD-TYPE	9	16	10	10

'RASA1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S702. Gene #64: 'RASA1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
RASA1 MUTATED	2	0	1	2	1
RASA1 WILD-TYPE	10	10	6	5	14

'RASA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S703. Gene #64: 'RASA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
RASA1 MUTATED	20	1	1	0	0
RASA1 WILD-TYPE	136	22	53	7	2

'RASA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S704. Gene #64: 'RASA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
RASA1 MUTATED	3	1	5
RASA1 WILD-TYPE	40	38	48

'RASA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S705. Gene #64: 'RASA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
RASA1 MUTATED	4	3	3	3	4	1
RASA1 WILD-TYPE	35	33	34	7	36	23

'RASA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S706. Gene #64: 'RASA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
RASA1 MUTATED	5	7	5	1
RASA1 WILD-TYPE	60	57	35	16

'RASA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S707. Gene #64: 'RASA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
RASA1 MUTATED	7	8	6
RASA1 WILD-TYPE	72	77	75

'RASA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S708. Gene #64: 'RASA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
RASA1 MUTATED	4	11	6
RASA1 WILD-TYPE	55	96	73

'RASA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S709. Gene #64: 'RASA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
RASA1 MUTATED	9	5	7
RASA1 WILD-TYPE	69	66	84

'RASA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S710. Gene #64: 'RASA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
RASA1 MUTATED	2	7	5	7
RASA1 WILD-TYPE	44	50	61	64

'RASA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S711. Gene #64: 'RASA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
RASA1 MUTATED	4	3	1
RASA1 WILD-TYPE	51	32	25

'RASA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 1

Table S712. Gene #64: 'RASA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
RASA1 MUTATED	3	2	3
RASA1 WILD-TYPE	40	44	24

'ALPK2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0313 (Fisher's exact test), Q value = 1

Table S713. Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
ALPK2 MUTATED	4	1	0	0
ALPK2 WILD-TYPE	8	17	11	10

Figure S152. Get High-res Image Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ALPK2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0147 (Fisher's exact test), Q value = 1

Table S714. Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
ALPK2 MUTATED	1	0	1	3	0
ALPK2 WILD-TYPE	11	10	6	4	15

Figure S153. Get High-res Image Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ALPK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0159 (Fisher's exact test), Q value = 1

Table S715. Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
ALPK2 MUTATED	18	0	0	1	0
ALPK2 WILD-TYPE	138	23	54	6	2

Figure S154. Get High-res Image Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ALPK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S716. Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
ALPK2 MUTATED	3	1	5
ALPK2 WILD-TYPE	40	38	48

'ALPK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S717. Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
ALPK2 MUTATED	4	3	3	2	4	1
ALPK2 WILD-TYPE	35	33	34	8	36	23

'ALPK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S718. Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
ALPK2 MUTATED	4	6	6	1
ALPK2 WILD-TYPE	61	58	34	16

'ALPK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S719. Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
ALPK2 MUTATED	5	10	4
ALPK2 WILD-TYPE	74	75	77

'ALPK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 1

Table S720. Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
ALPK2 MUTATED	3	11	5
ALPK2 WILD-TYPE	56	96	74

'ALPK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 1

Table S721. Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
ALPK2 MUTATED	9	4	6
ALPK2 WILD-TYPE	69	67	85

'ALPK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S722. Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
ALPK2 MUTATED	5	5	3	6
ALPK2 WILD-TYPE	41	52	63	65

'ALPK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 1

Table S723. Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
ALPK2 MUTATED	6	2	1
ALPK2 WILD-TYPE	49	33	25

'ALPK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S724. Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
ALPK2 MUTATED	5	2	2
ALPK2 WILD-TYPE	38	44	25

'POLE MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S725. Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
POLE MUTATED	2	3	1	0
POLE WILD-TYPE	10	15	10	10

'POLE MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0607 (Fisher's exact test), Q value = 1

Table S726. Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
POLE MUTATED	3	0	2	1	0
POLE WILD-TYPE	9	10	5	6	15

'POLE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00644 (Fisher's exact test), Q value = 1

Table S727. Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
POLE MUTATED	23	0	1	2	0
POLE WILD-TYPE	133	23	53	5	2

Figure S155. Get High-res Image Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'POLE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S728. Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
POLE MUTATED	2	6	6
POLE WILD-TYPE	41	33	47

'POLE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S729. Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
POLE MUTATED	6	6	5	2	2	1
POLE WILD-TYPE	33	30	32	8	38	23

'POLE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S730. Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
POLE MUTATED	9	8	4	1
POLE WILD-TYPE	56	56	36	16

'POLE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.935 (Fisher's exact test), Q value = 1

Table S731. Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
POLE MUTATED	9	10	8
POLE WILD-TYPE	70	75	73

'POLE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S732. Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
POLE MUTATED	3	15	9
POLE WILD-TYPE	56	92	70

'POLE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S733. Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
POLE MUTATED	10	7	9
POLE WILD-TYPE	68	64	82

'POLE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S734. Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
POLE MUTATED	3	6	4	13
POLE WILD-TYPE	43	51	62	58

'POLE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S735. Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
POLE MUTATED	6	3	2
POLE WILD-TYPE	49	32	24

'POLE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S736. Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
POLE MUTATED	4	3	4
POLE WILD-TYPE	39	43	23

'KIF20B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S737. Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
KIF20B MUTATED	3	1	1	0
KIF20B WILD-TYPE	9	17	10	10

'KIF20B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0457 (Fisher's exact test), Q value = 1

Table S738. Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
KIF20B MUTATED	1	0	2	2	0
KIF20B WILD-TYPE	11	10	5	5	15

Figure S156. Get High-res Image Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'KIF20B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00378 (Fisher's exact test), Q value = 1

Table S739. Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
KIF20B MUTATED	19	0	0	2	0
KIF20B WILD-TYPE	137	23	54	5	2

Figure S157. Get High-res Image Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIF20B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S740. Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
KIF20B MUTATED	3	3	6
KIF20B WILD-TYPE	40	36	47

'KIF20B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S741. Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
KIF20B MUTATED	5	5	4	1	1	2
KIF20B WILD-TYPE	34	31	33	9	39	22

'KIF20B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S742. Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
KIF20B MUTATED	6	6	4	2
KIF20B WILD-TYPE	59	58	36	15

'KIF20B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 1

Table S743. Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
KIF20B MUTATED	7	9	5
KIF20B WILD-TYPE	72	76	76

'KIF20B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0324 (Fisher's exact test), Q value = 1

Table S744. Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
KIF20B MUTATED	1	14	6
KIF20B WILD-TYPE	58	93	73

Figure S158. Get High-res Image Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIF20B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 1

Table S745. Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
KIF20B MUTATED	9	5	6
KIF20B WILD-TYPE	69	66	85

'KIF20B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 1

Table S746. Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
KIF20B MUTATED	3	5	2	10
KIF20B WILD-TYPE	43	52	64	61

'KIF20B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S747. Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
KIF20B MUTATED	5	2	2
KIF20B WILD-TYPE	50	33	24

'KIF20B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S748. Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
KIF20B MUTATED	4	1	4
KIF20B WILD-TYPE	39	45	23

'C14ORF166B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0285 (Fisher's exact test), Q value = 1

Table S749. Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
C14ORF166B MUTATED	8	0	0	2	0
C14ORF166B WILD-TYPE	148	23	54	5	2

Figure S159. Get High-res Image Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C14ORF166B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0126 (Fisher's exact test), Q value = 1

Table S750. Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
C14ORF166B MUTATED	0	0	5
C14ORF166B WILD-TYPE	43	39	48

Figure S160. Get High-res Image Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'C14ORF166B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 1

Table S751. Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
C14ORF166B MUTATED	0	3	2	2	0	1
C14ORF166B WILD-TYPE	39	33	35	8	40	23

Figure S161. Get High-res Image Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'C14ORF166B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 1

Table S752. Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
C14ORF166B MUTATED	2	2	3	1
C14ORF166B WILD-TYPE	63	62	37	16

'C14ORF166B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S753. Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
C14ORF166B MUTATED	3	4	3
C14ORF166B WILD-TYPE	76	81	78

'C14ORF166B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 1

Table S754. Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
C14ORF166B MUTATED	0	6	4
C14ORF166B WILD-TYPE	59	101	75

'C14ORF166B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 1

Table S755. Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
C14ORF166B MUTATED	2	2	5
C14ORF166B WILD-TYPE	76	69	86

'C14ORF166B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S756. Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
C14ORF166B MUTATED	1	1	2	5
C14ORF166B WILD-TYPE	45	56	64	66

'C14ORF166B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 1

Table S757. Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
C14ORF166B MUTATED	4	0	0
C14ORF166B WILD-TYPE	51	35	26

'C14ORF166B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S758. Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
C14ORF166B MUTATED	2	1	1
C14ORF166B WILD-TYPE	41	45	26

'SLC26A8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0261 (Fisher's exact test), Q value = 1

Table S759. Gene #69: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
SLC26A8 MUTATED	10	0	0	2	0
SLC26A8 WILD-TYPE	146	23	54	5	2

Figure S162. Get High-res Image Gene #69: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC26A8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S760. Gene #69: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
SLC26A8 MUTATED	2	1	4
SLC26A8 WILD-TYPE	41	38	49

'SLC26A8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S761. Gene #69: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
SLC26A8 MUTATED	4	4	2	1	0	0
SLC26A8 WILD-TYPE	35	32	35	9	40	24

'SLC26A8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S762. Gene #69: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
SLC26A8 MUTATED	4	4	3	0
SLC26A8 WILD-TYPE	61	60	37	17

'SLC26A8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S763. Gene #69: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
SLC26A8 MUTATED	6	4	2
SLC26A8 WILD-TYPE	73	81	79

'SLC26A8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S764. Gene #69: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
SLC26A8 MUTATED	1	9	2
SLC26A8 WILD-TYPE	58	98	77

'SLC26A8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 1

Table S765. Gene #69: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
SLC26A8 MUTATED	6	4	2
SLC26A8 WILD-TYPE	72	67	89

'SLC26A8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S766. Gene #69: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
SLC26A8 MUTATED	1	4	1	6
SLC26A8 WILD-TYPE	45	53	65	65

'SLC26A8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S767. Gene #69: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
SLC26A8 MUTATED	2	2	1
SLC26A8 WILD-TYPE	53	33	25

'SLC26A8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S768. Gene #69: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
SLC26A8 MUTATED	1	1	3
SLC26A8 WILD-TYPE	42	45	24

'ZNF334 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S769. Gene #70: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
ZNF334 MUTATED	1	1	1	0
ZNF334 WILD-TYPE	11	17	10	10

'ZNF334 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0782 (Fisher's exact test), Q value = 1

Table S770. Gene #70: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
ZNF334 MUTATED	1	0	2	0	0
ZNF334 WILD-TYPE	11	10	5	7	15

'ZNF334 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0559 (Fisher's exact test), Q value = 1

Table S771. Gene #70: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
ZNF334 MUTATED	13	0	1	2	0
ZNF334 WILD-TYPE	143	23	53	5	2

'ZNF334 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S772. Gene #70: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
ZNF334 MUTATED	4	1	6
ZNF334 WILD-TYPE	39	38	47

'ZNF334 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S773. Gene #70: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
ZNF334 MUTATED	6	4	2	0	1	2
ZNF334 WILD-TYPE	33	32	35	10	39	22

'ZNF334 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S774. Gene #70: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
ZNF334 MUTATED	6	6	1	2
ZNF334 WILD-TYPE	59	58	39	15

'ZNF334 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S775. Gene #70: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
ZNF334 MUTATED	8	4	5
ZNF334 WILD-TYPE	71	81	76

'ZNF334 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S776. Gene #70: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
ZNF334 MUTATED	3	8	6
ZNF334 WILD-TYPE	56	99	73

'ZNF334 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S777. Gene #70: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
ZNF334 MUTATED	6	4	6
ZNF334 WILD-TYPE	72	67	85

'ZNF334 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S778. Gene #70: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
ZNF334 MUTATED	2	4	3	7
ZNF334 WILD-TYPE	44	53	63	64

'ZNF334 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S779. Gene #70: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
ZNF334 MUTATED	5	3	1
ZNF334 WILD-TYPE	50	32	25

'ZNF334 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 1

Table S780. Gene #70: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
ZNF334 MUTATED	4	2	3
ZNF334 WILD-TYPE	39	44	24

'RRAS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 1

Table S781. Gene #71: 'RRAS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
RRAS2 MUTATED	2	0	0	2	0
RRAS2 WILD-TYPE	154	23	54	5	2

Figure S163. Get High-res Image Gene #71: 'RRAS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RRAS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S782. Gene #71: 'RRAS2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
RRAS2 MUTATED	1	0	1	1	0	1
RRAS2 WILD-TYPE	38	36	36	9	40	23

'RRAS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S783. Gene #71: 'RRAS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
RRAS2 MUTATED	0	2	2	0
RRAS2 WILD-TYPE	65	62	38	17

'RRAS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S784. Gene #71: 'RRAS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
RRAS2 MUTATED	1	0	3
RRAS2 WILD-TYPE	78	85	78

'RRAS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S785. Gene #71: 'RRAS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
RRAS2 MUTATED	1	1	2
RRAS2 WILD-TYPE	58	106	77

'RRAS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S786. Gene #71: 'RRAS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
RRAS2 MUTATED	0	2	2
RRAS2 WILD-TYPE	78	69	89

'RRAS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S787. Gene #71: 'RRAS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
RRAS2 MUTATED	0	1	1	2
RRAS2 WILD-TYPE	46	56	65	69

'PPM1N MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S788. Gene #72: 'PPM1N MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
PPM1N MUTATED	2	1	0	0
PPM1N WILD-TYPE	10	17	11	10

'PPM1N MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S789. Gene #72: 'PPM1N MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
PPM1N MUTATED	1	0	1	1	0
PPM1N WILD-TYPE	11	10	6	6	15

'PPM1N MUTATION STATUS' versus 'CN_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S790. Gene #72: 'PPM1N MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
PPM1N MUTATED	7	0	0	0	0
PPM1N WILD-TYPE	149	23	54	7	2

'PPM1N MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S791. Gene #72: 'PPM1N MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
PPM1N MUTATED	1	1	1
PPM1N WILD-TYPE	42	38	52

'PPM1N MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 1

Table S792. Gene #72: 'PPM1N MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
PPM1N MUTATED	2	0	1	1	2	1
PPM1N WILD-TYPE	37	36	36	9	38	23

'PPM1N MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S793. Gene #72: 'PPM1N MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
PPM1N MUTATED	1	3	2	1
PPM1N WILD-TYPE	64	61	38	16

'PPM1N MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0632 (Fisher's exact test), Q value = 1

Table S794. Gene #72: 'PPM1N MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
PPM1N MUTATED	2	5	0
PPM1N WILD-TYPE	77	80	81

'PPM1N MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S795. Gene #72: 'PPM1N MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
PPM1N MUTATED	1	5	1
PPM1N WILD-TYPE	58	102	78

'PPM1N MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S796. Gene #72: 'PPM1N MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
PPM1N MUTATED	4	2	1
PPM1N WILD-TYPE	74	69	90

'PPM1N MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S797. Gene #72: 'PPM1N MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
PPM1N MUTATED	2	3	0	2
PPM1N WILD-TYPE	44	54	66	69

'PPM1N MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S798. Gene #72: 'PPM1N MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
PPM1N MUTATED	1	1	1
PPM1N WILD-TYPE	54	34	25

'PPM1N MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S799. Gene #72: 'PPM1N MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
PPM1N MUTATED	2	0	1
PPM1N WILD-TYPE	41	46	26

'FCN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S800. Gene #73: 'FCN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
FCN1 MUTATED	7	0	0	1	0
FCN1 WILD-TYPE	149	23	54	6	2

'FCN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S801. Gene #73: 'FCN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
FCN1 MUTATED	2	0	3
FCN1 WILD-TYPE	41	39	50

'FCN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S802. Gene #73: 'FCN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
FCN1 MUTATED	2	1	1	1	0	1
FCN1 WILD-TYPE	37	35	36	9	40	23

'FCN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 1

Table S803. Gene #73: 'FCN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
FCN1 MUTATED	1	3	1	1
FCN1 WILD-TYPE	64	61	39	16

'FCN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S804. Gene #73: 'FCN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
FCN1 MUTATED	4	3	1
FCN1 WILD-TYPE	75	82	80

'FCN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S805. Gene #73: 'FCN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
FCN1 MUTATED	1	5	2
FCN1 WILD-TYPE	58	102	77

'FCN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S806. Gene #73: 'FCN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
FCN1 MUTATED	3	2	3
FCN1 WILD-TYPE	75	69	88

'FCN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S807. Gene #73: 'FCN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
FCN1 MUTATED	2	2	1	3
FCN1 WILD-TYPE	44	55	65	68

'FCN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S808. Gene #73: 'FCN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
FCN1 MUTATED	2	1	1
FCN1 WILD-TYPE	53	34	25

'FCN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0381 (Fisher's exact test), Q value = 1

Table S809. Gene #73: 'FCN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
FCN1 MUTATED	1	0	3
FCN1 WILD-TYPE	42	46	24

Figure S164. Get High-res Image Gene #73: 'FCN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TIAL1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S810. Gene #74: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
TIAL1 MUTATED	2	1	0	0
TIAL1 WILD-TYPE	10	17	11	10

'TIAL1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0789 (Fisher's exact test), Q value = 1

Table S811. Gene #74: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
TIAL1 MUTATED	1	0	0	2	0
TIAL1 WILD-TYPE	11	10	7	5	15

'TIAL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S812. Gene #74: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
TIAL1 MUTATED	9	0	0	1	0
TIAL1 WILD-TYPE	147	23	54	6	2

'TIAL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S813. Gene #74: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
TIAL1 MUTATED	1	0	5
TIAL1 WILD-TYPE	42	39	48

'TIAL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S814. Gene #74: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
TIAL1 MUTATED	1	1	4	1	1	1
TIAL1 WILD-TYPE	38	35	33	9	39	23

'TIAL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0508 (Fisher's exact test), Q value = 1

Table S815. Gene #74: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
TIAL1 MUTATED	0	4	4	1
TIAL1 WILD-TYPE	65	60	36	16

'TIAL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0776 (Fisher's exact test), Q value = 1

Table S816. Gene #74: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
TIAL1 MUTATED	2	7	1
TIAL1 WILD-TYPE	77	78	80

'TIAL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S817. Gene #74: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
TIAL1 MUTATED	1	7	2
TIAL1 WILD-TYPE	58	100	77

'TIAL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.722 (Fisher's exact test), Q value = 1

Table S818. Gene #74: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
TIAL1 MUTATED	3	2	5
TIAL1 WILD-TYPE	75	69	86

'TIAL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 1

Table S819. Gene #74: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
TIAL1 MUTATED	1	3	1	5
TIAL1 WILD-TYPE	45	54	65	66

'TIAL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S820. Gene #74: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
TIAL1 MUTATED	5	1	0
TIAL1 WILD-TYPE	50	34	26

'TIAL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0516 (Fisher's exact test), Q value = 1

Table S821. Gene #74: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
TIAL1 MUTATED	3	0	3
TIAL1 WILD-TYPE	40	46	24

'PSMC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 1

Table S822. Gene #75: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
PSMC4 MUTATED	9	0	0	1	0
PSMC4 WILD-TYPE	147	23	54	6	2

'PSMC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S823. Gene #75: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
PSMC4 MUTATED	2	0	3
PSMC4 WILD-TYPE	41	39	50

'PSMC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 1

Table S824. Gene #75: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
PSMC4 MUTATED	3	3	0	1	0	1
PSMC4 WILD-TYPE	36	33	37	9	40	23

'PSMC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S825. Gene #75: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
PSMC4 MUTATED	4	2	1	1
PSMC4 WILD-TYPE	61	62	39	16

'PSMC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 1

Table S826. Gene #75: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
PSMC4 MUTATED	6	2	3
PSMC4 WILD-TYPE	73	83	78

'PSMC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S827. Gene #75: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
PSMC4 MUTATED	1	7	3
PSMC4 WILD-TYPE	58	100	76

'PSMC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S828. Gene #75: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
PSMC4 MUTATED	3	4	3
PSMC4 WILD-TYPE	75	67	88

'PSMC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0936 (Fisher's exact test), Q value = 1

Table S829. Gene #75: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
PSMC4 MUTATED	0	3	1	6
PSMC4 WILD-TYPE	46	54	65	65

'PSMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S830. Gene #75: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
PSMC4 MUTATED	1	2	1
PSMC4 WILD-TYPE	54	33	25

'PSMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0545 (Fisher's exact test), Q value = 1

Table S831. Gene #75: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
PSMC4 MUTATED	0	1	3
PSMC4 WILD-TYPE	43	45	24

'MFAP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S832. Gene #76: 'MFAP5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
MFAP5 MUTATED	8	0	0	1	0
MFAP5 WILD-TYPE	148	23	54	6	2

'MFAP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S833. Gene #76: 'MFAP5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
MFAP5 MUTATED	3	1	1
MFAP5 WILD-TYPE	40	38	52

'MFAP5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0042 (Fisher's exact test), Q value = 1

Table S834. Gene #76: 'MFAP5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
MFAP5 MUTATED	5	2	0	2	0	0
MFAP5 WILD-TYPE	34	34	37	8	40	24

Figure S165. Get High-res Image Gene #76: 'MFAP5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MFAP5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S835. Gene #76: 'MFAP5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
MFAP5 MUTATED	4	3	2	0
MFAP5 WILD-TYPE	61	61	38	17

'MFAP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S836. Gene #76: 'MFAP5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
MFAP5 MUTATED	4	3	2
MFAP5 WILD-TYPE	75	82	79

'MFAP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S837. Gene #76: 'MFAP5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
MFAP5 MUTATED	3	5	1
MFAP5 WILD-TYPE	56	102	78

'MFAP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S838. Gene #76: 'MFAP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
MFAP5 MUTATED	4	4	1
MFAP5 WILD-TYPE	74	67	90

'MFAP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 1

Table S839. Gene #76: 'MFAP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
MFAP5 MUTATED	1	5	1	2
MFAP5 WILD-TYPE	45	52	65	69

'MFAP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 1

Table S840. Gene #76: 'MFAP5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
MFAP5 MUTATED	0	2	1
MFAP5 WILD-TYPE	55	33	25

'MFAP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S841. Gene #76: 'MFAP5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
MFAP5 MUTATED	1	0	2
MFAP5 WILD-TYPE	42	46	25

'RAB3GAP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S842. Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
RAB3GAP1 MUTATED	1	1	1	0
RAB3GAP1 WILD-TYPE	11	17	10	10

'RAB3GAP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0768 (Fisher's exact test), Q value = 1

Table S843. Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
RAB3GAP1 MUTATED	1	0	2	0	0
RAB3GAP1 WILD-TYPE	11	10	5	7	15

'RAB3GAP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0271 (Fisher's exact test), Q value = 1

Table S844. Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
RAB3GAP1 MUTATED	12	2	0	2	0
RAB3GAP1 WILD-TYPE	144	21	54	5	2

Figure S166. Get High-res Image Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RAB3GAP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S845. Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
RAB3GAP1 MUTATED	1	2	5
RAB3GAP1 WILD-TYPE	42	37	48

'RAB3GAP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 1

Table S846. Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
RAB3GAP1 MUTATED	4	5	3	0	0	2
RAB3GAP1 WILD-TYPE	35	31	34	10	40	22

'RAB3GAP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S847. Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
RAB3GAP1 MUTATED	5	5	2	2
RAB3GAP1 WILD-TYPE	60	59	38	15

'RAB3GAP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S848. Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
RAB3GAP1 MUTATED	6	5	4
RAB3GAP1 WILD-TYPE	73	80	77

'RAB3GAP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S849. Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
RAB3GAP1 MUTATED	3	8	4
RAB3GAP1 WILD-TYPE	56	99	75

'RAB3GAP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S850. Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
RAB3GAP1 MUTATED	4	6	5
RAB3GAP1 WILD-TYPE	74	65	86

'RAB3GAP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 1

Table S851. Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
RAB3GAP1 MUTATED	2	2	3	8
RAB3GAP1 WILD-TYPE	44	55	63	63

'RAB3GAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S852. Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
RAB3GAP1 MUTATED	3	2	1
RAB3GAP1 WILD-TYPE	52	33	25

'RAB3GAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0791 (Fisher's exact test), Q value = 1

Table S853. Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
RAB3GAP1 MUTATED	4	0	2
RAB3GAP1 WILD-TYPE	39	46	25

'MSH6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S854. Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
MSH6 MUTATED	2	1	0	0
MSH6 WILD-TYPE	10	17	11	10

'MSH6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S855. Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
MSH6 MUTATED	1	0	1	1	0
MSH6 WILD-TYPE	11	10	6	6	15

'MSH6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00092 (Fisher's exact test), Q value = 1

Table S856. Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
MSH6 MUTATED	12	0	1	4	0
MSH6 WILD-TYPE	144	23	53	3	2

Figure S167. Get High-res Image Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MSH6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S857. Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
MSH6 MUTATED	2	1	4
MSH6 WILD-TYPE	41	38	49

'MSH6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S858. Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
MSH6 MUTATED	4	5	1	2	1	2
MSH6 WILD-TYPE	35	31	36	8	39	22

'MSH6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.978 (Fisher's exact test), Q value = 1

Table S859. Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
MSH6 MUTATED	5	6	3	1
MSH6 WILD-TYPE	60	58	37	16

'MSH6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S860. Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
MSH6 MUTATED	7	7	3
MSH6 WILD-TYPE	72	78	78

'MSH6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S861. Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
MSH6 MUTATED	3	11	3
MSH6 WILD-TYPE	56	96	76

'MSH6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S862. Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
MSH6 MUTATED	7	5	4
MSH6 WILD-TYPE	71	66	87

'MSH6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0918 (Fisher's exact test), Q value = 1

Table S863. Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
MSH6 MUTATED	2	5	1	8
MSH6 WILD-TYPE	44	52	65	63

'MSH6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S864. Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
MSH6 MUTATED	3	1	1
MSH6 WILD-TYPE	52	34	25

'MSH6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S865. Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
MSH6 MUTATED	2	1	2
MSH6 WILD-TYPE	41	45	25

'BMP2K MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 1

Table S866. Gene #79: 'BMP2K MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
BMP2K MUTATED	3	1	0	0
BMP2K WILD-TYPE	9	17	11	10

'BMP2K MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0921 (Fisher's exact test), Q value = 1

Table S867. Gene #79: 'BMP2K MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
BMP2K MUTATED	1	0	1	2	0
BMP2K WILD-TYPE	11	10	6	5	15

'BMP2K MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0647 (Fisher's exact test), Q value = 1

Table S868. Gene #79: 'BMP2K MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
BMP2K MUTATED	12	0	0	1	0
BMP2K WILD-TYPE	144	23	54	6	2

'BMP2K MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S869. Gene #79: 'BMP2K MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
BMP2K MUTATED	1	1	5
BMP2K WILD-TYPE	42	38	48

'BMP2K MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S870. Gene #79: 'BMP2K MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
BMP2K MUTATED	4	2	2	0	2	1
BMP2K WILD-TYPE	35	34	35	10	38	23

'BMP2K MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S871. Gene #79: 'BMP2K MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
BMP2K MUTATED	4	4	2	1
BMP2K WILD-TYPE	61	60	38	16

'BMP2K MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S872. Gene #79: 'BMP2K MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
BMP2K MUTATED	2	6	4
BMP2K WILD-TYPE	77	79	77

'BMP2K MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 1

Table S873. Gene #79: 'BMP2K MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
BMP2K MUTATED	1	7	4
BMP2K WILD-TYPE	58	100	75

'BMP2K MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 1

Table S874. Gene #79: 'BMP2K MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
BMP2K MUTATED	6	1	6
BMP2K WILD-TYPE	72	70	85

'BMP2K MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S875. Gene #79: 'BMP2K MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
BMP2K MUTATED	2	2	3	6
BMP2K WILD-TYPE	44	55	63	65

'BMP2K MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 1

Table S876. Gene #79: 'BMP2K MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
BMP2K MUTATED	6	1	0
BMP2K WILD-TYPE	49	34	26

'BMP2K MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S877. Gene #79: 'BMP2K MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
BMP2K MUTATED	2	4	1
BMP2K WILD-TYPE	41	42	26

'ZNF606 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S878. Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
ZNF606 MUTATED	3	1	0	0
ZNF606 WILD-TYPE	9	17	11	10

'ZNF606 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.092 (Fisher's exact test), Q value = 1

Table S879. Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
ZNF606 MUTATED	1	0	1	2	0
ZNF606 WILD-TYPE	11	10	6	5	15

'ZNF606 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 1

Table S880. Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
ZNF606 MUTATED	14	0	0	2	0
ZNF606 WILD-TYPE	142	23	54	5	2

Figure S168. Get High-res Image Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF606 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S881. Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
ZNF606 MUTATED	1	1	6
ZNF606 WILD-TYPE	42	38	47

'ZNF606 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S882. Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
ZNF606 MUTATED	3	5	3	0	2	1
ZNF606 WILD-TYPE	36	31	34	10	38	23

'ZNF606 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S883. Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
ZNF606 MUTATED	6	5	2	1
ZNF606 WILD-TYPE	59	59	38	16

'ZNF606 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S884. Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
ZNF606 MUTATED	6	6	4
ZNF606 WILD-TYPE	73	79	77

'ZNF606 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S885. Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
ZNF606 MUTATED	3	9	4
ZNF606 WILD-TYPE	56	98	75

'ZNF606 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S886. Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
ZNF606 MUTATED	5	5	5
ZNF606 WILD-TYPE	73	66	86

'ZNF606 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S887. Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
ZNF606 MUTATED	2	3	3	7
ZNF606 WILD-TYPE	44	54	63	64

'ZNF606 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S888. Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
ZNF606 MUTATED	4	2	0
ZNF606 WILD-TYPE	51	33	26

'ZNF606 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 1

Table S889. Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
ZNF606 MUTATED	3	1	2
ZNF606 WILD-TYPE	40	45	25

'ZNF263 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S890. Gene #81: 'ZNF263 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
ZNF263 MUTATED	7	0	0	0	0
ZNF263 WILD-TYPE	149	23	54	7	2

'ZNF263 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S891. Gene #81: 'ZNF263 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
ZNF263 MUTATED	1	0	3
ZNF263 WILD-TYPE	42	39	50

'ZNF263 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S892. Gene #81: 'ZNF263 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
ZNF263 MUTATED	3	1	2	0	1	0
ZNF263 WILD-TYPE	36	35	35	10	39	24

'ZNF263 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S893. Gene #81: 'ZNF263 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
ZNF263 MUTATED	2	3	2	0
ZNF263 WILD-TYPE	63	61	38	17

'ZNF263 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S894. Gene #81: 'ZNF263 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
ZNF263 MUTATED	1	4	2
ZNF263 WILD-TYPE	78	81	79

'ZNF263 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S895. Gene #81: 'ZNF263 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
ZNF263 MUTATED	0	4	3
ZNF263 WILD-TYPE	59	103	76

'ZNF263 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S896. Gene #81: 'ZNF263 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
ZNF263 MUTATED	3	0	4
ZNF263 WILD-TYPE	75	71	87

'ZNF263 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S897. Gene #81: 'ZNF263 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
ZNF263 MUTATED	1	0	1	5
ZNF263 WILD-TYPE	45	57	65	66

'ZNF263 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S898. Gene #81: 'ZNF263 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
ZNF263 MUTATED	3	0	1
ZNF263 WILD-TYPE	52	35	25

'ZNF263 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 1

Table S899. Gene #81: 'ZNF263 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
ZNF263 MUTATED	3	0	1
ZNF263 WILD-TYPE	40	46	26

'CHEK2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S900. Gene #82: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
CHEK2 MUTATED	1	2	0	0
CHEK2 WILD-TYPE	11	16	11	10

'CHEK2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S901. Gene #82: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
CHEK2 MUTATED	2	0	1	0	0
CHEK2 WILD-TYPE	10	10	6	7	15

'CHEK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0704 (Fisher's exact test), Q value = 1

Table S902. Gene #82: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
CHEK2 MUTATED	10	0	1	2	0
CHEK2 WILD-TYPE	146	23	53	5	2

'CHEK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S903. Gene #82: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
CHEK2 MUTATED	2	0	4
CHEK2 WILD-TYPE	41	39	49

'CHEK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 1

Table S904. Gene #82: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
CHEK2 MUTATED	2	5	1	1	1	0
CHEK2 WILD-TYPE	37	31	36	9	39	24

'CHEK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S905. Gene #82: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
CHEK2 MUTATED	4	3	3	0
CHEK2 WILD-TYPE	61	61	37	17

'CHEK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S906. Gene #82: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
CHEK2 MUTATED	7	4	2
CHEK2 WILD-TYPE	72	81	79

'CHEK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0615 (Fisher's exact test), Q value = 1

Table S907. Gene #82: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
CHEK2 MUTATED	1	10	2
CHEK2 WILD-TYPE	58	97	77

'CHEK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 1

Table S908. Gene #82: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
CHEK2 MUTATED	7	2	3
CHEK2 WILD-TYPE	71	69	88

'CHEK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 1

Table S909. Gene #82: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
CHEK2 MUTATED	2	2	2	6
CHEK2 WILD-TYPE	44	55	64	65

'CHEK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S910. Gene #82: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
CHEK2 MUTATED	3	0	1
CHEK2 WILD-TYPE	52	35	25

'CHEK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S911. Gene #82: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
CHEK2 MUTATED	1	2	1
CHEK2 WILD-TYPE	42	44	26

'MGA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 1

Table S912. Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
MGA MUTATED	3	2	0	1
MGA WILD-TYPE	9	16	11	9

'MGA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S913. Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
MGA MUTATED	2	0	1	2	1
MGA WILD-TYPE	10	10	6	5	14

'MGA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 1

Table S914. Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
MGA MUTATED	20	1	3	2	0
MGA WILD-TYPE	136	22	51	5	2

'MGA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S915. Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
MGA MUTATED	5	3	5
MGA WILD-TYPE	38	36	48

'MGA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S916. Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
MGA MUTATED	8	6	1	2	3	2
MGA WILD-TYPE	31	30	36	8	37	22

'MGA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S917. Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
MGA MUTATED	11	7	2	2
MGA WILD-TYPE	54	57	38	15

'MGA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0378 (Fisher's exact test), Q value = 1

Table S918. Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
MGA MUTATED	12	10	3
MGA WILD-TYPE	67	75	78

Figure S169. Get High-res Image Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MGA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0395 (Fisher's exact test), Q value = 1

Table S919. Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
MGA MUTATED	6	16	3
MGA WILD-TYPE	53	91	76

Figure S170. Get High-res Image Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MGA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 1

Table S920. Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
MGA MUTATED	8	11	5
MGA WILD-TYPE	70	60	86

'MGA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0515 (Fisher's exact test), Q value = 1

Table S921. Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
MGA MUTATED	2	7	3	12
MGA WILD-TYPE	44	50	63	59

'MGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 1

Table S922. Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
MGA MUTATED	3	5	3
MGA WILD-TYPE	52	30	23

'MGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0388 (Fisher's exact test), Q value = 1

Table S923. Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
MGA MUTATED	3	2	6
MGA WILD-TYPE	40	44	21

Figure S171. Get High-res Image Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RHBDD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S924. Gene #84: 'RHBDD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
RHBDD3 MUTATED	4	0	0	0	0
RHBDD3 WILD-TYPE	152	23	54	7	2

'RHBDD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S925. Gene #84: 'RHBDD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
RHBDD3 MUTATED	0	0	3
RHBDD3 WILD-TYPE	43	39	50

'RHBDD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S926. Gene #84: 'RHBDD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
RHBDD3 MUTATED	0	1	1	0	1	1
RHBDD3 WILD-TYPE	39	35	36	10	39	23

'RHBDD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S927. Gene #84: 'RHBDD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
RHBDD3 MUTATED	1	1	1	1
RHBDD3 WILD-TYPE	64	63	39	16

'RHBDD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S928. Gene #84: 'RHBDD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
RHBDD3 MUTATED	1	3	0
RHBDD3 WILD-TYPE	78	82	81

'RHBDD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S929. Gene #84: 'RHBDD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
RHBDD3 MUTATED	0	3	1
RHBDD3 WILD-TYPE	59	104	78

'RHBDD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S930. Gene #84: 'RHBDD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
RHBDD3 MUTATED	1	2	1
RHBDD3 WILD-TYPE	77	69	90

'RHBDD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S931. Gene #84: 'RHBDD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
RHBDD3 MUTATED	1	0	0	3
RHBDD3 WILD-TYPE	45	57	66	68

'RHBDD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S932. Gene #84: 'RHBDD3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
RHBDD3 MUTATED	1	1	1
RHBDD3 WILD-TYPE	54	34	25

'RHBDD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S933. Gene #84: 'RHBDD3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
RHBDD3 MUTATED	1	0	2
RHBDD3 WILD-TYPE	42	46	25

'TAP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0292 (Fisher's exact test), Q value = 1

Table S934. Gene #85: 'TAP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
TAP1 MUTATED	6	0	0	2	0
TAP1 WILD-TYPE	150	23	54	5	2

Figure S172. Get High-res Image Gene #85: 'TAP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TAP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S935. Gene #85: 'TAP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
TAP1 MUTATED	1	0	2
TAP1 WILD-TYPE	42	39	51

'TAP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S936. Gene #85: 'TAP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
TAP1 MUTATED	1	3	1	0	1	1
TAP1 WILD-TYPE	38	33	36	10	39	23

'TAP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S937. Gene #85: 'TAP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
TAP1 MUTATED	2	3	1	1
TAP1 WILD-TYPE	63	61	39	16

'TAP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S938. Gene #85: 'TAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
TAP1 MUTATED	4	4	0
TAP1 WILD-TYPE	75	81	81

'TAP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S939. Gene #85: 'TAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
TAP1 MUTATED	1	6	1
TAP1 WILD-TYPE	58	101	78

'TAP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S940. Gene #85: 'TAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
TAP1 MUTATED	4	2	1
TAP1 WILD-TYPE	74	69	90

'TAP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0865 (Fisher's exact test), Q value = 1

Table S941. Gene #85: 'TAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
TAP1 MUTATED	1	1	0	5
TAP1 WILD-TYPE	45	56	66	66

'RB1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S942. Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
RB1 MUTATED	1	3	2	0
RB1 WILD-TYPE	11	15	9	10

'RB1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00572 (Fisher's exact test), Q value = 1

Table S943. Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
RB1 MUTATED	5	0	0	1	0
RB1 WILD-TYPE	7	10	7	6	15

Figure S173. Get High-res Image Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'RB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S944. Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
RB1 MUTATED	15	1	2	2	0
RB1 WILD-TYPE	141	22	52	5	2

'RB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 1

Table S945. Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
RB1 MUTATED	2	1	6
RB1 WILD-TYPE	41	38	47

'RB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 1

Table S946. Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
RB1 MUTATED	3	6	2	3	3	1
RB1 WILD-TYPE	36	30	35	7	37	23

'RB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S947. Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
RB1 MUTATED	7	4	6	1
RB1 WILD-TYPE	58	60	34	16

'RB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S948. Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
RB1 MUTATED	9	6	5
RB1 WILD-TYPE	70	79	76

'RB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S949. Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
RB1 MUTATED	2	13	5
RB1 WILD-TYPE	57	94	74

'RB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S950. Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
RB1 MUTATED	9	4	6
RB1 WILD-TYPE	69	67	85

'RB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0912 (Fisher's exact test), Q value = 1

Table S951. Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
RB1 MUTATED	1	5	3	10
RB1 WILD-TYPE	45	52	63	61

'RB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S952. Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
RB1 MUTATED	3	1	1
RB1 WILD-TYPE	52	34	25

'RB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0812 (Fisher's exact test), Q value = 1

Table S953. Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
RB1 MUTATED	4	0	1
RB1 WILD-TYPE	39	46	26

'SLC1A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 1

Table S954. Gene #87: 'SLC1A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
SLC1A3 MUTATED	8	0	2	2	0
SLC1A3 WILD-TYPE	148	23	52	5	2

'SLC1A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S955. Gene #87: 'SLC1A3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
SLC1A3 MUTATED	3	1	2
SLC1A3 WILD-TYPE	40	38	51

'SLC1A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0298 (Fisher's exact test), Q value = 1

Table S956. Gene #87: 'SLC1A3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
SLC1A3 MUTATED	2	4	1	2	0	0
SLC1A3 WILD-TYPE	37	32	36	8	40	24

Figure S174. Get High-res Image Gene #87: 'SLC1A3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'SLC1A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S957. Gene #87: 'SLC1A3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
SLC1A3 MUTATED	4	2	3	0
SLC1A3 WILD-TYPE	61	62	37	17

'SLC1A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S958. Gene #87: 'SLC1A3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
SLC1A3 MUTATED	7	2	3
SLC1A3 WILD-TYPE	72	83	78

'SLC1A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.929 (Fisher's exact test), Q value = 1

Table S959. Gene #87: 'SLC1A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
SLC1A3 MUTATED	3	6	3
SLC1A3 WILD-TYPE	56	101	76

'SLC1A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S960. Gene #87: 'SLC1A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
SLC1A3 MUTATED	3	6	3
SLC1A3 WILD-TYPE	75	65	88

'SLC1A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S961. Gene #87: 'SLC1A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
SLC1A3 MUTATED	0	4	2	6
SLC1A3 WILD-TYPE	46	53	64	65

'SLC1A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S962. Gene #87: 'SLC1A3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
SLC1A3 MUTATED	2	3	1
SLC1A3 WILD-TYPE	53	32	25

'SLC1A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 1

Table S963. Gene #87: 'SLC1A3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
SLC1A3 MUTATED	2	1	3
SLC1A3 WILD-TYPE	41	45	24

'ATAD5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0508 (Fisher's exact test), Q value = 1

Table S964. Gene #88: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
ATAD5 MUTATED	14	0	1	2	0
ATAD5 WILD-TYPE	142	23	53	5	2

'ATAD5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S965. Gene #88: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
ATAD5 MUTATED	3	1	6
ATAD5 WILD-TYPE	40	38	47

'ATAD5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S966. Gene #88: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
ATAD5 MUTATED	2	4	2	2	2	1
ATAD5 WILD-TYPE	37	32	35	8	38	23

'ATAD5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S967. Gene #88: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
ATAD5 MUTATED	4	5	4	0
ATAD5 WILD-TYPE	61	59	36	17

'ATAD5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S968. Gene #88: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
ATAD5 MUTATED	7	5	5
ATAD5 WILD-TYPE	72	80	76

'ATAD5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S969. Gene #88: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
ATAD5 MUTATED	1	11	5
ATAD5 WILD-TYPE	58	96	74

'ATAD5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S970. Gene #88: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
ATAD5 MUTATED	7	3	6
ATAD5 WILD-TYPE	71	68	85

'ATAD5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S971. Gene #88: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
ATAD5 MUTATED	1	4	3	8
ATAD5 WILD-TYPE	45	53	63	63

'ATAD5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S972. Gene #88: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
ATAD5 MUTATED	4	1	2
ATAD5 WILD-TYPE	51	34	24

'ATAD5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.533 (Fisher's exact test), Q value = 1

Table S973. Gene #88: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
ATAD5 MUTATED	2	2	3
ATAD5 WILD-TYPE	41	44	24

'ALG8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S974. Gene #89: 'ALG8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
ALG8 MUTATED	1	1	1	0
ALG8 WILD-TYPE	11	17	10	10

'ALG8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S975. Gene #89: 'ALG8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
ALG8 MUTATED	2	0	1	0	0
ALG8 WILD-TYPE	10	10	6	7	15

'ALG8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 1

Table S976. Gene #89: 'ALG8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
ALG8 MUTATED	8	0	1	1	0
ALG8 WILD-TYPE	148	23	53	6	2

'ALG8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0369 (Fisher's exact test), Q value = 1

Table S977. Gene #89: 'ALG8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
ALG8 MUTATED	0	0	4
ALG8 WILD-TYPE	43	39	49

Figure S175. Get High-res Image Gene #89: 'ALG8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ALG8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S978. Gene #89: 'ALG8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
ALG8 MUTATED	1	3	2	1	1	2
ALG8 WILD-TYPE	38	33	35	9	39	22

'ALG8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S979. Gene #89: 'ALG8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
ALG8 MUTATED	2	4	2	2
ALG8 WILD-TYPE	63	60	38	15

'ALG8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S980. Gene #89: 'ALG8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
ALG8 MUTATED	2	5	3
ALG8 WILD-TYPE	77	80	78

'ALG8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S981. Gene #89: 'ALG8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
ALG8 MUTATED	1	5	4
ALG8 WILD-TYPE	58	102	75

'ALG8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S982. Gene #89: 'ALG8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
ALG8 MUTATED	4	2	4
ALG8 WILD-TYPE	74	69	87

'ALG8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S983. Gene #89: 'ALG8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
ALG8 MUTATED	3	1	3	3
ALG8 WILD-TYPE	43	56	63	68

'ALG8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S984. Gene #89: 'ALG8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
ALG8 MUTATED	2	1	0
ALG8 WILD-TYPE	53	34	26

'ALG8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S985. Gene #89: 'ALG8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
ALG8 MUTATED	1	1	1
ALG8 WILD-TYPE	42	45	26

'TIGD4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S986. Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
TIGD4 MUTATED	1	2	1	0
TIGD4 WILD-TYPE	11	16	10	10

'TIGD4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.586 (Fisher's exact test), Q value = 1

Table S987. Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
TIGD4 MUTATED	2	0	1	0	1
TIGD4 WILD-TYPE	10	10	6	7	14

'TIGD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S988. Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
TIGD4 MUTATED	10	1	1	1	0
TIGD4 WILD-TYPE	146	22	53	6	2

'TIGD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S989. Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
TIGD4 MUTATED	2	1	3
TIGD4 WILD-TYPE	41	38	50

'TIGD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0138 (Fisher's exact test), Q value = 1

Table S990. Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
TIGD4 MUTATED	4	5	1	2	0	0
TIGD4 WILD-TYPE	35	31	36	8	40	24

Figure S176. Get High-res Image Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'TIGD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S991. Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
TIGD4 MUTATED	5	3	4	0
TIGD4 WILD-TYPE	60	61	36	17

'TIGD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S992. Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
TIGD4 MUTATED	6	5	2
TIGD4 WILD-TYPE	73	80	79

'TIGD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0613 (Fisher's exact test), Q value = 1

Table S993. Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
TIGD4 MUTATED	1	10	2
TIGD4 WILD-TYPE	58	97	77

'TIGD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S994. Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
TIGD4 MUTATED	7	3	2
TIGD4 WILD-TYPE	71	68	89

'TIGD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 1

Table S995. Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
TIGD4 MUTATED	1	4	2	5
TIGD4 WILD-TYPE	45	53	64	66

'TIGD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S996. Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
TIGD4 MUTATED	2	2	1
TIGD4 WILD-TYPE	53	33	25

'TIGD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.24 (Fisher's exact test), Q value = 1

Table S997. Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
TIGD4 MUTATED	1	1	3
TIGD4 WILD-TYPE	42	45	24

'PARG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0167 (Fisher's exact test), Q value = 1

Table S998. Gene #91: 'PARG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
PARG MUTATED	7	0	0	1	1
PARG WILD-TYPE	149	23	54	6	1

Figure S177. Get High-res Image Gene #91: 'PARG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PARG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S999. Gene #91: 'PARG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
PARG MUTATED	2	1	3
PARG WILD-TYPE	41	38	50

'PARG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S1000. Gene #91: 'PARG MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
PARG MUTATED	2	3	2	1	0	0
PARG WILD-TYPE	37	33	35	9	40	24

'PARG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S1001. Gene #91: 'PARG MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
PARG MUTATED	2	4	2	0
PARG WILD-TYPE	63	60	38	17

'PARG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S1002. Gene #91: 'PARG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
PARG MUTATED	5	2	1
PARG WILD-TYPE	74	83	80

'PARG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S1003. Gene #91: 'PARG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
PARG MUTATED	1	6	1
PARG WILD-TYPE	58	101	78

'PARG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S1004. Gene #91: 'PARG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
PARG MUTATED	5	3	1
PARG WILD-TYPE	73	68	90

'PARG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 1

Table S1005. Gene #91: 'PARG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
PARG MUTATED	0	4	1	4
PARG WILD-TYPE	46	53	65	67

'PARG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 1

Table S1006. Gene #91: 'PARG MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
PARG MUTATED	1	2	1
PARG WILD-TYPE	54	33	25

'PARG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0566 (Fisher's exact test), Q value = 1

Table S1007. Gene #91: 'PARG MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
PARG MUTATED	0	1	3
PARG WILD-TYPE	43	45	24

'FAT1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00606 (Fisher's exact test), Q value = 1

Table S1008. Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
FAT1 MUTATED	6	5	0	0
FAT1 WILD-TYPE	6	13	11	10

Figure S178. Get High-res Image Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'FAT1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00135 (Fisher's exact test), Q value = 1

Table S1009. Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
FAT1 MUTATED	4	1	1	5	0
FAT1 WILD-TYPE	8	9	6	2	15

Figure S179. Get High-res Image Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'FAT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.028 (Fisher's exact test), Q value = 1

Table S1010. Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
FAT1 MUTATED	31	3	3	3	0
FAT1 WILD-TYPE	125	20	51	4	2

Figure S180. Get High-res Image Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FAT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00645 (Fisher's exact test), Q value = 1

Table S1011. Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
FAT1 MUTATED	4	2	15
FAT1 WILD-TYPE	39	37	38

Figure S181. Get High-res Image Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FAT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 1

Table S1012. Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
FAT1 MUTATED	9	9	7	3	3	4
FAT1 WILD-TYPE	30	27	30	7	37	20

'FAT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S1013. Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
FAT1 MUTATED	14	7	11	3
FAT1 WILD-TYPE	51	57	29	14

'FAT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S1014. Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
FAT1 MUTATED	11	19	10
FAT1 WILD-TYPE	68	66	71

'FAT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.041 (Fisher's exact test), Q value = 1

Table S1015. Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
FAT1 MUTATED	4	23	13
FAT1 WILD-TYPE	55	84	66

Figure S182. Get High-res Image Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FAT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 1

Table S1016. Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
FAT1 MUTATED	16	9	13
FAT1 WILD-TYPE	62	62	78

'FAT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0349 (Fisher's exact test), Q value = 1

Table S1017. Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
FAT1 MUTATED	4	7	8	19
FAT1 WILD-TYPE	42	50	58	52

Figure S183. Get High-res Image Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S1018. Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
FAT1 MUTATED	8	6	4
FAT1 WILD-TYPE	47	29	22

'FAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 1

Table S1019. Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
FAT1 MUTATED	6	5	7
FAT1 WILD-TYPE	37	41	20

'DYM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S1020. Gene #93: 'DYM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
DYM MUTATED	10	0	0	0	0
DYM WILD-TYPE	146	23	54	7	2

'DYM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S1021. Gene #93: 'DYM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
DYM MUTATED	2	0	4
DYM WILD-TYPE	41	39	49

'DYM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S1022. Gene #93: 'DYM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
DYM MUTATED	2	3	2	0	0	2
DYM WILD-TYPE	37	33	35	10	40	22

'DYM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S1023. Gene #93: 'DYM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
DYM MUTATED	4	2	1	2
DYM WILD-TYPE	61	62	39	15

'DYM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S1024. Gene #93: 'DYM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
DYM MUTATED	4	4	2
DYM WILD-TYPE	75	81	79

'DYM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1025. Gene #93: 'DYM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
DYM MUTATED	2	5	3
DYM WILD-TYPE	57	102	76

'DYM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1026. Gene #93: 'DYM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
DYM MUTATED	3	3	3
DYM WILD-TYPE	75	68	88

'DYM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S1027. Gene #93: 'DYM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
DYM MUTATED	1	4	0	4
DYM WILD-TYPE	45	53	66	67

'DYM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S1028. Gene #93: 'DYM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
DYM MUTATED	3	2	0
DYM WILD-TYPE	52	33	26

'DYM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 1

Table S1029. Gene #93: 'DYM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
DYM MUTATED	3	0	2
DYM WILD-TYPE	40	46	25

'PSMD3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S1030. Gene #94: 'PSMD3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
PSMD3 MUTATED	1	2	0	0
PSMD3 WILD-TYPE	11	16	11	10

'PSMD3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S1031. Gene #94: 'PSMD3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
PSMD3 MUTATED	2	0	0	1	0
PSMD3 WILD-TYPE	10	10	7	6	15

'PSMD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S1032. Gene #94: 'PSMD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
PSMD3 MUTATED	9	0	0	1	0
PSMD3 WILD-TYPE	147	23	54	6	2

'PSMD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 1

Table S1033. Gene #94: 'PSMD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
PSMD3 MUTATED	3	1	1
PSMD3 WILD-TYPE	40	38	52

'PSMD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 1

Table S1034. Gene #94: 'PSMD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
PSMD3 MUTATED	5	1	1	0	2	0
PSMD3 WILD-TYPE	34	35	36	10	38	24

'PSMD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S1035. Gene #94: 'PSMD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
PSMD3 MUTATED	4	4	1	0
PSMD3 WILD-TYPE	61	60	39	17

'PSMD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S1036. Gene #94: 'PSMD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
PSMD3 MUTATED	5	4	2
PSMD3 WILD-TYPE	74	81	79

'PSMD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S1037. Gene #94: 'PSMD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
PSMD3 MUTATED	3	6	2
PSMD3 WILD-TYPE	56	101	77

'PSMD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S1038. Gene #94: 'PSMD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
PSMD3 MUTATED	5	4	2
PSMD3 WILD-TYPE	73	67	89

'PSMD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S1039. Gene #94: 'PSMD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
PSMD3 MUTATED	2	4	2	3
PSMD3 WILD-TYPE	44	53	64	68

'PSMD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S1040. Gene #94: 'PSMD3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
PSMD3 MUTATED	1	2	1
PSMD3 WILD-TYPE	54	33	25

'PSMD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S1041. Gene #94: 'PSMD3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
PSMD3 MUTATED	1	1	2
PSMD3 WILD-TYPE	42	45	25

'PPM1D MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S1042. Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
PPM1D MUTATED	2	1	0	0
PPM1D WILD-TYPE	10	17	11	10

'PPM1D MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 1

Table S1043. Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
PPM1D MUTATED	1	0	1	1	0
PPM1D WILD-TYPE	11	10	6	6	15

'PPM1D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 1

Table S1044. Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
PPM1D MUTATED	10	0	0	1	0
PPM1D WILD-TYPE	146	23	54	6	2

'PPM1D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S1045. Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
PPM1D MUTATED	0	1	4
PPM1D WILD-TYPE	43	38	49

'PPM1D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 1

Table S1046. Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
PPM1D MUTATED	2	5	2	1	1	0
PPM1D WILD-TYPE	37	31	35	9	39	24

'PPM1D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S1047. Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
PPM1D MUTATED	5	3	3	0
PPM1D WILD-TYPE	60	61	37	17

'PPM1D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 1

Table S1048. Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
PPM1D MUTATED	3	6	2
PPM1D WILD-TYPE	76	79	79

'PPM1D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0291 (Fisher's exact test), Q value = 1

Table S1049. Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
PPM1D MUTATED	0	9	2
PPM1D WILD-TYPE	59	98	77

Figure S184. Get High-res Image Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PPM1D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S1050. Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
PPM1D MUTATED	4	4	2
PPM1D WILD-TYPE	74	67	89

'PPM1D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S1051. Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
PPM1D MUTATED	2	1	1	6
PPM1D WILD-TYPE	44	56	65	65

'PPM1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S1052. Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
PPM1D MUTATED	1	2	1
PPM1D WILD-TYPE	54	33	25

'PPM1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S1053. Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
PPM1D MUTATED	1	1	2
PPM1D WILD-TYPE	42	45	25

'ZMYM2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 1

Table S1054. Gene #96: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
ZMYM2 MUTATED	2	1	0	0
ZMYM2 WILD-TYPE	10	17	11	10

'ZMYM2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0776 (Fisher's exact test), Q value = 1

Table S1055. Gene #96: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
ZMYM2 MUTATED	1	0	0	2	0
ZMYM2 WILD-TYPE	11	10	7	5	15

'ZMYM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0558 (Fisher's exact test), Q value = 1

Table S1056. Gene #96: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
ZMYM2 MUTATED	13	0	1	2	0
ZMYM2 WILD-TYPE	143	23	53	5	2

'ZMYM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1057. Gene #96: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
ZMYM2 MUTATED	3	2	4
ZMYM2 WILD-TYPE	40	37	49

'ZMYM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S1058. Gene #96: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
ZMYM2 MUTATED	3	5	2	1	1	1
ZMYM2 WILD-TYPE	36	31	35	9	39	23

'ZMYM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S1059. Gene #96: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
ZMYM2 MUTATED	6	3	3	1
ZMYM2 WILD-TYPE	59	61	37	16

'ZMYM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S1060. Gene #96: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
ZMYM2 MUTATED	8	6	3
ZMYM2 WILD-TYPE	71	79	78

'ZMYM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S1061. Gene #96: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
ZMYM2 MUTATED	3	11	3
ZMYM2 WILD-TYPE	56	96	76

'ZMYM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S1062. Gene #96: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
ZMYM2 MUTATED	6	5	5
ZMYM2 WILD-TYPE	72	66	86

'ZMYM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S1063. Gene #96: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
ZMYM2 MUTATED	1	5	2	8
ZMYM2 WILD-TYPE	45	52	64	63

'ZMYM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 1

Table S1064. Gene #96: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
ZMYM2 MUTATED	1	3	1
ZMYM2 WILD-TYPE	54	32	25

'ZMYM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S1065. Gene #96: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
ZMYM2 MUTATED	3	0	2
ZMYM2 WILD-TYPE	40	46	25

'INPP4B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S1066. Gene #97: 'INPP4B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
INPP4B MUTATED	1	3	0	0
INPP4B WILD-TYPE	11	15	11	10

'INPP4B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0765 (Fisher's exact test), Q value = 1

Table S1067. Gene #97: 'INPP4B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
INPP4B MUTATED	3	0	1	0	0
INPP4B WILD-TYPE	9	10	6	7	15

'INPP4B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 1

Table S1068. Gene #97: 'INPP4B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
INPP4B MUTATED	10	0	0	1	0
INPP4B WILD-TYPE	146	23	54	6	2

'INPP4B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0281 (Fisher's exact test), Q value = 1

Table S1069. Gene #97: 'INPP4B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
INPP4B MUTATED	1	4	2	2	0	0
INPP4B WILD-TYPE	38	32	35	8	40	24

Figure S185. Get High-res Image Gene #97: 'INPP4B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'INPP4B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S1070. Gene #97: 'INPP4B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
INPP4B MUTATED	4	1	4	0
INPP4B WILD-TYPE	61	63	36	17

'INPP4B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1071. Gene #97: 'INPP4B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
INPP4B MUTATED	4	4	4
INPP4B WILD-TYPE	75	81	77

'INPP4B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0711 (Fisher's exact test), Q value = 1

Table S1072. Gene #97: 'INPP4B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
INPP4B MUTATED	0	8	4
INPP4B WILD-TYPE	59	99	75

'INPP4B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S1073. Gene #97: 'INPP4B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
INPP4B MUTATED	5	2	4
INPP4B WILD-TYPE	73	69	87

'INPP4B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S1074. Gene #97: 'INPP4B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
INPP4B MUTATED	1	3	2	5
INPP4B WILD-TYPE	45	54	64	66

'USP28 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S1075. Gene #98: 'USP28 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
USP28 MUTATED	9	0	0	1	0
USP28 WILD-TYPE	147	23	54	6	2

'USP28 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S1076. Gene #98: 'USP28 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
USP28 MUTATED	1	0	4
USP28 WILD-TYPE	42	39	49

'USP28 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S1077. Gene #98: 'USP28 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
USP28 MUTATED	2	1	2	1	2	1
USP28 WILD-TYPE	37	35	35	9	38	23

'USP28 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S1078. Gene #98: 'USP28 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
USP28 MUTATED	2	3	3	1
USP28 WILD-TYPE	63	61	37	16

'USP28 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S1079. Gene #98: 'USP28 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
USP28 MUTATED	2	6	2
USP28 WILD-TYPE	77	79	79

'USP28 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S1080. Gene #98: 'USP28 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
USP28 MUTATED	1	5	4
USP28 WILD-TYPE	58	102	75

'USP28 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1081. Gene #98: 'USP28 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
USP28 MUTATED	3	3	4
USP28 WILD-TYPE	75	68	87

'USP28 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0596 (Fisher's exact test), Q value = 1

Table S1082. Gene #98: 'USP28 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
USP28 MUTATED	1	3	0	6
USP28 WILD-TYPE	45	54	66	65

'USP28 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S1083. Gene #98: 'USP28 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
USP28 MUTATED	3	1	0
USP28 WILD-TYPE	52	34	26

'USP28 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S1084. Gene #98: 'USP28 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
USP28 MUTATED	3	0	1
USP28 WILD-TYPE	40	46	26

'EMR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S1085. Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
EMR1 MUTATED	2	1	1	0
EMR1 WILD-TYPE	10	17	10	10

'EMR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0918 (Fisher's exact test), Q value = 1

Table S1086. Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
EMR1 MUTATED	1	0	2	1	0
EMR1 WILD-TYPE	11	10	5	6	15

'EMR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S1087. Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
EMR1 MUTATED	13	0	0	0	0
EMR1 WILD-TYPE	143	23	54	7	2

'EMR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 1

Table S1088. Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
EMR1 MUTATED	2	0	4
EMR1 WILD-TYPE	41	39	49

'EMR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 1

Table S1089. Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
EMR1 MUTATED	4	3	3	1	0	1
EMR1 WILD-TYPE	35	33	34	9	40	23

'EMR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S1090. Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
EMR1 MUTATED	3	5	3	1
EMR1 WILD-TYPE	62	59	37	16

'EMR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S1091. Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
EMR1 MUTATED	4	6	3
EMR1 WILD-TYPE	75	79	78

'EMR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S1092. Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
EMR1 MUTATED	1	8	4
EMR1 WILD-TYPE	58	99	75

'EMR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S1093. Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
EMR1 MUTATED	5	2	5
EMR1 WILD-TYPE	73	69	86

'EMR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S1094. Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
EMR1 MUTATED	2	3	1	6
EMR1 WILD-TYPE	44	54	65	65

'EMR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1095. Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
EMR1 MUTATED	3	1	1
EMR1 WILD-TYPE	52	34	25

'EMR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.042 (Fisher's exact test), Q value = 1

Table S1096. Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
EMR1 MUTATED	2	0	3
EMR1 WILD-TYPE	41	46	24

Figure S186. Get High-res Image Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZNF385B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S1097. Gene #100: 'ZNF385B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
ZNF385B MUTATED	6	0	0	1	0
ZNF385B WILD-TYPE	150	23	54	6	2

'ZNF385B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S1098. Gene #100: 'ZNF385B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
ZNF385B MUTATED	1	1	3
ZNF385B WILD-TYPE	42	38	50

'ZNF385B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S1099. Gene #100: 'ZNF385B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
ZNF385B MUTATED	2	3	0	1	0	1
ZNF385B WILD-TYPE	37	33	37	9	40	23

'ZNF385B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S1100. Gene #100: 'ZNF385B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
ZNF385B MUTATED	3	2	1	1
ZNF385B WILD-TYPE	62	62	39	16

'ZNF385B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 1

Table S1101. Gene #100: 'ZNF385B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
ZNF385B MUTATED	4	2	1
ZNF385B WILD-TYPE	75	83	80

'ZNF385B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S1102. Gene #100: 'ZNF385B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
ZNF385B MUTATED	0	5	2
ZNF385B WILD-TYPE	59	102	77

'ZNF385B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S1103. Gene #100: 'ZNF385B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
ZNF385B MUTATED	3	1	2
ZNF385B WILD-TYPE	75	70	89

'ZNF385B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S1104. Gene #100: 'ZNF385B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
ZNF385B MUTATED	1	2	1	2
ZNF385B WILD-TYPE	45	55	65	69

'ZNF385B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S1105. Gene #100: 'ZNF385B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
ZNF385B MUTATED	2	0	1
ZNF385B WILD-TYPE	53	35	25

'ZNF385B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1106. Gene #100: 'ZNF385B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
ZNF385B MUTATED	1	1	1
ZNF385B WILD-TYPE	42	45	26

'RAE1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S1107. Gene #101: 'RAE1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
RAE1 MUTATED	1	3	0	0
RAE1 WILD-TYPE	11	15	11	10

'RAE1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0776 (Fisher's exact test), Q value = 1

Table S1108. Gene #101: 'RAE1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
RAE1 MUTATED	3	0	1	0	0
RAE1 WILD-TYPE	9	10	6	7	15

'RAE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0719 (Fisher's exact test), Q value = 1

Table S1109. Gene #101: 'RAE1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
RAE1 MUTATED	8	0	1	2	0
RAE1 WILD-TYPE	148	23	53	5	2

'RAE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S1110. Gene #101: 'RAE1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
RAE1 MUTATED	1	0	4
RAE1 WILD-TYPE	42	39	49

'RAE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 1

Table S1111. Gene #101: 'RAE1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
RAE1 MUTATED	1	3	3	1	0	1
RAE1 WILD-TYPE	38	33	34	9	40	23

'RAE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S1112. Gene #101: 'RAE1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
RAE1 MUTATED	3	1	4	1
RAE1 WILD-TYPE	62	63	36	16

'RAE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S1113. Gene #101: 'RAE1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
RAE1 MUTATED	5	4	2
RAE1 WILD-TYPE	74	81	79

'RAE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S1114. Gene #101: 'RAE1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
RAE1 MUTATED	2	7	2
RAE1 WILD-TYPE	57	100	77

'RAE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S1115. Gene #101: 'RAE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
RAE1 MUTATED	4	4	2
RAE1 WILD-TYPE	74	67	89

'RAE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S1116. Gene #101: 'RAE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
RAE1 MUTATED	0	4	1	5
RAE1 WILD-TYPE	46	53	65	66

'RAE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S1117. Gene #101: 'RAE1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
RAE1 MUTATED	2	2	1
RAE1 WILD-TYPE	53	33	25

'RAE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S1118. Gene #101: 'RAE1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
RAE1 MUTATED	2	1	2
RAE1 WILD-TYPE	41	45	25

'TRIM59 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0557 (Fisher's exact test), Q value = 1

Table S1119. Gene #102: 'TRIM59 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
TRIM59 MUTATED	8	0	0	0	1
TRIM59 WILD-TYPE	148	23	54	7	1

'TRIM59 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S1120. Gene #102: 'TRIM59 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
TRIM59 MUTATED	1	2	2
TRIM59 WILD-TYPE	42	37	51

'TRIM59 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S1121. Gene #102: 'TRIM59 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
TRIM59 MUTATED	1	1	3	2	1	0
TRIM59 WILD-TYPE	38	35	34	8	39	24

'TRIM59 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.326 (Fisher's exact test), Q value = 1

Table S1122. Gene #102: 'TRIM59 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
TRIM59 MUTATED	1	4	3	0
TRIM59 WILD-TYPE	64	60	37	17

'TRIM59 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.641 (Fisher's exact test), Q value = 1

Table S1123. Gene #102: 'TRIM59 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
TRIM59 MUTATED	3	2	4
TRIM59 WILD-TYPE	76	83	77

'TRIM59 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S1124. Gene #102: 'TRIM59 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
TRIM59 MUTATED	0	5	4
TRIM59 WILD-TYPE	59	102	75

'TRIM59 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S1125. Gene #102: 'TRIM59 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
TRIM59 MUTATED	3	1	4
TRIM59 WILD-TYPE	75	70	87

'TRIM59 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S1126. Gene #102: 'TRIM59 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
TRIM59 MUTATED	0	1	2	5
TRIM59 WILD-TYPE	46	56	64	66

'TRIM59 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S1127. Gene #102: 'TRIM59 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
TRIM59 MUTATED	2	0	2
TRIM59 WILD-TYPE	53	35	24

'TRIM59 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S1128. Gene #102: 'TRIM59 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
TRIM59 MUTATED	2	0	2
TRIM59 WILD-TYPE	41	46	25

'ZNF721 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1129. Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
ZNF721 MUTATED	1	1	1	0
ZNF721 WILD-TYPE	11	17	10	10

'ZNF721 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0784 (Fisher's exact test), Q value = 1

Table S1130. Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
ZNF721 MUTATED	1	0	2	0	0
ZNF721 WILD-TYPE	11	10	5	7	15

'ZNF721 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.022 (Fisher's exact test), Q value = 1

Table S1131. Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
ZNF721 MUTATED	11	0	0	2	0
ZNF721 WILD-TYPE	145	23	54	5	2

Figure S187. Get High-res Image Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF721 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S1132. Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
ZNF721 MUTATED	2	1	4
ZNF721 WILD-TYPE	41	38	49

'ZNF721 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0443 (Fisher's exact test), Q value = 1

Table S1133. Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
ZNF721 MUTATED	4	4	0	1	0	2
ZNF721 WILD-TYPE	35	32	37	9	40	22

Figure S188. Get High-res Image Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ZNF721 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S1134. Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
ZNF721 MUTATED	4	5	1	1
ZNF721 WILD-TYPE	61	59	39	16

'ZNF721 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S1135. Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
ZNF721 MUTATED	6	4	3
ZNF721 WILD-TYPE	73	81	78

'ZNF721 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 1

Table S1136. Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
ZNF721 MUTATED	1	8	4
ZNF721 WILD-TYPE	58	99	75

'ZNF721 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S1137. Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
ZNF721 MUTATED	6	3	3
ZNF721 WILD-TYPE	72	68	88

'ZNF721 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S1138. Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
ZNF721 MUTATED	2	3	2	5
ZNF721 WILD-TYPE	44	54	64	66

'ZNF721 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1139. Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
ZNF721 MUTATED	3	1	1
ZNF721 WILD-TYPE	52	34	25

'ZNF721 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S1140. Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
ZNF721 MUTATED	1	2	2
ZNF721 WILD-TYPE	42	44	25

'MCTP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S1141. Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
MCTP1 MUTATED	2	1	0	0
MCTP1 WILD-TYPE	10	17	11	10

'MCTP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S1142. Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
MCTP1 MUTATED	0	1	1	1	0
MCTP1 WILD-TYPE	12	9	6	6	15

'MCTP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S1143. Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
MCTP1 MUTATED	11	0	1	1	0
MCTP1 WILD-TYPE	145	23	53	6	2

'MCTP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 1

Table S1144. Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
MCTP1 MUTATED	3	1	2
MCTP1 WILD-TYPE	40	38	51

'MCTP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 1

Table S1145. Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
MCTP1 MUTATED	5	2	2	1	1	0
MCTP1 WILD-TYPE	34	34	35	9	39	24

'MCTP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S1146. Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
MCTP1 MUTATED	4	4	3	0
MCTP1 WILD-TYPE	61	60	37	17

'MCTP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 1

Table S1147. Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
MCTP1 MUTATED	6	4	3
MCTP1 WILD-TYPE	73	81	78

'MCTP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S1148. Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
MCTP1 MUTATED	2	8	3
MCTP1 WILD-TYPE	57	99	76

'MCTP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S1149. Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
MCTP1 MUTATED	7	2	3
MCTP1 WILD-TYPE	71	69	88

'MCTP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S1150. Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
MCTP1 MUTATED	2	3	2	5
MCTP1 WILD-TYPE	44	54	64	66

'MCTP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 1

Table S1151. Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
MCTP1 MUTATED	1	1	2
MCTP1 WILD-TYPE	54	34	24

'MCTP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0378 (Fisher's exact test), Q value = 1

Table S1152. Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
MCTP1 MUTATED	1	0	3
MCTP1 WILD-TYPE	42	46	24

Figure S189. Get High-res Image Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZNF774 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S1153. Gene #105: 'ZNF774 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
ZNF774 MUTATED	9	0	1	0	0
ZNF774 WILD-TYPE	147	23	53	7	2

'ZNF774 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S1154. Gene #105: 'ZNF774 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
ZNF774 MUTATED	3	1	2
ZNF774 WILD-TYPE	40	38	51

'ZNF774 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S1155. Gene #105: 'ZNF774 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
ZNF774 MUTATED	4	1	1	1	2	0
ZNF774 WILD-TYPE	35	35	36	9	38	24

'ZNF774 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S1156. Gene #105: 'ZNF774 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
ZNF774 MUTATED	3	4	2	0
ZNF774 WILD-TYPE	62	60	38	17

'ZNF774 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S1157. Gene #105: 'ZNF774 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
ZNF774 MUTATED	3	5	2
ZNF774 WILD-TYPE	76	80	79

'ZNF774 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S1158. Gene #105: 'ZNF774 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
ZNF774 MUTATED	2	6	2
ZNF774 WILD-TYPE	57	101	77

'ZNF774 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S1159. Gene #105: 'ZNF774 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
ZNF774 MUTATED	5	3	2
ZNF774 WILD-TYPE	73	68	89

'ZNF774 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 1

Table S1160. Gene #105: 'ZNF774 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
ZNF774 MUTATED	1	3	1	5
ZNF774 WILD-TYPE	45	54	65	66

'ZNF774 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S1161. Gene #105: 'ZNF774 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
ZNF774 MUTATED	2	2	2
ZNF774 WILD-TYPE	53	33	24

'ZNF774 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S1162. Gene #105: 'ZNF774 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
ZNF774 MUTATED	2	1	3
ZNF774 WILD-TYPE	41	45	24

'FAM9A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S1163. Gene #106: 'FAM9A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
FAM9A MUTATED	10	0	3	1	0
FAM9A WILD-TYPE	146	23	51	6	2

'FAM9A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0679 (Fisher's exact test), Q value = 1

Table S1164. Gene #106: 'FAM9A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
FAM9A MUTATED	5	0	5
FAM9A WILD-TYPE	38	39	48

'FAM9A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S1165. Gene #106: 'FAM9A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
FAM9A MUTATED	3	5	2	0	0	1
FAM9A WILD-TYPE	36	31	35	10	40	23

'FAM9A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.535 (Fisher's exact test), Q value = 1

Table S1166. Gene #106: 'FAM9A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
FAM9A MUTATED	6	3	1	1
FAM9A WILD-TYPE	59	61	39	16

'FAM9A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0725 (Fisher's exact test), Q value = 1

Table S1167. Gene #106: 'FAM9A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
FAM9A MUTATED	7	6	1
FAM9A WILD-TYPE	72	79	80

'FAM9A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 1

Table S1168. Gene #106: 'FAM9A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
FAM9A MUTATED	5	7	2
FAM9A WILD-TYPE	54	100	77

'FAM9A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S1169. Gene #106: 'FAM9A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
FAM9A MUTATED	5	5	4
FAM9A WILD-TYPE	73	66	87

'FAM9A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 1

Table S1170. Gene #106: 'FAM9A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
FAM9A MUTATED	2	6	1	5
FAM9A WILD-TYPE	44	51	65	66

'FAM9A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0217 (Fisher's exact test), Q value = 1

Table S1171. Gene #106: 'FAM9A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
FAM9A MUTATED	2	6	0
FAM9A WILD-TYPE	53	29	26

Figure S190. Get High-res Image Gene #106: 'FAM9A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'FAM9A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0187 (Fisher's exact test), Q value = 1

Table S1172. Gene #106: 'FAM9A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
FAM9A MUTATED	4	0	4
FAM9A WILD-TYPE	39	46	23

Figure S191. Get High-res Image Gene #106: 'FAM9A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CFP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S1173. Gene #107: 'CFP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
CFP MUTATED	7	0	0	1	0
CFP WILD-TYPE	149	23	54	6	2

'CFP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1174. Gene #107: 'CFP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
CFP MUTATED	2	1	2
CFP WILD-TYPE	41	38	51

'CFP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 1

Table S1175. Gene #107: 'CFP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
CFP MUTATED	2	0	0	1	2	0
CFP WILD-TYPE	37	36	37	9	38	24

'CFP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S1176. Gene #107: 'CFP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
CFP MUTATED	2	3	0	0
CFP WILD-TYPE	63	61	40	17

'CFP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S1177. Gene #107: 'CFP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
CFP MUTATED	4	3	1
CFP WILD-TYPE	75	82	80

'CFP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1178. Gene #107: 'CFP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
CFP MUTATED	2	4	2
CFP WILD-TYPE	57	103	77

'CFP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S1179. Gene #107: 'CFP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
CFP MUTATED	3	3	2
CFP WILD-TYPE	75	68	89

'CFP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S1180. Gene #107: 'CFP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
CFP MUTATED	1	2	1	4
CFP WILD-TYPE	45	55	65	67

'CFP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S1181. Gene #107: 'CFP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
CFP MUTATED	1	3	1
CFP WILD-TYPE	54	32	25

'CFP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S1182. Gene #107: 'CFP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
CFP MUTATED	2	1	2
CFP WILD-TYPE	41	45	25

'PER3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0266 (Fisher's exact test), Q value = 1

Table S1183. Gene #108: 'PER3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
PER3 MUTATED	10	0	0	2	0
PER3 WILD-TYPE	146	23	54	5	2

Figure S192. Get High-res Image Gene #108: 'PER3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PER3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 1

Table S1184. Gene #108: 'PER3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
PER3 MUTATED	2	0	5
PER3 WILD-TYPE	41	39	48

'PER3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S1185. Gene #108: 'PER3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
PER3 MUTATED	3	5	2	0	0	1
PER3 WILD-TYPE	36	31	35	10	40	23

'PER3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S1186. Gene #108: 'PER3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
PER3 MUTATED	4	5	1	1
PER3 WILD-TYPE	61	59	39	16

'PER3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0748 (Fisher's exact test), Q value = 1

Table S1187. Gene #108: 'PER3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
PER3 MUTATED	7	4	1
PER3 WILD-TYPE	72	81	80

'PER3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S1188. Gene #108: 'PER3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
PER3 MUTATED	1	9	2
PER3 WILD-TYPE	58	98	77

'PER3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S1189. Gene #108: 'PER3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
PER3 MUTATED	5	3	3
PER3 WILD-TYPE	73	68	88

'PER3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S1190. Gene #108: 'PER3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
PER3 MUTATED	1	3	1	6
PER3 WILD-TYPE	45	54	65	65

'PER3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S1191. Gene #108: 'PER3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
PER3 MUTATED	2	2	1
PER3 WILD-TYPE	53	33	25

'PER3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00536 (Fisher's exact test), Q value = 1

Table S1192. Gene #108: 'PER3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
PER3 MUTATED	1	0	4
PER3 WILD-TYPE	42	46	23

Figure S193. Get High-res Image Gene #108: 'PER3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZRANB3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S1193. Gene #109: 'ZRANB3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
ZRANB3 MUTATED	1	2	0	0
ZRANB3 WILD-TYPE	11	16	11	10

'ZRANB3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S1194. Gene #109: 'ZRANB3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
ZRANB3 MUTATED	2	0	0	1	0
ZRANB3 WILD-TYPE	10	10	7	6	15

'ZRANB3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 1

Table S1195. Gene #109: 'ZRANB3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
ZRANB3 MUTATED	7	0	0	1	0
ZRANB3 WILD-TYPE	149	23	54	6	2

'ZRANB3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S1196. Gene #109: 'ZRANB3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
ZRANB3 MUTATED	1	3	1	1	1	0
ZRANB3 WILD-TYPE	38	33	36	9	39	24

'ZRANB3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S1197. Gene #109: 'ZRANB3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
ZRANB3 MUTATED	4	1	2	0
ZRANB3 WILD-TYPE	61	63	38	17

'ZRANB3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0934 (Fisher's exact test), Q value = 1

Table S1198. Gene #109: 'ZRANB3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
ZRANB3 MUTATED	3	5	0
ZRANB3 WILD-TYPE	76	80	81

'ZRANB3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.023 (Fisher's exact test), Q value = 1

Table S1199. Gene #109: 'ZRANB3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
ZRANB3 MUTATED	1	7	0
ZRANB3 WILD-TYPE	58	100	79

Figure S194. Get High-res Image Gene #109: 'ZRANB3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZRANB3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0563 (Fisher's exact test), Q value = 1

Table S1200. Gene #109: 'ZRANB3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
ZRANB3 MUTATED	4	3	0
ZRANB3 WILD-TYPE	74	68	91

'ZRANB3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0696 (Fisher's exact test), Q value = 1

Table S1201. Gene #109: 'ZRANB3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
ZRANB3 MUTATED	0	3	0	4
ZRANB3 WILD-TYPE	46	54	66	67

'OMA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0298 (Fisher's exact test), Q value = 1

Table S1202. Gene #110: 'OMA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
OMA1 MUTATED	7	0	0	2	0
OMA1 WILD-TYPE	149	23	54	5	2

Figure S195. Get High-res Image Gene #110: 'OMA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'OMA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S1203. Gene #110: 'OMA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
OMA1 MUTATED	1	1	4
OMA1 WILD-TYPE	42	38	49

'OMA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S1204. Gene #110: 'OMA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
OMA1 MUTATED	4	2	1	1	0	1
OMA1 WILD-TYPE	35	34	36	9	40	23

'OMA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S1205. Gene #110: 'OMA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
OMA1 MUTATED	3	4	1	1
OMA1 WILD-TYPE	62	60	39	16

'OMA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1206. Gene #110: 'OMA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
OMA1 MUTATED	3	4	3
OMA1 WILD-TYPE	76	81	78

'OMA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S1207. Gene #110: 'OMA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
OMA1 MUTATED	0	6	4
OMA1 WILD-TYPE	59	101	75

'OMA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S1208. Gene #110: 'OMA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
OMA1 MUTATED	4	1	5
OMA1 WILD-TYPE	74	70	86

'OMA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S1209. Gene #110: 'OMA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
OMA1 MUTATED	2	0	3	5
OMA1 WILD-TYPE	44	57	63	66

'OMA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S1210. Gene #110: 'OMA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
OMA1 MUTATED	4	0	1
OMA1 WILD-TYPE	51	35	25

'OMA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S1211. Gene #110: 'OMA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
OMA1 MUTATED	1	2	2
OMA1 WILD-TYPE	42	44	25

'CLDN15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S1212. Gene #111: 'CLDN15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
CLDN15 MUTATED	5	0	0	0	0
CLDN15 WILD-TYPE	151	23	54	7	2

'CLDN15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 1

Table S1213. Gene #111: 'CLDN15 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
CLDN15 MUTATED	0	1	3
CLDN15 WILD-TYPE	43	38	50

'CLDN15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 1

Table S1214. Gene #111: 'CLDN15 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
CLDN15 MUTATED	1	1	2	0	0	0
CLDN15 WILD-TYPE	38	35	35	10	40	24

'CLDN15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.692 (Fisher's exact test), Q value = 1

Table S1215. Gene #111: 'CLDN15 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
CLDN15 MUTATED	1	1	2	0
CLDN15 WILD-TYPE	64	63	38	17

'CLDN15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 1

Table S1216. Gene #111: 'CLDN15 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
CLDN15 MUTATED	0	4	1
CLDN15 WILD-TYPE	79	81	80

'CLDN15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S1217. Gene #111: 'CLDN15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
CLDN15 MUTATED	0	4	1
CLDN15 WILD-TYPE	59	103	78

'CLDN15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S1218. Gene #111: 'CLDN15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
CLDN15 MUTATED	3	0	2
CLDN15 WILD-TYPE	75	71	89

'CLDN15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0604 (Fisher's exact test), Q value = 1

Table S1219. Gene #111: 'CLDN15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
CLDN15 MUTATED	1	0	0	4
CLDN15 WILD-TYPE	45	57	66	67

'CLDN15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S1220. Gene #111: 'CLDN15 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
CLDN15 MUTATED	1	1	1
CLDN15 WILD-TYPE	54	34	25

'CLDN15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S1221. Gene #111: 'CLDN15 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
CLDN15 MUTATED	1	0	2
CLDN15 WILD-TYPE	42	46	25

'TTC39C MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S1222. Gene #112: 'TTC39C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
TTC39C MUTATED	1	2	0	0
TTC39C WILD-TYPE	11	16	11	10

'TTC39C MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S1223. Gene #112: 'TTC39C MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
TTC39C MUTATED	2	0	0	1	0
TTC39C WILD-TYPE	10	10	7	6	15

'TTC39C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S1224. Gene #112: 'TTC39C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
TTC39C MUTATED	6	0	0	1	0
TTC39C WILD-TYPE	150	23	54	6	2

'TTC39C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0862 (Fisher's exact test), Q value = 1

Table S1225. Gene #112: 'TTC39C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
TTC39C MUTATED	1	4	1	1	0	0
TTC39C WILD-TYPE	38	32	36	9	40	24

'TTC39C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S1226. Gene #112: 'TTC39C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
TTC39C MUTATED	4	1	2	0
TTC39C WILD-TYPE	61	63	38	17

'TTC39C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S1227. Gene #112: 'TTC39C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
TTC39C MUTATED	2	4	1
TTC39C WILD-TYPE	77	81	80

'TTC39C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0943 (Fisher's exact test), Q value = 1

Table S1228. Gene #112: 'TTC39C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
TTC39C MUTATED	0	6	1
TTC39C WILD-TYPE	59	101	78

'TTC39C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S1229. Gene #112: 'TTC39C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
TTC39C MUTATED	4	1	1
TTC39C WILD-TYPE	74	70	90

'TTC39C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S1230. Gene #112: 'TTC39C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
TTC39C MUTATED	0	2	1	3
TTC39C WILD-TYPE	46	55	65	68

'TXNRD1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S1231. Gene #113: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
TXNRD1 MUTATED	1	2	0	0
TXNRD1 WILD-TYPE	11	16	11	10

'TXNRD1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S1232. Gene #113: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
TXNRD1 MUTATED	2	0	0	1	0
TXNRD1 WILD-TYPE	10	10	7	6	15

'TXNRD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S1233. Gene #113: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
TXNRD1 MUTATED	6	0	1	1	0
TXNRD1 WILD-TYPE	150	23	53	6	2

'TXNRD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S1234. Gene #113: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
TXNRD1 MUTATED	1	0	3
TXNRD1 WILD-TYPE	42	39	50

'TXNRD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S1235. Gene #113: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
TXNRD1 MUTATED	1	4	2	0	1	0
TXNRD1 WILD-TYPE	38	32	35	10	39	24

'TXNRD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S1236. Gene #113: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
TXNRD1 MUTATED	4	2	2	0
TXNRD1 WILD-TYPE	61	62	38	17

'TXNRD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S1237. Gene #113: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
TXNRD1 MUTATED	4	3	1
TXNRD1 WILD-TYPE	75	82	80

'TXNRD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S1238. Gene #113: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
TXNRD1 MUTATED	2	5	1
TXNRD1 WILD-TYPE	57	102	78

'TXNRD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 1

Table S1239. Gene #113: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
TXNRD1 MUTATED	5	2	1
TXNRD1 WILD-TYPE	73	69	90

'TXNRD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0351 (Fisher's exact test), Q value = 1

Table S1240. Gene #113: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
TXNRD1 MUTATED	0	3	0	5
TXNRD1 WILD-TYPE	46	54	66	66

Figure S196. Get High-res Image Gene #113: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MECOM MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.537 (Fisher's exact test), Q value = 1

Table S1241. Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
MECOM MUTATED	2	2	0	0
MECOM WILD-TYPE	10	16	11	10

'MECOM MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.047 (Fisher's exact test), Q value = 1

Table S1242. Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
MECOM MUTATED	2	0	0	2	0
MECOM WILD-TYPE	10	10	7	5	15

Figure S197. Get High-res Image Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MECOM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S1243. Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
MECOM MUTATED	11	1	0	0	0
MECOM WILD-TYPE	145	22	54	7	2

'MECOM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S1244. Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
MECOM MUTATED	1	2	4
MECOM WILD-TYPE	42	37	49

'MECOM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 1

Table S1245. Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
MECOM MUTATED	2	1	1	0	5	2
MECOM WILD-TYPE	37	35	36	10	35	22

'MECOM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0933 (Fisher's exact test), Q value = 1

Table S1246. Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
MECOM MUTATED	2	5	1	3
MECOM WILD-TYPE	63	59	39	14

'MECOM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S1247. Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
MECOM MUTATED	2	5	4
MECOM WILD-TYPE	77	80	77

'MECOM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S1248. Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
MECOM MUTATED	1	5	5
MECOM WILD-TYPE	58	102	74

'MECOM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S1249. Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
MECOM MUTATED	4	1	6
MECOM WILD-TYPE	74	70	85

'MECOM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.973 (Fisher's exact test), Q value = 1

Table S1250. Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
MECOM MUTATED	2	2	3	4
MECOM WILD-TYPE	44	55	63	67

'MECOM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S1251. Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
MECOM MUTATED	6	1	0
MECOM WILD-TYPE	49	34	26

'MECOM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S1252. Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
MECOM MUTATED	2	4	1
MECOM WILD-TYPE	41	42	26

'CCDC147 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S1253. Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
CCDC147 MUTATED	2	1	1	0
CCDC147 WILD-TYPE	10	17	10	10

'CCDC147 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0922 (Fisher's exact test), Q value = 1

Table S1254. Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
CCDC147 MUTATED	1	0	2	1	0
CCDC147 WILD-TYPE	11	10	5	6	15

'CCDC147 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0459 (Fisher's exact test), Q value = 1

Table S1255. Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
CCDC147 MUTATED	14	0	0	1	0
CCDC147 WILD-TYPE	142	23	54	6	2

Figure S198. Get High-res Image Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CCDC147 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S1256. Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
CCDC147 MUTATED	3	1	4
CCDC147 WILD-TYPE	40	38	49

'CCDC147 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 1

Table S1257. Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
CCDC147 MUTATED	5	4	2	1	0	1
CCDC147 WILD-TYPE	34	32	35	9	40	23

'CCDC147 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S1258. Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
CCDC147 MUTATED	6	4	2	1
CCDC147 WILD-TYPE	59	60	38	16

'CCDC147 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S1259. Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
CCDC147 MUTATED	6	6	3
CCDC147 WILD-TYPE	73	79	78

'CCDC147 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S1260. Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
CCDC147 MUTATED	2	9	4
CCDC147 WILD-TYPE	57	98	75

'CCDC147 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 1

Table S1261. Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
CCDC147 MUTATED	6	4	4
CCDC147 WILD-TYPE	72	67	87

'CCDC147 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S1262. Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
CCDC147 MUTATED	2	4	1	7
CCDC147 WILD-TYPE	44	53	65	64

'CCDC147 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1263. Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
CCDC147 MUTATED	3	2	1
CCDC147 WILD-TYPE	52	33	25

'CCDC147 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.052 (Fisher's exact test), Q value = 1

Table S1264. Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
CCDC147 MUTATED	3	0	3
CCDC147 WILD-TYPE	40	46	24

'SACS MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0212 (Fisher's exact test), Q value = 1

Table S1265. Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
SACS MUTATED	6	3	1	0
SACS WILD-TYPE	6	15	10	10

Figure S199. Get High-res Image Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SACS MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00149 (Fisher's exact test), Q value = 1

Table S1266. Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
SACS MUTATED	2	1	2	5	0
SACS WILD-TYPE	10	9	5	2	15

Figure S200. Get High-res Image Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SACS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00195 (Fisher's exact test), Q value = 1

Table S1267. Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
SACS MUTATED	22	0	1	3	0
SACS WILD-TYPE	134	23	53	4	2

Figure S201. Get High-res Image Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SACS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S1268. Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
SACS MUTATED	2	2	5
SACS WILD-TYPE	41	37	48

'SACS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0794 (Fisher's exact test), Q value = 1

Table S1269. Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
SACS MUTATED	5	5	4	4	2	1
SACS WILD-TYPE	34	31	33	6	38	23

'SACS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S1270. Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
SACS MUTATED	6	7	7	1
SACS WILD-TYPE	59	57	33	16

'SACS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S1271. Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
SACS MUTATED	7	12	6
SACS WILD-TYPE	72	73	75

'SACS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S1272. Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
SACS MUTATED	4	16	5
SACS WILD-TYPE	55	91	74

'SACS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S1273. Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
SACS MUTATED	12	5	7
SACS WILD-TYPE	66	66	84

'SACS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.373 (Fisher's exact test), Q value = 1

Table S1274. Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
SACS MUTATED	3	5	5	11
SACS WILD-TYPE	43	52	61	60

'SACS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 1

Table S1275. Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
SACS MUTATED	7	1	1
SACS WILD-TYPE	48	34	25

'SACS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S1276. Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
SACS MUTATED	2	4	3
SACS WILD-TYPE	41	42	24

'MUTED MUTATION STATUS' versus 'CN_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S1277. Gene #117: 'MUTED MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
MUTED MUTATED	6	0	0	1	0
MUTED WILD-TYPE	150	23	54	6	2

'MUTED MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S1278. Gene #117: 'MUTED MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
MUTED MUTATED	0	1	2
MUTED WILD-TYPE	43	38	51

'MUTED MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0275 (Fisher's exact test), Q value = 1

Table S1279. Gene #117: 'MUTED MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
MUTED MUTATED	0	2	1	2	0	1
MUTED WILD-TYPE	39	34	36	8	40	23

Figure S202. Get High-res Image Gene #117: 'MUTED MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MUTED MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0794 (Fisher's exact test), Q value = 1

Table S1280. Gene #117: 'MUTED MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
MUTED MUTATED	2	0	3	1
MUTED WILD-TYPE	63	64	37	16

'MUTED MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S1281. Gene #117: 'MUTED MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
MUTED MUTATED	1	3	3
MUTED WILD-TYPE	78	82	78

'MUTED MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S1282. Gene #117: 'MUTED MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
MUTED MUTATED	0	3	4
MUTED WILD-TYPE	59	104	75

'MUTED MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S1283. Gene #117: 'MUTED MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
MUTED MUTATED	1	1	4
MUTED WILD-TYPE	77	70	87

'MUTED MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1284. Gene #117: 'MUTED MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
MUTED MUTATED	1	1	2	2
MUTED WILD-TYPE	45	56	64	69

'MUTED MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S1285. Gene #117: 'MUTED MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
MUTED MUTATED	3	0	0
MUTED WILD-TYPE	52	35	26

'MUTED MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S1286. Gene #117: 'MUTED MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
MUTED MUTATED	2	1	0
MUTED WILD-TYPE	41	45	27

'SLC44A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S1287. Gene #118: 'SLC44A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
SLC44A3 MUTATED	5	0	0	1	0
SLC44A3 WILD-TYPE	151	23	54	6	2

'SLC44A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S1288. Gene #118: 'SLC44A3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
SLC44A3 MUTATED	1	2	1
SLC44A3 WILD-TYPE	42	37	52

'SLC44A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 1

Table S1289. Gene #118: 'SLC44A3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
SLC44A3 MUTATED	2	1	1	1	1	0
SLC44A3 WILD-TYPE	37	35	36	9	39	24

'SLC44A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S1290. Gene #118: 'SLC44A3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
SLC44A3 MUTATED	1	4	1	0
SLC44A3 WILD-TYPE	64	60	39	17

'SLC44A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1291. Gene #118: 'SLC44A3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
SLC44A3 MUTATED	2	2	2
SLC44A3 WILD-TYPE	77	83	79

'SLC44A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S1292. Gene #118: 'SLC44A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
SLC44A3 MUTATED	0	4	2
SLC44A3 WILD-TYPE	59	103	77

'SLC44A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S1293. Gene #118: 'SLC44A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
SLC44A3 MUTATED	3	1	2
SLC44A3 WILD-TYPE	75	70	89

'SLC44A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S1294. Gene #118: 'SLC44A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
SLC44A3 MUTATED	0	1	2	3
SLC44A3 WILD-TYPE	46	56	64	68

'ZNF674 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0646 (Fisher's exact test), Q value = 1

Table S1295. Gene #119: 'ZNF674 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
ZNF674 MUTATED	11	0	1	2	0
ZNF674 WILD-TYPE	145	23	53	5	2

'ZNF674 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S1296. Gene #119: 'ZNF674 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
ZNF674 MUTATED	2	1	3
ZNF674 WILD-TYPE	41	38	50

'ZNF674 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0675 (Fisher's exact test), Q value = 1

Table S1297. Gene #119: 'ZNF674 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
ZNF674 MUTATED	3	5	1	2	1	0
ZNF674 WILD-TYPE	36	31	36	8	39	24

'ZNF674 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S1298. Gene #119: 'ZNF674 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
ZNF674 MUTATED	4	5	3	0
ZNF674 WILD-TYPE	61	59	37	17

'ZNF674 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S1299. Gene #119: 'ZNF674 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
ZNF674 MUTATED	7	5	2
ZNF674 WILD-TYPE	72	80	79

'ZNF674 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 1

Table S1300. Gene #119: 'ZNF674 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
ZNF674 MUTATED	2	10	2
ZNF674 WILD-TYPE	57	97	77

'ZNF674 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 1

Table S1301. Gene #119: 'ZNF674 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
ZNF674 MUTATED	7	4	2
ZNF674 WILD-TYPE	71	67	89

'ZNF674 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S1302. Gene #119: 'ZNF674 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
ZNF674 MUTATED	1	4	1	7
ZNF674 WILD-TYPE	45	53	65	64

'ZNF674 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1303. Gene #119: 'ZNF674 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
ZNF674 MUTATED	2	1	1
ZNF674 WILD-TYPE	53	34	25

'ZNF674 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S1304. Gene #119: 'ZNF674 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
ZNF674 MUTATED	1	1	2
ZNF674 WILD-TYPE	42	45	25

'CCDC144A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S1305. Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
CCDC144A MUTATED	2	2	1	0
CCDC144A WILD-TYPE	10	16	10	10

'CCDC144A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0942 (Fisher's exact test), Q value = 1

Table S1306. Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
CCDC144A MUTATED	2	0	2	1	0
CCDC144A WILD-TYPE	10	10	5	6	15

'CCDC144A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0416 (Fisher's exact test), Q value = 1

Table S1307. Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
CCDC144A MUTATED	15	0	1	2	0
CCDC144A WILD-TYPE	141	23	53	5	2

Figure S203. Get High-res Image Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CCDC144A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S1308. Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
CCDC144A MUTATED	3	1	5
CCDC144A WILD-TYPE	40	38	48

'CCDC144A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 1

Table S1309. Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
CCDC144A MUTATED	4	4	4	2	1	0
CCDC144A WILD-TYPE	35	32	33	8	39	24

'CCDC144A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.67 (Fisher's exact test), Q value = 1

Table S1310. Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
CCDC144A MUTATED	5	6	4	0
CCDC144A WILD-TYPE	60	58	36	17

'CCDC144A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S1311. Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
CCDC144A MUTATED	7	7	4
CCDC144A WILD-TYPE	72	78	77

'CCDC144A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 1

Table S1312. Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
CCDC144A MUTATED	2	12	4
CCDC144A WILD-TYPE	57	95	75

'CCDC144A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S1313. Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
CCDC144A MUTATED	9	4	4
CCDC144A WILD-TYPE	69	67	87

'CCDC144A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 1

Table S1314. Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
CCDC144A MUTATED	2	5	2	8
CCDC144A WILD-TYPE	44	52	64	63

'CCDC144A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S1315. Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
CCDC144A MUTATED	4	1	2
CCDC144A WILD-TYPE	51	34	24

'CCDC144A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S1316. Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
CCDC144A MUTATED	2	2	3
CCDC144A WILD-TYPE	41	44	24

'OR8B8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0311 (Fisher's exact test), Q value = 1

Table S1317. Gene #121: 'OR8B8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
OR8B8 MUTATED	5	0	0	2	0
OR8B8 WILD-TYPE	151	23	54	5	2

Figure S204. Get High-res Image Gene #121: 'OR8B8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'OR8B8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S1318. Gene #121: 'OR8B8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
OR8B8 MUTATED	1	0	2
OR8B8 WILD-TYPE	42	39	51

'OR8B8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S1319. Gene #121: 'OR8B8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
OR8B8 MUTATED	2	3	1	0	0	0
OR8B8 WILD-TYPE	37	33	36	10	40	24

'OR8B8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S1320. Gene #121: 'OR8B8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
OR8B8 MUTATED	2	3	1	0
OR8B8 WILD-TYPE	63	61	39	17

'OR8B8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 1

Table S1321. Gene #121: 'OR8B8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
OR8B8 MUTATED	4	2	1
OR8B8 WILD-TYPE	75	83	80

'OR8B8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S1322. Gene #121: 'OR8B8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
OR8B8 MUTATED	2	4	1
OR8B8 WILD-TYPE	57	103	78

'OR8B8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S1323. Gene #121: 'OR8B8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
OR8B8 MUTATED	3	3	1
OR8B8 WILD-TYPE	75	68	90

'OR8B8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S1324. Gene #121: 'OR8B8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
OR8B8 MUTATED	1	2	0	4
OR8B8 WILD-TYPE	45	55	66	67

'LNX2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S1325. Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
LNX2 MUTATED	2	1	0	0
LNX2 WILD-TYPE	10	17	11	10

'LNX2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S1326. Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
LNX2 MUTATED	1	0	1	1	0
LNX2 WILD-TYPE	11	10	6	6	15

'LNX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0177 (Fisher's exact test), Q value = 1

Table S1327. Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
LNX2 MUTATED	12	0	0	2	0
LNX2 WILD-TYPE	144	23	54	5	2

Figure S205. Get High-res Image Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LNX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00257 (Fisher's exact test), Q value = 1

Table S1328. Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
LNX2 MUTATED	0	0	7
LNX2 WILD-TYPE	43	39	46

Figure S206. Get High-res Image Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'LNX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S1329. Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
LNX2 MUTATED	2	4	2	1	2	1
LNX2 WILD-TYPE	37	32	35	9	38	23

'LNX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1330. Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
LNX2 MUTATED	4	4	3	1
LNX2 WILD-TYPE	61	60	37	16

'LNX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0258 (Fisher's exact test), Q value = 1

Table S1331. Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
LNX2 MUTATED	4	9	1
LNX2 WILD-TYPE	75	76	80

Figure S207. Get High-res Image Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'LNX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0142 (Fisher's exact test), Q value = 1

Table S1332. Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
LNX2 MUTATED	0	11	3
LNX2 WILD-TYPE	59	96	76

Figure S208. Get High-res Image Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LNX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S1333. Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
LNX2 MUTATED	8	3	3
LNX2 WILD-TYPE	70	68	88

'LNX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S1334. Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
LNX2 MUTATED	3	3	1	7
LNX2 WILD-TYPE	43	54	65	64

'LNX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1335. Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
LNX2 MUTATED	2	1	1
LNX2 WILD-TYPE	53	34	25

'LNX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S1336. Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
LNX2 MUTATED	1	1	2
LNX2 WILD-TYPE	42	45	25

'TMEM62 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 1

Table S1337. Gene #123: 'TMEM62 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
TMEM62 MUTATED	8	0	0	1	0
TMEM62 WILD-TYPE	148	23	54	6	2

'TMEM62 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S1338. Gene #123: 'TMEM62 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
TMEM62 MUTATED	1	0	2
TMEM62 WILD-TYPE	42	39	51

'TMEM62 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 1

Table S1339. Gene #123: 'TMEM62 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
TMEM62 MUTATED	3	1	2	0	0	1
TMEM62 WILD-TYPE	36	35	35	10	40	23

'TMEM62 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S1340. Gene #123: 'TMEM62 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
TMEM62 MUTATED	2	3	1	1
TMEM62 WILD-TYPE	63	61	39	16

'TMEM62 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S1341. Gene #123: 'TMEM62 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
TMEM62 MUTATED	2	6	1
TMEM62 WILD-TYPE	77	79	80

'TMEM62 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 1

Table S1342. Gene #123: 'TMEM62 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
TMEM62 MUTATED	0	7	2
TMEM62 WILD-TYPE	59	100	77

'TMEM62 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 1

Table S1343. Gene #123: 'TMEM62 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
TMEM62 MUTATED	3	1	4
TMEM62 WILD-TYPE	75	70	87

'TMEM62 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S1344. Gene #123: 'TMEM62 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
TMEM62 MUTATED	2	0	1	5
TMEM62 WILD-TYPE	44	57	65	66

'TMEM62 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 1

Table S1345. Gene #123: 'TMEM62 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
TMEM62 MUTATED	2	0	1
TMEM62 WILD-TYPE	53	35	25

'TMEM62 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1346. Gene #123: 'TMEM62 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
TMEM62 MUTATED	1	1	1
TMEM62 WILD-TYPE	42	45	26

'ATF7IP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S1347. Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
ATF7IP MUTATED	2	0	1	0
ATF7IP WILD-TYPE	10	18	10	10

'ATF7IP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0234 (Fisher's exact test), Q value = 1

Table S1348. Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
ATF7IP MUTATED	0	0	2	1	0
ATF7IP WILD-TYPE	12	10	5	6	15

Figure S209. Get High-res Image Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ATF7IP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0271 (Fisher's exact test), Q value = 1

Table S1349. Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
ATF7IP MUTATED	13	1	0	2	0
ATF7IP WILD-TYPE	143	22	54	5	2

Figure S210. Get High-res Image Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATF7IP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0934 (Fisher's exact test), Q value = 1

Table S1350. Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
ATF7IP MUTATED	2	1	8
ATF7IP WILD-TYPE	41	38	45

'ATF7IP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S1351. Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
ATF7IP MUTATED	2	5	2	0	3	1
ATF7IP WILD-TYPE	37	31	35	10	37	23

'ATF7IP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.947 (Fisher's exact test), Q value = 1

Table S1352. Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
ATF7IP MUTATED	5	5	2	1
ATF7IP WILD-TYPE	60	59	38	16

'ATF7IP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S1353. Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
ATF7IP MUTATED	7	4	5
ATF7IP WILD-TYPE	72	81	76

'ATF7IP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.599 (Fisher's exact test), Q value = 1

Table S1354. Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
ATF7IP MUTATED	2	8	6
ATF7IP WILD-TYPE	57	99	73

'ATF7IP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1355. Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
ATF7IP MUTATED	6	5	6
ATF7IP WILD-TYPE	72	66	85

'ATF7IP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 1

Table S1356. Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
ATF7IP MUTATED	2	4	2	9
ATF7IP WILD-TYPE	44	53	64	62

'ATF7IP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S1357. Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
ATF7IP MUTATED	3	4	1
ATF7IP WILD-TYPE	52	31	25

'ATF7IP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0266 (Fisher's exact test), Q value = 1

Table S1358. Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
ATF7IP MUTATED	5	0	3
ATF7IP WILD-TYPE	38	46	24

Figure S211. Get High-res Image Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'IL20 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S1359. Gene #125: 'IL20 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
IL20 MUTATED	3	1	0	0
IL20 WILD-TYPE	9	17	11	10

'IL20 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0929 (Fisher's exact test), Q value = 1

Table S1360. Gene #125: 'IL20 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
IL20 MUTATED	1	0	1	2	0
IL20 WILD-TYPE	11	10	6	5	15

'IL20 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S1361. Gene #125: 'IL20 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
IL20 MUTATED	6	0	0	1	0
IL20 WILD-TYPE	150	23	54	6	2

'IL20 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S1362. Gene #125: 'IL20 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
IL20 MUTATED	3	1	0	1	1	0
IL20 WILD-TYPE	36	35	37	9	39	24

'IL20 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.934 (Fisher's exact test), Q value = 1

Table S1363. Gene #125: 'IL20 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
IL20 MUTATED	2	3	1	0
IL20 WILD-TYPE	63	61	39	17

'IL20 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S1364. Gene #125: 'IL20 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
IL20 MUTATED	3	3	1
IL20 WILD-TYPE	76	82	80

'IL20 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00714 (Fisher's exact test), Q value = 1

Table S1365. Gene #125: 'IL20 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
IL20 MUTATED	0	7	0
IL20 WILD-TYPE	59	100	79

Figure S212. Get High-res Image Gene #125: 'IL20 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IL20 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 1

Table S1366. Gene #125: 'IL20 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
IL20 MUTATED	4	1	1
IL20 WILD-TYPE	74	70	90

'IL20 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0558 (Fisher's exact test), Q value = 1

Table S1367. Gene #125: 'IL20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
IL20 MUTATED	2	0	0	4
IL20 WILD-TYPE	44	57	66	67

'C3AR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S1368. Gene #126: 'C3AR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
C3AR1 MUTATED	2	1	0	0
C3AR1 WILD-TYPE	10	17	11	10

'C3AR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S1369. Gene #126: 'C3AR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
C3AR1 MUTATED	1	0	1	1	0
C3AR1 WILD-TYPE	11	10	6	6	15

'C3AR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S1370. Gene #126: 'C3AR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
C3AR1 MUTATED	8	0	0	0	0
C3AR1 WILD-TYPE	148	23	54	7	2

'C3AR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 1

Table S1371. Gene #126: 'C3AR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
C3AR1 MUTATED	1	1	2	2	1	0
C3AR1 WILD-TYPE	38	35	35	8	39	24

'C3AR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 1

Table S1372. Gene #126: 'C3AR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
C3AR1 MUTATED	1	2	4	0
C3AR1 WILD-TYPE	64	62	36	17

'C3AR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S1373. Gene #126: 'C3AR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
C3AR1 MUTATED	1	3	4
C3AR1 WILD-TYPE	78	82	77

'C3AR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S1374. Gene #126: 'C3AR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
C3AR1 MUTATED	0	4	4
C3AR1 WILD-TYPE	59	103	75

'C3AR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S1375. Gene #126: 'C3AR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
C3AR1 MUTATED	2	1	4
C3AR1 WILD-TYPE	76	70	87

'C3AR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S1376. Gene #126: 'C3AR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
C3AR1 MUTATED	1	1	1	4
C3AR1 WILD-TYPE	45	56	65	67

'PKD2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1377. Gene #127: 'PKD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
PKD2 MUTATED	1	1	1	0
PKD2 WILD-TYPE	11	17	10	10

'PKD2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S1378. Gene #127: 'PKD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
PKD2 MUTATED	1	0	1	0	1
PKD2 WILD-TYPE	11	10	6	7	14

'PKD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.088 (Fisher's exact test), Q value = 1

Table S1379. Gene #127: 'PKD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
PKD2 MUTATED	5	2	0	1	0
PKD2 WILD-TYPE	151	21	54	6	2

'PKD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S1380. Gene #127: 'PKD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
PKD2 MUTATED	1	3	1	1	0	0
PKD2 WILD-TYPE	38	33	36	9	40	24

'PKD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S1381. Gene #127: 'PKD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
PKD2 MUTATED	2	2	2	0
PKD2 WILD-TYPE	63	62	38	17

'PKD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1382. Gene #127: 'PKD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
PKD2 MUTATED	2	3	3
PKD2 WILD-TYPE	77	82	78

'PKD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 1

Table S1383. Gene #127: 'PKD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
PKD2 MUTATED	0	5	3
PKD2 WILD-TYPE	59	102	76

'PKD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S1384. Gene #127: 'PKD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
PKD2 MUTATED	3	1	3
PKD2 WILD-TYPE	75	70	88

'PKD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S1385. Gene #127: 'PKD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
PKD2 MUTATED	2	0	2	3
PKD2 WILD-TYPE	44	57	64	68

'BMP5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S1386. Gene #128: 'BMP5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
BMP5 MUTATED	2	2	1	0
BMP5 WILD-TYPE	10	16	10	10

'BMP5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0917 (Fisher's exact test), Q value = 1

Table S1387. Gene #128: 'BMP5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
BMP5 MUTATED	2	0	2	1	0
BMP5 WILD-TYPE	10	10	5	6	15

'BMP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S1388. Gene #128: 'BMP5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
BMP5 MUTATED	9	1	1	2	0
BMP5 WILD-TYPE	147	22	53	5	2

'BMP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1389. Gene #128: 'BMP5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
BMP5 MUTATED	2	1	2
BMP5 WILD-TYPE	41	38	51

'BMP5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S1390. Gene #128: 'BMP5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
BMP5 MUTATED	1	2	2	2	1	0
BMP5 WILD-TYPE	38	34	35	8	39	24

'BMP5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S1391. Gene #128: 'BMP5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
BMP5 MUTATED	2	2	4	0
BMP5 WILD-TYPE	63	62	36	17

'BMP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S1392. Gene #128: 'BMP5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
BMP5 MUTATED	5	4	4
BMP5 WILD-TYPE	74	81	77

'BMP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S1393. Gene #128: 'BMP5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
BMP5 MUTATED	1	8	4
BMP5 WILD-TYPE	58	99	75

'BMP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S1394. Gene #128: 'BMP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
BMP5 MUTATED	5	4	3
BMP5 WILD-TYPE	73	67	88

'BMP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 1

Table S1395. Gene #128: 'BMP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
BMP5 MUTATED	1	4	2	5
BMP5 WILD-TYPE	45	53	64	66

'BMP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S1396. Gene #128: 'BMP5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
BMP5 MUTATED	2	2	0
BMP5 WILD-TYPE	53	33	26

'BMP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.359 (Fisher's exact test), Q value = 1

Table S1397. Gene #128: 'BMP5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
BMP5 MUTATED	3	1	0
BMP5 WILD-TYPE	40	45	27

'OR52I2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 1

Table S1398. Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
OR52I2 MUTATED	1	2	0	0
OR52I2 WILD-TYPE	11	16	11	10

'OR52I2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.533 (Fisher's exact test), Q value = 1

Table S1399. Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
OR52I2 MUTATED	1	1	0	1	0
OR52I2 WILD-TYPE	11	9	7	6	15

'OR52I2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 1

Table S1400. Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
OR52I2 MUTATED	6	0	1	1	0
OR52I2 WILD-TYPE	150	23	53	6	2

'OR52I2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0384 (Fisher's exact test), Q value = 1

Table S1401. Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
OR52I2 MUTATED	0	0	4
OR52I2 WILD-TYPE	43	39	49

Figure S213. Get High-res Image Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'OR52I2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S1402. Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
OR52I2 MUTATED	1	3	1	0	1	0
OR52I2 WILD-TYPE	38	33	36	10	39	24

'OR52I2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S1403. Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
OR52I2 MUTATED	4	1	1	0
OR52I2 WILD-TYPE	61	63	39	17

'OR52I2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 1

Table S1404. Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
OR52I2 MUTATED	5	1	2
OR52I2 WILD-TYPE	74	84	79

'OR52I2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S1405. Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
OR52I2 MUTATED	1	5	2
OR52I2 WILD-TYPE	58	102	77

'OR52I2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S1406. Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
OR52I2 MUTATED	2	3	2
OR52I2 WILD-TYPE	76	68	89

'OR52I2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S1407. Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
OR52I2 MUTATED	0	2	1	4
OR52I2 WILD-TYPE	46	55	65	67

'OR52I2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1408. Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
OR52I2 MUTATED	2	1	0
OR52I2 WILD-TYPE	53	34	26

'OR52I2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1409. Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
OR52I2 MUTATED	1	1	1
OR52I2 WILD-TYPE	42	45	26

'C1ORF100 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S1410. Gene #130: 'C1ORF100 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
C1ORF100 MUTATED	2	1	0	0
C1ORF100 WILD-TYPE	10	17	11	10

'C1ORF100 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 1

Table S1411. Gene #130: 'C1ORF100 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
C1ORF100 MUTATED	1	0	1	1	0
C1ORF100 WILD-TYPE	11	10	6	6	15

'C1ORF100 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00305 (Fisher's exact test), Q value = 1

Table S1412. Gene #130: 'C1ORF100 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
C1ORF100 MUTATED	6	0	0	3	0
C1ORF100 WILD-TYPE	150	23	54	4	2

Figure S214. Get High-res Image Gene #130: 'C1ORF100 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C1ORF100 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1413. Gene #130: 'C1ORF100 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
C1ORF100 MUTATED	1	1	1
C1ORF100 WILD-TYPE	42	38	52

'C1ORF100 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S1414. Gene #130: 'C1ORF100 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
C1ORF100 MUTATED	2	3	1	0	1	0
C1ORF100 WILD-TYPE	37	33	36	10	39	24

'C1ORF100 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S1415. Gene #130: 'C1ORF100 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
C1ORF100 MUTATED	1	5	1	0
C1ORF100 WILD-TYPE	64	59	39	17

'C1ORF100 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S1416. Gene #130: 'C1ORF100 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
C1ORF100 MUTATED	3	5	1
C1ORF100 WILD-TYPE	76	80	80

'C1ORF100 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S1417. Gene #130: 'C1ORF100 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
C1ORF100 MUTATED	1	7	1
C1ORF100 WILD-TYPE	58	100	78

'C1ORF100 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S1418. Gene #130: 'C1ORF100 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
C1ORF100 MUTATED	6	2	1
C1ORF100 WILD-TYPE	72	69	90

'C1ORF100 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.413 (Fisher's exact test), Q value = 1

Table S1419. Gene #130: 'C1ORF100 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
C1ORF100 MUTATED	1	2	1	5
C1ORF100 WILD-TYPE	45	55	65	66

'CCDC160 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S1420. Gene #131: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
CCDC160 MUTATED	1	2	0	0
CCDC160 WILD-TYPE	11	16	11	10

'CCDC160 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S1421. Gene #131: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
CCDC160 MUTATED	2	0	0	1	0
CCDC160 WILD-TYPE	10	10	7	6	15

'CCDC160 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S1422. Gene #131: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
CCDC160 MUTATED	10	0	0	1	0
CCDC160 WILD-TYPE	146	23	54	6	2

'CCDC160 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1423. Gene #131: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
CCDC160 MUTATED	1	1	2
CCDC160 WILD-TYPE	42	38	51

'CCDC160 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S1424. Gene #131: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
CCDC160 MUTATED	2	3	1	1	2	1
CCDC160 WILD-TYPE	37	33	36	9	38	23

'CCDC160 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S1425. Gene #131: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
CCDC160 MUTATED	4	2	3	1
CCDC160 WILD-TYPE	61	62	37	16

'CCDC160 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S1426. Gene #131: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
CCDC160 MUTATED	4	5	2
CCDC160 WILD-TYPE	75	80	79

'CCDC160 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S1427. Gene #131: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
CCDC160 MUTATED	1	7	3
CCDC160 WILD-TYPE	58	100	76

'CCDC160 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S1428. Gene #131: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
CCDC160 MUTATED	4	3	3
CCDC160 WILD-TYPE	74	68	88

'CCDC160 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S1429. Gene #131: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
CCDC160 MUTATED	2	2	1	5
CCDC160 WILD-TYPE	44	55	65	66

'CCDC160 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S1430. Gene #131: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
CCDC160 MUTATED	3	0	1
CCDC160 WILD-TYPE	52	35	25

'CCDC160 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S1431. Gene #131: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
CCDC160 MUTATED	2	1	1
CCDC160 WILD-TYPE	41	45	26

'NAA15 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 1

Table S1432. Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
NAA15 MUTATED	2	2	0	0
NAA15 WILD-TYPE	10	16	11	10

'NAA15 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S1433. Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
NAA15 MUTATED	2	0	1	1	0
NAA15 WILD-TYPE	10	10	6	6	15

'NAA15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0645 (Fisher's exact test), Q value = 1

Table S1434. Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
NAA15 MUTATED	11	0	1	2	0
NAA15 WILD-TYPE	145	23	53	5	2

'NAA15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.1 (Fisher's exact test), Q value = 1

Table S1435. Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
NAA15 MUTATED	5	1	1
NAA15 WILD-TYPE	38	38	52

'NAA15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 1

Table S1436. Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
NAA15 MUTATED	5	3	1	2	2	0
NAA15 WILD-TYPE	34	33	36	8	38	24

'NAA15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S1437. Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
NAA15 MUTATED	3	7	3	0
NAA15 WILD-TYPE	62	57	37	17

'NAA15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 1

Table S1438. Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
NAA15 MUTATED	8	4	2
NAA15 WILD-TYPE	71	81	79

'NAA15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 1

Table S1439. Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
NAA15 MUTATED	2	10	2
NAA15 WILD-TYPE	57	97	77

'NAA15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S1440. Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
NAA15 MUTATED	6	5	2
NAA15 WILD-TYPE	72	66	89

'NAA15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S1441. Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
NAA15 MUTATED	1	5	2	5
NAA15 WILD-TYPE	45	52	64	66

'NAA15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S1442. Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
NAA15 MUTATED	1	2	3
NAA15 WILD-TYPE	54	33	23

'NAA15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0392 (Fisher's exact test), Q value = 1

Table S1443. Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
NAA15 MUTATED	1	1	4
NAA15 WILD-TYPE	42	45	23

Figure S215. Get High-res Image Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RNF31 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S1444. Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
RNF31 MUTATED	3	2	1	0
RNF31 WILD-TYPE	9	16	10	10

'RNF31 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.05 (Fisher's exact test), Q value = 1

Table S1445. Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
RNF31 MUTATED	2	0	2	2	0
RNF31 WILD-TYPE	10	10	5	5	15

'RNF31 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0374 (Fisher's exact test), Q value = 1

Table S1446. Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
RNF31 MUTATED	11	1	2	3	0
RNF31 WILD-TYPE	145	22	52	4	2

Figure S216. Get High-res Image Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RNF31 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S1447. Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
RNF31 MUTATED	4	1	3
RNF31 WILD-TYPE	39	38	50

'RNF31 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0729 (Fisher's exact test), Q value = 1

Table S1448. Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
RNF31 MUTATED	4	5	0	1	2	0
RNF31 WILD-TYPE	35	31	37	9	38	24

'RNF31 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.297 (Fisher's exact test), Q value = 1

Table S1449. Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
RNF31 MUTATED	4	7	1	0
RNF31 WILD-TYPE	61	57	39	17

'RNF31 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0788 (Fisher's exact test), Q value = 1

Table S1450. Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
RNF31 MUTATED	9	6	2
RNF31 WILD-TYPE	70	79	79

'RNF31 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0641 (Fisher's exact test), Q value = 1

Table S1451. Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
RNF31 MUTATED	3	12	2
RNF31 WILD-TYPE	56	95	77

'RNF31 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0147 (Fisher's exact test), Q value = 1

Table S1452. Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
RNF31 MUTATED	8	7	1
RNF31 WILD-TYPE	70	64	90

Figure S217. Get High-res Image Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RNF31 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.067 (Fisher's exact test), Q value = 1

Table S1453. Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
RNF31 MUTATED	3	3	1	9
RNF31 WILD-TYPE	43	54	65	62

'RNF31 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S1454. Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
RNF31 MUTATED	1	4	2
RNF31 WILD-TYPE	54	31	24

'RNF31 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0959 (Fisher's exact test), Q value = 1

Table S1455. Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
RNF31 MUTATED	2	1	4
RNF31 WILD-TYPE	41	45	23

'NFE2L3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S1456. Gene #134: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
NFE2L3 MUTATED	8	0	3	1	0
NFE2L3 WILD-TYPE	148	23	51	6	2

'NFE2L3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0333 (Fisher's exact test), Q value = 1

Table S1457. Gene #134: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
NFE2L3 MUTATED	6	0	3
NFE2L3 WILD-TYPE	37	39	50

Figure S218. Get High-res Image Gene #134: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'NFE2L3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S1458. Gene #134: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
NFE2L3 MUTATED	5	1	1	0	1	1
NFE2L3 WILD-TYPE	34	35	36	10	39	23

'NFE2L3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S1459. Gene #134: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
NFE2L3 MUTATED	3	4	1	1
NFE2L3 WILD-TYPE	62	60	39	16

'NFE2L3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0436 (Fisher's exact test), Q value = 1

Table S1460. Gene #134: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
NFE2L3 MUTATED	8	2	2
NFE2L3 WILD-TYPE	71	83	79

Figure S219. Get High-res Image Gene #134: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NFE2L3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S1461. Gene #134: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
NFE2L3 MUTATED	5	4	3
NFE2L3 WILD-TYPE	54	103	76

'NFE2L3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S1462. Gene #134: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
NFE2L3 MUTATED	2	6	3
NFE2L3 WILD-TYPE	76	65	88

'NFE2L3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S1463. Gene #134: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
NFE2L3 MUTATED	1	5	1	4
NFE2L3 WILD-TYPE	45	52	65	67

'NFE2L3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S1464. Gene #134: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
NFE2L3 MUTATED	3	4	1
NFE2L3 WILD-TYPE	52	31	25

'NFE2L3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 1

Table S1465. Gene #134: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
NFE2L3 MUTATED	5	1	2
NFE2L3 WILD-TYPE	38	45	25

'ZKSCAN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S1466. Gene #135: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
ZKSCAN1 MUTATED	7	0	0	0	0
ZKSCAN1 WILD-TYPE	149	23	54	7	2

'ZKSCAN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S1467. Gene #135: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
ZKSCAN1 MUTATED	2	0	3
ZKSCAN1 WILD-TYPE	41	39	50

'ZKSCAN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 1

Table S1468. Gene #135: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
ZKSCAN1 MUTATED	3	0	2	1	0	1
ZKSCAN1 WILD-TYPE	36	36	35	9	40	23

'ZKSCAN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S1469. Gene #135: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
ZKSCAN1 MUTATED	2	1	3	1
ZKSCAN1 WILD-TYPE	63	63	37	16

'ZKSCAN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S1470. Gene #135: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
ZKSCAN1 MUTATED	2	4	1
ZKSCAN1 WILD-TYPE	77	81	80

'ZKSCAN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1471. Gene #135: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
ZKSCAN1 MUTATED	2	3	2
ZKSCAN1 WILD-TYPE	57	104	77

'ZKSCAN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S1472. Gene #135: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
ZKSCAN1 MUTATED	2	3	2
ZKSCAN1 WILD-TYPE	76	68	89

'ZKSCAN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S1473. Gene #135: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
ZKSCAN1 MUTATED	1	4	1	1
ZKSCAN1 WILD-TYPE	45	53	65	70

'ZKSCAN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S1474. Gene #135: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
ZKSCAN1 MUTATED	2	2	1
ZKSCAN1 WILD-TYPE	53	33	25

'ZKSCAN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S1475. Gene #135: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
ZKSCAN1 MUTATED	2	1	2
ZKSCAN1 WILD-TYPE	41	45	25

'CDKL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S1476. Gene #136: 'CDKL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
CDKL1 MUTATED	6	0	0	1	0
CDKL1 WILD-TYPE	150	23	54	6	2

'CDKL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S1477. Gene #136: 'CDKL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
CDKL1 MUTATED	1	2	1
CDKL1 WILD-TYPE	42	37	52

'CDKL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S1478. Gene #136: 'CDKL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
CDKL1 MUTATED	3	1	2	0	0	0
CDKL1 WILD-TYPE	36	35	35	10	40	24

'CDKL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S1479. Gene #136: 'CDKL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
CDKL1 MUTATED	2	2	2	0
CDKL1 WILD-TYPE	63	62	38	17

'CDKL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S1480. Gene #136: 'CDKL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
CDKL1 MUTATED	3	2	2
CDKL1 WILD-TYPE	76	83	79

'CDKL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S1481. Gene #136: 'CDKL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
CDKL1 MUTATED	0	5	2
CDKL1 WILD-TYPE	59	102	77

'CDKL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S1482. Gene #136: 'CDKL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
CDKL1 MUTATED	3	1	2
CDKL1 WILD-TYPE	75	70	89

'CDKL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S1483. Gene #136: 'CDKL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
CDKL1 MUTATED	2	0	1	3
CDKL1 WILD-TYPE	44	57	65	68

'CDKL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S1484. Gene #136: 'CDKL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
CDKL1 MUTATED	3	0	1
CDKL1 WILD-TYPE	52	35	25

'CDKL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S1485. Gene #136: 'CDKL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
CDKL1 MUTATED	2	1	1
CDKL1 WILD-TYPE	41	45	26

'ERBB3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0947 (Fisher's exact test), Q value = 1

Table S1486. Gene #137: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
ERBB3 MUTATED	13	1	1	2	0
ERBB3 WILD-TYPE	143	22	53	5	2

'ERBB3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S1487. Gene #137: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
ERBB3 MUTATED	2	3	6
ERBB3 WILD-TYPE	41	36	47

'ERBB3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S1488. Gene #137: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
ERBB3 MUTATED	2	1	3	2	4	1
ERBB3 WILD-TYPE	37	35	34	8	36	23

'ERBB3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S1489. Gene #137: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
ERBB3 MUTATED	4	4	4	1
ERBB3 WILD-TYPE	61	60	36	16

'ERBB3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S1490. Gene #137: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
ERBB3 MUTATED	5	9	3
ERBB3 WILD-TYPE	74	76	78

'ERBB3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S1491. Gene #137: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
ERBB3 MUTATED	2	11	4
ERBB3 WILD-TYPE	57	96	75

'ERBB3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S1492. Gene #137: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
ERBB3 MUTATED	5	6	6
ERBB3 WILD-TYPE	73	65	85

'ERBB3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S1493. Gene #137: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
ERBB3 MUTATED	3	5	3	6
ERBB3 WILD-TYPE	43	52	63	65

'ERBB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S1494. Gene #137: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
ERBB3 MUTATED	3	2	3
ERBB3 WILD-TYPE	52	33	23

'ERBB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1495. Gene #137: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
ERBB3 MUTATED	3	3	2
ERBB3 WILD-TYPE	40	43	25

'SELP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S1496. Gene #138: 'SELP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
SELP MUTATED	2	1	0	0
SELP WILD-TYPE	10	17	11	10

'SELP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S1497. Gene #138: 'SELP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
SELP MUTATED	1	0	1	1	0
SELP WILD-TYPE	11	10	6	6	15

'SELP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 1

Table S1498. Gene #138: 'SELP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
SELP MUTATED	7	1	0	1	0
SELP WILD-TYPE	149	22	54	6	2

'SELP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S1499. Gene #138: 'SELP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
SELP MUTATED	3	2	0	1	1	0
SELP WILD-TYPE	36	34	37	9	39	24

'SELP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1500. Gene #138: 'SELP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
SELP MUTATED	3	3	1	0
SELP WILD-TYPE	62	61	39	17

'SELP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S1501. Gene #138: 'SELP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
SELP MUTATED	4	4	1
SELP WILD-TYPE	75	81	80

'SELP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S1502. Gene #138: 'SELP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
SELP MUTATED	2	6	1
SELP WILD-TYPE	57	101	78

'SELP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 1

Table S1503. Gene #138: 'SELP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
SELP MUTATED	3	4	1
SELP WILD-TYPE	75	67	90

'SELP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.664 (Fisher's exact test), Q value = 1

Table S1504. Gene #138: 'SELP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
SELP MUTATED	1	2	1	4
SELP WILD-TYPE	45	55	65	67

'PPIG MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S1505. Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
PPIG MUTATED	3	2	0	0
PPIG WILD-TYPE	9	16	11	10

'PPIG MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0916 (Fisher's exact test), Q value = 1

Table S1506. Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
PPIG MUTATED	2	0	1	2	0
PPIG WILD-TYPE	10	10	6	5	15

'PPIG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.046 (Fisher's exact test), Q value = 1

Table S1507. Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
PPIG MUTATED	16	0	0	0	0
PPIG WILD-TYPE	140	23	54	7	2

Figure S220. Get High-res Image Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PPIG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1508. Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
PPIG MUTATED	3	2	4
PPIG WILD-TYPE	40	37	49

'PPIG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S1509. Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
PPIG MUTATED	4	3	5	0	2	1
PPIG WILD-TYPE	35	33	32	10	38	23

'PPIG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S1510. Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
PPIG MUTATED	5	5	4	1
PPIG WILD-TYPE	60	59	36	16

'PPIG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 1

Table S1511. Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
PPIG MUTATED	6	8	2
PPIG WILD-TYPE	73	77	79

'PPIG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 1

Table S1512. Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
PPIG MUTATED	2	11	3
PPIG WILD-TYPE	57	96	76

'PPIG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S1513. Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
PPIG MUTATED	8	3	4
PPIG WILD-TYPE	70	68	87

'PPIG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S1514. Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
PPIG MUTATED	2	5	2	6
PPIG WILD-TYPE	44	52	64	65

'PPIG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1515. Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
PPIG MUTATED	4	3	2
PPIG WILD-TYPE	51	32	24

'PPIG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S1516. Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
PPIG MUTATED	4	1	4
PPIG WILD-TYPE	39	45	23

'GPRASP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S1517. Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
GPRASP1 MUTATED	3	1	1	0
GPRASP1 WILD-TYPE	9	17	10	10

'GPRASP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0448 (Fisher's exact test), Q value = 1

Table S1518. Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
GPRASP1 MUTATED	1	0	2	2	0
GPRASP1 WILD-TYPE	11	10	5	5	15

Figure S221. Get High-res Image Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'GPRASP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0526 (Fisher's exact test), Q value = 1

Table S1519. Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
GPRASP1 MUTATED	19	0	1	1	0
GPRASP1 WILD-TYPE	137	23	53	6	2

'GPRASP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S1520. Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
GPRASP1 MUTATED	3	2	6
GPRASP1 WILD-TYPE	40	37	47

'GPRASP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S1521. Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
GPRASP1 MUTATED	7	4	2	1	2	1
GPRASP1 WILD-TYPE	32	32	35	9	38	23

'GPRASP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1522. Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
GPRASP1 MUTATED	6	6	4	1
GPRASP1 WILD-TYPE	59	58	36	16

'GPRASP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1523. Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
GPRASP1 MUTATED	6	7	7
GPRASP1 WILD-TYPE	73	78	74

'GPRASP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 1

Table S1524. Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
GPRASP1 MUTATED	2	10	8
GPRASP1 WILD-TYPE	57	97	71

'GPRASP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S1525. Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
GPRASP1 MUTATED	9	4	7
GPRASP1 WILD-TYPE	69	67	84

'GPRASP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.934 (Fisher's exact test), Q value = 1

Table S1526. Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
GPRASP1 MUTATED	3	4	6	7
GPRASP1 WILD-TYPE	43	53	60	64

'GPRASP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S1527. Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
GPRASP1 MUTATED	5	2	1
GPRASP1 WILD-TYPE	50	33	25

'GPRASP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1528. Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
GPRASP1 MUTATED	3	3	2
GPRASP1 WILD-TYPE	40	43	25

'REV3L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S1529. Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
REV3L MUTATED	2	1	0	0
REV3L WILD-TYPE	10	17	11	10

'REV3L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 1

Table S1530. Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
REV3L MUTATED	1	0	1	1	0
REV3L WILD-TYPE	11	10	6	6	15

'REV3L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0116 (Fisher's exact test), Q value = 1

Table S1531. Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
REV3L MUTATED	19	0	0	1	0
REV3L WILD-TYPE	137	23	54	6	2

Figure S222. Get High-res Image Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'REV3L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S1532. Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
REV3L MUTATED	2	4	7
REV3L WILD-TYPE	41	35	46

'REV3L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S1533. Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
REV3L MUTATED	5	4	3	2	2	1
REV3L WILD-TYPE	34	32	34	8	38	23

'REV3L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1534. Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
REV3L MUTATED	6	6	4	1
REV3L WILD-TYPE	59	58	36	16

'REV3L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S1535. Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
REV3L MUTATED	6	9	5
REV3L WILD-TYPE	73	76	76

'REV3L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0439 (Fisher's exact test), Q value = 1

Table S1536. Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
REV3L MUTATED	1	13	6
REV3L WILD-TYPE	58	94	73

Figure S223. Get High-res Image Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'REV3L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S1537. Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
REV3L MUTATED	8	4	7
REV3L WILD-TYPE	70	67	84

'REV3L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0548 (Fisher's exact test), Q value = 1

Table S1538. Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
REV3L MUTATED	3	3	2	11
REV3L WILD-TYPE	43	54	64	60

'REV3L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S1539. Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
REV3L MUTATED	6	2	3
REV3L WILD-TYPE	49	33	23

'REV3L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S1540. Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
REV3L MUTATED	5	2	4
REV3L WILD-TYPE	38	44	23

'CTNNA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S1541. Gene #142: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
CTNNA1 MUTATED	11	0	1	1	0
CTNNA1 WILD-TYPE	145	23	53	6	2

'CTNNA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 1

Table S1542. Gene #142: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
CTNNA1 MUTATED	3	1	2
CTNNA1 WILD-TYPE	40	38	51

'CTNNA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S1543. Gene #142: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
CTNNA1 MUTATED	4	1	1	2	1	1
CTNNA1 WILD-TYPE	35	35	36	8	39	23

'CTNNA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S1544. Gene #142: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
CTNNA1 MUTATED	3	3	3	1
CTNNA1 WILD-TYPE	62	61	37	16

'CTNNA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S1545. Gene #142: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
CTNNA1 MUTATED	5	6	2
CTNNA1 WILD-TYPE	74	79	79

'CTNNA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S1546. Gene #142: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
CTNNA1 MUTATED	2	8	3
CTNNA1 WILD-TYPE	57	99	76

'CTNNA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S1547. Gene #142: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
CTNNA1 MUTATED	3	4	5
CTNNA1 WILD-TYPE	75	67	86

'CTNNA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S1548. Gene #142: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
CTNNA1 MUTATED	2	4	2	4
CTNNA1 WILD-TYPE	44	53	64	67

'CTNNA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S1549. Gene #142: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
CTNNA1 MUTATED	2	2	2
CTNNA1 WILD-TYPE	53	33	24

'CTNNA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S1550. Gene #142: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
CTNNA1 MUTATED	2	2	2
CTNNA1 WILD-TYPE	41	44	25

'MRPL47 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S1551. Gene #143: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
MRPL47 MUTATED	1	2	0	0
MRPL47 WILD-TYPE	11	16	11	10

'MRPL47 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.533 (Fisher's exact test), Q value = 1

Table S1552. Gene #143: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
MRPL47 MUTATED	1	1	1	0	0
MRPL47 WILD-TYPE	11	9	6	7	15

'MRPL47 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1553. Gene #143: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
MRPL47 MUTATED	5	0	1	0	0
MRPL47 WILD-TYPE	151	23	53	7	2

'MRPL47 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S1554. Gene #143: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
MRPL47 MUTATED	1	0	2
MRPL47 WILD-TYPE	42	39	51

'MRPL47 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S1555. Gene #143: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
MRPL47 MUTATED	3	1	1	0	0	1
MRPL47 WILD-TYPE	36	35	36	10	40	23

'MRPL47 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S1556. Gene #143: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
MRPL47 MUTATED	2	2	1	1
MRPL47 WILD-TYPE	63	62	39	16

'MRPL47 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 1

Table S1557. Gene #143: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
MRPL47 MUTATED	3	2	1
MRPL47 WILD-TYPE	76	83	80

'MRPL47 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S1558. Gene #143: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
MRPL47 MUTATED	2	2	2
MRPL47 WILD-TYPE	57	105	77

'MRPL47 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1559. Gene #143: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
MRPL47 MUTATED	1	1	2
MRPL47 WILD-TYPE	77	70	89

'MRPL47 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S1560. Gene #143: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
MRPL47 MUTATED	2	1	0	1
MRPL47 WILD-TYPE	44	56	66	70

'MRPL47 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1561. Gene #143: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
MRPL47 MUTATED	2	1	0
MRPL47 WILD-TYPE	53	34	26

'MRPL47 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S1562. Gene #143: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
MRPL47 MUTATED	2	0	1
MRPL47 WILD-TYPE	41	46	26

'DEPDC1B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S1563. Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
DEPDC1B MUTATED	1	2	0	0
DEPDC1B WILD-TYPE	11	16	11	10

'DEPDC1B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S1564. Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
DEPDC1B MUTATED	2	0	0	1	0
DEPDC1B WILD-TYPE	10	10	7	6	15

'DEPDC1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S1565. Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
DEPDC1B MUTATED	11	0	0	0	0
DEPDC1B WILD-TYPE	145	23	54	7	2

'DEPDC1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S1566. Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
DEPDC1B MUTATED	3	1	2
DEPDC1B WILD-TYPE	40	38	51

'DEPDC1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0222 (Fisher's exact test), Q value = 1

Table S1567. Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
DEPDC1B MUTATED	3	2	0	3	1	2
DEPDC1B WILD-TYPE	36	34	37	7	39	22

Figure S224. Get High-res Image Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'DEPDC1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.408 (Fisher's exact test), Q value = 1

Table S1568. Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
DEPDC1B MUTATED	4	2	3	2
DEPDC1B WILD-TYPE	61	62	37	15

'DEPDC1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S1569. Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
DEPDC1B MUTATED	6	3	2
DEPDC1B WILD-TYPE	73	82	79

'DEPDC1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1570. Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
DEPDC1B MUTATED	3	5	3
DEPDC1B WILD-TYPE	56	102	76

'DEPDC1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S1571. Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
DEPDC1B MUTATED	3	4	3
DEPDC1B WILD-TYPE	75	67	88

'DEPDC1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S1572. Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
DEPDC1B MUTATED	1	4	2	3
DEPDC1B WILD-TYPE	45	53	64	68

'DEPDC1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 1

Table S1573. Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
DEPDC1B MUTATED	2	3	1
DEPDC1B WILD-TYPE	53	32	25

'DEPDC1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.57 (Fisher's exact test), Q value = 1

Table S1574. Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
DEPDC1B MUTATED	3	1	2
DEPDC1B WILD-TYPE	40	45	25

'CASP8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S1575. Gene #145: 'CASP8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
CASP8 MUTATED	2	1	0	0
CASP8 WILD-TYPE	10	17	11	10

'CASP8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0787 (Fisher's exact test), Q value = 1

Table S1576. Gene #145: 'CASP8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
CASP8 MUTATED	1	0	2	0	0
CASP8 WILD-TYPE	11	10	5	7	15

'CASP8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0507 (Fisher's exact test), Q value = 1

Table S1577. Gene #145: 'CASP8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
CASP8 MUTATED	14	0	1	2	0
CASP8 WILD-TYPE	142	23	53	5	2

'CASP8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S1578. Gene #145: 'CASP8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
CASP8 MUTATED	2	1	6
CASP8 WILD-TYPE	41	38	47

'CASP8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S1579. Gene #145: 'CASP8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
CASP8 MUTATED	3	6	2	2	1	1
CASP8 WILD-TYPE	36	30	35	8	39	23

'CASP8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1580. Gene #145: 'CASP8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
CASP8 MUTATED	6	5	3	1
CASP8 WILD-TYPE	59	59	37	16

'CASP8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S1581. Gene #145: 'CASP8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
CASP8 MUTATED	7	6	4
CASP8 WILD-TYPE	72	79	77

'CASP8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S1582. Gene #145: 'CASP8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
CASP8 MUTATED	3	10	4
CASP8 WILD-TYPE	56	97	75

'CASP8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S1583. Gene #145: 'CASP8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
CASP8 MUTATED	4	7	5
CASP8 WILD-TYPE	74	64	86

'CASP8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S1584. Gene #145: 'CASP8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
CASP8 MUTATED	2	4	3	7
CASP8 WILD-TYPE	44	53	63	64

'CASP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S1585. Gene #145: 'CASP8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
CASP8 MUTATED	4	3	0
CASP8 WILD-TYPE	51	32	26

'CASP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.536 (Fisher's exact test), Q value = 1

Table S1586. Gene #145: 'CASP8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
CASP8 MUTATED	2	2	3
CASP8 WILD-TYPE	41	44	24

'CACNB4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00387 (Fisher's exact test), Q value = 1

Table S1587. Gene #146: 'CACNB4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
CACNB4 MUTATED	7	0	0	2	1
CACNB4 WILD-TYPE	149	23	54	5	1

Figure S225. Get High-res Image Gene #146: 'CACNB4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CACNB4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S1588. Gene #146: 'CACNB4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
CACNB4 MUTATED	1	2	4
CACNB4 WILD-TYPE	42	37	49

'CACNB4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S1589. Gene #146: 'CACNB4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
CACNB4 MUTATED	1	3	2	1	1	1
CACNB4 WILD-TYPE	38	33	35	9	39	23

'CACNB4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1590. Gene #146: 'CACNB4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
CACNB4 MUTATED	3	3	2	1
CACNB4 WILD-TYPE	62	61	38	16

'CACNB4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S1591. Gene #146: 'CACNB4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
CACNB4 MUTATED	5	3	2
CACNB4 WILD-TYPE	74	82	79

'CACNB4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S1592. Gene #146: 'CACNB4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
CACNB4 MUTATED	1	6	3
CACNB4 WILD-TYPE	58	101	76

'CACNB4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S1593. Gene #146: 'CACNB4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
CACNB4 MUTATED	5	2	3
CACNB4 WILD-TYPE	73	69	88

'CACNB4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S1594. Gene #146: 'CACNB4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
CACNB4 MUTATED	1	2	1	6
CACNB4 WILD-TYPE	45	55	65	65

'CACNB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1595. Gene #146: 'CACNB4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
CACNB4 MUTATED	2	1	1
CACNB4 WILD-TYPE	53	34	25

'CACNB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S1596. Gene #146: 'CACNB4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
CACNB4 MUTATED	3	0	1
CACNB4 WILD-TYPE	40	46	26

'BHLHB9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 1

Table S1597. Gene #147: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
BHLHB9 MUTATED	7	0	0	1	0
BHLHB9 WILD-TYPE	149	23	54	6	2

'BHLHB9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1598. Gene #147: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
BHLHB9 MUTATED	1	1	2
BHLHB9 WILD-TYPE	42	38	51

'BHLHB9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.961 (Fisher's exact test), Q value = 1

Table S1599. Gene #147: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
BHLHB9 MUTATED	1	2	1	0	2	1
BHLHB9 WILD-TYPE	38	34	36	10	38	23

'BHLHB9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S1600. Gene #147: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
BHLHB9 MUTATED	3	3	0	1
BHLHB9 WILD-TYPE	62	61	40	16

'BHLHB9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S1601. Gene #147: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
BHLHB9 MUTATED	4	4	0
BHLHB9 WILD-TYPE	75	81	81

'BHLHB9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S1602. Gene #147: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
BHLHB9 MUTATED	2	5	1
BHLHB9 WILD-TYPE	57	102	78

'BHLHB9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S1603. Gene #147: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
BHLHB9 MUTATED	3	4	1
BHLHB9 WILD-TYPE	75	67	90

'BHLHB9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S1604. Gene #147: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
BHLHB9 MUTATED	1	3	0	4
BHLHB9 WILD-TYPE	45	54	66	67

'BHLHB9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S1605. Gene #147: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
BHLHB9 MUTATED	1	2	0
BHLHB9 WILD-TYPE	54	33	26

'BHLHB9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S1606. Gene #147: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
BHLHB9 MUTATED	2	0	1
BHLHB9 WILD-TYPE	41	46	26

'C22ORF25 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S1607. Gene #148: 'C22ORF25 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
C22ORF25 MUTATED	6	0	0	0	0
C22ORF25 WILD-TYPE	150	23	54	7	2

'C22ORF25 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1608. Gene #148: 'C22ORF25 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
C22ORF25 MUTATED	1	1	1	0	1	1
C22ORF25 WILD-TYPE	38	35	36	10	39	23

'C22ORF25 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S1609. Gene #148: 'C22ORF25 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
C22ORF25 MUTATED	1	2	1	1
C22ORF25 WILD-TYPE	64	62	39	16

'C22ORF25 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0407 (Fisher's exact test), Q value = 1

Table S1610. Gene #148: 'C22ORF25 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
C22ORF25 MUTATED	1	5	0
C22ORF25 WILD-TYPE	78	80	81

Figure S226. Get High-res Image Gene #148: 'C22ORF25 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'C22ORF25 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0946 (Fisher's exact test), Q value = 1

Table S1611. Gene #148: 'C22ORF25 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
C22ORF25 MUTATED	1	5	0
C22ORF25 WILD-TYPE	58	102	79

'C22ORF25 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0676 (Fisher's exact test), Q value = 1

Table S1612. Gene #148: 'C22ORF25 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
C22ORF25 MUTATED	4	2	0
C22ORF25 WILD-TYPE	74	69	91

'C22ORF25 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S1613. Gene #148: 'C22ORF25 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
C22ORF25 MUTATED	1	2	0	3
C22ORF25 WILD-TYPE	45	55	66	68

'GALNT7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S1614. Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
GALNT7 MUTATED	2	1	1	0
GALNT7 WILD-TYPE	10	17	10	10

'GALNT7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0923 (Fisher's exact test), Q value = 1

Table S1615. Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
GALNT7 MUTATED	1	0	2	1	0
GALNT7 WILD-TYPE	11	10	5	6	15

'GALNT7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S1616. Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
GALNT7 MUTATED	9	0	1	1	0
GALNT7 WILD-TYPE	147	23	53	6	2

'GALNT7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S1617. Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
GALNT7 MUTATED	1	0	2
GALNT7 WILD-TYPE	42	39	51

'GALNT7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S1618. Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
GALNT7 MUTATED	1	2	2	1	2	0
GALNT7 WILD-TYPE	38	34	35	9	38	24

'GALNT7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S1619. Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
GALNT7 MUTATED	2	4	2	0
GALNT7 WILD-TYPE	63	60	38	17

'GALNT7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 1

Table S1620. Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
GALNT7 MUTATED	3	6	2
GALNT7 WILD-TYPE	76	79	79

'GALNT7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S1621. Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
GALNT7 MUTATED	1	8	2
GALNT7 WILD-TYPE	58	99	77

'GALNT7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S1622. Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
GALNT7 MUTATED	6	3	2
GALNT7 WILD-TYPE	72	68	89

'GALNT7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0348 (Fisher's exact test), Q value = 1

Table S1623. Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
GALNT7 MUTATED	2	2	0	7
GALNT7 WILD-TYPE	44	55	66	64

Figure S227. Get High-res Image Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GALNT7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1624. Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
GALNT7 MUTATED	2	1	0
GALNT7 WILD-TYPE	53	34	26

'GALNT7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S1625. Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
GALNT7 MUTATED	2	0	1
GALNT7 WILD-TYPE	41	46	26

'LGMN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S1626. Gene #150: 'LGMN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
LGMN MUTATED	2	1	0	0
LGMN WILD-TYPE	10	17	11	10

'LGMN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0793 (Fisher's exact test), Q value = 1

Table S1627. Gene #150: 'LGMN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
LGMN MUTATED	1	0	2	0	0
LGMN WILD-TYPE	11	10	5	7	15

'LGMN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S1628. Gene #150: 'LGMN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
LGMN MUTATED	6	0	0	1	0
LGMN WILD-TYPE	150	23	54	6	2

'LGMN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0182 (Fisher's exact test), Q value = 1

Table S1629. Gene #150: 'LGMN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
LGMN MUTATED	1	3	0	2	0	1
LGMN WILD-TYPE	38	33	37	8	40	23

Figure S228. Get High-res Image Gene #150: 'LGMN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'LGMN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S1630. Gene #150: 'LGMN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
LGMN MUTATED	3	2	1	1
LGMN WILD-TYPE	62	62	39	16

'LGMN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 1

Table S1631. Gene #150: 'LGMN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
LGMN MUTATED	3	4	0
LGMN WILD-TYPE	76	81	81

'LGMN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S1632. Gene #150: 'LGMN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
LGMN MUTATED	1	5	1
LGMN WILD-TYPE	58	102	78

'LGMN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 1

Table S1633. Gene #150: 'LGMN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
LGMN MUTATED	3	2	1
LGMN WILD-TYPE	75	69	90

'LGMN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S1634. Gene #150: 'LGMN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
LGMN MUTATED	1	2	0	3
LGMN WILD-TYPE	45	55	66	68

'EPS8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S1635. Gene #151: 'EPS8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
EPS8 MUTATED	9	0	1	1	0
EPS8 WILD-TYPE	147	23	53	6	2

'EPS8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 1

Table S1636. Gene #151: 'EPS8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
EPS8 MUTATED	3	0	3
EPS8 WILD-TYPE	40	39	50

'EPS8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S1637. Gene #151: 'EPS8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
EPS8 MUTATED	4	2	1	0	2	1
EPS8 WILD-TYPE	35	34	36	10	38	23

'EPS8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S1638. Gene #151: 'EPS8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
EPS8 MUTATED	3	4	2	1
EPS8 WILD-TYPE	62	60	38	16

'EPS8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S1639. Gene #151: 'EPS8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
EPS8 MUTATED	5	4	2
EPS8 WILD-TYPE	74	81	79

'EPS8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S1640. Gene #151: 'EPS8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
EPS8 MUTATED	2	7	2
EPS8 WILD-TYPE	57	100	77

'EPS8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S1641. Gene #151: 'EPS8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
EPS8 MUTATED	7	3	2
EPS8 WILD-TYPE	71	68	89

'EPS8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S1642. Gene #151: 'EPS8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
EPS8 MUTATED	3	3	1	5
EPS8 WILD-TYPE	43	54	65	66

'EPS8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1643. Gene #151: 'EPS8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
EPS8 MUTATED	3	2	1
EPS8 WILD-TYPE	52	33	25

'EPS8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S1644. Gene #151: 'EPS8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
EPS8 MUTATED	2	2	2
EPS8 WILD-TYPE	41	44	25

'TGOLN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S1645. Gene #152: 'TGOLN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
TGOLN2 MUTATED	3	0	0	0	0
TGOLN2 WILD-TYPE	153	23	54	7	2

'TGOLN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S1646. Gene #152: 'TGOLN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
TGOLN2 MUTATED	0	2	1	0	0	0
TGOLN2 WILD-TYPE	39	34	36	10	40	24

'TGOLN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S1647. Gene #152: 'TGOLN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
TGOLN2 MUTATED	2	0	1	0
TGOLN2 WILD-TYPE	63	64	39	17

'TGOLN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 1

Table S1648. Gene #152: 'TGOLN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
TGOLN2 MUTATED	2	0	1
TGOLN2 WILD-TYPE	77	85	80

'TGOLN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1649. Gene #152: 'TGOLN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
TGOLN2 MUTATED	1	1	1
TGOLN2 WILD-TYPE	58	106	78

'TGOLN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1650. Gene #152: 'TGOLN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
TGOLN2 MUTATED	1	1	1
TGOLN2 WILD-TYPE	77	70	90

'TGOLN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S1651. Gene #152: 'TGOLN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
TGOLN2 MUTATED	0	2	0	1
TGOLN2 WILD-TYPE	46	55	66	70

'TPX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S1652. Gene #153: 'TPX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
TPX2 MUTATED	5	0	0	1	0
TPX2 WILD-TYPE	151	23	54	6	2

'TPX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S1653. Gene #153: 'TPX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
TPX2 MUTATED	2	1	1
TPX2 WILD-TYPE	41	38	52

'TPX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S1654. Gene #153: 'TPX2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
TPX2 MUTATED	3	2	0	0	1	0
TPX2 WILD-TYPE	36	34	37	10	39	24

'TPX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S1655. Gene #153: 'TPX2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
TPX2 MUTATED	2	4	0	0
TPX2 WILD-TYPE	63	60	40	17

'TPX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S1656. Gene #153: 'TPX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
TPX2 MUTATED	4	2	0
TPX2 WILD-TYPE	75	83	81

'TPX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S1657. Gene #153: 'TPX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
TPX2 MUTATED	2	4	0
TPX2 WILD-TYPE	57	103	79

'TPX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0649 (Fisher's exact test), Q value = 1

Table S1658. Gene #153: 'TPX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
TPX2 MUTATED	4	2	0
TPX2 WILD-TYPE	74	69	91

'TPX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S1659. Gene #153: 'TPX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
TPX2 MUTATED	1	2	0	3
TPX2 WILD-TYPE	45	55	66	68

'TPX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S1660. Gene #153: 'TPX2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
TPX2 MUTATED	0	2	1
TPX2 WILD-TYPE	55	33	25

'TPX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S1661. Gene #153: 'TPX2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
TPX2 MUTATED	1	0	2
TPX2 WILD-TYPE	42	46	25

'C14ORF118 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S1662. Gene #154: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
C14ORF118 MUTATED	2	1	1	0
C14ORF118 WILD-TYPE	10	17	10	10

'C14ORF118 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0917 (Fisher's exact test), Q value = 1

Table S1663. Gene #154: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
C14ORF118 MUTATED	1	0	2	1	0
C14ORF118 WILD-TYPE	11	10	5	6	15

'C14ORF118 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0549 (Fisher's exact test), Q value = 1

Table S1664. Gene #154: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
C14ORF118 MUTATED	15	0	0	0	0
C14ORF118 WILD-TYPE	141	23	54	7	2

'C14ORF118 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S1665. Gene #154: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
C14ORF118 MUTATED	2	4	3
C14ORF118 WILD-TYPE	41	35	50

'C14ORF118 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0862 (Fisher's exact test), Q value = 1

Table S1666. Gene #154: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
C14ORF118 MUTATED	6	4	1	1	1	0
C14ORF118 WILD-TYPE	33	32	36	9	39	24

'C14ORF118 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S1667. Gene #154: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
C14ORF118 MUTATED	8	3	2	0
C14ORF118 WILD-TYPE	57	61	38	17

'C14ORF118 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S1668. Gene #154: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
C14ORF118 MUTATED	5	4	6
C14ORF118 WILD-TYPE	74	81	75

'C14ORF118 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S1669. Gene #154: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
C14ORF118 MUTATED	2	7	6
C14ORF118 WILD-TYPE	57	100	73

'C14ORF118 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S1670. Gene #154: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
C14ORF118 MUTATED	6	3	5
C14ORF118 WILD-TYPE	72	68	86

'C14ORF118 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S1671. Gene #154: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
C14ORF118 MUTATED	1	4	4	5
C14ORF118 WILD-TYPE	45	53	62	66

'C14ORF118 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1672. Gene #154: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
C14ORF118 MUTATED	4	2	1
C14ORF118 WILD-TYPE	51	33	25

'C14ORF118 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S1673. Gene #154: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
C14ORF118 MUTATED	2	3	2
C14ORF118 WILD-TYPE	41	43	25

'SLC34A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S1674. Gene #155: 'SLC34A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
SLC34A3 MUTATED	5	0	0	1	0
SLC34A3 WILD-TYPE	151	23	54	6	2

'SLC34A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S1675. Gene #155: 'SLC34A3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
SLC34A3 MUTATED	2	0	3
SLC34A3 WILD-TYPE	41	39	50

'SLC34A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S1676. Gene #155: 'SLC34A3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
SLC34A3 MUTATED	3	1	1	0	0	0
SLC34A3 WILD-TYPE	36	35	36	10	40	24

'SLC34A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1677. Gene #155: 'SLC34A3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
SLC34A3 MUTATED	2	2	1	0
SLC34A3 WILD-TYPE	63	62	39	17

'SLC34A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S1678. Gene #155: 'SLC34A3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
SLC34A3 MUTATED	3	1	2
SLC34A3 WILD-TYPE	76	84	79

'SLC34A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1679. Gene #155: 'SLC34A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
SLC34A3 MUTATED	1	3	2
SLC34A3 WILD-TYPE	58	104	77

'SLC34A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S1680. Gene #155: 'SLC34A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
SLC34A3 MUTATED	2	3	1
SLC34A3 WILD-TYPE	76	68	90

'SLC34A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0328 (Fisher's exact test), Q value = 1

Table S1681. Gene #155: 'SLC34A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
SLC34A3 MUTATED	0	1	0	5
SLC34A3 WILD-TYPE	46	56	66	66

Figure S229. Get High-res Image Gene #155: 'SLC34A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SLC34A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S1682. Gene #155: 'SLC34A3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
SLC34A3 MUTATED	1	2	2
SLC34A3 WILD-TYPE	54	33	24

'SLC34A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0414 (Fisher's exact test), Q value = 1

Table S1683. Gene #155: 'SLC34A3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
SLC34A3 MUTATED	2	0	3
SLC34A3 WILD-TYPE	41	46	24

Figure S230. Get High-res Image Gene #155: 'SLC34A3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZNF662 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S1684. Gene #156: 'ZNF662 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
ZNF662 MUTATED	2	1	0	0
ZNF662 WILD-TYPE	10	17	11	10

'ZNF662 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 1

Table S1685. Gene #156: 'ZNF662 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
ZNF662 MUTATED	1	0	1	1	0
ZNF662 WILD-TYPE	11	10	6	6	15

'ZNF662 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0692 (Fisher's exact test), Q value = 1

Table S1686. Gene #156: 'ZNF662 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
ZNF662 MUTATED	10	0	1	2	0
ZNF662 WILD-TYPE	146	23	53	5	2

'ZNF662 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S1687. Gene #156: 'ZNF662 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
ZNF662 MUTATED	3	0	5
ZNF662 WILD-TYPE	40	39	48

'ZNF662 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S1688. Gene #156: 'ZNF662 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
ZNF662 MUTATED	3	3	2	1	1	1
ZNF662 WILD-TYPE	36	33	35	9	39	23

'ZNF662 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S1689. Gene #156: 'ZNF662 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
ZNF662 MUTATED	2	6	2	1
ZNF662 WILD-TYPE	63	58	38	16

'ZNF662 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0741 (Fisher's exact test), Q value = 1

Table S1690. Gene #156: 'ZNF662 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
ZNF662 MUTATED	7	5	1
ZNF662 WILD-TYPE	72	80	80

'ZNF662 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S1691. Gene #156: 'ZNF662 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
ZNF662 MUTATED	2	9	2
ZNF662 WILD-TYPE	57	98	77

'ZNF662 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S1692. Gene #156: 'ZNF662 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
ZNF662 MUTATED	5	4	3
ZNF662 WILD-TYPE	73	67	88

'ZNF662 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0667 (Fisher's exact test), Q value = 1

Table S1693. Gene #156: 'ZNF662 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
ZNF662 MUTATED	2	4	0	6
ZNF662 WILD-TYPE	44	53	66	65

'ZNF662 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1694. Gene #156: 'ZNF662 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
ZNF662 MUTATED	3	2	1
ZNF662 WILD-TYPE	52	33	25

'ZNF662 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0515 (Fisher's exact test), Q value = 1

Table S1695. Gene #156: 'ZNF662 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
ZNF662 MUTATED	3	0	3
ZNF662 WILD-TYPE	40	46	24

'ZDBF2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S1696. Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
ZDBF2 MUTATED	2	3	0	0
ZDBF2 WILD-TYPE	10	15	11	10

'ZDBF2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S1697. Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
ZDBF2 MUTATED	3	0	1	1	0
ZDBF2 WILD-TYPE	9	10	6	6	15

'ZDBF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0191 (Fisher's exact test), Q value = 1

Table S1698. Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
ZDBF2 MUTATED	15	1	0	2	0
ZDBF2 WILD-TYPE	141	22	54	5	2

Figure S231. Get High-res Image Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZDBF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S1699. Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
ZDBF2 MUTATED	3	2	5
ZDBF2 WILD-TYPE	40	37	48

'ZDBF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S1700. Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
ZDBF2 MUTATED	4	6	3	1	2	1
ZDBF2 WILD-TYPE	35	30	34	9	38	23

'ZDBF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.963 (Fisher's exact test), Q value = 1

Table S1701. Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
ZDBF2 MUTATED	6	7	3	1
ZDBF2 WILD-TYPE	59	57	37	16

'ZDBF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0781 (Fisher's exact test), Q value = 1

Table S1702. Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
ZDBF2 MUTATED	9	7	2
ZDBF2 WILD-TYPE	70	78	79

'ZDBF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 1

Table S1703. Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
ZDBF2 MUTATED	3	12	3
ZDBF2 WILD-TYPE	56	95	76

'ZDBF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 1

Table S1704. Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
ZDBF2 MUTATED	8	5	4
ZDBF2 WILD-TYPE	70	66	87

'ZDBF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0696 (Fisher's exact test), Q value = 1

Table S1705. Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
ZDBF2 MUTATED	2	6	1	8
ZDBF2 WILD-TYPE	44	51	65	63

'ZDBF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S1706. Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
ZDBF2 MUTATED	4	3	1
ZDBF2 WILD-TYPE	51	32	25

'ZDBF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S1707. Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
ZDBF2 MUTATED	4	1	3
ZDBF2 WILD-TYPE	39	45	24

'SFRP4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S1708. Gene #158: 'SFRP4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
SFRP4 MUTATED	2	1	0	0
SFRP4 WILD-TYPE	10	17	11	10

'SFRP4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 1

Table S1709. Gene #158: 'SFRP4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
SFRP4 MUTATED	1	0	1	1	0
SFRP4 WILD-TYPE	11	10	6	6	15

'SFRP4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0288 (Fisher's exact test), Q value = 1

Table S1710. Gene #158: 'SFRP4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
SFRP4 MUTATED	6	0	0	2	0
SFRP4 WILD-TYPE	150	23	54	5	2

Figure S232. Get High-res Image Gene #158: 'SFRP4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SFRP4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S1711. Gene #158: 'SFRP4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
SFRP4 MUTATED	0	2	2
SFRP4 WILD-TYPE	43	37	51

'SFRP4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S1712. Gene #158: 'SFRP4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
SFRP4 MUTATED	1	2	0	0	3	0
SFRP4 WILD-TYPE	38	34	37	10	37	24

'SFRP4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S1713. Gene #158: 'SFRP4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
SFRP4 MUTATED	2	4	0	0
SFRP4 WILD-TYPE	63	60	40	17

'SFRP4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S1714. Gene #158: 'SFRP4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
SFRP4 MUTATED	5	2	1
SFRP4 WILD-TYPE	74	83	80

'SFRP4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S1715. Gene #158: 'SFRP4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
SFRP4 MUTATED	1	6	1
SFRP4 WILD-TYPE	58	101	78

'SFRP4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S1716. Gene #158: 'SFRP4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
SFRP4 MUTATED	4	2	1
SFRP4 WILD-TYPE	74	69	90

'SFRP4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S1717. Gene #158: 'SFRP4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
SFRP4 MUTATED	1	1	1	4
SFRP4 WILD-TYPE	45	56	65	67

'CCDC146 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S1718. Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
CCDC146 MUTATED	1	2	1	0
CCDC146 WILD-TYPE	11	16	10	10

'CCDC146 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0488 (Fisher's exact test), Q value = 1

Table S1719. Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
CCDC146 MUTATED	2	0	2	0	0
CCDC146 WILD-TYPE	10	10	5	7	15

Figure S233. Get High-res Image Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CCDC146 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0177 (Fisher's exact test), Q value = 1

Table S1720. Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
CCDC146 MUTATED	12	0	0	2	0
CCDC146 WILD-TYPE	144	23	54	5	2

Figure S234. Get High-res Image Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CCDC146 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S1721. Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
CCDC146 MUTATED	2	1	4
CCDC146 WILD-TYPE	41	38	49

'CCDC146 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S1722. Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
CCDC146 MUTATED	4	4	3	1	0	0
CCDC146 WILD-TYPE	35	32	34	9	40	24

'CCDC146 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S1723. Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
CCDC146 MUTATED	4	5	3	0
CCDC146 WILD-TYPE	61	59	37	17

'CCDC146 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S1724. Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
CCDC146 MUTATED	6	5	3
CCDC146 WILD-TYPE	73	80	78

'CCDC146 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S1725. Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
CCDC146 MUTATED	1	10	3
CCDC146 WILD-TYPE	58	97	76

'CCDC146 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S1726. Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
CCDC146 MUTATED	7	3	3
CCDC146 WILD-TYPE	71	68	88

'CCDC146 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S1727. Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
CCDC146 MUTATED	1	4	1	7
CCDC146 WILD-TYPE	45	53	65	64

'CCDC146 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1728. Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
CCDC146 MUTATED	3	1	1
CCDC146 WILD-TYPE	52	34	25

'CCDC146 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S1729. Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
CCDC146 MUTATED	1	1	3
CCDC146 WILD-TYPE	42	45	24

'C7ORF60 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S1730. Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
C7ORF60 MUTATED	2	1	0	0
C7ORF60 WILD-TYPE	10	17	11	10

'C7ORF60 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 1

Table S1731. Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
C7ORF60 MUTATED	1	0	1	1	0
C7ORF60 WILD-TYPE	11	10	6	6	15

'C7ORF60 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S1732. Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
C7ORF60 MUTATED	10	0	0	0	0
C7ORF60 WILD-TYPE	146	23	54	7	2

'C7ORF60 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1733. Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
C7ORF60 MUTATED	2	1	2
C7ORF60 WILD-TYPE	41	38	51

'C7ORF60 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S1734. Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
C7ORF60 MUTATED	3	2	1	0	3	0
C7ORF60 WILD-TYPE	36	34	36	10	37	24

'C7ORF60 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S1735. Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
C7ORF60 MUTATED	3	4	2	0
C7ORF60 WILD-TYPE	62	60	38	17

'C7ORF60 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 1

Table S1736. Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
C7ORF60 MUTATED	5	4	1
C7ORF60 WILD-TYPE	74	81	80

'C7ORF60 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S1737. Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
C7ORF60 MUTATED	2	7	1
C7ORF60 WILD-TYPE	57	100	78

'C7ORF60 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S1738. Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
C7ORF60 MUTATED	6	2	1
C7ORF60 WILD-TYPE	72	69	90

'C7ORF60 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S1739. Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
C7ORF60 MUTATED	2	3	0	4
C7ORF60 WILD-TYPE	44	54	66	67

'C7ORF60 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S1740. Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
C7ORF60 MUTATED	1	2	1
C7ORF60 WILD-TYPE	54	33	25

'C7ORF60 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S1741. Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
C7ORF60 MUTATED	2	0	2
C7ORF60 WILD-TYPE	41	46	25

'ZNF649 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 1

Table S1742. Gene #161: 'ZNF649 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
ZNF649 MUTATED	2	2	0	0
ZNF649 WILD-TYPE	10	16	11	10

'ZNF649 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S1743. Gene #161: 'ZNF649 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
ZNF649 MUTATED	2	0	1	1	0
ZNF649 WILD-TYPE	10	10	6	6	15

'ZNF649 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0766 (Fisher's exact test), Q value = 1

Table S1744. Gene #161: 'ZNF649 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
ZNF649 MUTATED	14	0	0	0	0
ZNF649 WILD-TYPE	142	23	54	7	2

'ZNF649 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1745. Gene #161: 'ZNF649 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
ZNF649 MUTATED	2	2	3
ZNF649 WILD-TYPE	41	37	50

'ZNF649 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S1746. Gene #161: 'ZNF649 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
ZNF649 MUTATED	5	3	2	1	2	1
ZNF649 WILD-TYPE	34	33	35	9	38	23

'ZNF649 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1747. Gene #161: 'ZNF649 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
ZNF649 MUTATED	5	5	3	1
ZNF649 WILD-TYPE	60	59	37	16

'ZNF649 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S1748. Gene #161: 'ZNF649 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
ZNF649 MUTATED	5	5	4
ZNF649 WILD-TYPE	74	80	77

'ZNF649 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S1749. Gene #161: 'ZNF649 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
ZNF649 MUTATED	2	7	5
ZNF649 WILD-TYPE	57	100	74

'ZNF649 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 1

Table S1750. Gene #161: 'ZNF649 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
ZNF649 MUTATED	6	2	5
ZNF649 WILD-TYPE	72	69	86

'ZNF649 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S1751. Gene #161: 'ZNF649 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
ZNF649 MUTATED	2	4	3	4
ZNF649 WILD-TYPE	44	53	63	67

'ZNF649 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1752. Gene #161: 'ZNF649 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
ZNF649 MUTATED	3	2	1
ZNF649 WILD-TYPE	52	33	25

'ZNF649 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 1

Table S1753. Gene #161: 'ZNF649 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
ZNF649 MUTATED	3	1	2
ZNF649 WILD-TYPE	40	45	25

'RASSF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S1754. Gene #162: 'RASSF9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
RASSF9 MUTATED	7	0	0	1	0
RASSF9 WILD-TYPE	149	23	54	6	2

'RASSF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S1755. Gene #162: 'RASSF9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
RASSF9 MUTATED	1	0	2
RASSF9 WILD-TYPE	42	39	51

'RASSF9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S1756. Gene #162: 'RASSF9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
RASSF9 MUTATED	2	3	1	0	1	0
RASSF9 WILD-TYPE	37	33	36	10	39	24

'RASSF9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1757. Gene #162: 'RASSF9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
RASSF9 MUTATED	3	3	1	0
RASSF9 WILD-TYPE	62	61	39	17

'RASSF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S1758. Gene #162: 'RASSF9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
RASSF9 MUTATED	4	3	2
RASSF9 WILD-TYPE	75	82	79

'RASSF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S1759. Gene #162: 'RASSF9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
RASSF9 MUTATED	0	7	2
RASSF9 WILD-TYPE	59	100	77

'RASSF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S1760. Gene #162: 'RASSF9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
RASSF9 MUTATED	5	1	2
RASSF9 WILD-TYPE	73	70	89

'RASSF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0875 (Fisher's exact test), Q value = 1

Table S1761. Gene #162: 'RASSF9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
RASSF9 MUTATED	2	1	0	5
RASSF9 WILD-TYPE	44	56	66	66

'NIPA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S1762. Gene #163: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
NIPA2 MUTATED	8	0	0	0	0
NIPA2 WILD-TYPE	148	23	54	7	2

'NIPA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S1763. Gene #163: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
NIPA2 MUTATED	2	1	1
NIPA2 WILD-TYPE	41	38	52

'NIPA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S1764. Gene #163: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
NIPA2 MUTATED	3	0	1	1	1	0
NIPA2 WILD-TYPE	36	36	36	9	39	24

'NIPA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S1765. Gene #163: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
NIPA2 MUTATED	2	2	2	0
NIPA2 WILD-TYPE	63	62	38	17

'NIPA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1766. Gene #163: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
NIPA2 MUTATED	2	3	3
NIPA2 WILD-TYPE	77	82	78

'NIPA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S1767. Gene #163: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
NIPA2 MUTATED	2	3	3
NIPA2 WILD-TYPE	57	104	76

'NIPA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S1768. Gene #163: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
NIPA2 MUTATED	3	3	2
NIPA2 WILD-TYPE	75	68	89

'NIPA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S1769. Gene #163: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
NIPA2 MUTATED	1	4	2	1
NIPA2 WILD-TYPE	45	53	64	70

'NIPA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S1770. Gene #163: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
NIPA2 MUTATED	1	2	0
NIPA2 WILD-TYPE	54	33	26

'NIPA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1771. Gene #163: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
NIPA2 MUTATED	1	1	1
NIPA2 WILD-TYPE	42	45	26

'FILIP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 1

Table S1772. Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
FILIP1 MUTATED	2	2	0	0
FILIP1 WILD-TYPE	10	16	11	10

'FILIP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 1

Table S1773. Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
FILIP1 MUTATED	2	0	1	1	0
FILIP1 WILD-TYPE	10	10	6	6	15

'FILIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0559 (Fisher's exact test), Q value = 1

Table S1774. Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
FILIP1 MUTATED	13	0	1	2	0
FILIP1 WILD-TYPE	143	23	53	5	2

'FILIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S1775. Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
FILIP1 MUTATED	2	1	5
FILIP1 WILD-TYPE	41	38	48

'FILIP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0194 (Fisher's exact test), Q value = 1

Table S1776. Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
FILIP1 MUTATED	4	6	0	2	1	1
FILIP1 WILD-TYPE	35	30	37	8	39	23

Figure S235. Get High-res Image Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'FILIP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S1777. Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
FILIP1 MUTATED	6	5	2	1
FILIP1 WILD-TYPE	59	59	38	16

'FILIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S1778. Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
FILIP1 MUTATED	6	6	4
FILIP1 WILD-TYPE	73	79	77

'FILIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 1

Table S1779. Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
FILIP1 MUTATED	1	10	5
FILIP1 WILD-TYPE	58	97	74

'FILIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S1780. Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
FILIP1 MUTATED	6	4	5
FILIP1 WILD-TYPE	72	67	86

'FILIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S1781. Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
FILIP1 MUTATED	2	3	3	7
FILIP1 WILD-TYPE	44	54	63	64

'FILIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1782. Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
FILIP1 MUTATED	3	2	1
FILIP1 WILD-TYPE	52	33	25

'FILIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S1783. Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
FILIP1 MUTATED	3	2	1
FILIP1 WILD-TYPE	40	44	26

'PHKA2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1784. Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
PHKA2 MUTATED	2	2	1	1
PHKA2 WILD-TYPE	10	16	10	9

'PHKA2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S1785. Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
PHKA2 MUTATED	1	1	1	2	1
PHKA2 WILD-TYPE	11	9	6	5	14

'PHKA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.016 (Fisher's exact test), Q value = 1

Table S1786. Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
PHKA2 MUTATED	13	0	0	2	0
PHKA2 WILD-TYPE	143	23	54	5	2

Figure S236. Get High-res Image Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PHKA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S1787. Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
PHKA2 MUTATED	1	0	4
PHKA2 WILD-TYPE	42	39	49

'PHKA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S1788. Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
PHKA2 MUTATED	1	3	2	1	3	2
PHKA2 WILD-TYPE	38	33	35	9	37	22

'PHKA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S1789. Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
PHKA2 MUTATED	2	5	3	2
PHKA2 WILD-TYPE	63	59	37	15

'PHKA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 1

Table S1790. Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
PHKA2 MUTATED	5	8	2
PHKA2 WILD-TYPE	74	77	79

'PHKA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0708 (Fisher's exact test), Q value = 1

Table S1791. Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
PHKA2 MUTATED	1	11	3
PHKA2 WILD-TYPE	58	96	76

'PHKA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0517 (Fisher's exact test), Q value = 1

Table S1792. Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
PHKA2 MUTATED	9	5	2
PHKA2 WILD-TYPE	69	66	89

'PHKA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00473 (Fisher's exact test), Q value = 1

Table S1793. Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
PHKA2 MUTATED	2	4	0	10
PHKA2 WILD-TYPE	44	53	66	61

Figure S237. Get High-res Image Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PHKA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1794. Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
PHKA2 MUTATED	3	1	1
PHKA2 WILD-TYPE	52	34	25

'PHKA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S1795. Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
PHKA2 MUTATED	2	1	2
PHKA2 WILD-TYPE	41	45	25

'COBLL1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 1

Table S1796. Gene #166: 'COBLL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
COBLL1 MUTATED	2	2	0	0
COBLL1 WILD-TYPE	10	16	11	10

'COBLL1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S1797. Gene #166: 'COBLL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
COBLL1 MUTATED	2	0	1	1	0
COBLL1 WILD-TYPE	10	10	6	6	15

'COBLL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S1798. Gene #166: 'COBLL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
COBLL1 MUTATED	13	0	1	1	0
COBLL1 WILD-TYPE	143	23	53	6	2

'COBLL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S1799. Gene #166: 'COBLL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
COBLL1 MUTATED	3	0	5
COBLL1 WILD-TYPE	40	39	48

'COBLL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S1800. Gene #166: 'COBLL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
COBLL1 MUTATED	4	4	2	1	2	1
COBLL1 WILD-TYPE	35	32	35	9	38	23

'COBLL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S1801. Gene #166: 'COBLL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
COBLL1 MUTATED	4	6	3	1
COBLL1 WILD-TYPE	61	58	37	16

'COBLL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S1802. Gene #166: 'COBLL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
COBLL1 MUTATED	6	7	2
COBLL1 WILD-TYPE	73	78	79

'COBLL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S1803. Gene #166: 'COBLL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
COBLL1 MUTATED	2	10	3
COBLL1 WILD-TYPE	57	97	76

'COBLL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S1804. Gene #166: 'COBLL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
COBLL1 MUTATED	8	3	3
COBLL1 WILD-TYPE	70	68	88

'COBLL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 1

Table S1805. Gene #166: 'COBLL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
COBLL1 MUTATED	3	5	1	5
COBLL1 WILD-TYPE	43	52	65	66

'COBLL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1806. Gene #166: 'COBLL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
COBLL1 MUTATED	3	2	1
COBLL1 WILD-TYPE	52	33	25

'COBLL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S1807. Gene #166: 'COBLL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
COBLL1 MUTATED	3	1	2
COBLL1 WILD-TYPE	40	45	25

'AGPAT9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S1808. Gene #167: 'AGPAT9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
AGPAT9 MUTATED	8	0	0	0	0
AGPAT9 WILD-TYPE	148	23	54	7	2

'AGPAT9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S1809. Gene #167: 'AGPAT9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
AGPAT9 MUTATED	0	0	3
AGPAT9 WILD-TYPE	43	39	50

'AGPAT9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S1810. Gene #167: 'AGPAT9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
AGPAT9 MUTATED	2	2	1	2	0	1
AGPAT9 WILD-TYPE	37	34	36	8	40	23

'AGPAT9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S1811. Gene #167: 'AGPAT9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
AGPAT9 MUTATED	3	1	3	1
AGPAT9 WILD-TYPE	62	63	37	16

'AGPAT9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0305 (Fisher's exact test), Q value = 1

Table S1812. Gene #167: 'AGPAT9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
AGPAT9 MUTATED	0	6	2
AGPAT9 WILD-TYPE	79	79	79

Figure S238. Get High-res Image Gene #167: 'AGPAT9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'AGPAT9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S1813. Gene #167: 'AGPAT9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
AGPAT9 MUTATED	0	4	4
AGPAT9 WILD-TYPE	59	103	75

'AGPAT9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1814. Gene #167: 'AGPAT9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
AGPAT9 MUTATED	3	2	3
AGPAT9 WILD-TYPE	75	69	88

'AGPAT9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S1815. Gene #167: 'AGPAT9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
AGPAT9 MUTATED	2	2	1	3
AGPAT9 WILD-TYPE	44	55	65	68

'NOP56 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0245 (Fisher's exact test), Q value = 1

Table S1816. Gene #168: 'NOP56 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
NOP56 MUTATED	9	0	0	2	0
NOP56 WILD-TYPE	147	23	54	5	2

Figure S239. Get High-res Image Gene #168: 'NOP56 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NOP56 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 1

Table S1817. Gene #168: 'NOP56 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
NOP56 MUTATED	2	1	4
NOP56 WILD-TYPE	41	38	49

'NOP56 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00986 (Fisher's exact test), Q value = 1

Table S1818. Gene #168: 'NOP56 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
NOP56 MUTATED	5	4	0	1	0	0
NOP56 WILD-TYPE	34	32	37	9	40	24

Figure S240. Get High-res Image Gene #168: 'NOP56 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'NOP56 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S1819. Gene #168: 'NOP56 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
NOP56 MUTATED	6	3	1	0
NOP56 WILD-TYPE	59	61	39	17

'NOP56 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S1820. Gene #168: 'NOP56 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
NOP56 MUTATED	6	2	3
NOP56 WILD-TYPE	73	83	78

'NOP56 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1821. Gene #168: 'NOP56 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
NOP56 MUTATED	2	5	4
NOP56 WILD-TYPE	57	102	75

'NOP56 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S1822. Gene #168: 'NOP56 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
NOP56 MUTATED	3	5	3
NOP56 WILD-TYPE	75	66	88

'NOP56 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S1823. Gene #168: 'NOP56 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
NOP56 MUTATED	0	3	2	6
NOP56 WILD-TYPE	46	54	64	65

'NOP56 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 1

Table S1824. Gene #168: 'NOP56 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
NOP56 MUTATED	1	2	1
NOP56 WILD-TYPE	54	33	25

'NOP56 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S1825. Gene #168: 'NOP56 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
NOP56 MUTATED	1	1	2
NOP56 WILD-TYPE	42	45	25

'RBL2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 1

Table S1826. Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
RBL2 MUTATED	2	2	0	0
RBL2 WILD-TYPE	10	16	11	10

'RBL2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S1827. Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
RBL2 MUTATED	2	0	1	1	0
RBL2 WILD-TYPE	10	10	6	6	15

'RBL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0252 (Fisher's exact test), Q value = 1

Table S1828. Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
RBL2 MUTATED	10	0	0	2	0
RBL2 WILD-TYPE	146	23	54	5	2

Figure S241. Get High-res Image Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RBL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S1829. Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
RBL2 MUTATED	1	2	2
RBL2 WILD-TYPE	42	37	51

'RBL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S1830. Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
RBL2 MUTATED	3	3	3	1	1	0
RBL2 WILD-TYPE	36	33	34	9	39	24

'RBL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 1

Table S1831. Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
RBL2 MUTATED	3	4	4	0
RBL2 WILD-TYPE	62	60	36	17

'RBL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S1832. Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
RBL2 MUTATED	4	6	2
RBL2 WILD-TYPE	75	79	79

'RBL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0108 (Fisher's exact test), Q value = 1

Table S1833. Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
RBL2 MUTATED	0	10	2
RBL2 WILD-TYPE	59	97	77

Figure S242. Get High-res Image Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RBL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S1834. Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
RBL2 MUTATED	7	3	2
RBL2 WILD-TYPE	71	68	89

'RBL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S1835. Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
RBL2 MUTATED	1	2	2	7
RBL2 WILD-TYPE	45	55	64	64

'RBL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S1836. Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
RBL2 MUTATED	2	0	2
RBL2 WILD-TYPE	53	35	24

'RBL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S1837. Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
RBL2 MUTATED	0	2	2
RBL2 WILD-TYPE	43	44	25

'ABCC6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S1838. Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
ABCC6 MUTATED	2	1	1	0
ABCC6 WILD-TYPE	10	17	10	10

'ABCC6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00891 (Fisher's exact test), Q value = 1

Table S1839. Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
ABCC6 MUTATED	1	0	3	0	0
ABCC6 WILD-TYPE	11	10	4	7	15

Figure S243. Get High-res Image Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ABCC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 1

Table S1840. Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
ABCC6 MUTATED	12	0	0	0	0
ABCC6 WILD-TYPE	144	23	54	7	2

'ABCC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S1841. Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
ABCC6 MUTATED	1	2	2
ABCC6 WILD-TYPE	42	37	51

'ABCC6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0781 (Fisher's exact test), Q value = 1

Table S1842. Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
ABCC6 MUTATED	4	2	1	2	0	2
ABCC6 WILD-TYPE	35	34	36	8	40	22

'ABCC6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 1

Table S1843. Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
ABCC6 MUTATED	6	3	1	1
ABCC6 WILD-TYPE	59	61	39	16

'ABCC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 1

Table S1844. Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
ABCC6 MUTATED	3	6	3
ABCC6 WILD-TYPE	76	79	78

'ABCC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S1845. Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
ABCC6 MUTATED	1	6	5
ABCC6 WILD-TYPE	58	101	74

'ABCC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S1846. Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
ABCC6 MUTATED	4	1	6
ABCC6 WILD-TYPE	74	70	85

'ABCC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S1847. Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
ABCC6 MUTATED	3	1	3	4
ABCC6 WILD-TYPE	43	56	63	67

'ABCC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S1848. Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
ABCC6 MUTATED	3	0	1
ABCC6 WILD-TYPE	52	35	25

'ABCC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1849. Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
ABCC6 MUTATED	1	2	1
ABCC6 WILD-TYPE	42	44	26

'CCDC104 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.029 (Fisher's exact test), Q value = 1

Table S1850. Gene #171: 'CCDC104 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
CCDC104 MUTATED	8	0	0	2	0
CCDC104 WILD-TYPE	148	23	54	5	2

Figure S244. Get High-res Image Gene #171: 'CCDC104 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CCDC104 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 1

Table S1851. Gene #171: 'CCDC104 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
CCDC104 MUTATED	0	1	4
CCDC104 WILD-TYPE	43	38	49

'CCDC104 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0761 (Fisher's exact test), Q value = 1

Table S1852. Gene #171: 'CCDC104 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
CCDC104 MUTATED	1	4	1	2	1	0
CCDC104 WILD-TYPE	38	32	36	8	39	24

'CCDC104 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S1853. Gene #171: 'CCDC104 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
CCDC104 MUTATED	4	2	3	0
CCDC104 WILD-TYPE	61	62	37	17

'CCDC104 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S1854. Gene #171: 'CCDC104 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
CCDC104 MUTATED	3	3	4
CCDC104 WILD-TYPE	76	82	77

'CCDC104 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S1855. Gene #171: 'CCDC104 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
CCDC104 MUTATED	1	6	3
CCDC104 WILD-TYPE	58	101	76

'CCDC104 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S1856. Gene #171: 'CCDC104 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
CCDC104 MUTATED	4	2	3
CCDC104 WILD-TYPE	74	69	88

'CCDC104 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S1857. Gene #171: 'CCDC104 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
CCDC104 MUTATED	0	3	2	4
CCDC104 WILD-TYPE	46	54	64	67

'CCDC104 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S1858. Gene #171: 'CCDC104 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
CCDC104 MUTATED	3	0	0
CCDC104 WILD-TYPE	52	35	26

'CCDC104 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S1859. Gene #171: 'CCDC104 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
CCDC104 MUTATED	1	2	0
CCDC104 WILD-TYPE	42	44	27

'MLL2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 1

Table S1860. Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
MLL2 MUTATED	4	4	1	1
MLL2 WILD-TYPE	8	14	10	9

'MLL2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0511 (Fisher's exact test), Q value = 1

Table S1861. Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
MLL2 MUTATED	4	0	2	3	1
MLL2 WILD-TYPE	8	10	5	4	14

'MLL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0091 (Fisher's exact test), Q value = 1

Table S1862. Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
MLL2 MUTATED	28	2	1	2	0
MLL2 WILD-TYPE	128	21	53	5	2

Figure S245. Get High-res Image Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MLL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0199 (Fisher's exact test), Q value = 1

Table S1863. Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
MLL2 MUTATED	4	1	11
MLL2 WILD-TYPE	39	38	42

Figure S246. Get High-res Image Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MLL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0752 (Fisher's exact test), Q value = 1

Table S1864. Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
MLL2 MUTATED	3	7	7	4	3	2
MLL2 WILD-TYPE	36	29	30	6	37	22

'MLL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0656 (Fisher's exact test), Q value = 1

Table S1865. Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
MLL2 MUTATED	7	6	11	2
MLL2 WILD-TYPE	58	58	29	15

'MLL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S1866. Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
MLL2 MUTATED	10	13	10
MLL2 WILD-TYPE	69	72	71

'MLL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S1867. Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
MLL2 MUTATED	6	17	10
MLL2 WILD-TYPE	53	90	69

'MLL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S1868. Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
MLL2 MUTATED	13	10	9
MLL2 WILD-TYPE	65	61	82

'MLL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 1

Table S1869. Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
MLL2 MUTATED	4	8	6	14
MLL2 WILD-TYPE	42	49	60	57

'MLL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S1870. Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
MLL2 MUTATED	6	3	4
MLL2 WILD-TYPE	49	32	22

'MLL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S1871. Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
MLL2 MUTATED	4	5	4
MLL2 WILD-TYPE	39	41	23

'SSH2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S1872. Gene #173: 'SSH2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
SSH2 MUTATED	2	1	1	0
SSH2 WILD-TYPE	10	17	10	10

'SSH2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0935 (Fisher's exact test), Q value = 1

Table S1873. Gene #173: 'SSH2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
SSH2 MUTATED	1	0	2	1	0
SSH2 WILD-TYPE	11	10	5	6	15

'SSH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 1

Table S1874. Gene #173: 'SSH2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
SSH2 MUTATED	12	0	0	0	0
SSH2 WILD-TYPE	144	23	54	7	2

'SSH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S1875. Gene #173: 'SSH2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
SSH2 MUTATED	2	1	1
SSH2 WILD-TYPE	41	38	52

'SSH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 1

Table S1876. Gene #173: 'SSH2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
SSH2 MUTATED	4	2	1	2	2	0
SSH2 WILD-TYPE	35	34	36	8	38	24

'SSH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S1877. Gene #173: 'SSH2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
SSH2 MUTATED	4	4	3	0
SSH2 WILD-TYPE	61	60	37	17

'SSH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S1878. Gene #173: 'SSH2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
SSH2 MUTATED	3	5	4
SSH2 WILD-TYPE	76	80	77

'SSH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S1879. Gene #173: 'SSH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
SSH2 MUTATED	2	6	4
SSH2 WILD-TYPE	57	101	75

'SSH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S1880. Gene #173: 'SSH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
SSH2 MUTATED	5	3	3
SSH2 WILD-TYPE	73	68	88

'SSH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S1881. Gene #173: 'SSH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
SSH2 MUTATED	2	3	2	4
SSH2 WILD-TYPE	44	54	64	67

'SSH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S1882. Gene #173: 'SSH2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
SSH2 MUTATED	2	2	0
SSH2 WILD-TYPE	53	33	26

'SSH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S1883. Gene #173: 'SSH2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
SSH2 MUTATED	2	1	1
SSH2 WILD-TYPE	41	45	26

'ZNF709 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S1884. Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
ZNF709 MUTATED	2	1	0	0
ZNF709 WILD-TYPE	10	17	11	10

'ZNF709 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 1

Table S1885. Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
ZNF709 MUTATED	1	0	1	1	0
ZNF709 WILD-TYPE	11	10	6	6	15

'ZNF709 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0262 (Fisher's exact test), Q value = 1

Table S1886. Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
ZNF709 MUTATED	10	0	0	2	0
ZNF709 WILD-TYPE	146	23	54	5	2

Figure S247. Get High-res Image Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF709 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S1887. Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
ZNF709 MUTATED	1	0	5
ZNF709 WILD-TYPE	42	39	48

'ZNF709 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S1888. Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
ZNF709 MUTATED	2	3	1	2	1	1
ZNF709 WILD-TYPE	37	33	36	8	39	23

'ZNF709 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S1889. Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
ZNF709 MUTATED	2	5	2	1
ZNF709 WILD-TYPE	63	59	38	16

'ZNF709 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 1

Table S1890. Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
ZNF709 MUTATED	5	6	1
ZNF709 WILD-TYPE	74	79	80

'ZNF709 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.011 (Fisher's exact test), Q value = 1

Table S1891. Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
ZNF709 MUTATED	0	10	2
ZNF709 WILD-TYPE	59	97	77

Figure S248. Get High-res Image Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF709 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S1892. Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
ZNF709 MUTATED	5	2	4
ZNF709 WILD-TYPE	73	69	87

'ZNF709 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 1

Table S1893. Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
ZNF709 MUTATED	2	2	1	6
ZNF709 WILD-TYPE	44	55	65	65

'ZNF709 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S1894. Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
ZNF709 MUTATED	2	0	2
ZNF709 WILD-TYPE	53	35	24

'ZNF709 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S1895. Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
ZNF709 MUTATED	1	1	2
ZNF709 WILD-TYPE	42	45	25

'BRDT MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1896. Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
BRDT MUTATED	1	1	1	0
BRDT WILD-TYPE	11	17	10	10

'BRDT MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S1897. Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
BRDT MUTATED	1	0	1	0	1
BRDT WILD-TYPE	11	10	6	7	14

'BRDT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0331 (Fisher's exact test), Q value = 1

Table S1898. Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
BRDT MUTATED	11	1	0	2	0
BRDT WILD-TYPE	145	22	54	5	2

Figure S249. Get High-res Image Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BRDT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S1899. Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
BRDT MUTATED	2	1	4
BRDT WILD-TYPE	41	38	49

'BRDT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 1

Table S1900. Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
BRDT MUTATED	4	4	1	3	0	1
BRDT WILD-TYPE	35	32	36	7	40	23

Figure S250. Get High-res Image Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'BRDT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.973 (Fisher's exact test), Q value = 1

Table S1901. Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
BRDT MUTATED	4	5	3	1
BRDT WILD-TYPE	61	59	37	16

'BRDT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S1902. Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
BRDT MUTATED	6	5	3
BRDT WILD-TYPE	73	80	78

'BRDT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S1903. Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
BRDT MUTATED	1	10	3
BRDT WILD-TYPE	58	97	76

'BRDT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S1904. Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
BRDT MUTATED	5	3	5
BRDT WILD-TYPE	73	68	86

'BRDT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S1905. Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
BRDT MUTATED	3	3	2	5
BRDT WILD-TYPE	43	54	64	66

'BRDT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1906. Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
BRDT MUTATED	3	1	1
BRDT WILD-TYPE	52	34	25

'BRDT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S1907. Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
BRDT MUTATED	1	1	3
BRDT WILD-TYPE	42	45	24

'SH3BGRL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0283 (Fisher's exact test), Q value = 1

Table S1908. Gene #176: 'SH3BGRL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
SH3BGRL MUTATED	4	0	0	2	0
SH3BGRL WILD-TYPE	152	23	54	5	2

Figure S251. Get High-res Image Gene #176: 'SH3BGRL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SH3BGRL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S1909. Gene #176: 'SH3BGRL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
SH3BGRL MUTATED	0	2	0	1	1	0
SH3BGRL WILD-TYPE	39	34	37	9	39	24

'SH3BGRL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S1910. Gene #176: 'SH3BGRL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
SH3BGRL MUTATED	1	1	2	0
SH3BGRL WILD-TYPE	64	63	38	17

'SH3BGRL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S1911. Gene #176: 'SH3BGRL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
SH3BGRL MUTATED	2	3	1
SH3BGRL WILD-TYPE	77	82	80

'SH3BGRL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 1

Table S1912. Gene #176: 'SH3BGRL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
SH3BGRL MUTATED	0	5	1
SH3BGRL WILD-TYPE	59	102	78

'SH3BGRL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0661 (Fisher's exact test), Q value = 1

Table S1913. Gene #176: 'SH3BGRL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
SH3BGRL MUTATED	4	2	0
SH3BGRL WILD-TYPE	74	69	91

'SH3BGRL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S1914. Gene #176: 'SH3BGRL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
SH3BGRL MUTATED	1	1	0	4
SH3BGRL WILD-TYPE	45	56	66	67

'MLH3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S1915. Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
MLH3 MUTATED	1	2	1	0
MLH3 WILD-TYPE	11	16	10	10

'MLH3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0477 (Fisher's exact test), Q value = 1

Table S1916. Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
MLH3 MUTATED	2	0	2	0	0
MLH3 WILD-TYPE	10	10	5	7	15

Figure S252. Get High-res Image Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MLH3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0283 (Fisher's exact test), Q value = 1

Table S1917. Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
MLH3 MUTATED	16	0	0	1	0
MLH3 WILD-TYPE	140	23	54	6	2

Figure S253. Get High-res Image Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MLH3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1918. Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
MLH3 MUTATED	3	2	4
MLH3 WILD-TYPE	40	37	49

'MLH3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 1

Table S1919. Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
MLH3 MUTATED	6	4	1	1	1	2
MLH3 WILD-TYPE	33	32	36	9	39	22

'MLH3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1920. Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
MLH3 MUTATED	6	5	3	1
MLH3 WILD-TYPE	59	59	37	16

'MLH3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S1921. Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
MLH3 MUTATED	6	5	6
MLH3 WILD-TYPE	73	80	75

'MLH3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S1922. Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
MLH3 MUTATED	2	8	7
MLH3 WILD-TYPE	57	99	72

'MLH3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S1923. Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
MLH3 MUTATED	7	3	6
MLH3 WILD-TYPE	71	68	85

'MLH3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S1924. Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
MLH3 MUTATED	3	4	3	6
MLH3 WILD-TYPE	43	53	63	65

'MLH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S1925. Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
MLH3 MUTATED	5	2	1
MLH3 WILD-TYPE	50	33	25

'MLH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1926. Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
MLH3 MUTATED	3	3	2
MLH3 WILD-TYPE	40	43	25

'CCDC150 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S1927. Gene #178: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
CCDC150 MUTATED	11	0	0	0	0
CCDC150 WILD-TYPE	145	23	54	7	2

'CCDC150 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 1

Table S1928. Gene #178: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
CCDC150 MUTATED	2	1	6
CCDC150 WILD-TYPE	41	38	47

'CCDC150 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S1929. Gene #178: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
CCDC150 MUTATED	4	4	2	1	0	1
CCDC150 WILD-TYPE	35	32	35	9	40	23

'CCDC150 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 1

Table S1930. Gene #178: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
CCDC150 MUTATED	7	1	3	1
CCDC150 WILD-TYPE	58	63	37	16

'CCDC150 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S1931. Gene #178: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
CCDC150 MUTATED	4	3	5
CCDC150 WILD-TYPE	75	82	76

'CCDC150 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S1932. Gene #178: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
CCDC150 MUTATED	1	5	6
CCDC150 WILD-TYPE	58	102	73

'CCDC150 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S1933. Gene #178: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
CCDC150 MUTATED	3	3	5
CCDC150 WILD-TYPE	75	68	86

'CCDC150 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S1934. Gene #178: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
CCDC150 MUTATED	1	3	2	5
CCDC150 WILD-TYPE	45	54	64	66

'CCDC150 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S1935. Gene #178: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
CCDC150 MUTATED	4	3	1
CCDC150 WILD-TYPE	51	32	25

'CCDC150 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S1936. Gene #178: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
CCDC150 MUTATED	4	2	2
CCDC150 WILD-TYPE	39	44	25

'NT5C3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S1937. Gene #179: 'NT5C3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
NT5C3 MUTATED	2	1	1	0
NT5C3 WILD-TYPE	10	17	10	10

'NT5C3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.091 (Fisher's exact test), Q value = 1

Table S1938. Gene #179: 'NT5C3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
NT5C3 MUTATED	1	0	2	1	0
NT5C3 WILD-TYPE	11	10	5	6	15

'NT5C3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S1939. Gene #179: 'NT5C3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
NT5C3 MUTATED	7	0	0	0	0
NT5C3 WILD-TYPE	149	23	54	7	2

'NT5C3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S1940. Gene #179: 'NT5C3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
NT5C3 MUTATED	2	2	0	1	1	0
NT5C3 WILD-TYPE	37	34	37	9	39	24

'NT5C3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S1941. Gene #179: 'NT5C3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
NT5C3 MUTATED	2	3	1	0
NT5C3 WILD-TYPE	63	61	39	17

'NT5C3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S1942. Gene #179: 'NT5C3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
NT5C3 MUTATED	3	3	1
NT5C3 WILD-TYPE	76	82	80

'NT5C3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S1943. Gene #179: 'NT5C3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
NT5C3 MUTATED	1	5	1
NT5C3 WILD-TYPE	58	102	78

'NT5C3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.067 (Fisher's exact test), Q value = 1

Table S1944. Gene #179: 'NT5C3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
NT5C3 MUTATED	4	2	0
NT5C3 WILD-TYPE	74	69	91

'NT5C3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S1945. Gene #179: 'NT5C3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
NT5C3 MUTATED	1	3	0	2
NT5C3 WILD-TYPE	45	54	66	69

'APAF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S1946. Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
APAF1 MUTATED	3	2	0	0
APAF1 WILD-TYPE	9	16	11	10

'APAF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0912 (Fisher's exact test), Q value = 1

Table S1947. Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
APAF1 MUTATED	2	0	1	2	0
APAF1 WILD-TYPE	10	10	6	5	15

'APAF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0343 (Fisher's exact test), Q value = 1

Table S1948. Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
APAF1 MUTATED	10	1	0	2	0
APAF1 WILD-TYPE	146	22	54	5	2

Figure S254. Get High-res Image Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'APAF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S1949. Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
APAF1 MUTATED	0	0	3
APAF1 WILD-TYPE	43	39	50

'APAF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S1950. Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
APAF1 MUTATED	1	4	2	1	2	1
APAF1 WILD-TYPE	38	32	35	9	38	23

'APAF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S1951. Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
APAF1 MUTATED	3	4	3	1
APAF1 WILD-TYPE	62	60	37	16

'APAF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0952 (Fisher's exact test), Q value = 1

Table S1952. Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
APAF1 MUTATED	4	7	1
APAF1 WILD-TYPE	75	78	80

'APAF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0116 (Fisher's exact test), Q value = 1

Table S1953. Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
APAF1 MUTATED	0	10	2
APAF1 WILD-TYPE	59	97	77

Figure S255. Get High-res Image Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'APAF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.055 (Fisher's exact test), Q value = 1

Table S1954. Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
APAF1 MUTATED	8	2	2
APAF1 WILD-TYPE	70	69	89

'APAF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00962 (Fisher's exact test), Q value = 1

Table S1955. Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
APAF1 MUTATED	4	1	0	7
APAF1 WILD-TYPE	42	56	66	64

Figure S256. Get High-res Image Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'APAF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 1

Table S1956. Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
APAF1 MUTATED	3	0	0
APAF1 WILD-TYPE	52	35	26

'APAF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S1957. Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
APAF1 MUTATED	2	1	0
APAF1 WILD-TYPE	41	45	27

'KANK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0325 (Fisher's exact test), Q value = 1

Table S1958. Gene #181: 'KANK4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
KANK4 MUTATED	7	1	0	2	0
KANK4 WILD-TYPE	149	22	54	5	2

Figure S257. Get High-res Image Gene #181: 'KANK4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KANK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S1959. Gene #181: 'KANK4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
KANK4 MUTATED	2	1	5
KANK4 WILD-TYPE	41	38	48

'KANK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.042 (Fisher's exact test), Q value = 1

Table S1960. Gene #181: 'KANK4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
KANK4 MUTATED	4	5	1	0	0	0
KANK4 WILD-TYPE	35	31	36	10	40	24

Figure S258. Get High-res Image Gene #181: 'KANK4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'KANK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S1961. Gene #181: 'KANK4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
KANK4 MUTATED	6	4	0	0
KANK4 WILD-TYPE	59	60	40	17

'KANK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S1962. Gene #181: 'KANK4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
KANK4 MUTATED	6	3	2
KANK4 WILD-TYPE	73	82	79

'KANK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S1963. Gene #181: 'KANK4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
KANK4 MUTATED	1	8	2
KANK4 WILD-TYPE	58	99	77

'KANK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S1964. Gene #181: 'KANK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
KANK4 MUTATED	4	3	3
KANK4 WILD-TYPE	74	68	88

'KANK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0487 (Fisher's exact test), Q value = 1

Table S1965. Gene #181: 'KANK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
KANK4 MUTATED	0	1	2	7
KANK4 WILD-TYPE	46	56	64	64

Figure S259. Get High-res Image Gene #181: 'KANK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KANK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S1966. Gene #181: 'KANK4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
KANK4 MUTATED	3	2	2
KANK4 WILD-TYPE	52	33	24

'KANK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S1967. Gene #181: 'KANK4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
KANK4 MUTATED	1	2	4
KANK4 WILD-TYPE	42	44	23

'NRIP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S1968. Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
NRIP1 MUTATED	2	1	0	0
NRIP1 WILD-TYPE	10	17	11	10

'NRIP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0775 (Fisher's exact test), Q value = 1

Table S1969. Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
NRIP1 MUTATED	1	0	0	2	0
NRIP1 WILD-TYPE	11	10	7	5	15

'NRIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0697 (Fisher's exact test), Q value = 1

Table S1970. Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
NRIP1 MUTATED	10	0	1	2	0
NRIP1 WILD-TYPE	146	23	53	5	2

'NRIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S1971. Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
NRIP1 MUTATED	3	1	3
NRIP1 WILD-TYPE	40	38	50

'NRIP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S1972. Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
NRIP1 MUTATED	3	4	2	1	1	0
NRIP1 WILD-TYPE	36	32	35	9	39	24

'NRIP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S1973. Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
NRIP1 MUTATED	4	4	3	0
NRIP1 WILD-TYPE	61	60	37	17

'NRIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S1974. Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
NRIP1 MUTATED	6	5	2
NRIP1 WILD-TYPE	73	80	79

'NRIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S1975. Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
NRIP1 MUTATED	2	9	2
NRIP1 WILD-TYPE	57	98	77

'NRIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S1976. Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
NRIP1 MUTATED	7	4	2
NRIP1 WILD-TYPE	71	67	89

'NRIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0264 (Fisher's exact test), Q value = 1

Table S1977. Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
NRIP1 MUTATED	0	5	1	7
NRIP1 WILD-TYPE	46	52	65	64

Figure S260. Get High-res Image Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NRIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S1978. Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
NRIP1 MUTATED	2	2	1
NRIP1 WILD-TYPE	53	33	25

'NRIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S1979. Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
NRIP1 MUTATED	2	1	2
NRIP1 WILD-TYPE	41	45	25

'GTF2H1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S1980. Gene #183: 'GTF2H1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
GTF2H1 MUTATED	1	2	0	0
GTF2H1 WILD-TYPE	11	16	11	10

'GTF2H1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S1981. Gene #183: 'GTF2H1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
GTF2H1 MUTATED	2	0	1	0	0
GTF2H1 WILD-TYPE	10	10	6	7	15

'GTF2H1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S1982. Gene #183: 'GTF2H1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
GTF2H1 MUTATED	8	0	0	0	0
GTF2H1 WILD-TYPE	148	23	54	7	2

'GTF2H1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S1983. Gene #183: 'GTF2H1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
GTF2H1 MUTATED	1	0	2
GTF2H1 WILD-TYPE	42	39	51

'GTF2H1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S1984. Gene #183: 'GTF2H1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
GTF2H1 MUTATED	2	1	2	0	1	2
GTF2H1 WILD-TYPE	37	35	35	10	39	22

'GTF2H1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S1985. Gene #183: 'GTF2H1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
GTF2H1 MUTATED	1	3	2	2
GTF2H1 WILD-TYPE	64	61	38	15

'GTF2H1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S1986. Gene #183: 'GTF2H1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
GTF2H1 MUTATED	2	5	1
GTF2H1 WILD-TYPE	77	80	80

'GTF2H1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.659 (Fisher's exact test), Q value = 1

Table S1987. Gene #183: 'GTF2H1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
GTF2H1 MUTATED	1	5	2
GTF2H1 WILD-TYPE	58	102	77

'GTF2H1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S1988. Gene #183: 'GTF2H1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
GTF2H1 MUTATED	4	2	2
GTF2H1 WILD-TYPE	74	69	89

'GTF2H1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 1

Table S1989. Gene #183: 'GTF2H1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
GTF2H1 MUTATED	3	3	0	2
GTF2H1 WILD-TYPE	43	54	66	69

'GTF2H1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S1990. Gene #183: 'GTF2H1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
GTF2H1 MUTATED	2	0	1
GTF2H1 WILD-TYPE	53	35	25

'GTF2H1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S1991. Gene #183: 'GTF2H1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
GTF2H1 MUTATED	2	0	1
GTF2H1 WILD-TYPE	41	46	26

'ASXL2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S1992. Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
ASXL2 MUTATED	2	1	0	0
ASXL2 WILD-TYPE	10	17	11	10

'ASXL2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S1993. Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
ASXL2 MUTATED	1	0	1	1	0
ASXL2 WILD-TYPE	11	10	6	6	15

'ASXL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0642 (Fisher's exact test), Q value = 1

Table S1994. Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
ASXL2 MUTATED	11	0	1	2	0
ASXL2 WILD-TYPE	145	23	53	5	2

'ASXL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S1995. Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
ASXL2 MUTATED	2	1	5
ASXL2 WILD-TYPE	41	38	48

'ASXL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S1996. Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
ASXL2 MUTATED	3	4	1	0	2	1
ASXL2 WILD-TYPE	36	32	36	10	38	23

'ASXL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S1997. Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
ASXL2 MUTATED	3	6	1	1
ASXL2 WILD-TYPE	62	58	39	16

'ASXL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S1998. Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
ASXL2 MUTATED	6	6	2
ASXL2 WILD-TYPE	73	79	79

'ASXL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 1

Table S1999. Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
ASXL2 MUTATED	2	9	3
ASXL2 WILD-TYPE	57	98	76

'ASXL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S2000. Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
ASXL2 MUTATED	6	4	3
ASXL2 WILD-TYPE	72	67	88

'ASXL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0154 (Fisher's exact test), Q value = 1

Table S2001. Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
ASXL2 MUTATED	3	2	0	8
ASXL2 WILD-TYPE	43	55	66	63

Figure S261. Get High-res Image Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ASXL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S2002. Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
ASXL2 MUTATED	2	2	3
ASXL2 WILD-TYPE	53	33	23

'ASXL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S2003. Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
ASXL2 MUTATED	3	1	3
ASXL2 WILD-TYPE	40	45	24

'ZNF611 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2004. Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
ZNF611 MUTATED	1	1	1	0
ZNF611 WILD-TYPE	11	17	10	10

'ZNF611 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0791 (Fisher's exact test), Q value = 1

Table S2005. Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
ZNF611 MUTATED	1	0	2	0	0
ZNF611 WILD-TYPE	11	10	5	7	15

'ZNF611 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S2006. Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
ZNF611 MUTATED	11	0	1	0	0
ZNF611 WILD-TYPE	145	23	53	7	2

'ZNF611 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S2007. Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
ZNF611 MUTATED	3	0	5
ZNF611 WILD-TYPE	40	39	48

'ZNF611 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S2008. Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
ZNF611 MUTATED	5	2	2	1	0	1
ZNF611 WILD-TYPE	34	34	35	9	40	23

'ZNF611 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2009. Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
ZNF611 MUTATED	4	4	2	1
ZNF611 WILD-TYPE	61	60	38	16

'ZNF611 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 1

Table S2010. Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
ZNF611 MUTATED	5	5	2
ZNF611 WILD-TYPE	74	80	79

'ZNF611 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S2011. Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
ZNF611 MUTATED	2	7	3
ZNF611 WILD-TYPE	57	100	76

'ZNF611 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S2012. Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
ZNF611 MUTATED	6	3	3
ZNF611 WILD-TYPE	72	68	88

'ZNF611 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0655 (Fisher's exact test), Q value = 1

Table S2013. Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
ZNF611 MUTATED	2	4	0	6
ZNF611 WILD-TYPE	44	53	66	65

'ZNF611 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S2014. Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
ZNF611 MUTATED	3	1	2
ZNF611 WILD-TYPE	52	34	24

'ZNF611 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0126 (Fisher's exact test), Q value = 1

Table S2015. Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
ZNF611 MUTATED	2	0	4
ZNF611 WILD-TYPE	41	46	23

Figure S262. Get High-res Image Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SUN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 1

Table S2016. Gene #186: 'SUN3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
SUN3 MUTATED	6	0	0	0	0
SUN3 WILD-TYPE	150	23	54	7	2

'SUN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S2017. Gene #186: 'SUN3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
SUN3 MUTATED	2	2	0	1	1	0
SUN3 WILD-TYPE	37	34	37	9	39	24

'SUN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S2018. Gene #186: 'SUN3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
SUN3 MUTATED	2	3	1	0
SUN3 WILD-TYPE	63	61	39	17

'SUN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S2019. Gene #186: 'SUN3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
SUN3 MUTATED	2	4	0
SUN3 WILD-TYPE	77	81	81

'SUN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0211 (Fisher's exact test), Q value = 1

Table S2020. Gene #186: 'SUN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
SUN3 MUTATED	0	6	0
SUN3 WILD-TYPE	59	101	79

Figure S263. Get High-res Image Gene #186: 'SUN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SUN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0181 (Fisher's exact test), Q value = 1

Table S2021. Gene #186: 'SUN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
SUN3 MUTATED	5	1	0
SUN3 WILD-TYPE	73	70	91

Figure S264. Get High-res Image Gene #186: 'SUN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SUN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S2022. Gene #186: 'SUN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
SUN3 MUTATED	1	2	0	3
SUN3 WILD-TYPE	45	55	66	68

'ZNF195 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0248 (Fisher's exact test), Q value = 1

Table S2023. Gene #187: 'ZNF195 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
ZNF195 MUTATED	9	0	0	2	0
ZNF195 WILD-TYPE	147	23	54	5	2

Figure S265. Get High-res Image Gene #187: 'ZNF195 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF195 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S2024. Gene #187: 'ZNF195 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
ZNF195 MUTATED	1	0	4
ZNF195 WILD-TYPE	42	39	49

'ZNF195 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0979 (Fisher's exact test), Q value = 1

Table S2025. Gene #187: 'ZNF195 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
ZNF195 MUTATED	2	5	1	1	0	1
ZNF195 WILD-TYPE	37	31	36	9	40	23

'ZNF195 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2026. Gene #187: 'ZNF195 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
ZNF195 MUTATED	4	3	2	1
ZNF195 WILD-TYPE	61	61	38	16

'ZNF195 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S2027. Gene #187: 'ZNF195 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
ZNF195 MUTATED	5	5	1
ZNF195 WILD-TYPE	74	80	80

'ZNF195 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0291 (Fisher's exact test), Q value = 1

Table S2028. Gene #187: 'ZNF195 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
ZNF195 MUTATED	0	9	2
ZNF195 WILD-TYPE	59	98	77

Figure S266. Get High-res Image Gene #187: 'ZNF195 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF195 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S2029. Gene #187: 'ZNF195 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
ZNF195 MUTATED	5	3	2
ZNF195 WILD-TYPE	73	68	89

'ZNF195 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S2030. Gene #187: 'ZNF195 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
ZNF195 MUTATED	2	3	0	5
ZNF195 WILD-TYPE	44	54	66	66

'ZNF195 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S2031. Gene #187: 'ZNF195 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
ZNF195 MUTATED	2	0	1
ZNF195 WILD-TYPE	53	35	25

'ZNF195 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S2032. Gene #187: 'ZNF195 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
ZNF195 MUTATED	2	0	1
ZNF195 WILD-TYPE	41	46	26

'EXOSC9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S2033. Gene #188: 'EXOSC9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
EXOSC9 MUTATED	1	2	0	0
EXOSC9 WILD-TYPE	11	16	11	10

'EXOSC9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S2034. Gene #188: 'EXOSC9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
EXOSC9 MUTATED	2	0	1	0	0
EXOSC9 WILD-TYPE	10	10	6	7	15

'EXOSC9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 1

Table S2035. Gene #188: 'EXOSC9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
EXOSC9 MUTATED	9	0	0	1	0
EXOSC9 WILD-TYPE	147	23	54	6	2

'EXOSC9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S2036. Gene #188: 'EXOSC9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
EXOSC9 MUTATED	0	0	3
EXOSC9 WILD-TYPE	43	39	50

'EXOSC9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S2037. Gene #188: 'EXOSC9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
EXOSC9 MUTATED	2	3	2	0	0	1
EXOSC9 WILD-TYPE	37	33	35	10	40	23

'EXOSC9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S2038. Gene #188: 'EXOSC9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
EXOSC9 MUTATED	4	1	2	1
EXOSC9 WILD-TYPE	61	63	38	16

'EXOSC9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S2039. Gene #188: 'EXOSC9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
EXOSC9 MUTATED	3	5	2
EXOSC9 WILD-TYPE	76	80	79

'EXOSC9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.065 (Fisher's exact test), Q value = 1

Table S2040. Gene #188: 'EXOSC9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
EXOSC9 MUTATED	0	8	2
EXOSC9 WILD-TYPE	59	99	77

'EXOSC9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S2041. Gene #188: 'EXOSC9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
EXOSC9 MUTATED	4	2	3
EXOSC9 WILD-TYPE	74	69	88

'EXOSC9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S2042. Gene #188: 'EXOSC9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
EXOSC9 MUTATED	1	3	1	4
EXOSC9 WILD-TYPE	45	54	65	67

'MFN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S2043. Gene #189: 'MFN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
MFN2 MUTATED	8	0	0	1	0
MFN2 WILD-TYPE	148	23	54	6	2

'MFN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S2044. Gene #189: 'MFN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
MFN2 MUTATED	1	2	3
MFN2 WILD-TYPE	42	37	50

'MFN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S2045. Gene #189: 'MFN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
MFN2 MUTATED	1	2	0	0	3	1
MFN2 WILD-TYPE	38	34	37	10	37	23

'MFN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S2046. Gene #189: 'MFN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
MFN2 MUTATED	3	3	0	1
MFN2 WILD-TYPE	62	61	40	16

'MFN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S2047. Gene #189: 'MFN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
MFN2 MUTATED	3	4	2
MFN2 WILD-TYPE	76	81	79

'MFN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S2048. Gene #189: 'MFN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
MFN2 MUTATED	0	6	3
MFN2 WILD-TYPE	59	101	76

'MFN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0362 (Fisher's exact test), Q value = 1

Table S2049. Gene #189: 'MFN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
MFN2 MUTATED	6	0	3
MFN2 WILD-TYPE	72	71	88

Figure S267. Get High-res Image Gene #189: 'MFN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MFN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S2050. Gene #189: 'MFN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
MFN2 MUTATED	1	1	1	6
MFN2 WILD-TYPE	45	56	65	65

'MFN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S2051. Gene #189: 'MFN2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
MFN2 MUTATED	3	0	2
MFN2 WILD-TYPE	52	35	24

'MFN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S2052. Gene #189: 'MFN2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
MFN2 MUTATED	3	1	1
MFN2 WILD-TYPE	40	45	26

'LIMA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S2053. Gene #190: 'LIMA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
LIMA1 MUTATED	6	0	1	1	0
LIMA1 WILD-TYPE	150	23	53	6	2

'LIMA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S2054. Gene #190: 'LIMA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
LIMA1 MUTATED	1	0	3
LIMA1 WILD-TYPE	42	39	50

'LIMA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S2055. Gene #190: 'LIMA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
LIMA1 MUTATED	1	2	1	1	1	2
LIMA1 WILD-TYPE	38	34	36	9	39	22

'LIMA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S2056. Gene #190: 'LIMA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
LIMA1 MUTATED	1	4	2	1
LIMA1 WILD-TYPE	64	60	38	16

'LIMA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0257 (Fisher's exact test), Q value = 1

Table S2057. Gene #190: 'LIMA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
LIMA1 MUTATED	2	6	0
LIMA1 WILD-TYPE	77	79	81

Figure S268. Get High-res Image Gene #190: 'LIMA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'LIMA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S2058. Gene #190: 'LIMA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
LIMA1 MUTATED	1	6	1
LIMA1 WILD-TYPE	58	101	78

'LIMA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S2059. Gene #190: 'LIMA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
LIMA1 MUTATED	4	2	2
LIMA1 WILD-TYPE	74	69	89

'LIMA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S2060. Gene #190: 'LIMA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
LIMA1 MUTATED	2	2	0	4
LIMA1 WILD-TYPE	44	55	66	67

'LIMA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S2061. Gene #190: 'LIMA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
LIMA1 MUTATED	1	1	1
LIMA1 WILD-TYPE	54	34	25

'LIMA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S2062. Gene #190: 'LIMA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
LIMA1 MUTATED	1	0	2
LIMA1 WILD-TYPE	42	46	25

'PTPN12 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0567 (Fisher's exact test), Q value = 1

Table S2063. Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
PTPN12 MUTATED	3	0	1	0
PTPN12 WILD-TYPE	9	18	10	10

'PTPN12 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 1

Table S2064. Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
PTPN12 MUTATED	0	0	2	1	1
PTPN12 WILD-TYPE	12	10	5	6	14

'PTPN12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 1

Table S2065. Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
PTPN12 MUTATED	8	1	0	1	0
PTPN12 WILD-TYPE	148	22	54	6	2

'PTPN12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S2066. Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
PTPN12 MUTATED	1	0	2
PTPN12 WILD-TYPE	42	39	51

'PTPN12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00176 (Fisher's exact test), Q value = 1

Table S2067. Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
PTPN12 MUTATED	2	2	1	4	0	1
PTPN12 WILD-TYPE	37	34	36	6	40	23

Figure S269. Get High-res Image Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'PTPN12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0959 (Fisher's exact test), Q value = 1

Table S2068. Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
PTPN12 MUTATED	1	3	5	1
PTPN12 WILD-TYPE	64	61	35	16

'PTPN12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 1

Table S2069. Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
PTPN12 MUTATED	2	6	2
PTPN12 WILD-TYPE	77	79	79

'PTPN12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S2070. Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
PTPN12 MUTATED	1	6	3
PTPN12 WILD-TYPE	58	101	76

'PTPN12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2071. Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
PTPN12 MUTATED	3	3	4
PTPN12 WILD-TYPE	75	68	87

'PTPN12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S2072. Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
PTPN12 MUTATED	2	3	3	2
PTPN12 WILD-TYPE	44	54	63	69

'PTPN12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2073. Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
PTPN12 MUTATED	2	1	0
PTPN12 WILD-TYPE	53	34	26

'PTPN12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S2074. Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
PTPN12 MUTATED	2	0	1
PTPN12 WILD-TYPE	41	46	26

'MTF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S2075. Gene #192: 'MTF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
MTF2 MUTATED	8	0	0	1	0
MTF2 WILD-TYPE	148	23	54	6	2

'MTF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S2076. Gene #192: 'MTF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
MTF2 MUTATED	1	0	5
MTF2 WILD-TYPE	42	39	48

'MTF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 1

Table S2077. Gene #192: 'MTF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
MTF2 MUTATED	1	3	1	1	0	1
MTF2 WILD-TYPE	38	33	36	9	40	23

'MTF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S2078. Gene #192: 'MTF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
MTF2 MUTATED	2	2	2	1
MTF2 WILD-TYPE	63	62	38	16

'MTF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S2079. Gene #192: 'MTF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
MTF2 MUTATED	4	3	2
MTF2 WILD-TYPE	75	82	79

'MTF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S2080. Gene #192: 'MTF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
MTF2 MUTATED	0	6	3
MTF2 WILD-TYPE	59	101	76

'MTF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S2081. Gene #192: 'MTF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
MTF2 MUTATED	4	1	3
MTF2 WILD-TYPE	74	70	88

'MTF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S2082. Gene #192: 'MTF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
MTF2 MUTATED	1	2	0	5
MTF2 WILD-TYPE	45	55	66	66

'MTF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S2083. Gene #192: 'MTF2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
MTF2 MUTATED	2	0	2
MTF2 WILD-TYPE	53	35	24

'MTF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S2084. Gene #192: 'MTF2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
MTF2 MUTATED	2	1	1
MTF2 WILD-TYPE	41	45	26

'MLL4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S2085. Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
MLL4 MUTATED	2	1	1	0
MLL4 WILD-TYPE	10	17	10	10

'MLL4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0917 (Fisher's exact test), Q value = 1

Table S2086. Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
MLL4 MUTATED	1	0	2	1	0
MLL4 WILD-TYPE	11	10	5	6	15

'MLL4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00025 (Fisher's exact test), Q value = 0.53

Table S2087. Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
MLL4 MUTATED	27	0	0	2	0
MLL4 WILD-TYPE	129	23	54	5	2

Figure S270. Get High-res Image Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MLL4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0389 (Fisher's exact test), Q value = 1

Table S2088. Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
MLL4 MUTATED	4	2	12
MLL4 WILD-TYPE	39	37	41

Figure S271. Get High-res Image Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MLL4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 1

Table S2089. Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
MLL4 MUTATED	8	4	2	1	4	1
MLL4 WILD-TYPE	31	32	35	9	36	23

'MLL4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S2090. Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
MLL4 MUTATED	8	8	3	1
MLL4 WILD-TYPE	57	56	37	16

'MLL4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S2091. Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
MLL4 MUTATED	7	13	10
MLL4 WILD-TYPE	72	72	71

'MLL4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0427 (Fisher's exact test), Q value = 1

Table S2092. Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
MLL4 MUTATED	2	16	12
MLL4 WILD-TYPE	57	91	67

Figure S272. Get High-res Image Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MLL4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 1

Table S2093. Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
MLL4 MUTATED	10	4	14
MLL4 WILD-TYPE	68	67	77

'MLL4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0172 (Fisher's exact test), Q value = 1

Table S2094. Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
MLL4 MUTATED	3	4	5	16
MLL4 WILD-TYPE	43	53	61	55

Figure S273. Get High-res Image Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MLL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S2095. Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
MLL4 MUTATED	9	3	3
MLL4 WILD-TYPE	46	32	23

'MLL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S2096. Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
MLL4 MUTATED	5	5	5
MLL4 WILD-TYPE	38	41	22

'C1ORF101 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S2097. Gene #194: 'C1ORF101 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
C1ORF101 MUTATED	1	1	2	0
C1ORF101 WILD-TYPE	11	17	9	10

'C1ORF101 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S2098. Gene #194: 'C1ORF101 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
C1ORF101 MUTATED	1	0	2	0	1
C1ORF101 WILD-TYPE	11	10	5	7	14

'C1ORF101 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S2099. Gene #194: 'C1ORF101 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
C1ORF101 MUTATED	10	1	0	1	0
C1ORF101 WILD-TYPE	146	22	54	6	2

'C1ORF101 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S2100. Gene #194: 'C1ORF101 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
C1ORF101 MUTATED	2	1	1
C1ORF101 WILD-TYPE	41	38	52

'C1ORF101 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 1

Table S2101. Gene #194: 'C1ORF101 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
C1ORF101 MUTATED	3	2	1	2	1	0
C1ORF101 WILD-TYPE	36	34	36	8	39	24

'C1ORF101 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S2102. Gene #194: 'C1ORF101 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
C1ORF101 MUTATED	3	4	2	0
C1ORF101 WILD-TYPE	62	60	38	17

'C1ORF101 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S2103. Gene #194: 'C1ORF101 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
C1ORF101 MUTATED	6	3	3
C1ORF101 WILD-TYPE	73	82	78

'C1ORF101 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S2104. Gene #194: 'C1ORF101 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
C1ORF101 MUTATED	2	7	3
C1ORF101 WILD-TYPE	57	100	76

'C1ORF101 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S2105. Gene #194: 'C1ORF101 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
C1ORF101 MUTATED	5	4	2
C1ORF101 WILD-TYPE	73	67	89

'C1ORF101 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S2106. Gene #194: 'C1ORF101 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
C1ORF101 MUTATED	2	3	2	4
C1ORF101 WILD-TYPE	44	54	64	67

'C1ORF101 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S2107. Gene #194: 'C1ORF101 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
C1ORF101 MUTATED	0	2	1
C1ORF101 WILD-TYPE	55	33	25

'C1ORF101 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S2108. Gene #194: 'C1ORF101 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
C1ORF101 MUTATED	1	0	2
C1ORF101 WILD-TYPE	42	46	25

'MBOAT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S2109. Gene #195: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
MBOAT2 MUTATED	5	0	1	1	0
MBOAT2 WILD-TYPE	151	23	53	6	2

'MBOAT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S2110. Gene #195: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
MBOAT2 MUTATED	1	1	3
MBOAT2 WILD-TYPE	42	38	50

'MBOAT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S2111. Gene #195: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
MBOAT2 MUTATED	1	2	2	0	0	0
MBOAT2 WILD-TYPE	38	34	35	10	40	24

'MBOAT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S2112. Gene #195: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
MBOAT2 MUTATED	3	0	2	0
MBOAT2 WILD-TYPE	62	64	38	17

'MBOAT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S2113. Gene #195: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
MBOAT2 MUTATED	4	1	2
MBOAT2 WILD-TYPE	75	84	79

'MBOAT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S2114. Gene #195: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
MBOAT2 MUTATED	1	4	2
MBOAT2 WILD-TYPE	58	103	77

'MBOAT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2115. Gene #195: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
MBOAT2 MUTATED	2	2	2
MBOAT2 WILD-TYPE	76	69	89

'MBOAT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S2116. Gene #195: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
MBOAT2 MUTATED	0	2	1	3
MBOAT2 WILD-TYPE	46	55	65	68

'MBOAT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S2117. Gene #195: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
MBOAT2 MUTATED	2	2	0
MBOAT2 WILD-TYPE	53	33	26

'MBOAT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S2118. Gene #195: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
MBOAT2 MUTATED	2	1	1
MBOAT2 WILD-TYPE	41	45	26

'CHD4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0989 (Fisher's exact test), Q value = 1

Table S2119. Gene #196: 'CHD4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
CHD4 MUTATED	1	6	0	2
CHD4 WILD-TYPE	11	12	11	8

'CHD4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S2120. Gene #196: 'CHD4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
CHD4 MUTATED	2	4	0	1	2
CHD4 WILD-TYPE	10	6	7	6	13

'CHD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S2121. Gene #196: 'CHD4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
CHD4 MUTATED	25	1	7	2	0
CHD4 WILD-TYPE	131	22	47	5	2

'CHD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S2122. Gene #196: 'CHD4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
CHD4 MUTATED	7	4	8
CHD4 WILD-TYPE	36	35	45

'CHD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.983 (Fisher's exact test), Q value = 1

Table S2123. Gene #196: 'CHD4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
CHD4 MUTATED	7	6	5	1	5	3
CHD4 WILD-TYPE	32	30	32	9	35	21

'CHD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S2124. Gene #196: 'CHD4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
CHD4 MUTATED	11	9	3	4
CHD4 WILD-TYPE	54	55	37	13

'CHD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S2125. Gene #196: 'CHD4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
CHD4 MUTATED	15	10	10
CHD4 WILD-TYPE	64	75	71

'CHD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.917 (Fisher's exact test), Q value = 1

Table S2126. Gene #196: 'CHD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
CHD4 MUTATED	9	16	10
CHD4 WILD-TYPE	50	91	69

'CHD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S2127. Gene #196: 'CHD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
CHD4 MUTATED	12	9	9
CHD4 WILD-TYPE	66	62	82

'CHD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S2128. Gene #196: 'CHD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
CHD4 MUTATED	5	9	7	9
CHD4 WILD-TYPE	41	48	59	62

'CHD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S2129. Gene #196: 'CHD4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
CHD4 MUTATED	10	4	2
CHD4 WILD-TYPE	45	31	24

'CHD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S2130. Gene #196: 'CHD4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
CHD4 MUTATED	8	4	4
CHD4 WILD-TYPE	35	42	23

'SESN3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 1

Table S2131. Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	12	18	11	10
SESN3 MUTATED	2	2	0	0
SESN3 WILD-TYPE	10	16	11	10

'SESN3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S2132. Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	12	10	7	7	15
SESN3 MUTATED	2	0	1	1	0
SESN3 WILD-TYPE	10	10	6	6	15

'SESN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0652 (Fisher's exact test), Q value = 1

Table S2133. Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	156	23	54	7	2
SESN3 MUTATED	12	0	0	1	0
SESN3 WILD-TYPE	144	23	54	6	2

'SESN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 1

Table S2134. Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	39	53
SESN3 MUTATED	1	1	5
SESN3 WILD-TYPE	42	38	48

'SESN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S2135. Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	39	36	37	10	40	24
SESN3 MUTATED	3	2	3	1	1	0
SESN3 WILD-TYPE	36	34	34	9	39	24

'SESN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S2136. Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	65	64	40	17
SESN3 MUTATED	3	3	4	0
SESN3 WILD-TYPE	62	61	36	17

'SESN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S2137. Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	79	85	81
SESN3 MUTATED	3	6	4
SESN3 WILD-TYPE	76	79	77

'SESN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0487 (Fisher's exact test), Q value = 1

Table S2138. Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	59	107	79
SESN3 MUTATED	0	9	4
SESN3 WILD-TYPE	59	98	75

Figure S274. Get High-res Image Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SESN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S2139. Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	71	91
SESN3 MUTATED	5	1	6
SESN3 WILD-TYPE	73	70	85

'SESN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S2140. Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	46	57	66	71
SESN3 MUTATED	1	3	2	6
SESN3 WILD-TYPE	45	54	64	65

'SESN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 1

Table S2141. Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	55	35	26
SESN3 MUTATED	4	0	2
SESN3 WILD-TYPE	51	35	24

'SESN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2142. Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	43	46	27
SESN3 MUTATED	2	3	1
SESN3 WILD-TYPE	41	43	26