[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"         "-nVNozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oTUCEC-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/UCEC-TP/10667975/UCEC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/UCEC-TP/10013834/transformed.cor.cli.txt"

nPatients in clinical file=550, in cluster file=524, common to both=524
[1]  99 524
[1] "AMP PEAK  1(1P35.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE 
                           55                           469 
  AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE 
                           55                           469 
[1] "AMP PEAK  2(1P34.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE 
                           71                           453 
  AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE 
                           71                           453 
[1] "AMP PEAK  3(1P22.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE 
                           92                           432 
  AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE 
                           92                           432 
[1] "AMP PEAK  4(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE 
                          233                           291 
  AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE 
                          233                           291 
[1] "AMP PEAK  5(1Q22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE 
                        247                         277 
  AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE 
                        247                         277 
[1] "AMP PEAK  6(1Q44) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE 
                        213                         311 
  AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE 
                        213                         311 
[1] "AMP PEAK  7(2P24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE 
                          117                           407 
  AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE 
                          117                           407 
[1] "AMP PEAK  8(2Q13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE 
                        114                         410 
  AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE 
                        114                         410 
[1] "AMP PEAK  9(3P25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE 
                           77                           447 
  AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE 
                           77                           447 
[1] "AMP PEAK 10(3P14.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE 
                           61                           463 
  AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE 
                           61                           463 
[1] "AMP PEAK 11(3Q26.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE 
                          167                           357 
  AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE 
                          167                           357 
[1] "AMP PEAK 12(3Q26.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE 
                          156                           368 
  AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE 
                          156                           368 
[1] "AMP PEAK 13(4P16.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE 
                           52                           472 
  AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE 
                           52                           472 
[1] "AMP PEAK 14(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE 
                            83                            441 
  AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE 
                            83                            441 
[1] "AMP PEAK 15(5Q35.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE 
                           54                           470 
  AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE 
                           54                           470 
[1] "AMP PEAK 16(6P24.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE 
                          111                           413 
  AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE 
                          111                           413 
[1] "AMP PEAK 17(6Q25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(6Q25.1) MUTATED AMP PEAK 17(6Q25.1) WILD-TYPE 
                           84                           440 
  AMP PEAK 17(6Q25.1) MUTATED AMP PEAK 17(6Q25.1) WILD-TYPE 
                           84                           440 
[1] "AMP PEAK 18(7Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(7Q22.1) MUTATED AMP PEAK 18(7Q22.1) WILD-TYPE 
                           90                           434 
  AMP PEAK 18(7Q22.1) MUTATED AMP PEAK 18(7Q22.1) WILD-TYPE 
                           90                           434 
[1] "AMP PEAK 19(8P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE 
                           156                            368 
  AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE 
                           156                            368 
[1] "AMP PEAK 20(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE 
                           202                            322 
  AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE 
                           202                            322 
[1] "AMP PEAK 21(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE 
                           208                            316 
  AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE 
                           208                            316 
[1] "AMP PEAK 22(9P24.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE 
                           63                           461 
  AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE 
                           63                           461 
[1] "AMP PEAK 23(9Q34.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE 
                           37                           487 
  AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE 
                           37                           487 
[1] "AMP PEAK 24(10Q22.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE 
                           140                            384 
  AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE 
                           140                            384 
[1] "AMP PEAK 25(11P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE 
                            49                            475 
  AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE 
                            49                            475 
[1] "AMP PEAK 26(11Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE 
                            71                            453 
  AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE 
                            71                            453 
[1] "AMP PEAK 27(11Q14.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE 
                            56                            468 
  AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE 
                            56                            468 
[1] "AMP PEAK 28(12P12.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE 
                            87                            437 
  AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE 
                            87                            437 
[1] "AMP PEAK 29(12Q13.11) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE 
                             85                             439 
  AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE 
                             85                             439 
[1] "AMP PEAK 30(12Q13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE 
                            98                            426 
  AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE 
                            98                            426 
[1] "AMP PEAK 31(13Q34) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE 
                          56                          468 
  AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE 
                          56                          468 
[1] "AMP PEAK 32(14Q24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE 
                            62                            462 
  AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE 
                            62                            462 
[1] "AMP PEAK 33(15Q26.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 33(15Q26.3) MUTATED AMP PEAK 33(15Q26.3) WILD-TYPE 
                            37                            487 
  AMP PEAK 33(15Q26.3) MUTATED AMP PEAK 33(15Q26.3) WILD-TYPE 
                            37                            487 
[1] "AMP PEAK 34(16P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 34(16P11.2) MUTATED AMP PEAK 34(16P11.2) WILD-TYPE 
                            63                            461 
  AMP PEAK 34(16P11.2) MUTATED AMP PEAK 34(16P11.2) WILD-TYPE 
                            63                            461 
[1] "AMP PEAK 35(17Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 35(17Q11.2) MUTATED AMP PEAK 35(17Q11.2) WILD-TYPE 
                            67                            457 
  AMP PEAK 35(17Q11.2) MUTATED AMP PEAK 35(17Q11.2) WILD-TYPE 
                            67                            457 
[1] "AMP PEAK 36(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 36(17Q12) MUTATED AMP PEAK 36(17Q12) WILD-TYPE 
                          71                          453 
  AMP PEAK 36(17Q12) MUTATED AMP PEAK 36(17Q12) WILD-TYPE 
                          71                          453 
[1] "AMP PEAK 37(17Q25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 37(17Q25.1) MUTATED AMP PEAK 37(17Q25.1) WILD-TYPE 
                           100                            424 
  AMP PEAK 37(17Q25.1) MUTATED AMP PEAK 37(17Q25.1) WILD-TYPE 
                           100                            424 
[1] "AMP PEAK 38(18P11.31) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 38(18P11.31) MUTATED AMP PEAK 38(18P11.31) WILD-TYPE 
                             91                             433 
  AMP PEAK 38(18P11.31) MUTATED AMP PEAK 38(18P11.31) WILD-TYPE 
                             91                             433 
[1] "AMP PEAK 39(18Q11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 39(18Q11.2) MUTATED AMP PEAK 39(18Q11.2) WILD-TYPE 
                            67                            457 
  AMP PEAK 39(18Q11.2) MUTATED AMP PEAK 39(18Q11.2) WILD-TYPE 
                            67                            457 
[1] "AMP PEAK 40(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 40(19P13.2) MUTATED AMP PEAK 40(19P13.2) WILD-TYPE 
                            88                            436 
  AMP PEAK 40(19P13.2) MUTATED AMP PEAK 40(19P13.2) WILD-TYPE 
                            88                            436 
[1] "AMP PEAK 41(19P13.12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 41(19P13.12) MUTATED AMP PEAK 41(19P13.12) WILD-TYPE 
                             91                             433 
  AMP PEAK 41(19P13.12) MUTATED AMP PEAK 41(19P13.12) WILD-TYPE 
                             91                             433 
[1] "AMP PEAK 42(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 42(19Q12) MUTATED AMP PEAK 42(19Q12) WILD-TYPE 
                         115                          409 
  AMP PEAK 42(19Q12) MUTATED AMP PEAK 42(19Q12) WILD-TYPE 
                         115                          409 
[1] "AMP PEAK 43(20P13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 43(20P13) MUTATED AMP PEAK 43(20P13) WILD-TYPE 
                         113                          411 
  AMP PEAK 43(20P13) MUTATED AMP PEAK 43(20P13) WILD-TYPE 
                         113                          411 
[1] "AMP PEAK 44(20Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 44(20Q11.21) MUTATED AMP PEAK 44(20Q11.21) WILD-TYPE 
                            142                             382 
  AMP PEAK 44(20Q11.21) MUTATED AMP PEAK 44(20Q11.21) WILD-TYPE 
                            142                             382 
[1] "AMP PEAK 45(20Q13.12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 45(20Q13.12) MUTATED AMP PEAK 45(20Q13.12) WILD-TYPE 
                            145                             379 
  AMP PEAK 45(20Q13.12) MUTATED AMP PEAK 45(20Q13.12) WILD-TYPE 
                            145                             379 
[1] "AMP PEAK 46(20Q13.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 46(20Q13.33) MUTATED AMP PEAK 46(20Q13.33) WILD-TYPE 
                            142                             382 
  AMP PEAK 46(20Q13.33) MUTATED AMP PEAK 46(20Q13.33) WILD-TYPE 
                            142                             382 
[1] "AMP PEAK 47(22Q12.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 47(22Q12.2) MUTATED AMP PEAK 47(22Q12.2) WILD-TYPE 
                            59                            465 
  AMP PEAK 47(22Q12.2) MUTATED AMP PEAK 47(22Q12.2) WILD-TYPE 
                            59                            465 
[1] "AMP PEAK 48(XP11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 48(XP11.23) MUTATED AMP PEAK 48(XP11.23) WILD-TYPE 
                            87                            437 
  AMP PEAK 48(XP11.23) MUTATED AMP PEAK 48(XP11.23) WILD-TYPE 
                            87                            437 
[1] "AMP PEAK 49(XQ28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 49(XQ28) MUTATED AMP PEAK 49(XQ28) WILD-TYPE 
                         89                         435 
  AMP PEAK 49(XQ28) MUTATED AMP PEAK 49(XQ28) WILD-TYPE 
                         89                         435 
[1] "DEL PEAK  1(1P36.21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE 
                            70                            454 
  DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE 
                            70                            454 
[1] "DEL PEAK  2(1P36.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                            82                            442 
  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                            82                            442 
[1] "DEL PEAK  3(2P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                           25                           499 
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                           25                           499 
[1] "DEL PEAK  4(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE 
                           46                           478 
  DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE 
                           46                           478 
[1] "DEL PEAK  5(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                           51                           473 
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                           51                           473 
[1] "DEL PEAK  6(3P14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE 
                           75                           449 
  DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE 
                           75                           449 
[1] "DEL PEAK  7(3Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE 
                            31                            493 
  DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE 
                            31                            493 
[1] "DEL PEAK  8(4P16.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE 
                           91                           433 
  DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE 
                           91                           433 
[1] "DEL PEAK  9(4P15.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE 
                            95                            429 
  DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE 
                            95                            429 
[1] "DEL PEAK 10(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE 
                          102                           422 
  DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE 
                          102                           422 
[1] "DEL PEAK 11(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE 
                          125                           399 
  DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE 
                          125                           399 
[1] "DEL PEAK 12(5Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(5Q11.2) MUTATED DEL PEAK 12(5Q11.2) WILD-TYPE 
                          106                           418 
  DEL PEAK 12(5Q11.2) MUTATED DEL PEAK 12(5Q11.2) WILD-TYPE 
                          106                           418 
[1] "DEL PEAK 13(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                         45                         479 
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                         45                         479 
[1] "DEL PEAK 14(7P22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE 
                           70                           454 
  DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE 
                           70                           454 
[1] "DEL PEAK 15(7Q11.22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE 
                            41                            483 
  DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE 
                            41                            483 
[1] "DEL PEAK 16(7Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE 
                           53                           471 
  DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE 
                           53                           471 
[1] "DEL PEAK 17(7Q36.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE 
                           62                           462 
  DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE 
                           62                           462 
[1] "DEL PEAK 18(8P23.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                          113                           411 
  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                          113                           411 
[1] "DEL PEAK 19(8P21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE 
                          111                           413 
  DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE 
                          111                           413 
[1] "DEL PEAK 20(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE 
                         75                         449 
  DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE 
                         75                         449 
[1] "DEL PEAK 21(9Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE 
                          123                           401 
  DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE 
                          123                           401 
[1] "DEL PEAK 22(9Q34.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE 
                          128                           396 
  DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE 
                          128                           396 
[1] "DEL PEAK 23(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE 
                             73                             451 
  DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE 
                             73                             451 
[1] "DEL PEAK 24(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE 
                            99                            425 
  DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE 
                            99                            425 
[1] "DEL PEAK 25(11Q14.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE 
                            66                            458 
  DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE 
                            66                            458 
[1] "DEL PEAK 26(11Q25) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE 
                          89                          435 
  DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE 
                          89                          435 
[1] "DEL PEAK 27(12Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE 
                            53                            471 
  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE 
                            53                            471 
[1] "DEL PEAK 28(12Q24.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE 
                             64                             460 
  DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE 
                             64                             460 
[1] "DEL PEAK 29(13Q11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE 
                          96                          428 
  DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE 
                          96                          428 
[1] "DEL PEAK 30(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE 
                           103                            421 
  DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE 
                           103                            421 
[1] "DEL PEAK 31(14Q13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE 
                            69                            455 
  DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE 
                            69                            455 
[1] "DEL PEAK 32(15Q15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE 
                           135                            389 
  DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE 
                           135                            389 
[1] "DEL PEAK 33(15Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE 
                         110                          414 
  DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE 
                         110                          414 
[1] "DEL PEAK 34(16P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE 
                            88                            436 
  DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE 
                            88                            436 
[1] "DEL PEAK 35(16Q21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE 
                         150                          374 
  DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE 
                         150                          374 
[1] "DEL PEAK 36(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE 
                           161                            363 
  DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE 
                           161                            363 
[1] "DEL PEAK 37(17P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(17P13.3) MUTATED DEL PEAK 37(17P13.3) WILD-TYPE 
                           115                            409 
  DEL PEAK 37(17P13.3) MUTATED DEL PEAK 37(17P13.3) WILD-TYPE 
                           115                            409 
[1] "DEL PEAK 38(17P11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 38(17P11.2) MUTATED DEL PEAK 38(17P11.2) WILD-TYPE 
                           122                            402 
  DEL PEAK 38(17P11.2) MUTATED DEL PEAK 38(17P11.2) WILD-TYPE 
                           122                            402 
[1] "DEL PEAK 39(17P11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE 
                           116                            408 
  DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE 
                           116                            408 
[1] "DEL PEAK 40(17Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE 
                           101                            423 
  DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE 
                           101                            423 
[1] "DEL PEAK 41(17Q21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE 
                            100                             424 
  DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE 
                            100                             424 
[1] "DEL PEAK 42(18Q21.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE 
                            90                            434 
  DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE 
                            90                            434 
[1] "DEL PEAK 43(18Q23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE 
                          96                          428 
  DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE 
                          96                          428 
[1] "DEL PEAK 44(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE 
                           147                            377 
  DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE 
                           147                            377 
[1] "DEL PEAK 45(19P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE 
                          56                          468 
  DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE 
                          56                          468 
[1] "DEL PEAK 46(19Q13.43) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE 
                             64                             460 
  DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE 
                             64                             460 
[1] "DEL PEAK 47(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE 
                            34                            490 
  DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE 
                            34                            490 
[1] "DEL PEAK 48(22Q11.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE 
                            84                            440 
  DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE 
                            84                            440 
[1] "DEL PEAK 49(22Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE 
                            132                             392 
  DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE 
                            132                             392 
[1] "DEL PEAK 50(XP21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 50(XP21.1) MUTATED DEL PEAK 50(XP21.1) WILD-TYPE 
                           84                           440 
  DEL PEAK 50(XP21.1) MUTATED DEL PEAK 50(XP21.1) WILD-TYPE 
                           84                           440 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 524 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 524 columns, 0 survival variables, and 12 non-survival variables.
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
CN_CNMF, nv=5, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=6, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P35.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P35.2) MUTATED        1      5      0      0
  AMP PEAK  1(1P35.2) WILD-TYPE     13     12     12     10
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           5                            12
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P35.2) MUTATED        1      5      0      0      0
  AMP PEAK  1(1P35.2) WILD-TYPE     13      4      7      7     16
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           5                             4
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  1(1P35.2) MUTATED        0      7     48      0      0
  AMP PEAK  1(1P35.2) WILD-TYPE    305     41    106     12      5
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                           0                           305
  CLUS_2                           7                            41
  CLUS_3                          48                           106
  CLUS_4                           0                            12
  CLUS_5                           0                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P35.2) MUTATED       34      4      6
  AMP PEAK  1(1P35.2) WILD-TYPE    124     82    160
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                          34                           124
  CLUS_2                           4                            82
  CLUS_3                           6                           160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  1(1P35.2) MUTATED        2     10      2      0      0      3
  AMP PEAK  1(1P35.2) WILD-TYPE     39     27     37     12     41     21
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                           2                            39
  CLUS_2                          10                            27
  CLUS_3                           2                            37
  CLUS_4                           0                            12
  CLUS_5                           0                            41
  CLUS_6                           3                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P35.2) MUTATED        8      5      1      3
  AMP PEAK  1(1P35.2) WILD-TYPE     59     62     42     14
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                           8                            59
  CLUS_2                           5                            62
  CLUS_3                           1                            42
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P35.2) MUTATED       48      1      5
  AMP PEAK  1(1P35.2) WILD-TYPE    176    149    140
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                          48                           176
  CLUS_2                           1                           149
  CLUS_3                           5                           140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P35.2) MUTATED       42      6      6
  AMP PEAK  1(1P35.2) WILD-TYPE    121    207    137
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                          42                           121
  CLUS_2                           6                           207
  CLUS_3                           6                           137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P35.2) MUTATED        6     40      6
  AMP PEAK  1(1P35.2) WILD-TYPE    135    179    149
D1V9, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                           6                           135
  CLUS_2                          40                           179
  CLUS_3                           6                           149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  1(1P35.2) MUTATED        0     36      4     12
  AMP PEAK  1(1P35.2) WILD-TYPE     55    126    112    170
D1V10, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                           0                            55
  CLUS_2                          36                           126
  CLUS_3                           4                           112
  CLUS_4                          12                           170
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P35.2) MUTATED        7     30      5
  AMP PEAK  1(1P35.2) WILD-TYPE    114    147     89
D1V11, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                           7                           114
  CLUS_2                          30                           147
  CLUS_3                           5                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  1(1P35.2) MUTATED       30      6      6
  AMP PEAK  1(1P35.2) WILD-TYPE    141    102    107
D1V12, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                          30                           141
  CLUS_2                           6                           102
  CLUS_3                           6                           107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK  2(1P34.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1P34.2) MUTATED        1      6      0      0
  AMP PEAK  2(1P34.2) WILD-TYPE     13     11     12     10
D2V1, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           6                            11
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1P34.2) MUTATED        2      5      0      0      0
  AMP PEAK  2(1P34.2) WILD-TYPE     12      4      7      7     16
D2V2, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           5                             4
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  2(1P34.2) MUTATED        0      5     66      0      0
  AMP PEAK  2(1P34.2) WILD-TYPE    305     43     88     12      5
D2V3, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                           0                           305
  CLUS_2                           5                            43
  CLUS_3                          66                            88
  CLUS_4                           0                            12
  CLUS_5                           0                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P34.2) MUTATED       46     10      5
  AMP PEAK  2(1P34.2) WILD-TYPE    112     76    161
D2V4, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          46                           112
  CLUS_2                          10                            76
  CLUS_3                           5                           161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  2(1P34.2) MUTATED        2      7      2      0      0      3
  AMP PEAK  2(1P34.2) WILD-TYPE     39     30     37     12     41     21
D2V5, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                           2                            39
  CLUS_2                           7                            30
  CLUS_3                           2                            37
  CLUS_4                           0                            12
  CLUS_5                           0                            41
  CLUS_6                           3                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1P34.2) MUTATED        7      3      1      3
  AMP PEAK  2(1P34.2) WILD-TYPE     60     64     42     14
D2V6, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                           7                            60
  CLUS_2                           3                            64
  CLUS_3                           1                            42
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P34.2) MUTATED       63      2      5
  AMP PEAK  2(1P34.2) WILD-TYPE    161    148    140
D2V7, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          63                           161
  CLUS_2                           2                           148
  CLUS_3                           5                           140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P34.2) MUTATED       57      7      6
  AMP PEAK  2(1P34.2) WILD-TYPE    106    206    137
D2V8, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          57                           106
  CLUS_2                           7                           206
  CLUS_3                           6                           137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P34.2) MUTATED        5     60      4
  AMP PEAK  2(1P34.2) WILD-TYPE    136    159    151
D2V9, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                           5                           136
  CLUS_2                          60                           159
  CLUS_3                           4                           151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  2(1P34.2) MUTATED        0     53      3     13
  AMP PEAK  2(1P34.2) WILD-TYPE     55    109    113    169
D2V10, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                           0                            55
  CLUS_2                          53                           109
  CLUS_3                           3                           113
  CLUS_4                          13                           169
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P34.2) MUTATED        6     41     11
  AMP PEAK  2(1P34.2) WILD-TYPE    115    136     83
D2V11, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                           6                           115
  CLUS_2                          41                           136
  CLUS_3                          11                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  2(1P34.2) MUTATED       42      5     11
  AMP PEAK  2(1P34.2) WILD-TYPE    129    103    102
D2V12, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          42                           129
  CLUS_2                           5                           103
  CLUS_3                          11                           102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK  3(1P22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1P22.3) MUTATED        5      5      0      0
  AMP PEAK  3(1P22.3) WILD-TYPE      9     12     12     10
D3V1, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                           5                             9
  CLUS_2                           5                            12
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1P22.3) MUTATED        2      4      1      3      0
  AMP PEAK  3(1P22.3) WILD-TYPE     12      5      6      4     16
D3V2, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           4                             5
  CLUS_3                           1                             6
  CLUS_4                           3                             4
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  3(1P22.3) MUTATED       31      7     48      1      5
  AMP PEAK  3(1P22.3) WILD-TYPE    274     41    106     11      0
D3V3, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                          31                           274
  CLUS_2                           7                            41
  CLUS_3                          48                           106
  CLUS_4                           1                            11
  CLUS_5                           5                             0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1P22.3) MUTATED       40      8     24
  AMP PEAK  3(1P22.3) WILD-TYPE    118     78    142
D3V4, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                          40                           118
  CLUS_2                           8                            78
  CLUS_3                          24                           142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  3(1P22.3) MUTATED        4      6      7      1      7      3
  AMP PEAK  3(1P22.3) WILD-TYPE     37     31     32     11     34     21
D3V5, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                           4                            37
  CLUS_2                           6                            31
  CLUS_3                           7                            32
  CLUS_4                           1                            11
  CLUS_5                           7                            34
  CLUS_6                           3                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1P22.3) MUTATED        8     11      6      3
  AMP PEAK  3(1P22.3) WILD-TYPE     59     56     37     14
D3V6, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                           8                            59
  CLUS_2                          11                            56
  CLUS_3                           6                            37
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1P22.3) MUTATED       55     27      8
  AMP PEAK  3(1P22.3) WILD-TYPE    169    123    137
D3V7, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                          55                           169
  CLUS_2                          27                           123
  CLUS_3                           8                           137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1P22.3) MUTATED       46     36      8
  AMP PEAK  3(1P22.3) WILD-TYPE    117    177    135
D3V8, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                          46                           117
  CLUS_2                          36                           177
  CLUS_3                           8                           135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1P22.3) MUTATED       33     51      7
  AMP PEAK  3(1P22.3) WILD-TYPE    108    168    148
D3V9, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                          33                           108
  CLUS_2                          51                           168
  CLUS_3                           7                           148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  3(1P22.3) MUTATED        7     43      6     35
  AMP PEAK  3(1P22.3) WILD-TYPE     48    119    110    147
D3V10, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                           7                            48
  CLUS_2                          43                           119
  CLUS_3                           6                           110
  CLUS_4                          35                           147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1P22.3) MUTATED       14     45     12
  AMP PEAK  3(1P22.3) WILD-TYPE    107    132     82
D3V11, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                          14                           107
  CLUS_2                          45                           132
  CLUS_3                          12                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  3(1P22.3) MUTATED       52      7     12
  AMP PEAK  3(1P22.3) WILD-TYPE    119    101    101
D3V12, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                          52                           119
  CLUS_2                           7                           101
  CLUS_3                          12                           101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK  4(1Q21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(1Q21.3) MUTATED       11     12      5      2
  AMP PEAK  4(1Q21.3) WILD-TYPE      3      5      7      8
D4V1, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          11                             3
  CLUS_2                          12                             5
  CLUS_3                           5                             7
  CLUS_4                           2                             8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(1Q21.3) MUTATED        9      7      6      5      3
  AMP PEAK  4(1Q21.3) WILD-TYPE      5      2      1      2     13
D4V2, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                           9                             5
  CLUS_2                           7                             2
  CLUS_3                           6                             1
  CLUS_4                           5                             2
  CLUS_5                           3                            13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  4(1Q21.3) MUTATED       91     29     99      9      5
  AMP PEAK  4(1Q21.3) WILD-TYPE    214     19     55      3      0
D4V3, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          91                           214
  CLUS_2                          29                            19
  CLUS_3                          99                            55
  CLUS_4                           9                             3
  CLUS_5                           5                             0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q21.3) MUTATED       87     30     59
  AMP PEAK  4(1Q21.3) WILD-TYPE     71     56    107
D4V4, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          87                            71
  CLUS_2                          30                            56
  CLUS_3                          59                           107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  4(1Q21.3) MUTATED       14     15     17      8     19      8
  AMP PEAK  4(1Q21.3) WILD-TYPE     27     22     22      4     22     16
D4V5, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          14                            27
  CLUS_2                          15                            22
  CLUS_3                          17                            22
  CLUS_4                           8                             4
  CLUS_5                          19                            22
  CLUS_6                           8                            16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(1Q21.3) MUTATED       24     28     23      6
  AMP PEAK  4(1Q21.3) WILD-TYPE     43     39     20     11
D4V6, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          24                            43
  CLUS_2                          28                            39
  CLUS_3                          23                            20
  CLUS_4                           6                            11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q21.3) MUTATED      123     67     41
  AMP PEAK  4(1Q21.3) WILD-TYPE    101     83    104
D4V7, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                         123                           101
  CLUS_2                          67                            83
  CLUS_3                          41                           104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q21.3) MUTATED       99     93     39
  AMP PEAK  4(1Q21.3) WILD-TYPE     64    120    104
D4V8, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          99                            64
  CLUS_2                          93                           120
  CLUS_3                          39                           104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q21.3) MUTATED       73    114     43
  AMP PEAK  4(1Q21.3) WILD-TYPE     68    105    112
D4V9, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          73                            68
  CLUS_2                         114                           105
  CLUS_3                          43                           112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  4(1Q21.3) MUTATED       23     96     35     76
  AMP PEAK  4(1Q21.3) WILD-TYPE     32     66     81    106
D4V10, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          23                            32
  CLUS_2                          96                            66
  CLUS_3                          35                            81
  CLUS_4                          76                           106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q21.3) MUTATED       44     90     41
  AMP PEAK  4(1Q21.3) WILD-TYPE     77     87     53
D4V11, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          44                            77
  CLUS_2                          90                            87
  CLUS_3                          41                            53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  4(1Q21.3) MUTATED       95     34     46
  AMP PEAK  4(1Q21.3) WILD-TYPE     76     74     67
D4V12, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          95                            76
  CLUS_2                          34                            74
  CLUS_3                          46                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK  5(1Q22) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(1Q22) MUTATED       11     11      5      2
  AMP PEAK  5(1Q22) WILD-TYPE      3      6      7      8
D5V1, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                        11                           3
  CLUS_2                        11                           6
  CLUS_3                         5                           7
  CLUS_4                         2                           8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(1Q22) MUTATED        9      6      6      5      3
  AMP PEAK  5(1Q22) WILD-TYPE      5      3      1      2     13
D5V2, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                         9                           5
  CLUS_2                         6                           3
  CLUS_3                         6                           1
  CLUS_4                         5                           2
  CLUS_5                         3                          13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  5(1Q22) MUTATED       94     30    109      9      5
  AMP PEAK  5(1Q22) WILD-TYPE    211     18     45      3      0
D5V3, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                        94                         211
  CLUS_2                        30                          18
  CLUS_3                       109                          45
  CLUS_4                         9                           3
  CLUS_5                         5                           0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(1Q22) MUTATED       96     32     60
  AMP PEAK  5(1Q22) WILD-TYPE     62     54    106
D5V4, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                        96                          62
  CLUS_2                        32                          54
  CLUS_3                        60                         106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  5(1Q22) MUTATED       13     19     19      8     19      8
  AMP PEAK  5(1Q22) WILD-TYPE     28     18     20      4     22     16
D5V5, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                        13                          28
  CLUS_2                        19                          18
  CLUS_3                        19                          20
  CLUS_4                         8                           4
  CLUS_5                        19                          22
  CLUS_6                         8                          16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(1Q22) MUTATED       26     29     25      6
  AMP PEAK  5(1Q22) WILD-TYPE     41     38     18     11
D5V6, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                        26                          41
  CLUS_2                        29                          38
  CLUS_3                        25                          18
  CLUS_4                         6                          11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(1Q22) MUTATED      132     68     45
  AMP PEAK  5(1Q22) WILD-TYPE     92     82    100
D5V7, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                       132                          92
  CLUS_2                        68                          82
  CLUS_3                        45                         100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(1Q22) MUTATED      107     95     43
  AMP PEAK  5(1Q22) WILD-TYPE     56    118    100
D5V8, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                       107                          56
  CLUS_2                        95                         118
  CLUS_3                        43                         100
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(1Q22) MUTATED       75    121     48
  AMP PEAK  5(1Q22) WILD-TYPE     66     98    107
D5V9, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                        75                          66
  CLUS_2                       121                          98
  CLUS_3                        48                         107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  5(1Q22) MUTATED       24    104     40     76
  AMP PEAK  5(1Q22) WILD-TYPE     31     58     76    106
D5V10, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                        24                          31
  CLUS_2                       104                          58
  CLUS_3                        40                          76
  CLUS_4                        76                         106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(1Q22) MUTATED       49     95     44
  AMP PEAK  5(1Q22) WILD-TYPE     72     82     50
D5V11, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                        49                          72
  CLUS_2                        95                          82
  CLUS_3                        44                          50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  5(1Q22) MUTATED       97     39     52
  AMP PEAK  5(1Q22) WILD-TYPE     74     69     61
D5V12, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                        97                          74
  CLUS_2                        39                          69
  CLUS_3                        52                          61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK  6(1Q44) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(1Q44) MUTATED       10     11      4      2
  AMP PEAK  6(1Q44) WILD-TYPE      4      6      8      8
D6V1, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        10                           4
  CLUS_2                        11                           6
  CLUS_3                         4                           8
  CLUS_4                         2                           8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(1Q44) MUTATED        9      5      5      5      3
  AMP PEAK  6(1Q44) WILD-TYPE      5      4      2      2     13
D6V2, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                         9                           5
  CLUS_2                         5                           4
  CLUS_3                         5                           2
  CLUS_4                         5                           2
  CLUS_5                         3                          13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  6(1Q44) MUTATED       95     27     77      9      5
  AMP PEAK  6(1Q44) WILD-TYPE    210     21     77      3      0
D6V3, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        95                         210
  CLUS_2                        27                          21
  CLUS_3                        77                          77
  CLUS_4                         9                           3
  CLUS_5                         5                           0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(1Q44) MUTATED       72     25     59
  AMP PEAK  6(1Q44) WILD-TYPE     86     61    107
D6V4, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        72                          86
  CLUS_2                        25                          61
  CLUS_3                        59                         107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  6(1Q44) MUTATED       14     14     17      7     19      9
  AMP PEAK  6(1Q44) WILD-TYPE     27     23     22      5     22     15
D6V5, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        14                          27
  CLUS_2                        14                          23
  CLUS_3                        17                          22
  CLUS_4                         7                           5
  CLUS_5                        19                          22
  CLUS_6                         9                          15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(1Q44) MUTATED       21     32     21      6
  AMP PEAK  6(1Q44) WILD-TYPE     46     35     22     11
D6V6, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        21                          46
  CLUS_2                        32                          35
  CLUS_3                        21                          22
  CLUS_4                         6                          11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(1Q44) MUTATED       97     72     43
  AMP PEAK  6(1Q44) WILD-TYPE    127     78    102
D6V7, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        97                         127
  CLUS_2                        72                          78
  CLUS_3                        43                         102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(1Q44) MUTATED       74     96     42
  AMP PEAK  6(1Q44) WILD-TYPE     89    117    101
D6V8, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        74                          89
  CLUS_2                        96                         117
  CLUS_3                        42                         101
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(1Q44) MUTATED       76     89     46
  AMP PEAK  6(1Q44) WILD-TYPE     65    130    109
D6V9, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        76                          65
  CLUS_2                        89                         130
  CLUS_3                        46                         109
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  6(1Q44) MUTATED       26     73     36     76
  AMP PEAK  6(1Q44) WILD-TYPE     29     89     80    106
D6V10, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        26                          29
  CLUS_2                        73                          89
  CLUS_3                        36                          80
  CLUS_4                        76                         106
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(1Q44) MUTATED       46     68     40
  AMP PEAK  6(1Q44) WILD-TYPE     75    109     54
D6V11, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        46                          75
  CLUS_2                        68                         109
  CLUS_3                        40                          54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  6(1Q44) MUTATED       71     37     46
  AMP PEAK  6(1Q44) WILD-TYPE    100     71     67
D6V12, multiclass
        clus
vv       AMP PEAK  6(1Q44) MUTATED AMP PEAK  6(1Q44) WILD-TYPE
  CLUS_1                        71                         100
  CLUS_2                        37                          71
  CLUS_3                        46                          67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = AMP PEAK  7(2P24.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(2P24.3) MUTATED        1      4      2      1
  AMP PEAK  7(2P24.3) WILD-TYPE     13     13     10      9
D7V1, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           4                            13
  CLUS_3                           2                            10
  CLUS_4                           1                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(2P24.3) MUTATED        1      4      1      0      2
  AMP PEAK  7(2P24.3) WILD-TYPE     13      5      6      7     14
D7V2, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           4                             5
  CLUS_3                           1                             6
  CLUS_4                           0                             7
  CLUS_5                           2                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  7(2P24.3) MUTATED       15     29     68      3      2
  AMP PEAK  7(2P24.3) WILD-TYPE    290     19     86      9      3
D7V3, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                          15                           290
  CLUS_2                          29                            19
  CLUS_3                          68                            86
  CLUS_4                           3                             9
  CLUS_5                           2                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(2P24.3) MUTATED       62     11     19
  AMP PEAK  7(2P24.3) WILD-TYPE     96     75    147
D7V4, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                          62                            96
  CLUS_2                          11                            75
  CLUS_3                          19                           147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  7(2P24.3) MUTATED        4     11      3      1      6      7
  AMP PEAK  7(2P24.3) WILD-TYPE     37     26     36     11     35     17
D7V5, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                           4                            37
  CLUS_2                          11                            26
  CLUS_3                           3                            36
  CLUS_4                           1                            11
  CLUS_5                           6                            35
  CLUS_6                           7                            17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(2P24.3) MUTATED       10     13      4      5
  AMP PEAK  7(2P24.3) WILD-TYPE     57     54     39     12
D7V6, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                          10                            57
  CLUS_2                          13                            54
  CLUS_3                           4                            39
  CLUS_4                           5                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(2P24.3) MUTATED       80     21     15
  AMP PEAK  7(2P24.3) WILD-TYPE    144    129    130
D7V7, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                          80                           144
  CLUS_2                          21                           129
  CLUS_3                          15                           130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(2P24.3) MUTATED       69     31     16
  AMP PEAK  7(2P24.3) WILD-TYPE     94    182    127
D7V8, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                          69                            94
  CLUS_2                          31                           182
  CLUS_3                          16                           127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(2P24.3) MUTATED       19     76     20
  AMP PEAK  7(2P24.3) WILD-TYPE    122    143    135
D7V9, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                          19                           122
  CLUS_2                          76                           143
  CLUS_3                          20                           135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  7(2P24.3) MUTATED        8     63     16     28
  AMP PEAK  7(2P24.3) WILD-TYPE     47     99    100    154
D7V10, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                           8                            47
  CLUS_2                          63                            99
  CLUS_3                          16                           100
  CLUS_4                          28                           154
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(2P24.3) MUTATED       14     53     22
  AMP PEAK  7(2P24.3) WILD-TYPE    107    124     72
D7V11, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                          14                           107
  CLUS_2                          53                           124
  CLUS_3                          22                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  7(2P24.3) MUTATED       48     14     27
  AMP PEAK  7(2P24.3) WILD-TYPE    123     94     86
D7V12, multiclass
        clus
vv       AMP PEAK  7(2P24.3) MUTATED AMP PEAK  7(2P24.3) WILD-TYPE
  CLUS_1                          48                           123
  CLUS_2                          14                            94
  CLUS_3                          27                            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = AMP PEAK  8(2Q13) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(2Q13) MUTATED        2      6      2      0
  AMP PEAK  8(2Q13) WILD-TYPE     12     11     10     10
D8V1, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                         2                          12
  CLUS_2                         6                          11
  CLUS_3                         2                          10
  CLUS_4                         0                          10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(2Q13) MUTATED        3      5      1      0      1
  AMP PEAK  8(2Q13) WILD-TYPE     11      4      6      7     15
D8V2, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                         3                          11
  CLUS_2                         5                           4
  CLUS_3                         1                           6
  CLUS_4                         0                           7
  CLUS_5                         1                          15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  8(2Q13) MUTATED        7     23     82      1      1
  AMP PEAK  8(2Q13) WILD-TYPE    298     25     72     11      4
D8V3, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                         7                         298
  CLUS_2                        23                          25
  CLUS_3                        82                          72
  CLUS_4                         1                          11
  CLUS_5                         1                           4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(2Q13) MUTATED       67     14     10
  AMP PEAK  8(2Q13) WILD-TYPE     91     72    156
D8V4, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                        67                          91
  CLUS_2                        14                          72
  CLUS_3                        10                         156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  8(2Q13) MUTATED        5     12      1      1      4      7
  AMP PEAK  8(2Q13) WILD-TYPE     36     25     38     11     37     17
D8V5, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                         5                          36
  CLUS_2                        12                          25
  CLUS_3                         1                          38
  CLUS_4                         1                          11
  CLUS_5                         4                          37
  CLUS_6                         7                          17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(2Q13) MUTATED       13      8      3      6
  AMP PEAK  8(2Q13) WILD-TYPE     54     59     40     11
D8V6, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                        13                          54
  CLUS_2                         8                          59
  CLUS_3                         3                          40
  CLUS_4                         6                          11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(2Q13) MUTATED       91     13      8
  AMP PEAK  8(2Q13) WILD-TYPE    133    137    137
D8V7, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                        91                         133
  CLUS_2                        13                         137
  CLUS_3                         8                         137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(2Q13) MUTATED       82     21      9
  AMP PEAK  8(2Q13) WILD-TYPE     81    192    134
D8V8, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                        82                          81
  CLUS_2                        21                         192
  CLUS_3                         9                         134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(2Q13) MUTATED       14     88     10
  AMP PEAK  8(2Q13) WILD-TYPE    127    131    145
D8V9, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                        14                         127
  CLUS_2                        88                         131
  CLUS_3                        10                         145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  8(2Q13) MUTATED        5     80     10     17
  AMP PEAK  8(2Q13) WILD-TYPE     50     82    106    165
D8V10, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                         5                          50
  CLUS_2                        80                          82
  CLUS_3                        10                         106
  CLUS_4                        17                         165
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(2Q13) MUTATED        8     57     24
  AMP PEAK  8(2Q13) WILD-TYPE    113    120     70
D8V11, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                         8                         113
  CLUS_2                        57                         120
  CLUS_3                        24                          70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  8(2Q13) MUTATED       47      9     33
  AMP PEAK  8(2Q13) WILD-TYPE    124     99     80
D8V12, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                        47                         124
  CLUS_2                         9                          99
  CLUS_3                        33                          80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = AMP PEAK  9(3P25.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(3P25.1) MUTATED        1      5      2      0
  AMP PEAK  9(3P25.1) WILD-TYPE     13     12     10     10
D9V1, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           5                            12
  CLUS_3                           2                            10
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(3P25.1) MUTATED        3      3      2      0      0
  AMP PEAK  9(3P25.1) WILD-TYPE     11      6      5      7     16
D9V2, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           3                             6
  CLUS_3                           2                             5
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK  9(3P25.1) MUTATED        4      6     56      9      2
  AMP PEAK  9(3P25.1) WILD-TYPE    301     42     98      3      3
D9V3, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                           4                           301
  CLUS_2                           6                            42
  CLUS_3                          56                            98
  CLUS_4                           9                             3
  CLUS_5                           2                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(3P25.1) MUTATED       40     14      9
  AMP PEAK  9(3P25.1) WILD-TYPE    118     72    157
D9V4, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                          40                           118
  CLUS_2                          14                            72
  CLUS_3                           9                           157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK  9(3P25.1) MUTATED        6      7      3      1      0      1
  AMP PEAK  9(3P25.1) WILD-TYPE     35     30     36     11     41     23
D9V5, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                           6                            35
  CLUS_2                           7                            30
  CLUS_3                           3                            36
  CLUS_4                           1                            11
  CLUS_5                           0                            41
  CLUS_6                           1                            23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(3P25.1) MUTATED        9      7      2      0
  AMP PEAK  9(3P25.1) WILD-TYPE     58     60     41     17
D9V6, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                           9                            58
  CLUS_2                           7                            60
  CLUS_3                           2                            41
  CLUS_4                           0                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(3P25.1) MUTATED       62      4     10
  AMP PEAK  9(3P25.1) WILD-TYPE    162    146    135
D9V7, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                          62                           162
  CLUS_2                           4                           146
  CLUS_3                          10                           135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(3P25.1) MUTATED       51     16      9
  AMP PEAK  9(3P25.1) WILD-TYPE    112    197    134
D9V8, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                          51                           112
  CLUS_2                          16                           197
  CLUS_3                           9                           134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(3P25.1) MUTATED        9     55     11
  AMP PEAK  9(3P25.1) WILD-TYPE    132    164    144
D9V9, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                           9                           132
  CLUS_2                          55                           164
  CLUS_3                          11                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK  9(3P25.1) MUTATED        0     46      9     20
  AMP PEAK  9(3P25.1) WILD-TYPE     55    116    107    162
D9V10, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                           0                            55
  CLUS_2                          46                           116
  CLUS_3                           9                           107
  CLUS_4                          20                           162
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(3P25.1) MUTATED        9     38     15
  AMP PEAK  9(3P25.1) WILD-TYPE    112    139     79
D9V11, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                           9                           112
  CLUS_2                          38                           139
  CLUS_3                          15                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK  9(3P25.1) MUTATED       39      8     15
  AMP PEAK  9(3P25.1) WILD-TYPE    132    100     98
D9V12, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                          39                           132
  CLUS_2                           8                           100
  CLUS_3                          15                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = AMP PEAK 10(3P14.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(3P14.1) MUTATED        0      2      1      0
  AMP PEAK 10(3P14.1) WILD-TYPE     14     15     11     10
D10V1, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           2                            15
  CLUS_3                           1                            11
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(3P14.1) MUTATED        1      1      1      0      0
  AMP PEAK 10(3P14.1) WILD-TYPE     13      8      6      7     16
D10V2, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           1                             8
  CLUS_3                           1                             6
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 10(3P14.1) MUTATED        4      6     40      9      2
  AMP PEAK 10(3P14.1) WILD-TYPE    301     42    114      3      3
D10V3, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                           4                           301
  CLUS_2                           6                            42
  CLUS_3                          40                           114
  CLUS_4                           9                             3
  CLUS_5                           2                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(3P14.1) MUTATED       32     10     10
  AMP PEAK 10(3P14.1) WILD-TYPE    126     76    156
D10V4, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                          32                           126
  CLUS_2                          10                            76
  CLUS_3                          10                           156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 10(3P14.1) MUTATED        4      6      2      1      0      0
  AMP PEAK 10(3P14.1) WILD-TYPE     37     31     37     11     41     24
D10V5, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                           4                            37
  CLUS_2                           6                            31
  CLUS_3                           2                            37
  CLUS_4                           1                            11
  CLUS_5                           0                            41
  CLUS_6                           0                            24
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(3P14.1) MUTATED        6      5      2      0
  AMP PEAK 10(3P14.1) WILD-TYPE     61     62     41     17
D10V6, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                           6                            61
  CLUS_2                           5                            62
  CLUS_3                           2                            41
  CLUS_4                           0                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(3P14.1) MUTATED       46      3     11
  AMP PEAK 10(3P14.1) WILD-TYPE    178    147    134
D10V7, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                          46                           178
  CLUS_2                           3                           147
  CLUS_3                          11                           134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(3P14.1) MUTATED       36     15      9
  AMP PEAK 10(3P14.1) WILD-TYPE    127    198    134
D10V8, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                          36                           127
  CLUS_2                          15                           198
  CLUS_3                           9                           134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(3P14.1) MUTATED        8     41     11
  AMP PEAK 10(3P14.1) WILD-TYPE    133    178    144
D10V9, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                           8                           133
  CLUS_2                          41                           178
  CLUS_3                          11                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 10(3P14.1) MUTATED        0     34      9     17
  AMP PEAK 10(3P14.1) WILD-TYPE     55    128    107    165
D10V10, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                           0                            55
  CLUS_2                          34                           128
  CLUS_3                           9                           107
  CLUS_4                          17                           165
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(3P14.1) MUTATED        8     29     14
  AMP PEAK 10(3P14.1) WILD-TYPE    113    148     80
D10V11, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                           8                           113
  CLUS_2                          29                           148
  CLUS_3                          14                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 10(3P14.1) MUTATED       26      9     16
  AMP PEAK 10(3P14.1) WILD-TYPE    145     99     97
D10V12, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                          26                           145
  CLUS_2                           9                            99
  CLUS_3                          16                            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = AMP PEAK 11(3Q26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(3Q26.2) MUTATED        1     11      1      0
  AMP PEAK 11(3Q26.2) WILD-TYPE     13      6     11     10
D11V1, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                          11                             6
  CLUS_3                           1                            11
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(3Q26.2) MUTATED        4      8      1      0      0
  AMP PEAK 11(3Q26.2) WILD-TYPE     10      1      6      7     16
D11V2, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                           4                            10
  CLUS_2                           8                             1
  CLUS_3                           1                             6
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 11(3Q26.2) MUTATED       12     12    128     11      4
  AMP PEAK 11(3Q26.2) WILD-TYPE    293     36     26      1      1
D11V3, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                          12                           293
  CLUS_2                          12                            36
  CLUS_3                         128                            26
  CLUS_4                          11                             1
  CLUS_5                           4                             1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(3Q26.2) MUTATED       95     25     22
  AMP PEAK 11(3Q26.2) WILD-TYPE     63     61    144
D11V4, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                          95                            63
  CLUS_2                          25                            61
  CLUS_3                          22                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 11(3Q26.2) MUTATED       11     15      4      1      1      6
  AMP PEAK 11(3Q26.2) WILD-TYPE     30     22     35     11     40     18
D11V5, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                          11                            30
  CLUS_2                          15                            22
  CLUS_3                           4                            35
  CLUS_4                           1                            11
  CLUS_5                           1                            40
  CLUS_6                           6                            18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(3Q26.2) MUTATED       21     10      3      4
  AMP PEAK 11(3Q26.2) WILD-TYPE     46     57     40     13
D11V6, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                          21                            46
  CLUS_2                          10                            57
  CLUS_3                           3                            40
  CLUS_4                           4                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(3Q26.2) MUTATED      134      9     22
  AMP PEAK 11(3Q26.2) WILD-TYPE     90    141    123
D11V7, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                         134                            90
  CLUS_2                           9                           141
  CLUS_3                          22                           123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(3Q26.2) MUTATED      115     28     22
  AMP PEAK 11(3Q26.2) WILD-TYPE     48    185    121
D11V8, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                         115                            48
  CLUS_2                          28                           185
  CLUS_3                          22                           121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(3Q26.2) MUTATED       14    128     21
  AMP PEAK 11(3Q26.2) WILD-TYPE    127     91    134
D11V9, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                          14                           127
  CLUS_2                         128                            91
  CLUS_3                          21                           134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 11(3Q26.2) MUTATED        1    104     18     40
  AMP PEAK 11(3Q26.2) WILD-TYPE     54     58     98    142
D11V10, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                           1                            54
  CLUS_2                         104                            58
  CLUS_3                          18                            98
  CLUS_4                          40                           142
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(3Q26.2) MUTATED       22     85     32
  AMP PEAK 11(3Q26.2) WILD-TYPE     99     92     62
D11V11, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                          22                            99
  CLUS_2                          85                            92
  CLUS_3                          32                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 11(3Q26.2) MUTATED       81     21     37
  AMP PEAK 11(3Q26.2) WILD-TYPE     90     87     76
D11V12, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                          81                            90
  CLUS_2                          21                            87
  CLUS_3                          37                            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = AMP PEAK 12(3Q26.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(3Q26.2) MUTATED        1     10      1      0
  AMP PEAK 12(3Q26.2) WILD-TYPE     13      7     11     10
D12V1, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                          10                             7
  CLUS_3                           1                            11
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(3Q26.2) MUTATED        3      8      1      0      0
  AMP PEAK 12(3Q26.2) WILD-TYPE     11      1      6      7     16
D12V2, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           8                             1
  CLUS_3                           1                             6
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 12(3Q26.2) MUTATED        8     11    122     11      4
  AMP PEAK 12(3Q26.2) WILD-TYPE    297     37     32      1      1
D12V3, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                           8                           297
  CLUS_2                          11                            37
  CLUS_3                         122                            32
  CLUS_4                          11                             1
  CLUS_5                           4                             1
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(3Q26.2) MUTATED       94     20     19
  AMP PEAK 12(3Q26.2) WILD-TYPE     64     66    147
D12V4, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                          94                            64
  CLUS_2                          20                            66
  CLUS_3                          19                           147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 12(3Q26.2) MUTATED       11     13      4      1      1      7
  AMP PEAK 12(3Q26.2) WILD-TYPE     30     24     35     11     40     17
D12V5, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                          11                            30
  CLUS_2                          13                            24
  CLUS_3                           4                            35
  CLUS_4                           1                            11
  CLUS_5                           1                            40
  CLUS_6                           7                            17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(3Q26.2) MUTATED       19     10      3      5
  AMP PEAK 12(3Q26.2) WILD-TYPE     48     57     40     12
D12V6, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                          19                            48
  CLUS_2                          10                            57
  CLUS_3                           3                            40
  CLUS_4                           5                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(3Q26.2) MUTATED      127      9     18
  AMP PEAK 12(3Q26.2) WILD-TYPE     97    141    127
D12V7, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                         127                            97
  CLUS_2                           9                           141
  CLUS_3                          18                           127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(3Q26.2) MUTATED      110     26     18
  AMP PEAK 12(3Q26.2) WILD-TYPE     53    187    125
D12V8, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                         110                            53
  CLUS_2                          26                           187
  CLUS_3                          18                           125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(3Q26.2) MUTATED       14    120     18
  AMP PEAK 12(3Q26.2) WILD-TYPE    127     99    137
D12V9, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                          14                           127
  CLUS_2                         120                            99
  CLUS_3                          18                           137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 12(3Q26.2) MUTATED        1    100     14     37
  AMP PEAK 12(3Q26.2) WILD-TYPE     54     62    102    145
D12V10, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                           1                            54
  CLUS_2                         100                            62
  CLUS_3                          14                           102
  CLUS_4                          37                           145
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(3Q26.2) MUTATED       18     83     28
  AMP PEAK 12(3Q26.2) WILD-TYPE    103     94     66
D12V11, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                          18                           103
  CLUS_2                          83                            94
  CLUS_3                          28                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 12(3Q26.2) MUTATED       77     17     35
  AMP PEAK 12(3Q26.2) WILD-TYPE     94     91     78
D12V12, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                          77                            94
  CLUS_2                          17                            91
  CLUS_3                          35                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = AMP PEAK 13(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(4P16.3) MUTATED        1      5      0      0
  AMP PEAK 13(4P16.3) WILD-TYPE     13     12     12     10
D13V1, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           5                            12
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(4P16.3) MUTATED        2      4      0      0      0
  AMP PEAK 13(4P16.3) WILD-TYPE     12      5      7      7     16
D13V2, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           4                             5
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 13(4P16.3) MUTATED        2      1     49      0      0
  AMP PEAK 13(4P16.3) WILD-TYPE    303     47    105     12      5
D13V3, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                           2                           303
  CLUS_2                           1                            47
  CLUS_3                          49                           105
  CLUS_4                           0                            12
  CLUS_5                           0                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(4P16.3) MUTATED       29      8      6
  AMP PEAK 13(4P16.3) WILD-TYPE    129     78    160
D13V4, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          29                           129
  CLUS_2                           8                            78
  CLUS_3                           6                           160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 13(4P16.3) MUTATED        4      5      1      0      0      2
  AMP PEAK 13(4P16.3) WILD-TYPE     37     32     38     12     41     22
D13V5, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                           4                            37
  CLUS_2                           5                            32
  CLUS_3                           1                            38
  CLUS_4                           0                            12
  CLUS_5                           0                            41
  CLUS_6                           2                            22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(4P16.3) MUTATED       10      0      1      1
  AMP PEAK 13(4P16.3) WILD-TYPE     57     67     42     16
D13V6, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          10                            57
  CLUS_2                           0                            67
  CLUS_3                           1                            42
  CLUS_4                           1                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(4P16.3) MUTATED       48      1      2
  AMP PEAK 13(4P16.3) WILD-TYPE    176    149    143
D13V7, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          48                           176
  CLUS_2                           1                           149
  CLUS_3                           2                           143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(4P16.3) MUTATED       41      7      3
  AMP PEAK 13(4P16.3) WILD-TYPE    122    206    140
D13V8, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          41                           122
  CLUS_2                           7                           206
  CLUS_3                           3                           140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(4P16.3) MUTATED        3     43      4
  AMP PEAK 13(4P16.3) WILD-TYPE    138    176    151
D13V9, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                           3                           138
  CLUS_2                          43                           176
  CLUS_3                           4                           151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 13(4P16.3) MUTATED        0     37      5      8
  AMP PEAK 13(4P16.3) WILD-TYPE     55    125    111    174
D13V10, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                           0                            55
  CLUS_2                          37                           125
  CLUS_3                           5                           111
  CLUS_4                           8                           174
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(4P16.3) MUTATED        5     28      9
  AMP PEAK 13(4P16.3) WILD-TYPE    116    149     85
D13V11, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                           5                           116
  CLUS_2                          28                           149
  CLUS_3                           9                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 13(4P16.3) MUTATED       27      5     10
  AMP PEAK 13(4P16.3) WILD-TYPE    144    103    103
D13V12, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          27                           144
  CLUS_2                           5                           103
  CLUS_3                          10                           103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = AMP PEAK 14(5P15.33) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(5P15.33) MUTATED        2      5      1      0
  AMP PEAK 14(5P15.33) WILD-TYPE     12     12     11     10
D14V1, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            5                             12
  CLUS_3                            1                             11
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(5P15.33) MUTATED        2      4      1      1      0
  AMP PEAK 14(5P15.33) WILD-TYPE     12      5      6      6     16
D14V2, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            4                              5
  CLUS_3                            1                              6
  CLUS_4                            1                              6
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 14(5P15.33) MUTATED        4      5     73      0      1
  AMP PEAK 14(5P15.33) WILD-TYPE    301     43     81     12      4
D14V3, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                            4                            301
  CLUS_2                            5                             43
  CLUS_3                           73                             81
  CLUS_4                            0                             12
  CLUS_5                            1                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(5P15.33) MUTATED       52     11      7
  AMP PEAK 14(5P15.33) WILD-TYPE    106     75    159
D14V4, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                           52                            106
  CLUS_2                           11                             75
  CLUS_3                            7                            159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 14(5P15.33) MUTATED        3      5      2      0      3      5
  AMP PEAK 14(5P15.33) WILD-TYPE     38     32     37     12     38     19
D14V5, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                            3                             38
  CLUS_2                            5                             32
  CLUS_3                            2                             37
  CLUS_4                            0                             12
  CLUS_5                            3                             38
  CLUS_6                            5                             19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(5P15.33) MUTATED        7      4      4      3
  AMP PEAK 14(5P15.33) WILD-TYPE     60     63     39     14
D14V6, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                            7                             60
  CLUS_2                            4                             63
  CLUS_3                            4                             39
  CLUS_4                            3                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(5P15.33) MUTATED       73      6      3
  AMP PEAK 14(5P15.33) WILD-TYPE    151    144    142
D14V7, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                           73                            151
  CLUS_2                            6                            144
  CLUS_3                            3                            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(5P15.33) MUTATED       61     16      5
  AMP PEAK 14(5P15.33) WILD-TYPE    102    197    138
D14V8, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                           61                            102
  CLUS_2                           16                            197
  CLUS_3                            5                            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(5P15.33) MUTATED       10     67      5
  AMP PEAK 14(5P15.33) WILD-TYPE    131    152    150
D14V9, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                           10                            131
  CLUS_2                           67                            152
  CLUS_3                            5                            150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 14(5P15.33) MUTATED        3     59      3     17
  AMP PEAK 14(5P15.33) WILD-TYPE     52    103    113    165
D14V10, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                            3                             52
  CLUS_2                           59                            103
  CLUS_3                            3                            113
  CLUS_4                           17                            165
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(5P15.33) MUTATED        6     50     13
  AMP PEAK 14(5P15.33) WILD-TYPE    115    127     81
D14V11, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                            6                            115
  CLUS_2                           50                            127
  CLUS_3                           13                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 14(5P15.33) MUTATED       46      5     18
  AMP PEAK 14(5P15.33) WILD-TYPE    125    103     95
D14V12, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                           46                            125
  CLUS_2                            5                            103
  CLUS_3                           18                             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = AMP PEAK 15(5Q35.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(5Q35.3) MUTATED        0      3      0      0
  AMP PEAK 15(5Q35.3) WILD-TYPE     14     14     12     10
D15V1, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           3                            14
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(5Q35.3) MUTATED        1      2      0      0      0
  AMP PEAK 15(5Q35.3) WILD-TYPE     13      7      7      7     16
D15V2, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           2                             7
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 15(5Q35.3) MUTATED        2      5     46      0      1
  AMP PEAK 15(5Q35.3) WILD-TYPE    303     43    108     12      4
D15V3, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                           2                           303
  CLUS_2                           5                            43
  CLUS_3                          46                           108
  CLUS_4                           0                            12
  CLUS_5                           1                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(5Q35.3) MUTATED       32      9      6
  AMP PEAK 15(5Q35.3) WILD-TYPE    126     77    160
D15V4, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                          32                           126
  CLUS_2                           9                            77
  CLUS_3                           6                           160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 15(5Q35.3) MUTATED        1      5      0      0      3      1
  AMP PEAK 15(5Q35.3) WILD-TYPE     40     32     39     12     38     23
D15V5, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                           1                            40
  CLUS_2                           5                            32
  CLUS_3                           0                            39
  CLUS_4                           0                            12
  CLUS_5                           3                            38
  CLUS_6                           1                            23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(5Q35.3) MUTATED        4      4      2      0
  AMP PEAK 15(5Q35.3) WILD-TYPE     63     63     41     17
D15V6, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                           4                            63
  CLUS_2                           4                            63
  CLUS_3                           2                            41
  CLUS_4                           0                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(5Q35.3) MUTATED       47      4      3
  AMP PEAK 15(5Q35.3) WILD-TYPE    177    146    142
D15V7, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                          47                           177
  CLUS_2                           4                           146
  CLUS_3                           3                           142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(5Q35.3) MUTATED       40     11      3
  AMP PEAK 15(5Q35.3) WILD-TYPE    123    202    140
D15V8, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                          40                           123
  CLUS_2                          11                           202
  CLUS_3                           3                           140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(5Q35.3) MUTATED        7     42      4
  AMP PEAK 15(5Q35.3) WILD-TYPE    134    177    151
D15V9, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                           7                           134
  CLUS_2                          42                           177
  CLUS_3                           4                           151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 15(5Q35.3) MUTATED        3     37      3     10
  AMP PEAK 15(5Q35.3) WILD-TYPE     52    125    113    172
D15V10, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                           3                            52
  CLUS_2                          37                           125
  CLUS_3                           3                           113
  CLUS_4                          10                           172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(5Q35.3) MUTATED        6     28     11
  AMP PEAK 15(5Q35.3) WILD-TYPE    115    149     83
D15V11, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                           6                           115
  CLUS_2                          28                           149
  CLUS_3                          11                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 15(5Q35.3) MUTATED       25      5     15
  AMP PEAK 15(5Q35.3) WILD-TYPE    146    103     98
D15V12, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                          25                           146
  CLUS_2                           5                           103
  CLUS_3                          15                            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = AMP PEAK 16(6P24.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(6P24.2) MUTATED        1      9      2      0
  AMP PEAK 16(6P24.2) WILD-TYPE     13      8     10     10
D16V1, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           9                             8
  CLUS_3                           2                            10
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(6P24.2) MUTATED        3      7      0      0      2
  AMP PEAK 16(6P24.2) WILD-TYPE     11      2      7      7     14
D16V2, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           7                             2
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           2                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 16(6P24.2) MUTATED        9      5     89      7      1
  AMP PEAK 16(6P24.2) WILD-TYPE    296     43     65      5      4
D16V3, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                           9                           296
  CLUS_2                           5                            43
  CLUS_3                          89                            65
  CLUS_4                           7                             5
  CLUS_5                           1                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(6P24.2) MUTATED       68     15     11
  AMP PEAK 16(6P24.2) WILD-TYPE     90     71    155
D16V4, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                          68                            90
  CLUS_2                          15                            71
  CLUS_3                          11                           155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 16(6P24.2) MUTATED        5     13      2      1      0      3
  AMP PEAK 16(6P24.2) WILD-TYPE     36     24     37     11     41     21
D16V5, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                           5                            36
  CLUS_2                          13                            24
  CLUS_3                           2                            37
  CLUS_4                           1                            11
  CLUS_5                           0                            41
  CLUS_6                           3                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(6P24.2) MUTATED       12      8      2      2
  AMP PEAK 16(6P24.2) WILD-TYPE     55     59     41     15
D16V6, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                          12                            55
  CLUS_2                           8                            59
  CLUS_3                           2                            41
  CLUS_4                           2                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(6P24.2) MUTATED       91      5     15
  AMP PEAK 16(6P24.2) WILD-TYPE    133    145    130
D16V7, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                          91                           133
  CLUS_2                           5                           145
  CLUS_3                          15                           130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(6P24.2) MUTATED       74     23     14
  AMP PEAK 16(6P24.2) WILD-TYPE     89    190    129
D16V8, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                          74                            89
  CLUS_2                          23                           190
  CLUS_3                          14                           129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(6P24.2) MUTATED       13     83     12
  AMP PEAK 16(6P24.2) WILD-TYPE    128    136    143
D16V9, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                          13                           128
  CLUS_2                          83                           136
  CLUS_3                          12                           143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 16(6P24.2) MUTATED        1     71     11     25
  AMP PEAK 16(6P24.2) WILD-TYPE     54     91    105    157
D16V10, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                           1                            54
  CLUS_2                          71                            91
  CLUS_3                          11                           105
  CLUS_4                          25                           157
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(6P24.2) MUTATED       13     57     22
  AMP PEAK 16(6P24.2) WILD-TYPE    108    120     72
D16V11, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                          13                           108
  CLUS_2                          57                           120
  CLUS_3                          22                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 16(6P24.2) MUTATED       54     12     26
  AMP PEAK 16(6P24.2) WILD-TYPE    117     96     87
D16V12, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                          54                           117
  CLUS_2                          12                            96
  CLUS_3                          26                            87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = AMP PEAK 17(6Q25.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(6Q25.1) MUTATED        0      2      2      0
  AMP PEAK 17(6Q25.1) WILD-TYPE     14     15     10     10
D17V1, multiclass
        clus
vv       AMP PEAK 17(6Q25.1) MUTATED AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           2                            15
  CLUS_3                           2                            10
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(6Q25.1) MUTATED        1      1      0      0      2
  AMP PEAK 17(6Q25.1) WILD-TYPE     13      8      7      7     14
D17V2, multiclass
        clus
vv       AMP PEAK 17(6Q25.1) MUTATED AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           1                             8
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           2                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 17(6Q25.1) MUTATED        7      8     61      7      1
  AMP PEAK 17(6Q25.1) WILD-TYPE    298     40     93      5      4
D17V3, multiclass
        clus
vv       AMP PEAK 17(6Q25.1) MUTATED AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                           7                           298
  CLUS_2                           8                            40
  CLUS_3                          61                            93
  CLUS_4                           7                             5
  CLUS_5                           1                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(6Q25.1) MUTATED       52     10     13
  AMP PEAK 17(6Q25.1) WILD-TYPE    106     76    153
D17V4, multiclass
        clus
vv       AMP PEAK 17(6Q25.1) MUTATED AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                          52                           106
  CLUS_2                          10                            76
  CLUS_3                          13                           153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 17(6Q25.1) MUTATED        5      7      1      1      1      2
  AMP PEAK 17(6Q25.1) WILD-TYPE     36     30     38     11     40     22
D17V5, multiclass
        clus
vv       AMP PEAK 17(6Q25.1) MUTATED AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                           5                            36
  CLUS_2                           7                            30
  CLUS_3                           1                            38
  CLUS_4                           1                            11
  CLUS_5                           1                            40
  CLUS_6                           2                            22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(6Q25.1) MUTATED        9      5      2      1
  AMP PEAK 17(6Q25.1) WILD-TYPE     58     62     41     16
D17V6, multiclass
        clus
vv       AMP PEAK 17(6Q25.1) MUTATED AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                           9                            58
  CLUS_2                           5                            62
  CLUS_3                           2                            41
  CLUS_4                           1                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(6Q25.1) MUTATED       59      7     17
  AMP PEAK 17(6Q25.1) WILD-TYPE    165    143    128
D17V7, multiclass
        clus
vv       AMP PEAK 17(6Q25.1) MUTATED AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                          59                           165
  CLUS_2                           7                           143
  CLUS_3                          17                           128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(6Q25.1) MUTATED       45     21     17
  AMP PEAK 17(6Q25.1) WILD-TYPE    118    192    126
D17V8, multiclass
        clus
vv       AMP PEAK 17(6Q25.1) MUTATED AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                          45                           118
  CLUS_2                          21                           192
  CLUS_3                          17                           126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(6Q25.1) MUTATED       16     56     12
  AMP PEAK 17(6Q25.1) WILD-TYPE    125    163    143
D17V9, multiclass
        clus
vv       AMP PEAK 17(6Q25.1) MUTATED AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                          16                           125
  CLUS_2                          56                           163
  CLUS_3                          12                           143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 17(6Q25.1) MUTATED        2     48     11     23
  AMP PEAK 17(6Q25.1) WILD-TYPE     53    114    105    159
D17V10, multiclass
        clus
vv       AMP PEAK 17(6Q25.1) MUTATED AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                           2                            53
  CLUS_2                          48                           114
  CLUS_3                          11                           105
  CLUS_4                          23                           159
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(6Q25.1) MUTATED       13     46     14
  AMP PEAK 17(6Q25.1) WILD-TYPE    108    131     80
D17V11, multiclass
        clus
vv       AMP PEAK 17(6Q25.1) MUTATED AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                          13                           108
  CLUS_2                          46                           131
  CLUS_3                          14                            80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 17(6Q25.1) MUTATED       41     13     19
  AMP PEAK 17(6Q25.1) WILD-TYPE    130     95     94
D17V12, multiclass
        clus
vv       AMP PEAK 17(6Q25.1) MUTATED AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                          41                           130
  CLUS_2                          13                            95
  CLUS_3                          19                            94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = AMP PEAK 18(7Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(7Q22.1) MUTATED        2      5      2      1
  AMP PEAK 18(7Q22.1) WILD-TYPE     12     12     10      9
D18V1, multiclass
        clus
vv       AMP PEAK 18(7Q22.1) MUTATED AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           5                            12
  CLUS_3                           2                            10
  CLUS_4                           1                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(7Q22.1) MUTATED        2      4      1      1      2
  AMP PEAK 18(7Q22.1) WILD-TYPE     12      5      6      6     14
D18V2, multiclass
        clus
vv       AMP PEAK 18(7Q22.1) MUTATED AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           4                             5
  CLUS_3                           1                             6
  CLUS_4                           1                             6
  CLUS_5                           2                            14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 18(7Q22.1) MUTATED       13     26     45      4      2
  AMP PEAK 18(7Q22.1) WILD-TYPE    292     22    109      8      3
D18V3, multiclass
        clus
vv       AMP PEAK 18(7Q22.1) MUTATED AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                          13                           292
  CLUS_2                          26                            22
  CLUS_3                          45                           109
  CLUS_4                           4                             8
  CLUS_5                           2                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(7Q22.1) MUTATED       39      8     21
  AMP PEAK 18(7Q22.1) WILD-TYPE    119     78    145
D18V4, multiclass
        clus
vv       AMP PEAK 18(7Q22.1) MUTATED AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                          39                           119
  CLUS_2                           8                            78
  CLUS_3                          21                           145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 18(7Q22.1) MUTATED        4      8      3      1      5      4
  AMP PEAK 18(7Q22.1) WILD-TYPE     37     29     36     11     36     20
D18V5, multiclass
        clus
vv       AMP PEAK 18(7Q22.1) MUTATED AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                           4                            37
  CLUS_2                           8                            29
  CLUS_3                           3                            36
  CLUS_4                           1                            11
  CLUS_5                           5                            36
  CLUS_6                           4                            20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(7Q22.1) MUTATED        8      9      5      3
  AMP PEAK 18(7Q22.1) WILD-TYPE     59     58     38     14
D18V6, multiclass
        clus
vv       AMP PEAK 18(7Q22.1) MUTATED AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                           8                            59
  CLUS_2                           9                            58
  CLUS_3                           5                            38
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(7Q22.1) MUTATED       58     16     14
  AMP PEAK 18(7Q22.1) WILD-TYPE    166    134    131
D18V7, multiclass
        clus
vv       AMP PEAK 18(7Q22.1) MUTATED AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                          58                           166
  CLUS_2                          16                           134
  CLUS_3                          14                           131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(7Q22.1) MUTATED       44     29     15
  AMP PEAK 18(7Q22.1) WILD-TYPE    119    184    128
D18V8, multiclass
        clus
vv       AMP PEAK 18(7Q22.1) MUTATED AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                          44                           119
  CLUS_2                          29                           184
  CLUS_3                          15                           128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(7Q22.1) MUTATED       21     53     14
  AMP PEAK 18(7Q22.1) WILD-TYPE    120    166    141
D18V9, multiclass
        clus
vv       AMP PEAK 18(7Q22.1) MUTATED AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                          21                           120
  CLUS_2                          53                           166
  CLUS_3                          14                           141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 18(7Q22.1) MUTATED       10     39     12     27
  AMP PEAK 18(7Q22.1) WILD-TYPE     45    123    104    155
D18V10, multiclass
        clus
vv       AMP PEAK 18(7Q22.1) MUTATED AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                          10                            45
  CLUS_2                          39                           123
  CLUS_3                          12                           104
  CLUS_4                          27                           155
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(7Q22.1) MUTATED       14     40     15
  AMP PEAK 18(7Q22.1) WILD-TYPE    107    137     79
D18V11, multiclass
        clus
vv       AMP PEAK 18(7Q22.1) MUTATED AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                          14                           107
  CLUS_2                          40                           137
  CLUS_3                          15                            79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 18(7Q22.1) MUTATED       39     13     17
  AMP PEAK 18(7Q22.1) WILD-TYPE    132     95     96
D18V12, multiclass
        clus
vv       AMP PEAK 18(7Q22.1) MUTATED AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                          39                           132
  CLUS_2                          13                            95
  CLUS_3                          17                            96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = AMP PEAK 19(8P11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(8P11.21) MUTATED        1      8      2      0
  AMP PEAK 19(8P11.21) WILD-TYPE     13      9     10     10
D19V1, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            8                              9
  CLUS_3                            2                             10
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(8P11.21) MUTATED        4      5      0      0      2
  AMP PEAK 19(8P11.21) WILD-TYPE     10      4      7      7     14
D19V2, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            5                              4
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            2                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 19(8P11.21) MUTATED       39     25     78     12      2
  AMP PEAK 19(8P11.21) WILD-TYPE    266     23     76      0      3
D19V3, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                           39                            266
  CLUS_2                           25                             23
  CLUS_3                           78                             76
  CLUS_4                           12                              0
  CLUS_5                            2                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(8P11.21) MUTATED       64     27     41
  AMP PEAK 19(8P11.21) WILD-TYPE     94     59    125
D19V4, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                           64                             94
  CLUS_2                           27                             59
  CLUS_3                           41                            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 19(8P11.21) MUTATED        8     12      5      2      2     11
  AMP PEAK 19(8P11.21) WILD-TYPE     33     25     34     10     39     13
D19V5, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                            8                             33
  CLUS_2                           12                             25
  CLUS_3                            5                             34
  CLUS_4                            2                             10
  CLUS_5                            2                             39
  CLUS_6                           11                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(8P11.21) MUTATED       12     14      6      8
  AMP PEAK 19(8P11.21) WILD-TYPE     55     53     37      9
D19V6, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                           12                             55
  CLUS_2                           14                             53
  CLUS_3                            6                             37
  CLUS_4                            8                              9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(8P11.21) MUTATED       94     29     33
  AMP PEAK 19(8P11.21) WILD-TYPE    130    121    112
D19V7, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                           94                            130
  CLUS_2                           29                            121
  CLUS_3                           33                            112
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(8P11.21) MUTATED       73     51     32
  AMP PEAK 19(8P11.21) WILD-TYPE     90    162    111
D19V8, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                           73                             90
  CLUS_2                           51                            162
  CLUS_3                           32                            111
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(8P11.21) MUTATED       34     87     32
  AMP PEAK 19(8P11.21) WILD-TYPE    107    132    123
D19V9, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                           34                            107
  CLUS_2                           87                            132
  CLUS_3                           32                            123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 19(8P11.21) MUTATED        8     66     28     51
  AMP PEAK 19(8P11.21) WILD-TYPE     47     96     88    131
D19V10, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                            8                             47
  CLUS_2                           66                             96
  CLUS_3                           28                             88
  CLUS_4                           51                            131
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(8P11.21) MUTATED       31     71     26
  AMP PEAK 19(8P11.21) WILD-TYPE     90    106     68
D19V11, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                           31                             90
  CLUS_2                           71                            106
  CLUS_3                           26                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 19(8P11.21) MUTATED       70     29     29
  AMP PEAK 19(8P11.21) WILD-TYPE    101     79     84
D19V12, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                           70                            101
  CLUS_2                           29                             79
  CLUS_3                           29                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = AMP PEAK 20(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(8Q24.21) MUTATED        1      8      3      0
  AMP PEAK 20(8Q24.21) WILD-TYPE     13      9      9     10
D20V1, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            8                              9
  CLUS_3                            3                              9
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(8Q24.21) MUTATED        4      5      1      0      2
  AMP PEAK 20(8Q24.21) WILD-TYPE     10      4      6      7     14
D20V2, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            5                              4
  CLUS_3                            1                              6
  CLUS_4                            0                              7
  CLUS_5                            2                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 20(8Q24.21) MUTATED       46     27    114     12      3
  AMP PEAK 20(8Q24.21) WILD-TYPE    259     21     40      0      2
D20V3, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                           46                            259
  CLUS_2                           27                             21
  CLUS_3                          114                             40
  CLUS_4                           12                              0
  CLUS_5                            3                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(8Q24.21) MUTATED       95     32     47
  AMP PEAK 20(8Q24.21) WILD-TYPE     63     54    119
D20V4, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                           95                             63
  CLUS_2                           32                             54
  CLUS_3                           47                            119
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 20(8Q24.21) MUTATED       12     14      8      2      2     14
  AMP PEAK 20(8Q24.21) WILD-TYPE     29     23     31     10     39     10
D20V5, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                           12                             29
  CLUS_2                           14                             23
  CLUS_3                            8                             31
  CLUS_4                            2                             10
  CLUS_5                            2                             39
  CLUS_6                           14                             10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(8Q24.21) MUTATED       19     18      6      9
  AMP PEAK 20(8Q24.21) WILD-TYPE     48     49     37      8
D20V6, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                           19                             48
  CLUS_2                           18                             49
  CLUS_3                            6                             37
  CLUS_4                            9                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(8Q24.21) MUTATED      133     30     38
  AMP PEAK 20(8Q24.21) WILD-TYPE     91    120    107
D20V7, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                          133                             91
  CLUS_2                           30                            120
  CLUS_3                           38                            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(8Q24.21) MUTATED      107     55     39
  AMP PEAK 20(8Q24.21) WILD-TYPE     56    158    104
D20V8, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                          107                             56
  CLUS_2                           55                            158
  CLUS_3                           39                            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(8Q24.21) MUTATED       35    127     37
  AMP PEAK 20(8Q24.21) WILD-TYPE    106     92    118
D20V9, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                           35                            106
  CLUS_2                          127                             92
  CLUS_3                           37                            118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 20(8Q24.21) MUTATED        8    101     31     59
  AMP PEAK 20(8Q24.21) WILD-TYPE     47     61     85    123
D20V10, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                            8                             47
  CLUS_2                          101                             61
  CLUS_3                           31                             85
  CLUS_4                           59                            123
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(8Q24.21) MUTATED       34     93     40
  AMP PEAK 20(8Q24.21) WILD-TYPE     87     84     54
D20V11, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                           34                             87
  CLUS_2                           93                             84
  CLUS_3                           40                             54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 20(8Q24.21) MUTATED       88     33     46
  AMP PEAK 20(8Q24.21) WILD-TYPE     83     75     67
D20V12, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                           88                             83
  CLUS_2                           33                             75
  CLUS_3                           46                             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AMP PEAK 21(8Q24.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(8Q24.21) MUTATED        1      9      2      0
  AMP PEAK 21(8Q24.21) WILD-TYPE     13      8     10     10
D21V1, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            9                              8
  CLUS_3                            2                             10
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(8Q24.21) MUTATED        4      6      0      0      2
  AMP PEAK 21(8Q24.21) WILD-TYPE     10      3      7      7     14
D21V2, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            6                              3
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            2                             14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 21(8Q24.21) MUTATED       49     28    116     12      3
  AMP PEAK 21(8Q24.21) WILD-TYPE    256     20     38      0      2
D21V3, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                           49                            256
  CLUS_2                           28                             20
  CLUS_3                          116                             38
  CLUS_4                           12                              0
  CLUS_5                            3                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(8Q24.21) MUTATED       95     31     52
  AMP PEAK 21(8Q24.21) WILD-TYPE     63     55    114
D21V4, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                           95                             63
  CLUS_2                           31                             55
  CLUS_3                           52                            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 21(8Q24.21) MUTATED       12     17      7      2      2     16
  AMP PEAK 21(8Q24.21) WILD-TYPE     29     20     32     10     39      8
D21V5, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                           12                             29
  CLUS_2                           17                             20
  CLUS_3                            7                             32
  CLUS_4                            2                             10
  CLUS_5                            2                             39
  CLUS_6                           16                              8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(8Q24.21) MUTATED       23     16      7     10
  AMP PEAK 21(8Q24.21) WILD-TYPE     44     51     36      7
D21V6, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                           23                             44
  CLUS_2                           16                             51
  CLUS_3                            7                             36
  CLUS_4                           10                              7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(8Q24.21) MUTATED      135     33     39
  AMP PEAK 21(8Q24.21) WILD-TYPE     89    117    106
D21V7, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                          135                             89
  CLUS_2                           33                            117
  CLUS_3                           39                            106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(8Q24.21) MUTATED      110     57     40
  AMP PEAK 21(8Q24.21) WILD-TYPE     53    156    103
D21V8, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                          110                             53
  CLUS_2                           57                            156
  CLUS_3                           40                            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(8Q24.21) MUTATED       35    132     37
  AMP PEAK 21(8Q24.21) WILD-TYPE    106     87    118
D21V9, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                           35                            106
  CLUS_2                          132                             87
  CLUS_3                           37                            118
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 21(8Q24.21) MUTATED        9    102     33     60
  AMP PEAK 21(8Q24.21) WILD-TYPE     46     60     83    122
D21V10, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                            9                             46
  CLUS_2                          102                             60
  CLUS_3                           33                             83
  CLUS_4                           60                            122
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(8Q24.21) MUTATED       37     97     38
  AMP PEAK 21(8Q24.21) WILD-TYPE     84     80     56
D21V11, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                           37                             84
  CLUS_2                           97                             80
  CLUS_3                           38                             56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 21(8Q24.21) MUTATED       94     35     43
  AMP PEAK 21(8Q24.21) WILD-TYPE     77     73     70
D21V12, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                           94                             77
  CLUS_2                           35                             73
  CLUS_3                           43                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = AMP PEAK 22(9P24.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(9P24.2) MUTATED        3      4      0      0
  AMP PEAK 22(9P24.2) WILD-TYPE     11     13     12     10
D22V1, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           4                            13
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(9P24.2) MUTATED        4      2      1      0      0
  AMP PEAK 22(9P24.2) WILD-TYPE     10      7      6      7     16
D22V2, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                           4                            10
  CLUS_2                           2                             7
  CLUS_3                           1                             6
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 22(9P24.2) MUTATED        5      3     55      0      0
  AMP PEAK 22(9P24.2) WILD-TYPE    300     45     99     12      5
D22V3, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                           5                           300
  CLUS_2                           3                            45
  CLUS_3                          55                            99
  CLUS_4                           0                            12
  CLUS_5                           0                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(9P24.2) MUTATED       40      7      5
  AMP PEAK 22(9P24.2) WILD-TYPE    118     79    161
D22V4, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                          40                           118
  CLUS_2                           7                            79
  CLUS_3                           5                           161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 22(9P24.2) MUTATED        5      9      0      0      1      1
  AMP PEAK 22(9P24.2) WILD-TYPE     36     28     39     12     40     23
D22V5, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                           5                            36
  CLUS_2                           9                            28
  CLUS_3                           0                            39
  CLUS_4                           0                            12
  CLUS_5                           1                            40
  CLUS_6                           1                            23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(9P24.2) MUTATED       12      2      2      0
  AMP PEAK 22(9P24.2) WILD-TYPE     55     65     41     17
D22V6, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                          12                            55
  CLUS_2                           2                            65
  CLUS_3                           2                            41
  CLUS_4                           0                            17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(9P24.2) MUTATED       55      3      5
  AMP PEAK 22(9P24.2) WILD-TYPE    169    147    140
D22V7, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                          55                           169
  CLUS_2                           3                           147
  CLUS_3                           5                           140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(9P24.2) MUTATED       44     14      5
  AMP PEAK 22(9P24.2) WILD-TYPE    119    199    138
D22V8, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                          44                           119
  CLUS_2                          14                           199
  CLUS_3                           5                           138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(9P24.2) MUTATED        7     53      2
  AMP PEAK 22(9P24.2) WILD-TYPE    134    166    153
D22V9, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                           7                           134
  CLUS_2                          53                           166
  CLUS_3                           2                           153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 22(9P24.2) MUTATED        2     45      1     14
  AMP PEAK 22(9P24.2) WILD-TYPE     53    117    115    168
D22V10, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                           2                            53
  CLUS_2                          45                           117
  CLUS_3                           1                           115
  CLUS_4                          14                           168
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(9P24.2) MUTATED        6     33     11
  AMP PEAK 22(9P24.2) WILD-TYPE    115    144     83
D22V11, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                           6                           115
  CLUS_2                          33                           144
  CLUS_3                          11                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 22(9P24.2) MUTATED       31      5     14
  AMP PEAK 22(9P24.2) WILD-TYPE    140    103     99
D22V12, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                          31                           140
  CLUS_2                           5                           103
  CLUS_3                          14                            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = AMP PEAK 23(9Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(9Q34.3) MUTATED        0      4      1      1
  AMP PEAK 23(9Q34.3) WILD-TYPE     14     13     11      9
D23V1, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           4                            13
  CLUS_3                           1                            11
  CLUS_4                           1                             9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(9Q34.3) MUTATED        0      4      1      0      1
  AMP PEAK 23(9Q34.3) WILD-TYPE     14      5      6      7     15
D23V2, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           4                             5
  CLUS_3                           1                             6
  CLUS_4                           0                             7
  CLUS_5                           1                            15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 23(9Q34.3) MUTATED        3      1     33      0      0
  AMP PEAK 23(9Q34.3) WILD-TYPE    302     47    121     12      5
D23V3, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                           3                           302
  CLUS_2                           1                            47
  CLUS_3                          33                           121
  CLUS_4                           0                            12
  CLUS_5                           0                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(9Q34.3) MUTATED       20      6      2
  AMP PEAK 23(9Q34.3) WILD-TYPE    138     80    164
D23V4, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                          20                           138
  CLUS_2                           6                            80
  CLUS_3                           2                           164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 23(9Q34.3) MUTATED        2      4      0      0      2      2
  AMP PEAK 23(9Q34.3) WILD-TYPE     39     33     39     12     39     22
D23V5, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                           2                            39
  CLUS_2                           4                            33
  CLUS_3                           0                            39
  CLUS_4                           0                            12
  CLUS_5                           2                            39
  CLUS_6                           2                            22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(9Q34.3) MUTATED        5      3      1      1
  AMP PEAK 23(9Q34.3) WILD-TYPE     62     64     42     16
D23V6, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                           5                            62
  CLUS_2                           3                            64
  CLUS_3                           1                            42
  CLUS_4                           1                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(9Q34.3) MUTATED       32      3      1
  AMP PEAK 23(9Q34.3) WILD-TYPE    192    147    144
D23V7, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                          32                           192
  CLUS_2                           3                           147
  CLUS_3                           1                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(9Q34.3) MUTATED       30      4      2
  AMP PEAK 23(9Q34.3) WILD-TYPE    133    209    141
D23V8, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                          30                           133
  CLUS_2                           4                           209
  CLUS_3                           2                           141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(9Q34.3) MUTATED        4     26      3
  AMP PEAK 23(9Q34.3) WILD-TYPE    137    193    152
D23V9, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                           4                           137
  CLUS_2                          26                           193
  CLUS_3                           3                           152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 23(9Q34.3) MUTATED        1     24      2      6
  AMP PEAK 23(9Q34.3) WILD-TYPE     54    138    114    176
D23V10, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                           1                            54
  CLUS_2                          24                           138
  CLUS_3                           2                           114
  CLUS_4                           6                           176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(9Q34.3) MUTATED        3     18      8
  AMP PEAK 23(9Q34.3) WILD-TYPE    118    159     86
D23V11, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                           3                           118
  CLUS_2                          18                           159
  CLUS_3                           8                            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 23(9Q34.3) MUTATED       19      3      7
  AMP PEAK 23(9Q34.3) WILD-TYPE    152    105    106
D23V12, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                          19                           152
  CLUS_2                           3                           105
  CLUS_3                           7                           106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = AMP PEAK 24(10Q22.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(10Q22.2) MUTATED        2      7      8      2
  AMP PEAK 24(10Q22.2) WILD-TYPE     12     10      4      8
D24V1, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            7                             10
  CLUS_3                            8                              4
  CLUS_4                            2                              8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(10Q22.2) MUTATED        4      5      2      0      8
  AMP PEAK 24(10Q22.2) WILD-TYPE     10      4      5      7      8
D24V2, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            5                              4
  CLUS_3                            2                              5
  CLUS_4                            0                              7
  CLUS_5                            8                              8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 24(10Q22.2) MUTATED       47     25     60      6      2
  AMP PEAK 24(10Q22.2) WILD-TYPE    258     23     94      6      3
D24V3, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                           47                            258
  CLUS_2                           25                             23
  CLUS_3                           60                             94
  CLUS_4                            6                              6
  CLUS_5                            2                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(10Q22.2) MUTATED       47     18     41
  AMP PEAK 24(10Q22.2) WILD-TYPE    111     68    125
D24V4, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                           47                            111
  CLUS_2                           18                             68
  CLUS_3                           41                            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 24(10Q22.2) MUTATED        9      9     10      2     14     11
  AMP PEAK 24(10Q22.2) WILD-TYPE     32     28     29     10     27     13
D24V5, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                            9                             32
  CLUS_2                            9                             28
  CLUS_3                           10                             29
  CLUS_4                            2                             10
  CLUS_5                           14                             27
  CLUS_6                           11                             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(10Q22.2) MUTATED       18     20     10      7
  AMP PEAK 24(10Q22.2) WILD-TYPE     49     47     33     10
D24V6, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                           18                             49
  CLUS_2                           20                             47
  CLUS_3                           10                             33
  CLUS_4                            7                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(10Q22.2) MUTATED       71     29     38
  AMP PEAK 24(10Q22.2) WILD-TYPE    153    121    107
D24V7, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                           71                            153
  CLUS_2                           29                            121
  CLUS_3                           38                            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(10Q22.2) MUTATED       57     44     37
  AMP PEAK 24(10Q22.2) WILD-TYPE    106    169    106
D24V8, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                           57                            106
  CLUS_2                           44                            169
  CLUS_3                           37                            106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(10Q22.2) MUTATED       33     64     41
  AMP PEAK 24(10Q22.2) WILD-TYPE    108    155    114
D24V9, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                           33                            108
  CLUS_2                           64                            155
  CLUS_3                           41                            114
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 24(10Q22.2) MUTATED       20     47     36     35
  AMP PEAK 24(10Q22.2) WILD-TYPE     35    115     80    147
D24V10, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                           20                             35
  CLUS_2                           47                            115
  CLUS_3                           36                             80
  CLUS_4                           35                            147
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(10Q22.2) MUTATED       35     46     17
  AMP PEAK 24(10Q22.2) WILD-TYPE     86    131     77
D24V11, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                           35                             86
  CLUS_2                           46                            131
  CLUS_3                           17                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 24(10Q22.2) MUTATED       47     32     19
  AMP PEAK 24(10Q22.2) WILD-TYPE    124     76     94
D24V12, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                           47                            124
  CLUS_2                           32                             76
  CLUS_3                           19                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = AMP PEAK 25(11P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(11P11.2) MUTATED        0      6      0      0
  AMP PEAK 25(11P11.2) WILD-TYPE     14     11     12     10
D25V1, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            6                             11
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(11P11.2) MUTATED        2      4      0      0      0
  AMP PEAK 25(11P11.2) WILD-TYPE     12      5      7      7     16
D25V2, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            4                              5
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 25(11P11.2) MUTATED        1      7     40      1      0
  AMP PEAK 25(11P11.2) WILD-TYPE    304     41    114     11      5
D25V3, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                            1                            304
  CLUS_2                            7                             41
  CLUS_3                           40                            114
  CLUS_4                            1                             11
  CLUS_5                            0                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(11P11.2) MUTATED       28      9      4
  AMP PEAK 25(11P11.2) WILD-TYPE    130     77    162
D25V4, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                           28                            130
  CLUS_2                            9                             77
  CLUS_3                            4                            162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 25(11P11.2) MUTATED        4      4      1      0      1      6
  AMP PEAK 25(11P11.2) WILD-TYPE     37     33     38     12     40     18
D25V5, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                            4                             37
  CLUS_2                            4                             33
  CLUS_3                            1                             38
  CLUS_4                            0                             12
  CLUS_5                            1                             40
  CLUS_6                            6                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(11P11.2) MUTATED        6      5      1      4
  AMP PEAK 25(11P11.2) WILD-TYPE     61     62     42     13
D25V6, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                            6                             61
  CLUS_2                            5                             62
  CLUS_3                            1                             42
  CLUS_4                            4                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(11P11.2) MUTATED       40      3      6
  AMP PEAK 25(11P11.2) WILD-TYPE    184    147    139
D25V7, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                           40                            184
  CLUS_2                            3                            147
  CLUS_3                            6                            139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(11P11.2) MUTATED       35      8      6
  AMP PEAK 25(11P11.2) WILD-TYPE    128    205    137
D25V8, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                           35                            128
  CLUS_2                            8                            205
  CLUS_3                            6                            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(11P11.2) MUTATED        3     39      6
  AMP PEAK 25(11P11.2) WILD-TYPE    138    180    149
D25V9, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                            3                            138
  CLUS_2                           39                            180
  CLUS_3                            6                            149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 25(11P11.2) MUTATED        2     32      4     10
  AMP PEAK 25(11P11.2) WILD-TYPE     53    130    112    172
D25V10, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                            2                             53
  CLUS_2                           32                            130
  CLUS_3                            4                            112
  CLUS_4                           10                            172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(11P11.2) MUTATED        5     23     10
  AMP PEAK 25(11P11.2) WILD-TYPE    116    154     84
D25V11, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                            5                            116
  CLUS_2                           23                            154
  CLUS_3                           10                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 25(11P11.2) MUTATED       18      5     15
  AMP PEAK 25(11P11.2) WILD-TYPE    153    103     98
D25V12, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                           18                            153
  CLUS_2                            5                            103
  CLUS_3                           15                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = AMP PEAK 26(11Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(11Q13.2) MUTATED        0      6      0      0
  AMP PEAK 26(11Q13.2) WILD-TYPE     14     11     12     10
D26V1, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            6                             11
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(11Q13.2) MUTATED        2      4      0      0      0
  AMP PEAK 26(11Q13.2) WILD-TYPE     12      5      7      7     16
D26V2, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            4                              5
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 26(11Q13.2) MUTATED        6     10     54      1      0
  AMP PEAK 26(11Q13.2) WILD-TYPE    299     38    100     11      5
D26V3, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                            6                            299
  CLUS_2                           10                             38
  CLUS_3                           54                            100
  CLUS_4                            1                             11
  CLUS_5                            0                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(11Q13.2) MUTATED       40      8     12
  AMP PEAK 26(11Q13.2) WILD-TYPE    118     78    154
D26V4, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                           40                            118
  CLUS_2                            8                             78
  CLUS_3                           12                            154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 26(11Q13.2) MUTATED        4      6      3      1      1      6
  AMP PEAK 26(11Q13.2) WILD-TYPE     37     31     36     11     40     18
D26V5, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                            4                             37
  CLUS_2                            6                             31
  CLUS_3                            3                             36
  CLUS_4                            1                             11
  CLUS_5                            1                             40
  CLUS_6                            6                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(11Q13.2) MUTATED        5      9      3      4
  AMP PEAK 26(11Q13.2) WILD-TYPE     62     58     40     13
D26V6, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                            5                             62
  CLUS_2                            9                             58
  CLUS_3                            3                             40
  CLUS_4                            4                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(11Q13.2) MUTATED       50      6     14
  AMP PEAK 26(11Q13.2) WILD-TYPE    174    144    131
D26V7, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                           50                            174
  CLUS_2                            6                            144
  CLUS_3                           14                            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(11Q13.2) MUTATED       38     18     14
  AMP PEAK 26(11Q13.2) WILD-TYPE    125    195    129
D26V8, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                           38                            125
  CLUS_2                           18                            195
  CLUS_3                           14                            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(11Q13.2) MUTATED        8     46     15
  AMP PEAK 26(11Q13.2) WILD-TYPE    133    173    140
D26V9, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                            8                            133
  CLUS_2                           46                            173
  CLUS_3                           15                            140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 26(11Q13.2) MUTATED        2     38      9     20
  AMP PEAK 26(11Q13.2) WILD-TYPE     53    124    107    162
D26V10, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                            2                             53
  CLUS_2                           38                            124
  CLUS_3                            9                            107
  CLUS_4                           20                            162
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(11Q13.2) MUTATED       13     34     10
  AMP PEAK 26(11Q13.2) WILD-TYPE    108    143     84
D26V11, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                           13                            108
  CLUS_2                           34                            143
  CLUS_3                           10                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 26(11Q13.2) MUTATED       34     12     11
  AMP PEAK 26(11Q13.2) WILD-TYPE    137     96    102
D26V12, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                           34                            137
  CLUS_2                           12                             96
  CLUS_3                           11                            102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = AMP PEAK 27(11Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(11Q14.1) MUTATED        1      3      0      0
  AMP PEAK 27(11Q14.1) WILD-TYPE     13     14     12     10
D27V1, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                             14
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(11Q14.1) MUTATED        2      2      0      0      0
  AMP PEAK 27(11Q14.1) WILD-TYPE     12      7      7      7     16
D27V2, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            2                              7
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 27(11Q14.1) MUTATED        4      7     44      1      0
  AMP PEAK 27(11Q14.1) WILD-TYPE    301     41    110     11      5
D27V3, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                            4                            301
  CLUS_2                            7                             41
  CLUS_3                           44                            110
  CLUS_4                            1                             11
  CLUS_5                            0                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(11Q14.1) MUTATED       31      7      9
  AMP PEAK 27(11Q14.1) WILD-TYPE    127     79    157
D27V4, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                           31                            127
  CLUS_2                            7                             79
  CLUS_3                            9                            157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 27(11Q14.1) MUTATED        3      3      3      1      1      4
  AMP PEAK 27(11Q14.1) WILD-TYPE     38     34     36     11     40     20
D27V5, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                            3                             38
  CLUS_2                            3                             34
  CLUS_3                            3                             36
  CLUS_4                            1                             11
  CLUS_5                            1                             40
  CLUS_6                            4                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(11Q14.1) MUTATED        3      7      2      3
  AMP PEAK 27(11Q14.1) WILD-TYPE     64     60     41     14
D27V6, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                            3                             64
  CLUS_2                            7                             60
  CLUS_3                            2                             41
  CLUS_4                            3                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(11Q14.1) MUTATED       41      6      8
  AMP PEAK 27(11Q14.1) WILD-TYPE    183    144    137
D27V7, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                           41                            183
  CLUS_2                            6                            144
  CLUS_3                            8                            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(11Q14.1) MUTATED       33     13      9
  AMP PEAK 27(11Q14.1) WILD-TYPE    130    200    134
D27V8, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                           33                            130
  CLUS_2                           13                            200
  CLUS_3                            9                            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(11Q14.1) MUTATED        5     39     12
  AMP PEAK 27(11Q14.1) WILD-TYPE    136    180    143
D27V9, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                            5                            136
  CLUS_2                           39                            180
  CLUS_3                           12                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 27(11Q14.1) MUTATED        2     32      7     15
  AMP PEAK 27(11Q14.1) WILD-TYPE     53    130    109    167
D27V10, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                            2                             53
  CLUS_2                           32                            130
  CLUS_3                            7                            109
  CLUS_4                           15                            167
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(11Q14.1) MUTATED       10     28      7
  AMP PEAK 27(11Q14.1) WILD-TYPE    111    149     87
D27V11, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                           10                            111
  CLUS_2                           28                            149
  CLUS_3                            7                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 27(11Q14.1) MUTATED       25     10     10
  AMP PEAK 27(11Q14.1) WILD-TYPE    146     98    103
D27V12, multiclass
        clus
vv       AMP PEAK 27(11Q14.1) MUTATED AMP PEAK 27(11Q14.1) WILD-TYPE
  CLUS_1                           25                            146
  CLUS_2                           10                             98
  CLUS_3                           10                            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = AMP PEAK 28(12P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(12P12.1) MUTATED        1      3      3      0
  AMP PEAK 28(12P12.1) WILD-TYPE     13     14      9     10
D28V1, multiclass
        clus
vv       AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                             14
  CLUS_3                            3                              9
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(12P12.1) MUTATED        3      2      1      0      1
  AMP PEAK 28(12P12.1) WILD-TYPE     11      7      6      7     15
D28V2, multiclass
        clus
vv       AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            2                              7
  CLUS_3                            1                              6
  CLUS_4                            0                              7
  CLUS_5                            1                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 28(12P12.1) MUTATED       14     14     54      2      3
  AMP PEAK 28(12P12.1) WILD-TYPE    291     34    100     10      2
D28V3, multiclass
        clus
vv       AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                           14                            291
  CLUS_2                           14                             34
  CLUS_3                           54                            100
  CLUS_4                            2                             10
  CLUS_5                            3                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(12P12.1) MUTATED       49     12     10
  AMP PEAK 28(12P12.1) WILD-TYPE    109     74    156
D28V4, multiclass
        clus
vv       AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                           49                            109
  CLUS_2                           12                             74
  CLUS_3                           10                            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 28(12P12.1) MUTATED        5      7      5      0      4      5
  AMP PEAK 28(12P12.1) WILD-TYPE     36     30     34     12     37     19
D28V5, multiclass
        clus
vv       AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                            5                             36
  CLUS_2                            7                             30
  CLUS_3                            5                             34
  CLUS_4                            0                             12
  CLUS_5                            4                             37
  CLUS_6                            5                             19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(12P12.1) MUTATED       10      9      5      2
  AMP PEAK 28(12P12.1) WILD-TYPE     57     58     38     15
D28V6, multiclass
        clus
vv       AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                           10                             57
  CLUS_2                            9                             58
  CLUS_3                            5                             38
  CLUS_4                            2                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(12P12.1) MUTATED       63     12     11
  AMP PEAK 28(12P12.1) WILD-TYPE    161    138    134
D28V7, multiclass
        clus
vv       AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                           63                            161
  CLUS_2                           12                            138
  CLUS_3                           11                            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(12P12.1) MUTATED       52     22     12
  AMP PEAK 28(12P12.1) WILD-TYPE    111    191    131
D28V8, multiclass
        clus
vv       AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                           52                            111
  CLUS_2                           22                            191
  CLUS_3                           12                            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(12P12.1) MUTATED       14     61     12
  AMP PEAK 28(12P12.1) WILD-TYPE    127    158    143
D28V9, multiclass
        clus
vv       AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                           14                            127
  CLUS_2                           61                            158
  CLUS_3                           12                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 28(12P12.1) MUTATED        6     53     11     17
  AMP PEAK 28(12P12.1) WILD-TYPE     49    109    105    165
D28V10, multiclass
        clus
vv       AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                            6                             49
  CLUS_2                           53                            109
  CLUS_3                           11                            105
  CLUS_4                           17                            165
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(12P12.1) MUTATED        8     45     15
  AMP PEAK 28(12P12.1) WILD-TYPE    113    132     79
D28V11, multiclass
        clus
vv       AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                            8                            113
  CLUS_2                           45                            132
  CLUS_3                           15                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 28(12P12.1) MUTATED       41      9     18
  AMP PEAK 28(12P12.1) WILD-TYPE    130     99     95
D28V12, multiclass
        clus
vv       AMP PEAK 28(12P12.1) MUTATED AMP PEAK 28(12P12.1) WILD-TYPE
  CLUS_1                           41                            130
  CLUS_2                            9                             99
  CLUS_3                           18                             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = AMP PEAK 29(12Q13.11) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(12Q13.11) MUTATED        2      4      3      0
  AMP PEAK 29(12Q13.11) WILD-TYPE     12     13      9     10
D29V1, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                             2                              12
  CLUS_2                             4                              13
  CLUS_3                             3                               9
  CLUS_4                             0                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(12Q13.11) MUTATED        4      3      1      0      1
  AMP PEAK 29(12Q13.11) WILD-TYPE     10      6      6      7     15
D29V2, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                             4                              10
  CLUS_2                             3                               6
  CLUS_3                             1                               6
  CLUS_4                             0                               7
  CLUS_5                             1                              15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 29(12Q13.11) MUTATED       11     15     55      1      3
  AMP PEAK 29(12Q13.11) WILD-TYPE    294     33     99     11      2
D29V3, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                            11                             294
  CLUS_2                            15                              33
  CLUS_3                            55                              99
  CLUS_4                             1                              11
  CLUS_5                             3                               2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(12Q13.11) MUTATED       47     15      7
  AMP PEAK 29(12Q13.11) WILD-TYPE    111     71    159
D29V4, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                            47                             111
  CLUS_2                            15                              71
  CLUS_3                             7                             159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 29(12Q13.11) MUTATED        5      7      4      0      3      3
  AMP PEAK 29(12Q13.11) WILD-TYPE     36     30     35     12     38     21
D29V5, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                             5                              36
  CLUS_2                             7                              30
  CLUS_3                             4                              35
  CLUS_4                             0                              12
  CLUS_5                             3                              38
  CLUS_6                             3                              21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(12Q13.11) MUTATED       10      7      3      2
  AMP PEAK 29(12Q13.11) WILD-TYPE     57     60     40     15
D29V6, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                            10                              57
  CLUS_2                             7                              60
  CLUS_3                             3                              40
  CLUS_4                             2                              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(12Q13.11) MUTATED       64      9     10
  AMP PEAK 29(12Q13.11) WILD-TYPE    160    141    135
D29V7, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                            64                             160
  CLUS_2                             9                             141
  CLUS_3                            10                             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(12Q13.11) MUTATED       55     18     10
  AMP PEAK 29(12Q13.11) WILD-TYPE    108    195    133
D29V8, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                            55                             108
  CLUS_2                            18                             195
  CLUS_3                            10                             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(12Q13.11) MUTATED       12     62     11
  AMP PEAK 29(12Q13.11) WILD-TYPE    129    157    144
D29V9, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                            12                             129
  CLUS_2                            62                             157
  CLUS_3                            11                             144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 29(12Q13.11) MUTATED        4     53     11     17
  AMP PEAK 29(12Q13.11) WILD-TYPE     51    109    105    165
D29V10, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                             4                              51
  CLUS_2                            53                             109
  CLUS_3                            11                             105
  CLUS_4                            17                             165
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(12Q13.11) MUTATED        7     42     16
  AMP PEAK 29(12Q13.11) WILD-TYPE    114    135     78
D29V11, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                             7                             114
  CLUS_2                            42                             135
  CLUS_3                            16                              78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 29(12Q13.11) MUTATED       39      9     17
  AMP PEAK 29(12Q13.11) WILD-TYPE    132     99     96
D29V12, multiclass
        clus
vv       AMP PEAK 29(12Q13.11) MUTATED AMP PEAK 29(12Q13.11) WILD-TYPE
  CLUS_1                            39                             132
  CLUS_2                             9                              99
  CLUS_3                            17                              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = AMP PEAK 30(12Q13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(12Q13.2) MUTATED        2      5      4      0
  AMP PEAK 30(12Q13.2) WILD-TYPE     12     12      8     10
D30V1, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            5                             12
  CLUS_3                            4                              8
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 30(12Q13.2) MUTATED        4      4      2      0      1
  AMP PEAK 30(12Q13.2) WILD-TYPE     10      5      5      7     15
D30V2, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            4                              5
  CLUS_3                            2                              5
  CLUS_4                            0                              7
  CLUS_5                            1                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 30(12Q13.2) MUTATED       14     15     65      1      3
  AMP PEAK 30(12Q13.2) WILD-TYPE    291     33     89     11      2
D30V3, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                           14                            291
  CLUS_2                           15                             33
  CLUS_3                           65                             89
  CLUS_4                            1                             11
  CLUS_5                            3                              2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(12Q13.2) MUTATED       53     14     13
  AMP PEAK 30(12Q13.2) WILD-TYPE    105     72    153
D30V4, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                           53                            105
  CLUS_2                           14                             72
  CLUS_3                           13                            153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 30(12Q13.2) MUTATED        6      8      4      0      3      4
  AMP PEAK 30(12Q13.2) WILD-TYPE     35     29     35     12     38     20
D30V5, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                            6                             35
  CLUS_2                            8                             29
  CLUS_3                            4                             35
  CLUS_4                            0                             12
  CLUS_5                            3                             38
  CLUS_6                            4                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(12Q13.2) MUTATED       10     10      3      2
  AMP PEAK 30(12Q13.2) WILD-TYPE     57     57     40     15
D30V6, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                           10                             57
  CLUS_2                           10                             57
  CLUS_3                            3                             40
  CLUS_4                            2                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(12Q13.2) MUTATED       73      9     14
  AMP PEAK 30(12Q13.2) WILD-TYPE    151    141    131
D30V7, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                           73                            151
  CLUS_2                            9                            141
  CLUS_3                           14                            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(12Q13.2) MUTATED       60     22     14
  AMP PEAK 30(12Q13.2) WILD-TYPE    103    191    129
D30V8, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                           60                            103
  CLUS_2                           22                            191
  CLUS_3                           14                            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(12Q13.2) MUTATED       13     68     15
  AMP PEAK 30(12Q13.2) WILD-TYPE    128    151    140
D30V9, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                           13                            128
  CLUS_2                           68                            151
  CLUS_3                           15                            140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 30(12Q13.2) MUTATED        4     59     14     19
  AMP PEAK 30(12Q13.2) WILD-TYPE     51    103    102    163
D30V10, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                            4                             51
  CLUS_2                           59                            103
  CLUS_3                           14                            102
  CLUS_4                           19                            163
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(12Q13.2) MUTATED       11     52     14
  AMP PEAK 30(12Q13.2) WILD-TYPE    110    125     80
D30V11, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                           11                            110
  CLUS_2                           52                            125
  CLUS_3                           14                             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 30(12Q13.2) MUTATED       47     13     17
  AMP PEAK 30(12Q13.2) WILD-TYPE    124     95     96
D30V12, multiclass
        clus
vv       AMP PEAK 30(12Q13.2) MUTATED AMP PEAK 30(12Q13.2) WILD-TYPE
  CLUS_1                           47                            124
  CLUS_2                           13                             95
  CLUS_3                           17                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = AMP PEAK 31(13Q34) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 31(13Q34) MUTATED        1      2      0      0
  AMP PEAK 31(13Q34) WILD-TYPE     13     15     12     10
D31V1, multiclass
        clus
vv       AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                          1                           13
  CLUS_2                          2                           15
  CLUS_3                          0                           12
  CLUS_4                          0                           10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 31(13Q34) MUTATED        1      2      0      0      0
  AMP PEAK 31(13Q34) WILD-TYPE     13      7      7      7     16
D31V2, multiclass
        clus
vv       AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                          1                           13
  CLUS_2                          2                            7
  CLUS_3                          0                            7
  CLUS_4                          0                            7
  CLUS_5                          0                           16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 31(13Q34) MUTATED        4      0     50      1      1
  AMP PEAK 31(13Q34) WILD-TYPE    301     48    104     11      4
D31V3, multiclass
        clus
vv       AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                          4                          301
  CLUS_2                          0                           48
  CLUS_3                         50                          104
  CLUS_4                          1                           11
  CLUS_5                          1                            4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(13Q34) MUTATED       36     11      4
  AMP PEAK 31(13Q34) WILD-TYPE    122     75    162
D31V4, multiclass
        clus
vv       AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                         36                          122
  CLUS_2                         11                           75
  CLUS_3                          4                          162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 31(13Q34) MUTATED        2      4      0      0      1      2
  AMP PEAK 31(13Q34) WILD-TYPE     39     33     39     12     40     22
D31V5, multiclass
        clus
vv       AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                          2                           39
  CLUS_2                          4                           33
  CLUS_3                          0                           39
  CLUS_4                          0                           12
  CLUS_5                          1                           40
  CLUS_6                          2                           22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 31(13Q34) MUTATED        6      1      0      2
  AMP PEAK 31(13Q34) WILD-TYPE     61     66     43     15
D31V6, multiclass
        clus
vv       AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                          6                           61
  CLUS_2                          1                           66
  CLUS_3                          0                           43
  CLUS_4                          2                           15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(13Q34) MUTATED       50      3      3
  AMP PEAK 31(13Q34) WILD-TYPE    174    147    142
D31V7, multiclass
        clus
vv       AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                         50                          174
  CLUS_2                          3                          147
  CLUS_3                          3                          142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(13Q34) MUTATED       49      5      2
  AMP PEAK 31(13Q34) WILD-TYPE    114    208    141
D31V8, multiclass
        clus
vv       AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                         49                          114
  CLUS_2                          5                          208
  CLUS_3                          2                          141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(13Q34) MUTATED        2     50      4
  AMP PEAK 31(13Q34) WILD-TYPE    139    169    151
D31V9, multiclass
        clus
vv       AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                          2                          139
  CLUS_2                         50                          169
  CLUS_3                          4                          151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 31(13Q34) MUTATED        0     45      5      6
  AMP PEAK 31(13Q34) WILD-TYPE     55    117    111    176
D31V10, multiclass
        clus
vv       AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                          0                           55
  CLUS_2                         45                          117
  CLUS_3                          5                          111
  CLUS_4                          6                          176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(13Q34) MUTATED        4     33     13
  AMP PEAK 31(13Q34) WILD-TYPE    117    144     81
D31V11, multiclass
        clus
vv       AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                          4                          117
  CLUS_2                         33                          144
  CLUS_3                         13                           81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 31(13Q34) MUTATED       28      4     18
  AMP PEAK 31(13Q34) WILD-TYPE    143    104     95
D31V12, multiclass
        clus
vv       AMP PEAK 31(13Q34) MUTATED AMP PEAK 31(13Q34) WILD-TYPE
  CLUS_1                         28                          143
  CLUS_2                          4                          104
  CLUS_3                         18                           95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = AMP PEAK 32(14Q24.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 32(14Q24.3) MUTATED        1      6      1      0
  AMP PEAK 32(14Q24.3) WILD-TYPE     13     11     11     10
D32V1, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            6                             11
  CLUS_3                            1                             11
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 32(14Q24.3) MUTATED        1      5      0      1      1
  AMP PEAK 32(14Q24.3) WILD-TYPE     13      4      7      6     15
D32V2, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            5                              4
  CLUS_3                            0                              7
  CLUS_4                            1                              6
  CLUS_5                            1                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 32(14Q24.3) MUTATED        4      7     49      2      0
  AMP PEAK 32(14Q24.3) WILD-TYPE    301     41    105     10      5
D32V3, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                            4                            301
  CLUS_2                            7                             41
  CLUS_3                           49                            105
  CLUS_4                            2                             10
  CLUS_5                            0                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(14Q24.3) MUTATED       36      8      8
  AMP PEAK 32(14Q24.3) WILD-TYPE    122     78    158
D32V4, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                           36                            122
  CLUS_2                            8                             78
  CLUS_3                            8                            158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 32(14Q24.3) MUTATED        5      5      1      1      0      3
  AMP PEAK 32(14Q24.3) WILD-TYPE     36     32     38     11     41     21
D32V5, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                            5                             36
  CLUS_2                            5                             32
  CLUS_3                            1                             38
  CLUS_4                            1                             11
  CLUS_5                            0                             41
  CLUS_6                            3                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 32(14Q24.3) MUTATED        8      3      2      2
  AMP PEAK 32(14Q24.3) WILD-TYPE     59     64     41     15
D32V6, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                            8                             59
  CLUS_2                            3                             64
  CLUS_3                            2                             41
  CLUS_4                            2                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(14Q24.3) MUTATED       53      1      7
  AMP PEAK 32(14Q24.3) WILD-TYPE    171    149    138
D32V7, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                           53                            171
  CLUS_2                            1                            149
  CLUS_3                            7                            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(14Q24.3) MUTATED       47      7      7
  AMP PEAK 32(14Q24.3) WILD-TYPE    116    206    136
D32V8, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                           47                            116
  CLUS_2                            7                            206
  CLUS_3                            7                            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(14Q24.3) MUTATED        6     46      8
  AMP PEAK 32(14Q24.3) WILD-TYPE    135    173    147
D32V9, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                            6                            135
  CLUS_2                           46                            173
  CLUS_3                            8                            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 32(14Q24.3) MUTATED        0     42      9      9
  AMP PEAK 32(14Q24.3) WILD-TYPE     55    120    107    173
D32V10, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                            0                             55
  CLUS_2                           42                            120
  CLUS_3                            9                            107
  CLUS_4                            9                            173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(14Q24.3) MUTATED       10     28     13
  AMP PEAK 32(14Q24.3) WILD-TYPE    111    149     81
D32V11, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                           10                            111
  CLUS_2                           28                            149
  CLUS_3                           13                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 32(14Q24.3) MUTATED       25      9     17
  AMP PEAK 32(14Q24.3) WILD-TYPE    146     99     96
D32V12, multiclass
        clus
vv       AMP PEAK 32(14Q24.3) MUTATED AMP PEAK 32(14Q24.3) WILD-TYPE
  CLUS_1                           25                            146
  CLUS_2                            9                             99
  CLUS_3                           17                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = AMP PEAK 33(15Q26.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 33(15Q26.3) MUTATED        1      1      0      0
  AMP PEAK 33(15Q26.3) WILD-TYPE     13     16     12     10
D33V1, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 33(15Q26.3) MUTATED"
clus
  AMP PEAK 33(15Q26.3) MUTATED AMP PEAK 33(15Q26.3) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0GA 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GB                     TCGA-A5-A0GE 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GH                     TCGA-A5-A0GM 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GP                     TCGA-A5-A0GU 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A051                     TCGA-AP-A052 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A053                     TCGA-AP-A054 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A056                     TCGA-AP-A05A 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A05D                     TCGA-AP-A05H 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A05J                     TCGA-AP-A05N 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A05P                     TCGA-AP-A0L8 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0L9                     TCGA-AP-A0LD 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LG                     TCGA-AP-A0LH 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LJ                     TCGA-AP-A0LN 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LT                     TCGA-AP-A0LV 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A05S                     TCGA-AX-A05T 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A05U                     TCGA-AX-A05W 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A05Y                     TCGA-AX-A05Z 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A060                     TCGA-AX-A062 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A063                     TCGA-AX-A064 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A06B                     TCGA-AX-A06F 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A06J                     TCGA-AX-A0IW 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A0J1                     TCGA-B5-A0JR 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-B5-A0JZ                     TCGA-B5-A0K0 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-B5-A0K1                     TCGA-B5-A0K4 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-BG-A0LW                     TCGA-BG-A0MI 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-BK-A0C9 
"AMP PEAK 33(15Q26.3) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 33(15Q26.3) MUTATED        2      0      0      0      0
  AMP PEAK 33(15Q26.3) WILD-TYPE     12      9      7      7     16
D33V2, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 33(15Q26.3) MUTATED"
clus
  AMP PEAK 33(15Q26.3) MUTATED AMP PEAK 33(15Q26.3) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0GA 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GB                     TCGA-A5-A0GE 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GH                     TCGA-A5-A0GM 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-A5-A0GP                     TCGA-A5-A0GU 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A051                     TCGA-AP-A052 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A053                     TCGA-AP-A054 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A056                     TCGA-AP-A05A 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A05D                     TCGA-AP-A05H 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A05J                     TCGA-AP-A05N 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A05P                     TCGA-AP-A0L8 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0L9                     TCGA-AP-A0LD 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LG                     TCGA-AP-A0LH 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LJ                     TCGA-AP-A0LN 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AP-A0LT                     TCGA-AP-A0LV 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A05S                     TCGA-AX-A05T 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A05U                     TCGA-AX-A05W 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A05Y                     TCGA-AX-A05Z 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A060                     TCGA-AX-A062 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A063                     TCGA-AX-A064 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A06B                     TCGA-AX-A06F 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A06J                     TCGA-AX-A0IW 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-AX-A0J1                     TCGA-B5-A0JR 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-B5-A0JZ                     TCGA-B5-A0K0 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-B5-A0K1                     TCGA-B5-A0K4 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-BG-A0LW                     TCGA-BG-A0MI 
"AMP PEAK 33(15Q26.3) WILD-TYPE" "AMP PEAK 33(15Q26.3) WILD-TYPE" 
                    TCGA-BK-A0C9 
"AMP PEAK 33(15Q26.3) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 33(15Q26.3) MUTATED        4      4     29      0      0
  AMP PEAK 33(15Q26.3) WILD-TYPE    301     44    125     12      5
D33V3, multiclass
        clus
vv       AMP PEAK 33(15Q26.3) MUTATED AMP PEAK 33(15Q26.3) WILD-TYPE
  CLUS_1                            4                            301
  CLUS_2                            4                             44
  CLUS_3                           29                            125
  CLUS_4                            0                             12
  CLUS_5                            0                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(15Q26.3) MUTATED       20      6      6
  AMP PEAK 33(15Q26.3) WILD-TYPE    138     80    160
D33V4, multiclass
        clus
vv       AMP PEAK 33(15Q26.3) MUTATED AMP PEAK 33(15Q26.3) WILD-TYPE
  CLUS_1                           20                            138
  CLUS_2                            6                             80
  CLUS_3                            6                            160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 33(15Q26.3) MUTATED        4      1      0      0      1      2
  AMP PEAK 33(15Q26.3) WILD-TYPE     37     36     39     12     40     22
D33V5, multiclass
        clus
vv       AMP PEAK 33(15Q26.3) MUTATED AMP PEAK 33(15Q26.3) WILD-TYPE
  CLUS_1                            4                             37
  CLUS_2                            1                             36
  CLUS_3                            0                             39
  CLUS_4                            0                             12
  CLUS_5                            1                             40
  CLUS_6                            2                             22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 33(15Q26.3) MUTATED        5      1      2      0
  AMP PEAK 33(15Q26.3) WILD-TYPE     62     66     41     17
D33V6, multiclass
        clus
vv       AMP PEAK 33(15Q26.3) MUTATED AMP PEAK 33(15Q26.3) WILD-TYPE
  CLUS_1                            5                             62
  CLUS_2                            1                             66
  CLUS_3                            2                             41
  CLUS_4                            0                             17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(15Q26.3) MUTATED       31      4      2
  AMP PEAK 33(15Q26.3) WILD-TYPE    193    146    143
D33V7, multiclass
        clus
vv       AMP PEAK 33(15Q26.3) MUTATED AMP PEAK 33(15Q26.3) WILD-TYPE
  CLUS_1                           31                            193
  CLUS_2                            4                            146
  CLUS_3                            2                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(15Q26.3) MUTATED       26      9      2
  AMP PEAK 33(15Q26.3) WILD-TYPE    137    204    141
D33V8, multiclass
        clus
vv       AMP PEAK 33(15Q26.3) MUTATED AMP PEAK 33(15Q26.3) WILD-TYPE
  CLUS_1                           26                            137
  CLUS_2                            9                            204
  CLUS_3                            2                            141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(15Q26.3) MUTATED        5     30      2
  AMP PEAK 33(15Q26.3) WILD-TYPE    136    189    153
D33V9, multiclass
        clus
vv       AMP PEAK 33(15Q26.3) MUTATED AMP PEAK 33(15Q26.3) WILD-TYPE
  CLUS_1                            5                            136
  CLUS_2                           30                            189
  CLUS_3                            2                            153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 33(15Q26.3) MUTATED        3     26      1      7
  AMP PEAK 33(15Q26.3) WILD-TYPE     52    136    115    175
D33V10, multiclass
        clus
vv       AMP PEAK 33(15Q26.3) MUTATED AMP PEAK 33(15Q26.3) WILD-TYPE
  CLUS_1                            3                             52
  CLUS_2                           26                            136
  CLUS_3                            1                            115
  CLUS_4                            7                            175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(15Q26.3) MUTATED        3     22      6
  AMP PEAK 33(15Q26.3) WILD-TYPE    118    155     88
D33V11, multiclass
        clus
vv       AMP PEAK 33(15Q26.3) MUTATED AMP PEAK 33(15Q26.3) WILD-TYPE
  CLUS_1                            3                            118
  CLUS_2                           22                            155
  CLUS_3                            6                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 33(15Q26.3) MUTATED       18      4      9
  AMP PEAK 33(15Q26.3) WILD-TYPE    153    104    104
D33V12, multiclass
        clus
vv       AMP PEAK 33(15Q26.3) MUTATED AMP PEAK 33(15Q26.3) WILD-TYPE
  CLUS_1                           18                            153
  CLUS_2                            4                            104
  CLUS_3                            9                            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = AMP PEAK 34(16P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 34(16P11.2) MUTATED        0      5      0      0
  AMP PEAK 34(16P11.2) WILD-TYPE     14     12     12     10
D34V1, multiclass
        clus
vv       AMP PEAK 34(16P11.2) MUTATED AMP PEAK 34(16P11.2) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            5                             12
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 34(16P11.2) MUTATED        1      4      0      0      0
  AMP PEAK 34(16P11.2) WILD-TYPE     13      5      7      7     16
D34V2, multiclass
        clus
vv       AMP PEAK 34(16P11.2) MUTATED AMP PEAK 34(16P11.2) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            4                              5
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 34(16P11.2) MUTATED        2      6     54      1      0
  AMP PEAK 34(16P11.2) WILD-TYPE    303     42    100     11      5
D34V3, multiclass
        clus
vv       AMP PEAK 34(16P11.2) MUTATED AMP PEAK 34(16P11.2) WILD-TYPE
  CLUS_1                            2                            303
  CLUS_2                            6                             42
  CLUS_3                           54                            100
  CLUS_4                            1                             11
  CLUS_5                            0                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(16P11.2) MUTATED       36     10      8
  AMP PEAK 34(16P11.2) WILD-TYPE    122     76    158
D34V4, multiclass
        clus
vv       AMP PEAK 34(16P11.2) MUTATED AMP PEAK 34(16P11.2) WILD-TYPE
  CLUS_1                           36                            122
  CLUS_2                           10                             76
  CLUS_3                            8                            158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 34(16P11.2) MUTATED        6      6      1      0      2      5
  AMP PEAK 34(16P11.2) WILD-TYPE     35     31     38     12     39     19
D34V5, multiclass
        clus
vv       AMP PEAK 34(16P11.2) MUTATED AMP PEAK 34(16P11.2) WILD-TYPE
  CLUS_1                            6                             35
  CLUS_2                            6                             31
  CLUS_3                            1                             38
  CLUS_4                            0                             12
  CLUS_5                            2                             39
  CLUS_6                            5                             19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 34(16P11.2) MUTATED       11      6      1      2
  AMP PEAK 34(16P11.2) WILD-TYPE     56     61     42     15
D34V6, multiclass
        clus
vv       AMP PEAK 34(16P11.2) MUTATED AMP PEAK 34(16P11.2) WILD-TYPE
  CLUS_1                           11                             56
  CLUS_2                            6                             61
  CLUS_3                            1                             42
  CLUS_4                            2                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(16P11.2) MUTATED       54      6      3
  AMP PEAK 34(16P11.2) WILD-TYPE    170    144    142
D34V7, multiclass
        clus
vv       AMP PEAK 34(16P11.2) MUTATED AMP PEAK 34(16P11.2) WILD-TYPE
  CLUS_1                           54                            170
  CLUS_2                            6                            144
  CLUS_3                            3                            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(16P11.2) MUTATED       46     13      4
  AMP PEAK 34(16P11.2) WILD-TYPE    117    200    139
D34V8, multiclass
        clus
vv       AMP PEAK 34(16P11.2) MUTATED AMP PEAK 34(16P11.2) WILD-TYPE
  CLUS_1                           46                            117
  CLUS_2                           13                            200
  CLUS_3                            4                            139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(16P11.2) MUTATED        4     51      5
  AMP PEAK 34(16P11.2) WILD-TYPE    137    168    150
D34V9, multiclass
        clus
vv       AMP PEAK 34(16P11.2) MUTATED AMP PEAK 34(16P11.2) WILD-TYPE
  CLUS_1                            4                            137
  CLUS_2                           51                            168
  CLUS_3                            5                            150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 34(16P11.2) MUTATED        4     43      4      9
  AMP PEAK 34(16P11.2) WILD-TYPE     51    119    112    173
D34V10, multiclass
        clus
vv       AMP PEAK 34(16P11.2) MUTATED AMP PEAK 34(16P11.2) WILD-TYPE
  CLUS_1                            4                             51
  CLUS_2                           43                            119
  CLUS_3                            4                            112
  CLUS_4                            9                            173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(16P11.2) MUTATED        6     31     13
  AMP PEAK 34(16P11.2) WILD-TYPE    115    146     81
D34V11, multiclass
        clus
vv       AMP PEAK 34(16P11.2) MUTATED AMP PEAK 34(16P11.2) WILD-TYPE
  CLUS_1                            6                            115
  CLUS_2                           31                            146
  CLUS_3                           13                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 34(16P11.2) MUTATED       28      7     15
  AMP PEAK 34(16P11.2) WILD-TYPE    143    101     98
D34V12, multiclass
        clus
vv       AMP PEAK 34(16P11.2) MUTATED AMP PEAK 34(16P11.2) WILD-TYPE
  CLUS_1                           28                            143
  CLUS_2                            7                            101
  CLUS_3                           15                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = AMP PEAK 35(17Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 35(17Q11.2) MUTATED        1      4      0      0
  AMP PEAK 35(17Q11.2) WILD-TYPE     13     13     12     10
D35V1, multiclass
        clus
vv       AMP PEAK 35(17Q11.2) MUTATED AMP PEAK 35(17Q11.2) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            4                             13
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 35(17Q11.2) MUTATED        2      3      0      0      0
  AMP PEAK 35(17Q11.2) WILD-TYPE     12      6      7      7     16
D35V2, multiclass
        clus
vv       AMP PEAK 35(17Q11.2) MUTATED AMP PEAK 35(17Q11.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            3                              6
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 35(17Q11.2) MUTATED        4      1     60      1      1
  AMP PEAK 35(17Q11.2) WILD-TYPE    301     47     94     11      4
D35V3, multiclass
        clus
vv       AMP PEAK 35(17Q11.2) MUTATED AMP PEAK 35(17Q11.2) WILD-TYPE
  CLUS_1                            4                            301
  CLUS_2                            1                             47
  CLUS_3                           60                             94
  CLUS_4                            1                             11
  CLUS_5                            1                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(17Q11.2) MUTATED       50      6      3
  AMP PEAK 35(17Q11.2) WILD-TYPE    108     80    163
D35V4, multiclass
        clus
vv       AMP PEAK 35(17Q11.2) MUTATED AMP PEAK 35(17Q11.2) WILD-TYPE
  CLUS_1                           50                            108
  CLUS_2                            6                             80
  CLUS_3                            3                            163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 35(17Q11.2) MUTATED        5      6      0      1      0      1
  AMP PEAK 35(17Q11.2) WILD-TYPE     36     31     39     11     41     23
D35V5, multiclass
        clus
vv       AMP PEAK 35(17Q11.2) MUTATED AMP PEAK 35(17Q11.2) WILD-TYPE
  CLUS_1                            5                             36
  CLUS_2                            6                             31
  CLUS_3                            0                             39
  CLUS_4                            1                             11
  CLUS_5                            0                             41
  CLUS_6                            1                             23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 35(17Q11.2) MUTATED        9      2      1      1
  AMP PEAK 35(17Q11.2) WILD-TYPE     58     65     42     16
D35V6, multiclass
        clus
vv       AMP PEAK 35(17Q11.2) MUTATED AMP PEAK 35(17Q11.2) WILD-TYPE
  CLUS_1                            9                             58
  CLUS_2                            2                             65
  CLUS_3                            1                             42
  CLUS_4                            1                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(17Q11.2) MUTATED       59      3      4
  AMP PEAK 35(17Q11.2) WILD-TYPE    165    147    141
D35V7, multiclass
        clus
vv       AMP PEAK 35(17Q11.2) MUTATED AMP PEAK 35(17Q11.2) WILD-TYPE
  CLUS_1                           59                            165
  CLUS_2                            3                            147
  CLUS_3                            4                            141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(17Q11.2) MUTATED       55      8      3
  AMP PEAK 35(17Q11.2) WILD-TYPE    108    205    140
D35V8, multiclass
        clus
vv       AMP PEAK 35(17Q11.2) MUTATED AMP PEAK 35(17Q11.2) WILD-TYPE
  CLUS_1                           55                            108
  CLUS_2                            8                            205
  CLUS_3                            3                            140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(17Q11.2) MUTATED        7     55      2
  AMP PEAK 35(17Q11.2) WILD-TYPE    134    164    153
D35V9, multiclass
        clus
vv       AMP PEAK 35(17Q11.2) MUTATED AMP PEAK 35(17Q11.2) WILD-TYPE
  CLUS_1                            7                            134
  CLUS_2                           55                            164
  CLUS_3                            2                            153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 35(17Q11.2) MUTATED        1     49      3     11
  AMP PEAK 35(17Q11.2) WILD-TYPE     54    113    113    171
D35V10, multiclass
        clus
vv       AMP PEAK 35(17Q11.2) MUTATED AMP PEAK 35(17Q11.2) WILD-TYPE
  CLUS_1                            1                             54
  CLUS_2                           49                            113
  CLUS_3                            3                            113
  CLUS_4                           11                            171
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(17Q11.2) MUTATED        4     40     12
  AMP PEAK 35(17Q11.2) WILD-TYPE    117    137     82
D35V11, multiclass
        clus
vv       AMP PEAK 35(17Q11.2) MUTATED AMP PEAK 35(17Q11.2) WILD-TYPE
  CLUS_1                            4                            117
  CLUS_2                           40                            137
  CLUS_3                           12                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 35(17Q11.2) MUTATED       34      4     18
  AMP PEAK 35(17Q11.2) WILD-TYPE    137    104     95
D35V12, multiclass
        clus
vv       AMP PEAK 35(17Q11.2) MUTATED AMP PEAK 35(17Q11.2) WILD-TYPE
  CLUS_1                           34                            137
  CLUS_2                            4                            104
  CLUS_3                           18                             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = AMP PEAK 36(17Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 36(17Q12) MUTATED        0      4      1      0
  AMP PEAK 36(17Q12) WILD-TYPE     14     13     11     10
D36V1, multiclass
        clus
vv       AMP PEAK 36(17Q12) MUTATED AMP PEAK 36(17Q12) WILD-TYPE
  CLUS_1                          0                           14
  CLUS_2                          4                           13
  CLUS_3                          1                           11
  CLUS_4                          0                           10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 36(17Q12) MUTATED        0      4      1      0      0
  AMP PEAK 36(17Q12) WILD-TYPE     14      5      6      7     16
D36V2, multiclass
        clus
vv       AMP PEAK 36(17Q12) MUTATED AMP PEAK 36(17Q12) WILD-TYPE
  CLUS_1                          0                           14
  CLUS_2                          4                            5
  CLUS_3                          1                            6
  CLUS_4                          0                            7
  CLUS_5                          0                           16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 36(17Q12) MUTATED        6      2     61      1      1
  AMP PEAK 36(17Q12) WILD-TYPE    299     46     93     11      4
D36V3, multiclass
        clus
vv       AMP PEAK 36(17Q12) MUTATED AMP PEAK 36(17Q12) WILD-TYPE
  CLUS_1                          6                          299
  CLUS_2                          2                           46
  CLUS_3                         61                           93
  CLUS_4                          1                           11
  CLUS_5                          1                            4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(17Q12) MUTATED       49      8      2
  AMP PEAK 36(17Q12) WILD-TYPE    109     78    164
D36V4, multiclass
        clus
vv       AMP PEAK 36(17Q12) MUTATED AMP PEAK 36(17Q12) WILD-TYPE
  CLUS_1                         49                          109
  CLUS_2                          8                           78
  CLUS_3                          2                          164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 36(17Q12) MUTATED        4      5      1      1      0      6
  AMP PEAK 36(17Q12) WILD-TYPE     37     32     38     11     41     18
D36V5, multiclass
        clus
vv       AMP PEAK 36(17Q12) MUTATED AMP PEAK 36(17Q12) WILD-TYPE
  CLUS_1                          4                           37
  CLUS_2                          5                           32
  CLUS_3                          1                           38
  CLUS_4                          1                           11
  CLUS_5                          0                           41
  CLUS_6                          6                           18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 36(17Q12) MUTATED        8      3      2      4
  AMP PEAK 36(17Q12) WILD-TYPE     59     64     41     13
D36V6, multiclass
        clus
vv       AMP PEAK 36(17Q12) MUTATED AMP PEAK 36(17Q12) WILD-TYPE
  CLUS_1                          8                           59
  CLUS_2                          3                           64
  CLUS_3                          2                           41
  CLUS_4                          4                           13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(17Q12) MUTATED       66      2      3
  AMP PEAK 36(17Q12) WILD-TYPE    158    148    142
D36V7, multiclass
        clus
vv       AMP PEAK 36(17Q12) MUTATED AMP PEAK 36(17Q12) WILD-TYPE
  CLUS_1                         66                          158
  CLUS_2                          2                          148
  CLUS_3                          3                          142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(17Q12) MUTATED       62      7      2
  AMP PEAK 36(17Q12) WILD-TYPE    101    206    141
D36V8, multiclass
        clus
vv       AMP PEAK 36(17Q12) MUTATED AMP PEAK 36(17Q12) WILD-TYPE
  CLUS_1                         62                          101
  CLUS_2                          7                          206
  CLUS_3                          2                          141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(17Q12) MUTATED        4     62      3
  AMP PEAK 36(17Q12) WILD-TYPE    137    157    152
D36V9, multiclass
        clus
vv       AMP PEAK 36(17Q12) MUTATED AMP PEAK 36(17Q12) WILD-TYPE
  CLUS_1                          4                          137
  CLUS_2                         62                          157
  CLUS_3                          3                          152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 36(17Q12) MUTATED        2     58      3      6
  AMP PEAK 36(17Q12) WILD-TYPE     53    104    113    176
D36V10, multiclass
        clus
vv       AMP PEAK 36(17Q12) MUTATED AMP PEAK 36(17Q12) WILD-TYPE
  CLUS_1                          2                           53
  CLUS_2                         58                          104
  CLUS_3                          3                          113
  CLUS_4                          6                          176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(17Q12) MUTATED        3     36     18
  AMP PEAK 36(17Q12) WILD-TYPE    118    141     76
D36V11, multiclass
        clus
vv       AMP PEAK 36(17Q12) MUTATED AMP PEAK 36(17Q12) WILD-TYPE
  CLUS_1                          3                          118
  CLUS_2                         36                          141
  CLUS_3                         18                           76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 36(17Q12) MUTATED       34      2     21
  AMP PEAK 36(17Q12) WILD-TYPE    137    106     92
D36V12, multiclass
        clus
vv       AMP PEAK 36(17Q12) MUTATED AMP PEAK 36(17Q12) WILD-TYPE
  CLUS_1                         34                          137
  CLUS_2                          2                          106
  CLUS_3                         21                           92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = AMP PEAK 37(17Q25.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 37(17Q25.1) MUTATED        0     10      1      0
  AMP PEAK 37(17Q25.1) WILD-TYPE     14      7     11     10
D37V1, multiclass
        clus
vv       AMP PEAK 37(17Q25.1) MUTATED AMP PEAK 37(17Q25.1) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                           10                              7
  CLUS_3                            1                             11
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 37(17Q25.1) MUTATED        2      8      1      0      0
  AMP PEAK 37(17Q25.1) WILD-TYPE     12      1      6      7     16
D37V2, multiclass
        clus
vv       AMP PEAK 37(17Q25.1) MUTATED AMP PEAK 37(17Q25.1) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            8                              1
  CLUS_3                            1                              6
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 37(17Q25.1) MUTATED        5      6     87      1      1
  AMP PEAK 37(17Q25.1) WILD-TYPE    300     42     67     11      4
D37V3, multiclass
        clus
vv       AMP PEAK 37(17Q25.1) MUTATED AMP PEAK 37(17Q25.1) WILD-TYPE
  CLUS_1                            5                            300
  CLUS_2                            6                             42
  CLUS_3                           87                             67
  CLUS_4                            1                             11
  CLUS_5                            1                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(17Q25.1) MUTATED       59     15      6
  AMP PEAK 37(17Q25.1) WILD-TYPE     99     71    160
D37V4, multiclass
        clus
vv       AMP PEAK 37(17Q25.1) MUTATED AMP PEAK 37(17Q25.1) WILD-TYPE
  CLUS_1                           59                             99
  CLUS_2                           15                             71
  CLUS_3                            6                            160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 37(17Q25.1) MUTATED        6      9      2      1      1      7
  AMP PEAK 37(17Q25.1) WILD-TYPE     35     28     37     11     40     17
D37V5, multiclass
        clus
vv       AMP PEAK 37(17Q25.1) MUTATED AMP PEAK 37(17Q25.1) WILD-TYPE
  CLUS_1                            6                             35
  CLUS_2                            9                             28
  CLUS_3                            2                             37
  CLUS_4                            1                             11
  CLUS_5                            1                             40
  CLUS_6                            7                             17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 37(17Q25.1) MUTATED       12      8      2      4
  AMP PEAK 37(17Q25.1) WILD-TYPE     55     59     41     13
D37V6, multiclass
        clus
vv       AMP PEAK 37(17Q25.1) MUTATED AMP PEAK 37(17Q25.1) WILD-TYPE
  CLUS_1                           12                             55
  CLUS_2                            8                             59
  CLUS_3                            2                             41
  CLUS_4                            4                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(17Q25.1) MUTATED       85      6      8
  AMP PEAK 37(17Q25.1) WILD-TYPE    139    144    137
D37V7, multiclass
        clus
vv       AMP PEAK 37(17Q25.1) MUTATED AMP PEAK 37(17Q25.1) WILD-TYPE
  CLUS_1                           85                            139
  CLUS_2                            6                            144
  CLUS_3                            8                            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(17Q25.1) MUTATED       79     12      8
  AMP PEAK 37(17Q25.1) WILD-TYPE     84    201    135
D37V8, multiclass
        clus
vv       AMP PEAK 37(17Q25.1) MUTATED AMP PEAK 37(17Q25.1) WILD-TYPE
  CLUS_1                           79                             84
  CLUS_2                           12                            201
  CLUS_3                            8                            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(17Q25.1) MUTATED        8     80      8
  AMP PEAK 37(17Q25.1) WILD-TYPE    133    139    147
D37V9, multiclass
        clus
vv       AMP PEAK 37(17Q25.1) MUTATED AMP PEAK 37(17Q25.1) WILD-TYPE
  CLUS_1                            8                            133
  CLUS_2                           80                            139
  CLUS_3                            8                            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 37(17Q25.1) MUTATED        3     69      5     19
  AMP PEAK 37(17Q25.1) WILD-TYPE     52     93    111    163
D37V10, multiclass
        clus
vv       AMP PEAK 37(17Q25.1) MUTATED AMP PEAK 37(17Q25.1) WILD-TYPE
  CLUS_1                            3                             52
  CLUS_2                           69                             93
  CLUS_3                            5                            111
  CLUS_4                           19                            163
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(17Q25.1) MUTATED        9     46     21
  AMP PEAK 37(17Q25.1) WILD-TYPE    112    131     73
D37V11, multiclass
        clus
vv       AMP PEAK 37(17Q25.1) MUTATED AMP PEAK 37(17Q25.1) WILD-TYPE
  CLUS_1                            9                            112
  CLUS_2                           46                            131
  CLUS_3                           21                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 37(17Q25.1) MUTATED       40      8     28
  AMP PEAK 37(17Q25.1) WILD-TYPE    131    100     85
D37V12, multiclass
        clus
vv       AMP PEAK 37(17Q25.1) MUTATED AMP PEAK 37(17Q25.1) WILD-TYPE
  CLUS_1                           40                            131
  CLUS_2                            8                            100
  CLUS_3                           28                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = AMP PEAK 38(18P11.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 38(18P11.31) MUTATED        1      5      1      0
  AMP PEAK 38(18P11.31) WILD-TYPE     13     12     11     10
D38V1, multiclass
        clus
vv       AMP PEAK 38(18P11.31) MUTATED AMP PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                             1                              13
  CLUS_2                             5                              12
  CLUS_3                             1                              11
  CLUS_4                             0                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 38(18P11.31) MUTATED        2      4      0      0      1
  AMP PEAK 38(18P11.31) WILD-TYPE     12      5      7      7     15
D38V2, multiclass
        clus
vv       AMP PEAK 38(18P11.31) MUTATED AMP PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                             2                              12
  CLUS_2                             4                               5
  CLUS_3                             0                               7
  CLUS_4                             0                               7
  CLUS_5                             1                              15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 38(18P11.31) MUTATED        5      6     79      1      0
  AMP PEAK 38(18P11.31) WILD-TYPE    300     42     75     11      5
D38V3, multiclass
        clus
vv       AMP PEAK 38(18P11.31) MUTATED AMP PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                             5                             300
  CLUS_2                             6                              42
  CLUS_3                            79                              75
  CLUS_4                             1                              11
  CLUS_5                             0                               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(18P11.31) MUTATED       57     16      7
  AMP PEAK 38(18P11.31) WILD-TYPE    101     70    159
D38V4, multiclass
        clus
vv       AMP PEAK 38(18P11.31) MUTATED AMP PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                            57                             101
  CLUS_2                            16                              70
  CLUS_3                             7                             159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 38(18P11.31) MUTATED        7      4      0      0      1      5
  AMP PEAK 38(18P11.31) WILD-TYPE     34     33     39     12     40     19
D38V5, multiclass
        clus
vv       AMP PEAK 38(18P11.31) MUTATED AMP PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                             7                              34
  CLUS_2                             4                              33
  CLUS_3                             0                              39
  CLUS_4                             0                              12
  CLUS_5                             1                              40
  CLUS_6                             5                              19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 38(18P11.31) MUTATED       10      4      1      2
  AMP PEAK 38(18P11.31) WILD-TYPE     57     63     42     15
D38V6, multiclass
        clus
vv       AMP PEAK 38(18P11.31) MUTATED AMP PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                            10                              57
  CLUS_2                             4                              63
  CLUS_3                             1                              42
  CLUS_4                             2                              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(18P11.31) MUTATED       80      3      8
  AMP PEAK 38(18P11.31) WILD-TYPE    144    147    137
D38V7, multiclass
        clus
vv       AMP PEAK 38(18P11.31) MUTATED AMP PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                            80                             144
  CLUS_2                             3                             147
  CLUS_3                             8                             137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(18P11.31) MUTATED       73     10      8
  AMP PEAK 38(18P11.31) WILD-TYPE     90    203    135
D38V8, multiclass
        clus
vv       AMP PEAK 38(18P11.31) MUTATED AMP PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                            73                              90
  CLUS_2                            10                             203
  CLUS_3                             8                             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(18P11.31) MUTATED        6     76      8
  AMP PEAK 38(18P11.31) WILD-TYPE    135    143    147
D38V9, multiclass
        clus
vv       AMP PEAK 38(18P11.31) MUTATED AMP PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                             6                             135
  CLUS_2                            76                             143
  CLUS_3                             8                             147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 38(18P11.31) MUTATED        2     72      7      9
  AMP PEAK 38(18P11.31) WILD-TYPE     53     90    109    173
D38V10, multiclass
        clus
vv       AMP PEAK 38(18P11.31) MUTATED AMP PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                             2                              53
  CLUS_2                            72                              90
  CLUS_3                             7                             109
  CLUS_4                             9                             173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(18P11.31) MUTATED        7     48     23
  AMP PEAK 38(18P11.31) WILD-TYPE    114    129     71
D38V11, multiclass
        clus
vv       AMP PEAK 38(18P11.31) MUTATED AMP PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                             7                             114
  CLUS_2                            48                             129
  CLUS_3                            23                              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 38(18P11.31) MUTATED       44      8     26
  AMP PEAK 38(18P11.31) WILD-TYPE    127    100     87
D38V12, multiclass
        clus
vv       AMP PEAK 38(18P11.31) MUTATED AMP PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                            44                             127
  CLUS_2                             8                             100
  CLUS_3                            26                              87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = AMP PEAK 39(18Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 39(18Q11.2) MUTATED        0      4      1      0
  AMP PEAK 39(18Q11.2) WILD-TYPE     14     13     11     10
D39V1, multiclass
        clus
vv       AMP PEAK 39(18Q11.2) MUTATED AMP PEAK 39(18Q11.2) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            4                             13
  CLUS_3                            1                             11
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 39(18Q11.2) MUTATED        1      3      0      0      1
  AMP PEAK 39(18Q11.2) WILD-TYPE     13      6      7      7     15
D39V2, multiclass
        clus
vv       AMP PEAK 39(18Q11.2) MUTATED AMP PEAK 39(18Q11.2) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                              6
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            1                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 39(18Q11.2) MUTATED        3      3     60      1      0
  AMP PEAK 39(18Q11.2) WILD-TYPE    302     45     94     11      5
D39V3, multiclass
        clus
vv       AMP PEAK 39(18Q11.2) MUTATED AMP PEAK 39(18Q11.2) WILD-TYPE
  CLUS_1                            3                            302
  CLUS_2                            3                             45
  CLUS_3                           60                             94
  CLUS_4                            1                             11
  CLUS_5                            0                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(18Q11.2) MUTATED       44     12      3
  AMP PEAK 39(18Q11.2) WILD-TYPE    114     74    163
D39V4, multiclass
        clus
vv       AMP PEAK 39(18Q11.2) MUTATED AMP PEAK 39(18Q11.2) WILD-TYPE
  CLUS_1                           44                            114
  CLUS_2                           12                             74
  CLUS_3                            3                            163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 39(18Q11.2) MUTATED        6      3      1      0      1      3
  AMP PEAK 39(18Q11.2) WILD-TYPE     35     34     38     12     40     21
D39V5, multiclass
        clus
vv       AMP PEAK 39(18Q11.2) MUTATED AMP PEAK 39(18Q11.2) WILD-TYPE
  CLUS_1                            6                             35
  CLUS_2                            3                             34
  CLUS_3                            1                             38
  CLUS_4                            0                             12
  CLUS_5                            1                             40
  CLUS_6                            3                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 39(18Q11.2) MUTATED        9      3      0      2
  AMP PEAK 39(18Q11.2) WILD-TYPE     58     64     43     15
D39V6, multiclass
        clus
vv       AMP PEAK 39(18Q11.2) MUTATED AMP PEAK 39(18Q11.2) WILD-TYPE
  CLUS_1                            9                             58
  CLUS_2                            3                             64
  CLUS_3                            0                             43
  CLUS_4                            2                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(18Q11.2) MUTATED       61      3      3
  AMP PEAK 39(18Q11.2) WILD-TYPE    163    147    142
D39V7, multiclass
        clus
vv       AMP PEAK 39(18Q11.2) MUTATED AMP PEAK 39(18Q11.2) WILD-TYPE
  CLUS_1                           61                            163
  CLUS_2                            3                            147
  CLUS_3                            3                            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(18Q11.2) MUTATED       56      8      3
  AMP PEAK 39(18Q11.2) WILD-TYPE    107    205    140
D39V8, multiclass
        clus
vv       AMP PEAK 39(18Q11.2) MUTATED AMP PEAK 39(18Q11.2) WILD-TYPE
  CLUS_1                           56                            107
  CLUS_2                            8                            205
  CLUS_3                            3                            140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(18Q11.2) MUTATED        6     57      3
  AMP PEAK 39(18Q11.2) WILD-TYPE    135    162    152
D39V9, multiclass
        clus
vv       AMP PEAK 39(18Q11.2) MUTATED AMP PEAK 39(18Q11.2) WILD-TYPE
  CLUS_1                            6                            135
  CLUS_2                           57                            162
  CLUS_3                            3                            152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 39(18Q11.2) MUTATED        2     54      1      9
  AMP PEAK 39(18Q11.2) WILD-TYPE     53    108    115    173
D39V10, multiclass
        clus
vv       AMP PEAK 39(18Q11.2) MUTATED AMP PEAK 39(18Q11.2) WILD-TYPE
  CLUS_1                            2                             53
  CLUS_2                           54                            108
  CLUS_3                            1                            115
  CLUS_4                            9                            173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(18Q11.2) MUTATED        1     40     15
  AMP PEAK 39(18Q11.2) WILD-TYPE    120    137     79
D39V11, multiclass
        clus
vv       AMP PEAK 39(18Q11.2) MUTATED AMP PEAK 39(18Q11.2) WILD-TYPE
  CLUS_1                            1                            120
  CLUS_2                           40                            137
  CLUS_3                           15                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 39(18Q11.2) MUTATED       36      1     19
  AMP PEAK 39(18Q11.2) WILD-TYPE    135    107     94
D39V12, multiclass
        clus
vv       AMP PEAK 39(18Q11.2) MUTATED AMP PEAK 39(18Q11.2) WILD-TYPE
  CLUS_1                           36                            135
  CLUS_2                            1                            107
  CLUS_3                           19                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = AMP PEAK 40(19P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 40(19P13.2) MUTATED        0      9      0      0
  AMP PEAK 40(19P13.2) WILD-TYPE     14      8     12     10
D40V1, multiclass
        clus
vv       AMP PEAK 40(19P13.2) MUTATED AMP PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            9                              8
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 40(19P13.2) MUTATED        2      7      0      0      0
  AMP PEAK 40(19P13.2) WILD-TYPE     12      2      7      7     16
D40V2, multiclass
        clus
vv       AMP PEAK 40(19P13.2) MUTATED AMP PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            7                              2
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 40(19P13.2) MUTATED        0      2     84      2      0
  AMP PEAK 40(19P13.2) WILD-TYPE    305     46     70     10      5
D40V3, multiclass
        clus
vv       AMP PEAK 40(19P13.2) MUTATED AMP PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                            0                            305
  CLUS_2                            2                             46
  CLUS_3                           84                             70
  CLUS_4                            2                             10
  CLUS_5                            0                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 40(19P13.2) MUTATED       54     16      7
  AMP PEAK 40(19P13.2) WILD-TYPE    104     70    159
D40V4, multiclass
        clus
vv       AMP PEAK 40(19P13.2) MUTATED AMP PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                           54                            104
  CLUS_2                           16                             70
  CLUS_3                            7                            159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 40(19P13.2) MUTATED        6      6      2      0      1      3
  AMP PEAK 40(19P13.2) WILD-TYPE     35     31     37     12     40     21
D40V5, multiclass
        clus
vv       AMP PEAK 40(19P13.2) MUTATED AMP PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                            6                             35
  CLUS_2                            6                             31
  CLUS_3                            2                             37
  CLUS_4                            0                             12
  CLUS_5                            1                             40
  CLUS_6                            3                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 40(19P13.2) MUTATED       12      3      0      3
  AMP PEAK 40(19P13.2) WILD-TYPE     55     64     43     14
D40V6, multiclass
        clus
vv       AMP PEAK 40(19P13.2) MUTATED AMP PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                           12                             55
  CLUS_2                            3                             64
  CLUS_3                            0                             43
  CLUS_4                            3                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 40(19P13.2) MUTATED       78      2      7
  AMP PEAK 40(19P13.2) WILD-TYPE    146    148    138
D40V7, multiclass
        clus
vv       AMP PEAK 40(19P13.2) MUTATED AMP PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                           78                            146
  CLUS_2                            2                            148
  CLUS_3                            7                            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 40(19P13.2) MUTATED       69     11      7
  AMP PEAK 40(19P13.2) WILD-TYPE     94    202    136
D40V8, multiclass
        clus
vv       AMP PEAK 40(19P13.2) MUTATED AMP PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                           69                             94
  CLUS_2                           11                            202
  CLUS_3                            7                            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 40(19P13.2) MUTATED        4     73      8
  AMP PEAK 40(19P13.2) WILD-TYPE    137    146    147
D40V9, multiclass
        clus
vv       AMP PEAK 40(19P13.2) MUTATED AMP PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                            4                            137
  CLUS_2                           73                            146
  CLUS_3                            8                            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 40(19P13.2) MUTATED        1     62      8     14
  AMP PEAK 40(19P13.2) WILD-TYPE     54    100    108    168
D40V10, multiclass
        clus
vv       AMP PEAK 40(19P13.2) MUTATED AMP PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                            1                             54
  CLUS_2                           62                            100
  CLUS_3                            8                            108
  CLUS_4                           14                            168
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 40(19P13.2) MUTATED       10     45     18
  AMP PEAK 40(19P13.2) WILD-TYPE    111    132     76
D40V11, multiclass
        clus
vv       AMP PEAK 40(19P13.2) MUTATED AMP PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                           10                            111
  CLUS_2                           45                            132
  CLUS_3                           18                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 40(19P13.2) MUTATED       42     12     19
  AMP PEAK 40(19P13.2) WILD-TYPE    129     96     94
D40V12, multiclass
        clus
vv       AMP PEAK 40(19P13.2) MUTATED AMP PEAK 40(19P13.2) WILD-TYPE
  CLUS_1                           42                            129
  CLUS_2                           12                             96
  CLUS_3                           19                             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = AMP PEAK 41(19P13.12) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 41(19P13.12) MUTATED        1      7      0      0
  AMP PEAK 41(19P13.12) WILD-TYPE     13     10     12     10
D41V1, multiclass
        clus
vv       AMP PEAK 41(19P13.12) MUTATED AMP PEAK 41(19P13.12) WILD-TYPE
  CLUS_1                             1                              13
  CLUS_2                             7                              10
  CLUS_3                             0                              12
  CLUS_4                             0                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 41(19P13.12) MUTATED        2      6      0      0      0
  AMP PEAK 41(19P13.12) WILD-TYPE     12      3      7      7     16
D41V2, multiclass
        clus
vv       AMP PEAK 41(19P13.12) MUTATED AMP PEAK 41(19P13.12) WILD-TYPE
  CLUS_1                             2                              12
  CLUS_2                             6                               3
  CLUS_3                             0                               7
  CLUS_4                             0                               7
  CLUS_5                             0                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 41(19P13.12) MUTATED        0      3     85      2      1
  AMP PEAK 41(19P13.12) WILD-TYPE    305     45     69     10      4
D41V3, multiclass
        clus
vv       AMP PEAK 41(19P13.12) MUTATED AMP PEAK 41(19P13.12) WILD-TYPE
  CLUS_1                             0                             305
  CLUS_2                             3                              45
  CLUS_3                            85                              69
  CLUS_4                             2                              10
  CLUS_5                             1                               4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 41(19P13.12) MUTATED       55     15      7
  AMP PEAK 41(19P13.12) WILD-TYPE    103     71    159
D41V4, multiclass
        clus
vv       AMP PEAK 41(19P13.12) MUTATED AMP PEAK 41(19P13.12) WILD-TYPE
  CLUS_1                            55                             103
  CLUS_2                            15                              71
  CLUS_3                             7                             159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 41(19P13.12) MUTATED        4      9      3      0      1      4
  AMP PEAK 41(19P13.12) WILD-TYPE     37     28     36     12     40     20
D41V5, multiclass
        clus
vv       AMP PEAK 41(19P13.12) MUTATED AMP PEAK 41(19P13.12) WILD-TYPE
  CLUS_1                             4                              37
  CLUS_2                             9                              28
  CLUS_3                             3                              36
  CLUS_4                             0                              12
  CLUS_5                             1                              40
  CLUS_6                             4                              20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 41(19P13.12) MUTATED       12      6      0      3
  AMP PEAK 41(19P13.12) WILD-TYPE     55     61     43     14
D41V6, multiclass
        clus
vv       AMP PEAK 41(19P13.12) MUTATED AMP PEAK 41(19P13.12) WILD-TYPE
  CLUS_1                            12                              55
  CLUS_2                             6                              61
  CLUS_3                             0                              43
  CLUS_4                             3                              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 41(19P13.12) MUTATED       81      4      5
  AMP PEAK 41(19P13.12) WILD-TYPE    143    146    140
D41V7, multiclass
        clus
vv       AMP PEAK 41(19P13.12) MUTATED AMP PEAK 41(19P13.12) WILD-TYPE
  CLUS_1                            81                             143
  CLUS_2                             4                             146
  CLUS_3                             5                             140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 41(19P13.12) MUTATED       72     13      5
  AMP PEAK 41(19P13.12) WILD-TYPE     91    200    138
D41V8, multiclass
        clus
vv       AMP PEAK 41(19P13.12) MUTATED AMP PEAK 41(19P13.12) WILD-TYPE
  CLUS_1                            72                              91
  CLUS_2                            13                             200
  CLUS_3                             5                             138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 41(19P13.12) MUTATED        7     75      7
  AMP PEAK 41(19P13.12) WILD-TYPE    134    144    148
D41V9, multiclass
        clus
vv       AMP PEAK 41(19P13.12) MUTATED AMP PEAK 41(19P13.12) WILD-TYPE
  CLUS_1                             7                             134
  CLUS_2                            75                             144
  CLUS_3                             7                             148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 41(19P13.12) MUTATED        2     65      6     16
  AMP PEAK 41(19P13.12) WILD-TYPE     53     97    110    166
D41V10, multiclass
        clus
vv       AMP PEAK 41(19P13.12) MUTATED AMP PEAK 41(19P13.12) WILD-TYPE
  CLUS_1                             2                              53
  CLUS_2                            65                              97
  CLUS_3                             6                             110
  CLUS_4                            16                             166
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 41(19P13.12) MUTATED        8     46     20
  AMP PEAK 41(19P13.12) WILD-TYPE    113    131     74
D41V11, multiclass
        clus
vv       AMP PEAK 41(19P13.12) MUTATED AMP PEAK 41(19P13.12) WILD-TYPE
  CLUS_1                             8                             113
  CLUS_2                            46                             131
  CLUS_3                            20                              74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 41(19P13.12) MUTATED       44     10     20
  AMP PEAK 41(19P13.12) WILD-TYPE    127     98     93
D41V12, multiclass
        clus
vv       AMP PEAK 41(19P13.12) MUTATED AMP PEAK 41(19P13.12) WILD-TYPE
  CLUS_1                            44                             127
  CLUS_2                            10                              98
  CLUS_3                            20                              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = AMP PEAK 42(19Q12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 42(19Q12) MUTATED        1      8      1      0
  AMP PEAK 42(19Q12) WILD-TYPE     13      9     11     10
D42V1, multiclass
        clus
vv       AMP PEAK 42(19Q12) MUTATED AMP PEAK 42(19Q12) WILD-TYPE
  CLUS_1                          1                           13
  CLUS_2                          8                            9
  CLUS_3                          1                           11
  CLUS_4                          0                           10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 42(19Q12) MUTATED        2      7      1      0      0
  AMP PEAK 42(19Q12) WILD-TYPE     12      2      6      7     16
D42V2, multiclass
        clus
vv       AMP PEAK 42(19Q12) MUTATED AMP PEAK 42(19Q12) WILD-TYPE
  CLUS_1                          2                           12
  CLUS_2                          7                            2
  CLUS_3                          1                            6
  CLUS_4                          0                            7
  CLUS_5                          0                           16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 42(19Q12) MUTATED        3      5    105      2      0
  AMP PEAK 42(19Q12) WILD-TYPE    302     43     49     10      5
D42V3, multiclass
        clus
vv       AMP PEAK 42(19Q12) MUTATED AMP PEAK 42(19Q12) WILD-TYPE
  CLUS_1                          3                          302
  CLUS_2                          5                           43
  CLUS_3                        105                           49
  CLUS_4                          2                           10
  CLUS_5                          0                            5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 42(19Q12) MUTATED       75     18      8
  AMP PEAK 42(19Q12) WILD-TYPE     83     68    158
D42V4, multiclass
        clus
vv       AMP PEAK 42(19Q12) MUTATED AMP PEAK 42(19Q12) WILD-TYPE
  CLUS_1                         75                           83
  CLUS_2                         18                           68
  CLUS_3                          8                          158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 42(19Q12) MUTATED        5      6      1      0      1      7
  AMP PEAK 42(19Q12) WILD-TYPE     36     31     38     12     40     17
D42V5, multiclass
        clus
vv       AMP PEAK 42(19Q12) MUTATED AMP PEAK 42(19Q12) WILD-TYPE
  CLUS_1                          5                           36
  CLUS_2                          6                           31
  CLUS_3                          1                           38
  CLUS_4                          0                           12
  CLUS_5                          1                           40
  CLUS_6                          7                           17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 42(19Q12) MUTATED       12      4      0      4
  AMP PEAK 42(19Q12) WILD-TYPE     55     63     43     13
D42V6, multiclass
        clus
vv       AMP PEAK 42(19Q12) MUTATED AMP PEAK 42(19Q12) WILD-TYPE
  CLUS_1                         12                           55
  CLUS_2                          4                           63
  CLUS_3                          0                           43
  CLUS_4                          4                           13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 42(19Q12) MUTATED      106      2      7
  AMP PEAK 42(19Q12) WILD-TYPE    118    148    138
D42V7, multiclass
        clus
vv       AMP PEAK 42(19Q12) MUTATED AMP PEAK 42(19Q12) WILD-TYPE
  CLUS_1                        106                          118
  CLUS_2                          2                          148
  CLUS_3                          7                          138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 42(19Q12) MUTATED       95     14      6
  AMP PEAK 42(19Q12) WILD-TYPE     68    199    137
D42V8, multiclass
        clus
vv       AMP PEAK 42(19Q12) MUTATED AMP PEAK 42(19Q12) WILD-TYPE
  CLUS_1                         95                           68
  CLUS_2                         14                          199
  CLUS_3                          6                          137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 42(19Q12) MUTATED        6     97      8
  AMP PEAK 42(19Q12) WILD-TYPE    135    122    147
D42V9, multiclass
        clus
vv       AMP PEAK 42(19Q12) MUTATED AMP PEAK 42(19Q12) WILD-TYPE
  CLUS_1                          6                          135
  CLUS_2                         97                          122
  CLUS_3                          8                          147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 42(19Q12) MUTATED        2     88      7     14
  AMP PEAK 42(19Q12) WILD-TYPE     53     74    109    168
D42V10, multiclass
        clus
vv       AMP PEAK 42(19Q12) MUTATED AMP PEAK 42(19Q12) WILD-TYPE
  CLUS_1                          2                           53
  CLUS_2                         88                           74
  CLUS_3                          7                          109
  CLUS_4                         14                          168
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 42(19Q12) MUTATED       10     61     26
  AMP PEAK 42(19Q12) WILD-TYPE    111    116     68
D42V11, multiclass
        clus
vv       AMP PEAK 42(19Q12) MUTATED AMP PEAK 42(19Q12) WILD-TYPE
  CLUS_1                         10                          111
  CLUS_2                         61                          116
  CLUS_3                         26                           68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 42(19Q12) MUTATED       56     12     29
  AMP PEAK 42(19Q12) WILD-TYPE    115     96     84
D42V12, multiclass
        clus
vv       AMP PEAK 42(19Q12) MUTATED AMP PEAK 42(19Q12) WILD-TYPE
  CLUS_1                         56                          115
  CLUS_2                         12                           96
  CLUS_3                         29                           84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = AMP PEAK 43(20P13) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 43(20P13) MUTATED        1      4      0      0
  AMP PEAK 43(20P13) WILD-TYPE     13     13     12     10
D43V1, multiclass
        clus
vv       AMP PEAK 43(20P13) MUTATED AMP PEAK 43(20P13) WILD-TYPE
  CLUS_1                          1                           13
  CLUS_2                          4                           13
  CLUS_3                          0                           12
  CLUS_4                          0                           10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 43(20P13) MUTATED        2      3      0      0      0
  AMP PEAK 43(20P13) WILD-TYPE     12      6      7      7     16
D43V2, multiclass
        clus
vv       AMP PEAK 43(20P13) MUTATED AMP PEAK 43(20P13) WILD-TYPE
  CLUS_1                          2                           12
  CLUS_2                          3                            6
  CLUS_3                          0                            7
  CLUS_4                          0                            7
  CLUS_5                          0                           16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 43(20P13) MUTATED        8     20     82      1      2
  AMP PEAK 43(20P13) WILD-TYPE    297     28     72     11      3
D43V3, multiclass
        clus
vv       AMP PEAK 43(20P13) MUTATED AMP PEAK 43(20P13) WILD-TYPE
  CLUS_1                          8                          297
  CLUS_2                         20                           28
  CLUS_3                         82                           72
  CLUS_4                          1                           11
  CLUS_5                          2                            3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 43(20P13) MUTATED       71     16     16
  AMP PEAK 43(20P13) WILD-TYPE     87     70    150
D43V4, multiclass
        clus
vv       AMP PEAK 43(20P13) MUTATED AMP PEAK 43(20P13) WILD-TYPE
  CLUS_1                         71                           87
  CLUS_2                         16                           70
  CLUS_3                         16                          150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 43(20P13) MUTATED        6      7      4      0      2      6
  AMP PEAK 43(20P13) WILD-TYPE     35     30     35     12     39     18
D43V5, multiclass
        clus
vv       AMP PEAK 43(20P13) MUTATED AMP PEAK 43(20P13) WILD-TYPE
  CLUS_1                          6                           35
  CLUS_2                          7                           30
  CLUS_3                          4                           35
  CLUS_4                          0                           12
  CLUS_5                          2                           39
  CLUS_6                          6                           18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 43(20P13) MUTATED       11      6      4      4
  AMP PEAK 43(20P13) WILD-TYPE     56     61     39     13
D43V6, multiclass
        clus
vv       AMP PEAK 43(20P13) MUTATED AMP PEAK 43(20P13) WILD-TYPE
  CLUS_1                         11                           56
  CLUS_2                          6                           61
  CLUS_3                          4                           39
  CLUS_4                          4                           13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 43(20P13) MUTATED       86     12     14
  AMP PEAK 43(20P13) WILD-TYPE    138    138    131
D43V7, multiclass
        clus
vv       AMP PEAK 43(20P13) MUTATED AMP PEAK 43(20P13) WILD-TYPE
  CLUS_1                         86                          138
  CLUS_2                         12                          138
  CLUS_3                         14                          131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 43(20P13) MUTATED       76     19     17
  AMP PEAK 43(20P13) WILD-TYPE     87    194    126
D43V8, multiclass
        clus
vv       AMP PEAK 43(20P13) MUTATED AMP PEAK 43(20P13) WILD-TYPE
  CLUS_1                         76                           87
  CLUS_2                         19                          194
  CLUS_3                         17                          126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 43(20P13) MUTATED       15     82     15
  AMP PEAK 43(20P13) WILD-TYPE    126    137    140
D43V9, multiclass
        clus
vv       AMP PEAK 43(20P13) MUTATED AMP PEAK 43(20P13) WILD-TYPE
  CLUS_1                         15                          126
  CLUS_2                         82                          137
  CLUS_3                         15                          140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 43(20P13) MUTATED        6     72     13     21
  AMP PEAK 43(20P13) WILD-TYPE     49     90    103    161
D43V10, multiclass
        clus
vv       AMP PEAK 43(20P13) MUTATED AMP PEAK 43(20P13) WILD-TYPE
  CLUS_1                          6                           49
  CLUS_2                         72                           90
  CLUS_3                         13                          103
  CLUS_4                         21                          161
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 43(20P13) MUTATED       16     60     20
  AMP PEAK 43(20P13) WILD-TYPE    105    117     74
D43V11, multiclass
        clus
vv       AMP PEAK 43(20P13) MUTATED AMP PEAK 43(20P13) WILD-TYPE
  CLUS_1                         16                          105
  CLUS_2                         60                          117
  CLUS_3                         20                           74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 43(20P13) MUTATED       59     14     23
  AMP PEAK 43(20P13) WILD-TYPE    112     94     90
D43V12, multiclass
        clus
vv       AMP PEAK 43(20P13) MUTATED AMP PEAK 43(20P13) WILD-TYPE
  CLUS_1                         59                          112
  CLUS_2                         14                           94
  CLUS_3                         23                           90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = AMP PEAK 44(20Q11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 44(20Q11.21) MUTATED        2      8      0      0
  AMP PEAK 44(20Q11.21) WILD-TYPE     12      9     12     10
D44V1, multiclass
        clus
vv       AMP PEAK 44(20Q11.21) MUTATED AMP PEAK 44(20Q11.21) WILD-TYPE
  CLUS_1                             2                              12
  CLUS_2                             8                               9
  CLUS_3                             0                              12
  CLUS_4                             0                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 44(20Q11.21) MUTATED        4      6      0      0      0
  AMP PEAK 44(20Q11.21) WILD-TYPE     10      3      7      7     16
D44V2, multiclass
        clus
vv       AMP PEAK 44(20Q11.21) MUTATED AMP PEAK 44(20Q11.21) WILD-TYPE
  CLUS_1                             4                              10
  CLUS_2                             6                               3
  CLUS_3                             0                               7
  CLUS_4                             0                               7
  CLUS_5                             0                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 44(20Q11.21) MUTATED        7     26    106      1      2
  AMP PEAK 44(20Q11.21) WILD-TYPE    298     22     48     11      3
D44V3, multiclass
        clus
vv       AMP PEAK 44(20Q11.21) MUTATED AMP PEAK 44(20Q11.21) WILD-TYPE
  CLUS_1                             7                             298
  CLUS_2                            26                              22
  CLUS_3                           106                              48
  CLUS_4                             1                              11
  CLUS_5                             2                               3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 44(20Q11.21) MUTATED       83     20     21
  AMP PEAK 44(20Q11.21) WILD-TYPE     75     66    145
D44V4, multiclass
        clus
vv       AMP PEAK 44(20Q11.21) MUTATED AMP PEAK 44(20Q11.21) WILD-TYPE
  CLUS_1                            83                              75
  CLUS_2                            20                              66
  CLUS_3                            21                             145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 44(20Q11.21) MUTATED        7     11      2      0      2      8
  AMP PEAK 44(20Q11.21) WILD-TYPE     34     26     37     12     39     16
D44V5, multiclass
        clus
vv       AMP PEAK 44(20Q11.21) MUTATED AMP PEAK 44(20Q11.21) WILD-TYPE
  CLUS_1                             7                              34
  CLUS_2                            11                              26
  CLUS_3                             2                              37
  CLUS_4                             0                              12
  CLUS_5                             2                              39
  CLUS_6                             8                              16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 44(20Q11.21) MUTATED       14      8      4      4
  AMP PEAK 44(20Q11.21) WILD-TYPE     53     59     39     13
D44V6, multiclass
        clus
vv       AMP PEAK 44(20Q11.21) MUTATED AMP PEAK 44(20Q11.21) WILD-TYPE
  CLUS_1                            14                              53
  CLUS_2                             8                              59
  CLUS_3                             4                              39
  CLUS_4                             4                              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 44(20Q11.21) MUTATED      112     10     19
  AMP PEAK 44(20Q11.21) WILD-TYPE    112    140    126
D44V7, multiclass
        clus
vv       AMP PEAK 44(20Q11.21) MUTATED AMP PEAK 44(20Q11.21) WILD-TYPE
  CLUS_1                           112                             112
  CLUS_2                            10                             140
  CLUS_3                            19                             126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 44(20Q11.21) MUTATED       96     25     20
  AMP PEAK 44(20Q11.21) WILD-TYPE     67    188    123
D44V8, multiclass
        clus
vv       AMP PEAK 44(20Q11.21) MUTATED AMP PEAK 44(20Q11.21) WILD-TYPE
  CLUS_1                            96                              67
  CLUS_2                            25                             188
  CLUS_3                            20                             123
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 44(20Q11.21) MUTATED       14    106     19
  AMP PEAK 44(20Q11.21) WILD-TYPE    127    113    136
D44V9, multiclass
        clus
vv       AMP PEAK 44(20Q11.21) MUTATED AMP PEAK 44(20Q11.21) WILD-TYPE
  CLUS_1                            14                             127
  CLUS_2                           106                             113
  CLUS_3                            19                             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 44(20Q11.21) MUTATED        6     90     17     26
  AMP PEAK 44(20Q11.21) WILD-TYPE     49     72     99    156
D44V10, multiclass
        clus
vv       AMP PEAK 44(20Q11.21) MUTATED AMP PEAK 44(20Q11.21) WILD-TYPE
  CLUS_1                             6                              49
  CLUS_2                            90                              72
  CLUS_3                            17                              99
  CLUS_4                            26                             156
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 44(20Q11.21) MUTATED       22     75     22
  AMP PEAK 44(20Q11.21) WILD-TYPE     99    102     72
D44V11, multiclass
        clus
vv       AMP PEAK 44(20Q11.21) MUTATED AMP PEAK 44(20Q11.21) WILD-TYPE
  CLUS_1                            22                              99
  CLUS_2                            75                             102
  CLUS_3                            22                              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 44(20Q11.21) MUTATED       70     22     27
  AMP PEAK 44(20Q11.21) WILD-TYPE    101     86     86
D44V12, multiclass
        clus
vv       AMP PEAK 44(20Q11.21) MUTATED AMP PEAK 44(20Q11.21) WILD-TYPE
  CLUS_1                            70                             101
  CLUS_2                            22                              86
  CLUS_3                            27                              86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = AMP PEAK 45(20Q13.12) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 45(20Q13.12) MUTATED        1      6      0      0
  AMP PEAK 45(20Q13.12) WILD-TYPE     13     11     12     10
D45V1, multiclass
        clus
vv       AMP PEAK 45(20Q13.12) MUTATED AMP PEAK 45(20Q13.12) WILD-TYPE
  CLUS_1                             1                              13
  CLUS_2                             6                              11
  CLUS_3                             0                              12
  CLUS_4                             0                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 45(20Q13.12) MUTATED        3      4      0      0      0
  AMP PEAK 45(20Q13.12) WILD-TYPE     11      5      7      7     16
D45V2, multiclass
        clus
vv       AMP PEAK 45(20Q13.12) MUTATED AMP PEAK 45(20Q13.12) WILD-TYPE
  CLUS_1                             3                              11
  CLUS_2                             4                               5
  CLUS_3                             0                               7
  CLUS_4                             0                               7
  CLUS_5                             0                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 45(20Q13.12) MUTATED        9     28    105      1      2
  AMP PEAK 45(20Q13.12) WILD-TYPE    296     20     49     11      3
D45V3, multiclass
        clus
vv       AMP PEAK 45(20Q13.12) MUTATED AMP PEAK 45(20Q13.12) WILD-TYPE
  CLUS_1                             9                             296
  CLUS_2                            28                              20
  CLUS_3                           105                              49
  CLUS_4                             1                              11
  CLUS_5                             2                               3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 45(20Q13.12) MUTATED       87     20     24
  AMP PEAK 45(20Q13.12) WILD-TYPE     71     66    142
D45V4, multiclass
        clus
vv       AMP PEAK 45(20Q13.12) MUTATED AMP PEAK 45(20Q13.12) WILD-TYPE
  CLUS_1                            87                              71
  CLUS_2                            20                              66
  CLUS_3                            24                             142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 45(20Q13.12) MUTATED        6     12      2      1      3      7
  AMP PEAK 45(20Q13.12) WILD-TYPE     35     25     37     11     38     17
D45V5, multiclass
        clus
vv       AMP PEAK 45(20Q13.12) MUTATED AMP PEAK 45(20Q13.12) WILD-TYPE
  CLUS_1                             6                              35
  CLUS_2                            12                              25
  CLUS_3                             2                              37
  CLUS_4                             1                              11
  CLUS_5                             3                              38
  CLUS_6                             7                              17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 45(20Q13.12) MUTATED       14      8      5      4
  AMP PEAK 45(20Q13.12) WILD-TYPE     53     59     38     13
D45V6, multiclass
        clus
vv       AMP PEAK 45(20Q13.12) MUTATED AMP PEAK 45(20Q13.12) WILD-TYPE
  CLUS_1                            14                              53
  CLUS_2                             8                              59
  CLUS_3                             5                              38
  CLUS_4                             4                              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 45(20Q13.12) MUTATED      112     12     20
  AMP PEAK 45(20Q13.12) WILD-TYPE    112    138    125
D45V7, multiclass
        clus
vv       AMP PEAK 45(20Q13.12) MUTATED AMP PEAK 45(20Q13.12) WILD-TYPE
  CLUS_1                           112                             112
  CLUS_2                            12                             138
  CLUS_3                            20                             125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 45(20Q13.12) MUTATED       96     27     21
  AMP PEAK 45(20Q13.12) WILD-TYPE     67    186    122
D45V8, multiclass
        clus
vv       AMP PEAK 45(20Q13.12) MUTATED AMP PEAK 45(20Q13.12) WILD-TYPE
  CLUS_1                            96                              67
  CLUS_2                            27                             186
  CLUS_3                            21                             122
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 45(20Q13.12) MUTATED       16    106     22
  AMP PEAK 45(20Q13.12) WILD-TYPE    125    113    133
D45V9, multiclass
        clus
vv       AMP PEAK 45(20Q13.12) MUTATED AMP PEAK 45(20Q13.12) WILD-TYPE
  CLUS_1                            16                             125
  CLUS_2                           106                             113
  CLUS_3                            22                             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 45(20Q13.12) MUTATED        6     90     17     31
  AMP PEAK 45(20Q13.12) WILD-TYPE     49     72     99    151
D45V10, multiclass
        clus
vv       AMP PEAK 45(20Q13.12) MUTATED AMP PEAK 45(20Q13.12) WILD-TYPE
  CLUS_1                             6                              49
  CLUS_2                            90                              72
  CLUS_3                            17                              99
  CLUS_4                            31                             151
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 45(20Q13.12) MUTATED       24     76     25
  AMP PEAK 45(20Q13.12) WILD-TYPE     97    101     69
D45V11, multiclass
        clus
vv       AMP PEAK 45(20Q13.12) MUTATED AMP PEAK 45(20Q13.12) WILD-TYPE
  CLUS_1                            24                              97
  CLUS_2                            76                             101
  CLUS_3                            25                              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 45(20Q13.12) MUTATED       73     22     30
  AMP PEAK 45(20Q13.12) WILD-TYPE     98     86     83
D45V12, multiclass
        clus
vv       AMP PEAK 45(20Q13.12) MUTATED AMP PEAK 45(20Q13.12) WILD-TYPE
  CLUS_1                            73                              98
  CLUS_2                            22                              86
  CLUS_3                            30                              83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = AMP PEAK 46(20Q13.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 46(20Q13.33) MUTATED        2      6      0      0
  AMP PEAK 46(20Q13.33) WILD-TYPE     12     11     12     10
D46V1, multiclass
        clus
vv       AMP PEAK 46(20Q13.33) MUTATED AMP PEAK 46(20Q13.33) WILD-TYPE
  CLUS_1                             2                              12
  CLUS_2                             6                              11
  CLUS_3                             0                              12
  CLUS_4                             0                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 46(20Q13.33) MUTATED        4      4      0      0      0
  AMP PEAK 46(20Q13.33) WILD-TYPE     10      5      7      7     16
D46V2, multiclass
        clus
vv       AMP PEAK 46(20Q13.33) MUTATED AMP PEAK 46(20Q13.33) WILD-TYPE
  CLUS_1                             4                              10
  CLUS_2                             4                               5
  CLUS_3                             0                               7
  CLUS_4                             0                               7
  CLUS_5                             0                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 46(20Q13.33) MUTATED       10     30     99      1      2
  AMP PEAK 46(20Q13.33) WILD-TYPE    295     18     55     11      3
D46V3, multiclass
        clus
vv       AMP PEAK 46(20Q13.33) MUTATED AMP PEAK 46(20Q13.33) WILD-TYPE
  CLUS_1                            10                             295
  CLUS_2                            30                              18
  CLUS_3                            99                              55
  CLUS_4                             1                              11
  CLUS_5                             2                               3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 46(20Q13.33) MUTATED       81     21     24
  AMP PEAK 46(20Q13.33) WILD-TYPE     77     65    142
D46V4, multiclass
        clus
vv       AMP PEAK 46(20Q13.33) MUTATED AMP PEAK 46(20Q13.33) WILD-TYPE
  CLUS_1                            81                              77
  CLUS_2                            21                              65
  CLUS_3                            24                             142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 46(20Q13.33) MUTATED        6     10      4      1      3      7
  AMP PEAK 46(20Q13.33) WILD-TYPE     35     27     35     11     38     17
D46V5, multiclass
        clus
vv       AMP PEAK 46(20Q13.33) MUTATED AMP PEAK 46(20Q13.33) WILD-TYPE
  CLUS_1                             6                              35
  CLUS_2                            10                              27
  CLUS_3                             4                              35
  CLUS_4                             1                              11
  CLUS_5                             3                              38
  CLUS_6                             7                              17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 46(20Q13.33) MUTATED       13      8      6      4
  AMP PEAK 46(20Q13.33) WILD-TYPE     54     59     37     13
D46V6, multiclass
        clus
vv       AMP PEAK 46(20Q13.33) MUTATED AMP PEAK 46(20Q13.33) WILD-TYPE
  CLUS_1                            13                              54
  CLUS_2                             8                              59
  CLUS_3                             6                              37
  CLUS_4                             4                              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 46(20Q13.33) MUTATED      107     15     20
  AMP PEAK 46(20Q13.33) WILD-TYPE    117    135    125
D46V7, multiclass
        clus
vv       AMP PEAK 46(20Q13.33) MUTATED AMP PEAK 46(20Q13.33) WILD-TYPE
  CLUS_1                           107                             117
  CLUS_2                            15                             135
  CLUS_3                            20                             125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 46(20Q13.33) MUTATED       90     30     22
  AMP PEAK 46(20Q13.33) WILD-TYPE     73    183    121
D46V8, multiclass
        clus
vv       AMP PEAK 46(20Q13.33) MUTATED AMP PEAK 46(20Q13.33) WILD-TYPE
  CLUS_1                            90                              73
  CLUS_2                            30                             183
  CLUS_3                            22                             121
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 46(20Q13.33) MUTATED       16    102     22
  AMP PEAK 46(20Q13.33) WILD-TYPE    125    117    133
D46V9, multiclass
        clus
vv       AMP PEAK 46(20Q13.33) MUTATED AMP PEAK 46(20Q13.33) WILD-TYPE
  CLUS_1                            16                             125
  CLUS_2                           102                             117
  CLUS_3                            22                             133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 46(20Q13.33) MUTATED        7     87     18     28
  AMP PEAK 46(20Q13.33) WILD-TYPE     48     75     98    154
D46V10, multiclass
        clus
vv       AMP PEAK 46(20Q13.33) MUTATED AMP PEAK 46(20Q13.33) WILD-TYPE
  CLUS_1                             7                              48
  CLUS_2                            87                              75
  CLUS_3                            18                              98
  CLUS_4                            28                             154
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 46(20Q13.33) MUTATED       24     71     25
  AMP PEAK 46(20Q13.33) WILD-TYPE     97    106     69
D46V11, multiclass
        clus
vv       AMP PEAK 46(20Q13.33) MUTATED AMP PEAK 46(20Q13.33) WILD-TYPE
  CLUS_1                            24                              97
  CLUS_2                            71                             106
  CLUS_3                            25                              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 46(20Q13.33) MUTATED       68     22     30
  AMP PEAK 46(20Q13.33) WILD-TYPE    103     86     83
D46V12, multiclass
        clus
vv       AMP PEAK 46(20Q13.33) MUTATED AMP PEAK 46(20Q13.33) WILD-TYPE
  CLUS_1                            68                             103
  CLUS_2                            22                              86
  CLUS_3                            30                              83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = AMP PEAK 47(22Q12.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 47(22Q12.2) MUTATED        1      3      0      0
  AMP PEAK 47(22Q12.2) WILD-TYPE     13     14     12     10
D47V1, multiclass
        clus
vv       AMP PEAK 47(22Q12.2) MUTATED AMP PEAK 47(22Q12.2) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                             14
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 47(22Q12.2) MUTATED        2      2      0      0      0
  AMP PEAK 47(22Q12.2) WILD-TYPE     12      7      7      7     16
D47V2, multiclass
        clus
vv       AMP PEAK 47(22Q12.2) MUTATED AMP PEAK 47(22Q12.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            2                              7
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 47(22Q12.2) MUTATED        4      5     49      0      1
  AMP PEAK 47(22Q12.2) WILD-TYPE    301     43    105     12      4
D47V3, multiclass
        clus
vv       AMP PEAK 47(22Q12.2) MUTATED AMP PEAK 47(22Q12.2) WILD-TYPE
  CLUS_1                            4                            301
  CLUS_2                            5                             43
  CLUS_3                           49                            105
  CLUS_4                            0                             12
  CLUS_5                            1                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 47(22Q12.2) MUTATED       46      8      0
  AMP PEAK 47(22Q12.2) WILD-TYPE    112     78    166
D47V4, multiclass
        clus
vv       AMP PEAK 47(22Q12.2) MUTATED AMP PEAK 47(22Q12.2) WILD-TYPE
  CLUS_1                           46                            112
  CLUS_2                            8                             78
  CLUS_3                            0                            166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 47(22Q12.2) MUTATED        3      3      0      0      0      2
  AMP PEAK 47(22Q12.2) WILD-TYPE     38     34     39     12     41     22
D47V5, multiclass
        clus
vv       AMP PEAK 47(22Q12.2) MUTATED AMP PEAK 47(22Q12.2) WILD-TYPE
  CLUS_1                            3                             38
  CLUS_2                            3                             34
  CLUS_3                            0                             39
  CLUS_4                            0                             12
  CLUS_5                            0                             41
  CLUS_6                            2                             22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 47(22Q12.2) MUTATED        6      0      0      2
  AMP PEAK 47(22Q12.2) WILD-TYPE     61     67     43     15
D47V6, multiclass
        clus
vv       AMP PEAK 47(22Q12.2) MUTATED AMP PEAK 47(22Q12.2) WILD-TYPE
  CLUS_1                            6                             61
  CLUS_2                            0                             67
  CLUS_3                            0                             43
  CLUS_4                            2                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 47(22Q12.2) MUTATED       57      1      0
  AMP PEAK 47(22Q12.2) WILD-TYPE    167    149    145
D47V7, multiclass
        clus
vv       AMP PEAK 47(22Q12.2) MUTATED AMP PEAK 47(22Q12.2) WILD-TYPE
  CLUS_1                           57                            167
  CLUS_2                            1                            149
  CLUS_3                            0                            145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 47(22Q12.2) MUTATED       54      4      0
  AMP PEAK 47(22Q12.2) WILD-TYPE    109    209    143
D47V8, multiclass
        clus
vv       AMP PEAK 47(22Q12.2) MUTATED AMP PEAK 47(22Q12.2) WILD-TYPE
  CLUS_1                           54                            109
  CLUS_2                            4                            209
  CLUS_3                            0                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 47(22Q12.2) MUTATED        1     57      0
  AMP PEAK 47(22Q12.2) WILD-TYPE    140    162    155
D47V9, multiclass
        clus
vv       AMP PEAK 47(22Q12.2) MUTATED AMP PEAK 47(22Q12.2) WILD-TYPE
  CLUS_1                            1                            140
  CLUS_2                           57                            162
  CLUS_3                            0                            155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 47(22Q12.2) MUTATED        1     49      1      7
  AMP PEAK 47(22Q12.2) WILD-TYPE     54    113    115    175
D47V10, multiclass
        clus
vv       AMP PEAK 47(22Q12.2) MUTATED AMP PEAK 47(22Q12.2) WILD-TYPE
  CLUS_1                            1                             54
  CLUS_2                           49                            113
  CLUS_3                            1                            115
  CLUS_4                            7                            175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 47(22Q12.2) MUTATED        2     43      8
  AMP PEAK 47(22Q12.2) WILD-TYPE    119    134     86
D47V11, multiclass
        clus
vv       AMP PEAK 47(22Q12.2) MUTATED AMP PEAK 47(22Q12.2) WILD-TYPE
  CLUS_1                            2                            119
  CLUS_2                           43                            134
  CLUS_3                            8                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 47(22Q12.2) MUTATED       35      2     16
  AMP PEAK 47(22Q12.2) WILD-TYPE    136    106     97
D47V12, multiclass
        clus
vv       AMP PEAK 47(22Q12.2) MUTATED AMP PEAK 47(22Q12.2) WILD-TYPE
  CLUS_1                           35                            136
  CLUS_2                            2                            106
  CLUS_3                           16                             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = AMP PEAK 48(XP11.23) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 48(XP11.23) MUTATED        1      4      2      0
  AMP PEAK 48(XP11.23) WILD-TYPE     13     13     10     10
D48V1, multiclass
        clus
vv       AMP PEAK 48(XP11.23) MUTATED AMP PEAK 48(XP11.23) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            4                             13
  CLUS_3                            2                             10
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 48(XP11.23) MUTATED        2      2      1      1      1
  AMP PEAK 48(XP11.23) WILD-TYPE     12      7      6      6     15
D48V2, multiclass
        clus
vv       AMP PEAK 48(XP11.23) MUTATED AMP PEAK 48(XP11.23) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            2                              7
  CLUS_3                            1                              6
  CLUS_4                            1                              6
  CLUS_5                            1                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 48(XP11.23) MUTATED       11     20     44     10      2
  AMP PEAK 48(XP11.23) WILD-TYPE    294     28    110      2      3
D48V3, multiclass
        clus
vv       AMP PEAK 48(XP11.23) MUTATED AMP PEAK 48(XP11.23) WILD-TYPE
  CLUS_1                           11                            294
  CLUS_2                           20                             28
  CLUS_3                           44                            110
  CLUS_4                           10                              2
  CLUS_5                            2                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 48(XP11.23) MUTATED       41     11     16
  AMP PEAK 48(XP11.23) WILD-TYPE    117     75    150
D48V4, multiclass
        clus
vv       AMP PEAK 48(XP11.23) MUTATED AMP PEAK 48(XP11.23) WILD-TYPE
  CLUS_1                           41                            117
  CLUS_2                           11                             75
  CLUS_3                           16                            150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 48(XP11.23) MUTATED        6      7      6      2      3      4
  AMP PEAK 48(XP11.23) WILD-TYPE     35     30     33     10     38     20
D48V5, multiclass
        clus
vv       AMP PEAK 48(XP11.23) MUTATED AMP PEAK 48(XP11.23) WILD-TYPE
  CLUS_1                            6                             35
  CLUS_2                            7                             30
  CLUS_3                            6                             33
  CLUS_4                            2                             10
  CLUS_5                            3                             38
  CLUS_6                            4                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 48(XP11.23) MUTATED        8     10      7      3
  AMP PEAK 48(XP11.23) WILD-TYPE     59     57     36     14
D48V6, multiclass
        clus
vv       AMP PEAK 48(XP11.23) MUTATED AMP PEAK 48(XP11.23) WILD-TYPE
  CLUS_1                            8                             59
  CLUS_2                           10                             57
  CLUS_3                            7                             36
  CLUS_4                            3                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 48(XP11.23) MUTATED       54     15     16
  AMP PEAK 48(XP11.23) WILD-TYPE    170    135    129
D48V7, multiclass
        clus
vv       AMP PEAK 48(XP11.23) MUTATED AMP PEAK 48(XP11.23) WILD-TYPE
  CLUS_1                           54                            170
  CLUS_2                           15                            135
  CLUS_3                           16                            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 48(XP11.23) MUTATED       46     23     16
  AMP PEAK 48(XP11.23) WILD-TYPE    117    190    127
D48V8, multiclass
        clus
vv       AMP PEAK 48(XP11.23) MUTATED AMP PEAK 48(XP11.23) WILD-TYPE
  CLUS_1                           46                            117
  CLUS_2                           23                            190
  CLUS_3                           16                            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 48(XP11.23) MUTATED       16     54     16
  AMP PEAK 48(XP11.23) WILD-TYPE    125    165    139
D48V9, multiclass
        clus
vv       AMP PEAK 48(XP11.23) MUTATED AMP PEAK 48(XP11.23) WILD-TYPE
  CLUS_1                           16                            125
  CLUS_2                           54                            165
  CLUS_3                           16                            139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 48(XP11.23) MUTATED        6     44     15     21
  AMP PEAK 48(XP11.23) WILD-TYPE     49    118    101    161
D48V10, multiclass
        clus
vv       AMP PEAK 48(XP11.23) MUTATED AMP PEAK 48(XP11.23) WILD-TYPE
  CLUS_1                            6                             49
  CLUS_2                           44                            118
  CLUS_3                           15                            101
  CLUS_4                           21                            161
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 48(XP11.23) MUTATED       12     40     15
  AMP PEAK 48(XP11.23) WILD-TYPE    109    137     79
D48V11, multiclass
        clus
vv       AMP PEAK 48(XP11.23) MUTATED AMP PEAK 48(XP11.23) WILD-TYPE
  CLUS_1                           12                            109
  CLUS_2                           40                            137
  CLUS_3                           15                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 48(XP11.23) MUTATED       37     12     18
  AMP PEAK 48(XP11.23) WILD-TYPE    134     96     95
D48V12, multiclass
        clus
vv       AMP PEAK 48(XP11.23) MUTATED AMP PEAK 48(XP11.23) WILD-TYPE
  CLUS_1                           37                            134
  CLUS_2                           12                             96
  CLUS_3                           18                             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = AMP PEAK 49(XQ28) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 49(XQ28) MUTATED        1      6      2      0
  AMP PEAK 49(XQ28) WILD-TYPE     13     11     10     10
D49V1, multiclass
        clus
vv       AMP PEAK 49(XQ28) MUTATED AMP PEAK 49(XQ28) WILD-TYPE
  CLUS_1                         1                          13
  CLUS_2                         6                          11
  CLUS_3                         2                          10
  CLUS_4                         0                          10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 49(XQ28) MUTATED        1      5      1      1      1
  AMP PEAK 49(XQ28) WILD-TYPE     13      4      6      6     15
D49V2, multiclass
        clus
vv       AMP PEAK 49(XQ28) MUTATED AMP PEAK 49(XQ28) WILD-TYPE
  CLUS_1                         1                          13
  CLUS_2                         5                           4
  CLUS_3                         1                           6
  CLUS_4                         1                           6
  CLUS_5                         1                          15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 49(XQ28) MUTATED       13     20     45      9      2
  AMP PEAK 49(XQ28) WILD-TYPE    292     28    109      3      3
D49V3, multiclass
        clus
vv       AMP PEAK 49(XQ28) MUTATED AMP PEAK 49(XQ28) WILD-TYPE
  CLUS_1                        13                         292
  CLUS_2                        20                          28
  CLUS_3                        45                         109
  CLUS_4                         9                           3
  CLUS_5                         2                           3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 49(XQ28) MUTATED       34     14     19
  AMP PEAK 49(XQ28) WILD-TYPE    124     72    147
D49V4, multiclass
        clus
vv       AMP PEAK 49(XQ28) MUTATED AMP PEAK 49(XQ28) WILD-TYPE
  CLUS_1                        34                         124
  CLUS_2                        14                          72
  CLUS_3                        19                         147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 49(XQ28) MUTATED        4      9      4      2      3      5
  AMP PEAK 49(XQ28) WILD-TYPE     37     28     35     10     38     19
D49V5, multiclass
        clus
vv       AMP PEAK 49(XQ28) MUTATED AMP PEAK 49(XQ28) WILD-TYPE
  CLUS_1                         4                          37
  CLUS_2                         9                          28
  CLUS_3                         4                          35
  CLUS_4                         2                          10
  CLUS_5                         3                          38
  CLUS_6                         5                          19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 49(XQ28) MUTATED       10      7      7      3
  AMP PEAK 49(XQ28) WILD-TYPE     57     60     36     14
D49V6, multiclass
        clus
vv       AMP PEAK 49(XQ28) MUTATED AMP PEAK 49(XQ28) WILD-TYPE
  CLUS_1                        10                          57
  CLUS_2                         7                          60
  CLUS_3                         7                          36
  CLUS_4                         3                          14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 49(XQ28) MUTATED       53     16     18
  AMP PEAK 49(XQ28) WILD-TYPE    171    134    127
D49V7, multiclass
        clus
vv       AMP PEAK 49(XQ28) MUTATED AMP PEAK 49(XQ28) WILD-TYPE
  CLUS_1                        53                         171
  CLUS_2                        16                         134
  CLUS_3                        18                         127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 49(XQ28) MUTATED       44     27     16
  AMP PEAK 49(XQ28) WILD-TYPE    119    186    127
D49V8, multiclass
        clus
vv       AMP PEAK 49(XQ28) MUTATED AMP PEAK 49(XQ28) WILD-TYPE
  CLUS_1                        44                         119
  CLUS_2                        27                         186
  CLUS_3                        16                         127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 49(XQ28) MUTATED       19     51     16
  AMP PEAK 49(XQ28) WILD-TYPE    122    168    139
D49V9, multiclass
        clus
vv       AMP PEAK 49(XQ28) MUTATED AMP PEAK 49(XQ28) WILD-TYPE
  CLUS_1                        19                         122
  CLUS_2                        51                         168
  CLUS_3                        16                         139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 49(XQ28) MUTATED        7     37     16     26
  AMP PEAK 49(XQ28) WILD-TYPE     48    125    100    156
D49V10, multiclass
        clus
vv       AMP PEAK 49(XQ28) MUTATED AMP PEAK 49(XQ28) WILD-TYPE
  CLUS_1                         7                          48
  CLUS_2                        37                         125
  CLUS_3                        16                         100
  CLUS_4                        26                         156
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 49(XQ28) MUTATED       15     39     14
  AMP PEAK 49(XQ28) WILD-TYPE    106    138     80
D49V11, multiclass
        clus
vv       AMP PEAK 49(XQ28) MUTATED AMP PEAK 49(XQ28) WILD-TYPE
  CLUS_1                        15                         106
  CLUS_2                        39                         138
  CLUS_3                        14                          80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 49(XQ28) MUTATED       32     18     18
  AMP PEAK 49(XQ28) WILD-TYPE    139     90     95
D49V12, multiclass
        clus
vv       AMP PEAK 49(XQ28) MUTATED AMP PEAK 49(XQ28) WILD-TYPE
  CLUS_1                        32                         139
  CLUS_2                        18                          90
  CLUS_3                        18                          95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = DEL PEAK  1(1P36.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.21) MUTATED        2      6      0      0
  DEL PEAK  1(1P36.21) WILD-TYPE     12     11     12     10
D50V1, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            6                             11
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.21) MUTATED        3      5      0      0      0
  DEL PEAK  1(1P36.21) WILD-TYPE     11      4      7      7     16
D50V2, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            5                              4
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P36.21) MUTATED        3      8     57      0      2
  DEL PEAK  1(1P36.21) WILD-TYPE    302     40     97     12      3
D50V3, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            3                            302
  CLUS_2                            8                             40
  CLUS_3                           57                             97
  CLUS_4                            0                             12
  CLUS_5                            2                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED       38     15      6
  DEL PEAK  1(1P36.21) WILD-TYPE    120     71    160
D50V4, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           38                            120
  CLUS_2                           15                             71
  CLUS_3                            6                            160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  1(1P36.21) MUTATED        3      8      0      0      1      3
  DEL PEAK  1(1P36.21) WILD-TYPE     38     29     39     12     40     21
D50V5, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            3                             38
  CLUS_2                            8                             29
  CLUS_3                            0                             39
  CLUS_4                            0                             12
  CLUS_5                            1                             40
  CLUS_6                            3                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.21) MUTATED        8      3      2      2
  DEL PEAK  1(1P36.21) WILD-TYPE     59     64     41     15
D50V6, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            8                             59
  CLUS_2                            3                             64
  CLUS_3                            2                             41
  CLUS_4                            2                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED       60      6      4
  DEL PEAK  1(1P36.21) WILD-TYPE    164    144    141
D50V7, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           60                            164
  CLUS_2                            6                            144
  CLUS_3                            4                            141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED       49     18      3
  DEL PEAK  1(1P36.21) WILD-TYPE    114    195    140
D50V8, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           49                            114
  CLUS_2                           18                            195
  CLUS_3                            3                            140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED        8     53      6
  DEL PEAK  1(1P36.21) WILD-TYPE    133    166    149
D50V9, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            8                            133
  CLUS_2                           53                            166
  CLUS_3                            6                            149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  1(1P36.21) MUTATED        1     47      2     17
  DEL PEAK  1(1P36.21) WILD-TYPE     54    115    114    165
D50V10, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            1                             54
  CLUS_2                           47                            115
  CLUS_3                            2                            114
  CLUS_4                           17                            165
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED        7     27     25
  DEL PEAK  1(1P36.21) WILD-TYPE    114    150     69
D50V11, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            7                            114
  CLUS_2                           27                            150
  CLUS_3                           25                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P36.21) MUTATED       31      5     23
  DEL PEAK  1(1P36.21) WILD-TYPE    140    103     90
D50V12, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           31                            140
  CLUS_2                            5                            103
  CLUS_3                           23                             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = DEL PEAK  2(1P36.11) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P36.11) MUTATED        1      5      0      0
  DEL PEAK  2(1P36.11) WILD-TYPE     13     12     12     10
D51V1, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            5                             12
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P36.11) MUTATED        2      4      0      0      0
  DEL PEAK  2(1P36.11) WILD-TYPE     12      5      7      7     16
D51V2, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            4                              5
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P36.11) MUTATED        2      8     70      0      2
  DEL PEAK  2(1P36.11) WILD-TYPE    303     40     84     12      3
D51V3, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                            2                            303
  CLUS_2                            8                             40
  CLUS_3                           70                             84
  CLUS_4                            0                             12
  CLUS_5                            2                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.11) MUTATED       55     12      6
  DEL PEAK  2(1P36.11) WILD-TYPE    103     74    160
D51V4, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           55                            103
  CLUS_2                           12                             74
  CLUS_3                            6                            160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(1P36.11) MUTATED        3      7      0      1      1      2
  DEL PEAK  2(1P36.11) WILD-TYPE     38     30     39     11     40     22
D51V5, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                            3                             38
  CLUS_2                            7                             30
  CLUS_3                            0                             39
  CLUS_4                            1                             11
  CLUS_5                            1                             40
  CLUS_6                            2                             22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P36.11) MUTATED        7      3      3      1
  DEL PEAK  2(1P36.11) WILD-TYPE     60     64     40     16
D51V6, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                            7                             60
  CLUS_2                            3                             64
  CLUS_3                            3                             40
  CLUS_4                            1                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.11) MUTATED       72      6      4
  DEL PEAK  2(1P36.11) WILD-TYPE    152    144    141
D51V7, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           72                            152
  CLUS_2                            6                            144
  CLUS_3                            4                            141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.11) MUTATED       60     19      3
  DEL PEAK  2(1P36.11) WILD-TYPE    103    194    140
D51V8, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           60                            103
  CLUS_2                           19                            194
  CLUS_3                            3                            140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.11) MUTATED        7     65      7
  DEL PEAK  2(1P36.11) WILD-TYPE    134    154    148
D51V9, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                            7                            134
  CLUS_2                           65                            154
  CLUS_3                            7                            148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(1P36.11) MUTATED        1     58      2     18
  DEL PEAK  2(1P36.11) WILD-TYPE     54    104    114    164
D51V10, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                            1                             54
  CLUS_2                           58                            104
  CLUS_3                            2                            114
  CLUS_4                           18                            164
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.11) MUTATED        8     44     21
  DEL PEAK  2(1P36.11) WILD-TYPE    113    133     73
D51V11, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                            8                            113
  CLUS_2                           44                            133
  CLUS_3                           21                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P36.11) MUTATED       44      6     23
  DEL PEAK  2(1P36.11) WILD-TYPE    127    102     90
D51V12, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           44                            127
  CLUS_2                            6                            102
  CLUS_3                           23                             90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = DEL PEAK  3(2P25.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED        0      1      0      0
  DEL PEAK  3(2P25.3) WILD-TYPE     14     16     12     10
D52V1, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  3(2P25.3) MUTATED"
clus
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                            1                            52 
                   TCGA-A5-A0G2                    TCGA-A5-A0G5 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GA                    TCGA-A5-A0GB 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GE                    TCGA-A5-A0GH 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GM                    TCGA-A5-A0GP 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GU                    TCGA-AP-A051 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A052                    TCGA-AP-A053 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A054                    TCGA-AP-A056 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05A                    TCGA-AP-A05D 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05H                    TCGA-AP-A05J 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05N                    TCGA-AP-A05P 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0L8                    TCGA-AP-A0LD 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LG                    TCGA-AP-A0LH 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LJ                    TCGA-AP-A0LN 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LT                    TCGA-AP-A0LV 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05S                    TCGA-AX-A05T 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05U                    TCGA-AX-A05W 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05Y                    TCGA-AX-A05Z 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A060                    TCGA-AX-A062 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A063                    TCGA-AX-A064 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A06B                    TCGA-AX-A06F 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A06J                    TCGA-AX-A0IW 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A0J1                    TCGA-B5-A0JR 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-B5-A0JZ                    TCGA-B5-A0K0 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-B5-A0K1                    TCGA-B5-A0K4 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-BG-A0LW                    TCGA-BG-A0MI 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-BK-A0C9                    TCGA-BK-A0CC 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2P25.3) MUTATED        0      1      0      0      0
  DEL PEAK  3(2P25.3) WILD-TYPE     14      8      7      7     16
D52V2, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  3(2P25.3) MUTATED"
clus
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                            1                            52 
                   TCGA-A5-A0G2                    TCGA-A5-A0G5 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GA                    TCGA-A5-A0GB 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GE                    TCGA-A5-A0GH 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GM                    TCGA-A5-A0GP 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GU                    TCGA-AP-A051 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A052                    TCGA-AP-A053 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A054                    TCGA-AP-A056 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05A                    TCGA-AP-A05D 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05H                    TCGA-AP-A05J 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05N                    TCGA-AP-A05P 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0L8                    TCGA-AP-A0LD 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LG                    TCGA-AP-A0LH 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LJ                    TCGA-AP-A0LN 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LT                    TCGA-AP-A0LV 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05S                    TCGA-AX-A05T 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05U                    TCGA-AX-A05W 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05Y                    TCGA-AX-A05Z 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A060                    TCGA-AX-A062 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A063                    TCGA-AX-A064 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A06B                    TCGA-AX-A06F 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A06J                    TCGA-AX-A0IW 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-AX-A0J1                    TCGA-B5-A0JR 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-B5-A0JZ                    TCGA-B5-A0K0 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-B5-A0K1                    TCGA-B5-A0K4 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-BG-A0LW                    TCGA-BG-A0MI 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-BK-A0C9                    TCGA-BK-A0CC 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(2P25.3) MUTATED        2      1     22      0      0
  DEL PEAK  3(2P25.3) WILD-TYPE    303     47    132     12      5
D52V3, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           2                           303
  CLUS_2                           1                            47
  CLUS_3                          22                           132
  CLUS_4                           0                            12
  CLUS_5                           0                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       18      4      2
  DEL PEAK  3(2P25.3) WILD-TYPE    140     82    164
D52V4, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          18                           140
  CLUS_2                           4                            82
  CLUS_3                           2                           164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(2P25.3) MUTATED        2      0      1      0      0      2
  DEL PEAK  3(2P25.3) WILD-TYPE     39     37     38     12     41     22
D52V5, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           2                            39
  CLUS_2                           0                            37
  CLUS_3                           1                            38
  CLUS_4                           0                            12
  CLUS_5                           0                            41
  CLUS_6                           2                            22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED        2      1      0      2
  DEL PEAK  3(2P25.3) WILD-TYPE     65     66     43     15
D52V6, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           2                            65
  CLUS_2                           1                            66
  CLUS_3                           0                            43
  CLUS_4                           2                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       21      1      3
  DEL PEAK  3(2P25.3) WILD-TYPE    203    149    142
D52V7, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          21                           203
  CLUS_2                           1                           149
  CLUS_3                           3                           142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       18      4      3
  DEL PEAK  3(2P25.3) WILD-TYPE    145    209    140
D52V8, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          18                           145
  CLUS_2                           4                           209
  CLUS_3                           3                           140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED        2     20      3
  DEL PEAK  3(2P25.3) WILD-TYPE    139    199    152
D52V9, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           2                           139
  CLUS_2                          20                           199
  CLUS_3                           3                           152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(2P25.3) MUTATED        1     17      3      4
  DEL PEAK  3(2P25.3) WILD-TYPE     54    145    113    178
D52V10, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           1                            54
  CLUS_2                          17                           145
  CLUS_3                           3                           113
  CLUS_4                           4                           178
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED        4     13      5
  DEL PEAK  3(2P25.3) WILD-TYPE    117    164     89
D52V11, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           4                           117
  CLUS_2                          13                           164
  CLUS_3                           5                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(2P25.3) MUTATED       11      4      7
  DEL PEAK  3(2P25.3) WILD-TYPE    160    104    106
D52V12, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          11                           160
  CLUS_2                           4                           104
  CLUS_3                           7                           106
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = DEL PEAK  4(2Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED        0      4      0      0
  DEL PEAK  4(2Q22.1) WILD-TYPE     14     13     12     10
D53V1, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           4                            13
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q22.1) MUTATED        0      4      0      0      0
  DEL PEAK  4(2Q22.1) WILD-TYPE     14      5      7      7     16
D53V2, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           4                             5
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q22.1) MUTATED        0      4     42      0      0
  DEL PEAK  4(2Q22.1) WILD-TYPE    305     44    112     12      5
D53V3, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           0                           305
  CLUS_2                           4                            44
  CLUS_3                          42                           112
  CLUS_4                           0                            12
  CLUS_5                           0                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       28      8      4
  DEL PEAK  4(2Q22.1) WILD-TYPE    130     78    162
D53V4, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          28                           130
  CLUS_2                           8                            78
  CLUS_3                           4                           162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(2Q22.1) MUTATED        2      3      0      0      0      3
  DEL PEAK  4(2Q22.1) WILD-TYPE     39     34     39     12     41     21
D53V5, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           2                            39
  CLUS_2                           3                            34
  CLUS_3                           0                            39
  CLUS_4                           0                            12
  CLUS_5                           0                            41
  CLUS_6                           3                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED        4      1      0      3
  DEL PEAK  4(2Q22.1) WILD-TYPE     63     66     43     14
D53V6, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           4                            63
  CLUS_2                           1                            66
  CLUS_3                           0                            43
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       41      0      5
  DEL PEAK  4(2Q22.1) WILD-TYPE    183    150    140
D53V7, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          41                           183
  CLUS_2                           0                           150
  CLUS_3                           5                           140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       32      8      6
  DEL PEAK  4(2Q22.1) WILD-TYPE    131    205    137
D53V8, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          32                           131
  CLUS_2                           8                           205
  CLUS_3                           6                           137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED        4     36      4
  DEL PEAK  4(2Q22.1) WILD-TYPE    137    183    151
D53V9, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           4                           137
  CLUS_2                          36                           183
  CLUS_3                           4                           151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(2Q22.1) MUTATED        0     30      4     10
  DEL PEAK  4(2Q22.1) WILD-TYPE     55    132    112    172
D53V10, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           0                            55
  CLUS_2                          30                           132
  CLUS_3                           4                           112
  CLUS_4                          10                           172
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED        6     27      6
  DEL PEAK  4(2Q22.1) WILD-TYPE    115    150     88
D53V11, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           6                           115
  CLUS_2                          27                           150
  CLUS_3                           6                            88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q22.1) MUTATED       23      8      8
  DEL PEAK  4(2Q22.1) WILD-TYPE    148    100    105
D53V12, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          23                           148
  CLUS_2                           8                           100
  CLUS_3                           8                           105
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = DEL PEAK  5(2Q37.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED        0      1      0      0
  DEL PEAK  5(2Q37.3) WILD-TYPE     14     16     12     10
D54V1, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  5(2Q37.3) MUTATED"
clus
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                            1                            52 
                   TCGA-A5-A0G2                    TCGA-A5-A0G5 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GA                    TCGA-A5-A0GB 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GE                    TCGA-A5-A0GH 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GM                    TCGA-A5-A0GP 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GU                    TCGA-AP-A051 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A052                    TCGA-AP-A053 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A054                    TCGA-AP-A056 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05D                    TCGA-AP-A05H 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05J                    TCGA-AP-A05N 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05P                    TCGA-AP-A0L8 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0L9                    TCGA-AP-A0LD 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LG                    TCGA-AP-A0LH 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LJ                    TCGA-AP-A0LN 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LT                    TCGA-AP-A0LV 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05S                    TCGA-AX-A05T 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05U                    TCGA-AX-A05W 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05Y                    TCGA-AX-A05Z 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A060                    TCGA-AX-A062 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A063                    TCGA-AX-A064 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A06B                    TCGA-AX-A06F 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A06J                    TCGA-AX-A0IW 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A0J1                    TCGA-B5-A0JR 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-B5-A0JZ                    TCGA-B5-A0K0 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-B5-A0K1                    TCGA-B5-A0K4 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-BG-A0LW                    TCGA-BG-A0MI 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-BK-A0C9                    TCGA-BK-A0CC 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q37.3) MUTATED        0      1      0      0      0
  DEL PEAK  5(2Q37.3) WILD-TYPE     14      8      7      7     16
D54V2, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  5(2Q37.3) MUTATED"
clus
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                            1                            52 
                   TCGA-A5-A0G2                    TCGA-A5-A0G5 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GA                    TCGA-A5-A0GB 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GE                    TCGA-A5-A0GH 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GM                    TCGA-A5-A0GP 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GU                    TCGA-AP-A051 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A052                    TCGA-AP-A053 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A054                    TCGA-AP-A056 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05D                    TCGA-AP-A05H 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05J                    TCGA-AP-A05N 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05P                    TCGA-AP-A0L8 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0L9                    TCGA-AP-A0LD 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LG                    TCGA-AP-A0LH 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LJ                    TCGA-AP-A0LN 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LT                    TCGA-AP-A0LV 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05S                    TCGA-AX-A05T 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05U                    TCGA-AX-A05W 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05Y                    TCGA-AX-A05Z 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A060                    TCGA-AX-A062 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A063                    TCGA-AX-A064 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A06B                    TCGA-AX-A06F 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A06J                    TCGA-AX-A0IW 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A0J1                    TCGA-B5-A0JR 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-B5-A0JZ                    TCGA-B5-A0K0 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-B5-A0K1                    TCGA-B5-A0K4 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-BG-A0LW                    TCGA-BG-A0MI 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-BK-A0C9                    TCGA-BK-A0CC 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(2Q37.3) MUTATED        2      7     42      0      0
  DEL PEAK  5(2Q37.3) WILD-TYPE    303     41    112     12      5
D54V3, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           2                           303
  CLUS_2                           7                            41
  CLUS_3                          42                           112
  CLUS_4                           0                            12
  CLUS_5                           0                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       33      6      8
  DEL PEAK  5(2Q37.3) WILD-TYPE    125     80    158
D54V4, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          33                           125
  CLUS_2                           6                            80
  CLUS_3                           8                           158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(2Q37.3) MUTATED        4      3      0      0      1      2
  DEL PEAK  5(2Q37.3) WILD-TYPE     37     34     39     12     40     22
D54V5, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           4                            37
  CLUS_2                           3                            34
  CLUS_3                           0                            39
  CLUS_4                           0                            12
  CLUS_5                           1                            40
  CLUS_6                           2                            22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED        4      4      1      1
  DEL PEAK  5(2Q37.3) WILD-TYPE     63     63     42     16
D54V6, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           4                            63
  CLUS_2                           4                            63
  CLUS_3                           1                            42
  CLUS_4                           1                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       40      3      7
  DEL PEAK  5(2Q37.3) WILD-TYPE    184    147    138
D54V7, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          40                           184
  CLUS_2                           3                           147
  CLUS_3                           7                           138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       30     13      7
  DEL PEAK  5(2Q37.3) WILD-TYPE    133    200    136
D54V8, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          30                           133
  CLUS_2                          13                           200
  CLUS_3                           7                           136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED        5     37      8
  DEL PEAK  5(2Q37.3) WILD-TYPE    136    182    147
D54V9, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           5                           136
  CLUS_2                          37                           182
  CLUS_3                           8                           147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(2Q37.3) MUTATED        2     28      7     13
  DEL PEAK  5(2Q37.3) WILD-TYPE     53    134    109    169
D54V10, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           2                            53
  CLUS_2                          28                           134
  CLUS_3                           7                           109
  CLUS_4                          13                           169
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED        9     28      8
  DEL PEAK  5(2Q37.3) WILD-TYPE    112    149     86
D54V11, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           9                           112
  CLUS_2                          28                           149
  CLUS_3                           8                            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(2Q37.3) MUTATED       25      9     11
  DEL PEAK  5(2Q37.3) WILD-TYPE    146     99    102
D54V12, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          25                           146
  CLUS_2                           9                            99
  CLUS_3                          11                           102
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = DEL PEAK  6(3P14.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P14.2) MUTATED        1      5      0      0
  DEL PEAK  6(3P14.2) WILD-TYPE     13     12     12     10
D55V1, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           5                            12
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3P14.2) MUTATED        2      4      0      0      0
  DEL PEAK  6(3P14.2) WILD-TYPE     12      5      7      7     16
D55V2, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           4                             5
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(3P14.2) MUTATED        0      8     66      0      1
  DEL PEAK  6(3P14.2) WILD-TYPE    305     40     88     12      4
D55V3, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                           0                           305
  CLUS_2                           8                            40
  CLUS_3                          66                            88
  CLUS_4                           0                            12
  CLUS_5                           1                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       47     12      5
  DEL PEAK  6(3P14.2) WILD-TYPE    111     74    161
D55V4, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          47                           111
  CLUS_2                          12                            74
  CLUS_3                           5                           161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(3P14.2) MUTATED        3     10      1      0      1      2
  DEL PEAK  6(3P14.2) WILD-TYPE     38     27     38     12     40     22
D55V5, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                           3                            38
  CLUS_2                          10                            27
  CLUS_3                           1                            38
  CLUS_4                           0                            12
  CLUS_5                           1                            40
  CLUS_6                           2                            22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P14.2) MUTATED       11      3      2      1
  DEL PEAK  6(3P14.2) WILD-TYPE     56     64     41     16
D55V6, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          11                            56
  CLUS_2                           3                            64
  CLUS_3                           2                            41
  CLUS_4                           1                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       69      1      4
  DEL PEAK  6(3P14.2) WILD-TYPE    155    149    141
D55V7, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          69                           155
  CLUS_2                           1                           149
  CLUS_3                           4                           141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       56     13      5
  DEL PEAK  6(3P14.2) WILD-TYPE    107    200    138
D55V8, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          56                           107
  CLUS_2                          13                           200
  CLUS_3                           5                           138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED        8     61      4
  DEL PEAK  6(3P14.2) WILD-TYPE    133    158    151
D55V9, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                           8                           133
  CLUS_2                          61                           158
  CLUS_3                           4                           151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(3P14.2) MUTATED        1     53      4     15
  DEL PEAK  6(3P14.2) WILD-TYPE     54    109    112    167
D55V10, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                           1                            54
  CLUS_2                          53                           109
  CLUS_3                           4                           112
  CLUS_4                          15                           167
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED        6     40     16
  DEL PEAK  6(3P14.2) WILD-TYPE    115    137     78
D55V11, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                           6                           115
  CLUS_2                          40                           137
  CLUS_3                          16                            78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(3P14.2) MUTATED       39      5     18
  DEL PEAK  6(3P14.2) WILD-TYPE    132    103     95
D55V12, multiclass
        clus
vv       DEL PEAK  6(3P14.2) MUTATED DEL PEAK  6(3P14.2) WILD-TYPE
  CLUS_1                          39                           132
  CLUS_2                           5                           103
  CLUS_3                          18                            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = DEL PEAK  7(3Q13.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q13.31) MUTATED        1      3      0      0
  DEL PEAK  7(3Q13.31) WILD-TYPE     13     14     12     10
D56V1, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                             14
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3Q13.31) MUTATED        1      3      0      0      0
  DEL PEAK  7(3Q13.31) WILD-TYPE     13      6      7      7     16
D56V2, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                              6
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  7(3Q13.31) MUTATED        1      1     28      0      1
  DEL PEAK  7(3Q13.31) WILD-TYPE    304     47    126     12      4
D56V3, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            1                            304
  CLUS_2                            1                             47
  CLUS_3                           28                            126
  CLUS_4                            0                             12
  CLUS_5                            1                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       19      4      4
  DEL PEAK  7(3Q13.31) WILD-TYPE    139     82    162
D56V4, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           19                            139
  CLUS_2                            4                             82
  CLUS_3                            4                            162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  7(3Q13.31) MUTATED        0      2      1      0      0      3
  DEL PEAK  7(3Q13.31) WILD-TYPE     41     35     38     12     41     21
D56V5, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            0                             41
  CLUS_2                            2                             35
  CLUS_3                            1                             38
  CLUS_4                            0                             12
  CLUS_5                            0                             41
  CLUS_6                            3                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q13.31) MUTATED        2      0      1      3
  DEL PEAK  7(3Q13.31) WILD-TYPE     65     67     42     14
D56V6, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            2                             65
  CLUS_2                            0                             67
  CLUS_3                            1                             42
  CLUS_4                            3                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       27      1      3
  DEL PEAK  7(3Q13.31) WILD-TYPE    197    149    142
D56V7, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           27                            197
  CLUS_2                            1                            149
  CLUS_3                            3                            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       23      5      3
  DEL PEAK  7(3Q13.31) WILD-TYPE    140    208    140
D56V8, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           23                            140
  CLUS_2                            5                            208
  CLUS_3                            3                            140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED        3     25      2
  DEL PEAK  7(3Q13.31) WILD-TYPE    138    194    153
D56V9, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            3                            138
  CLUS_2                           25                            194
  CLUS_3                            2                            153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  7(3Q13.31) MUTATED        1     21      1      7
  DEL PEAK  7(3Q13.31) WILD-TYPE     54    141    115    175
D56V10, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            1                             54
  CLUS_2                           21                            141
  CLUS_3                            1                            115
  CLUS_4                            7                            175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED        4     14      8
  DEL PEAK  7(3Q13.31) WILD-TYPE    117    163     86
D56V11, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                            4                            117
  CLUS_2                           14                            163
  CLUS_3                            8                             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  7(3Q13.31) MUTATED       12      4     10
  DEL PEAK  7(3Q13.31) WILD-TYPE    159    104    103
D56V12, multiclass
        clus
vv       DEL PEAK  7(3Q13.31) MUTATED DEL PEAK  7(3Q13.31) WILD-TYPE
  CLUS_1                           12                            159
  CLUS_2                            4                            104
  CLUS_3                           10                            103
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = DEL PEAK  8(4P16.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4P16.3) MUTATED        1      6      0      0
  DEL PEAK  8(4P16.3) WILD-TYPE     13     11     12     10
D57V1, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           6                            11
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4P16.3) MUTATED        2      5      0      0      0
  DEL PEAK  8(4P16.3) WILD-TYPE     12      4      7      7     16
D57V2, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           5                             4
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(4P16.3) MUTATED        4     13     71      1      2
  DEL PEAK  8(4P16.3) WILD-TYPE    301     35     83     11      3
D57V3, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                           4                           301
  CLUS_2                          13                            35
  CLUS_3                          71                            83
  CLUS_4                           1                            11
  CLUS_5                           2                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED       59     13      7
  DEL PEAK  8(4P16.3) WILD-TYPE     99     73    159
D57V4, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          59                            99
  CLUS_2                          13                            73
  CLUS_3                           7                           159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(4P16.3) MUTATED        5      9      0      1      2      5
  DEL PEAK  8(4P16.3) WILD-TYPE     36     28     39     11     39     19
D57V5, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                           5                            36
  CLUS_2                           9                            28
  CLUS_3                           0                            39
  CLUS_4                           1                            11
  CLUS_5                           2                            39
  CLUS_6                           5                            19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4P16.3) MUTATED       10      5      4      3
  DEL PEAK  8(4P16.3) WILD-TYPE     57     62     39     14
D57V6, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          10                            57
  CLUS_2                           5                            62
  CLUS_3                           4                            39
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED       76      6      9
  DEL PEAK  8(4P16.3) WILD-TYPE    148    144    136
D57V7, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          76                           148
  CLUS_2                           6                           144
  CLUS_3                           9                           136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED       66     17      8
  DEL PEAK  8(4P16.3) WILD-TYPE     97    196    135
D57V8, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          66                            97
  CLUS_2                          17                           196
  CLUS_3                           8                           135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED        8     70     10
  DEL PEAK  8(4P16.3) WILD-TYPE    133    149    145
D57V9, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                           8                           133
  CLUS_2                          70                           149
  CLUS_3                          10                           145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(4P16.3) MUTATED        2     59      4     23
  DEL PEAK  8(4P16.3) WILD-TYPE     53    103    112    159
D57V10, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                           2                            53
  CLUS_2                          59                           103
  CLUS_3                           4                           112
  CLUS_4                          23                           159
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED       10     48     21
  DEL PEAK  8(4P16.3) WILD-TYPE    111    129     73
D57V11, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          10                           111
  CLUS_2                          48                           129
  CLUS_3                          21                            73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(4P16.3) MUTATED       48      9     22
  DEL PEAK  8(4P16.3) WILD-TYPE    123     99     91
D57V12, multiclass
        clus
vv       DEL PEAK  8(4P16.3) MUTATED DEL PEAK  8(4P16.3) WILD-TYPE
  CLUS_1                          48                           123
  CLUS_2                           9                            99
  CLUS_3                          22                            91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = DEL PEAK  9(4P15.31) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4P15.31) MUTATED        1      6      0      0
  DEL PEAK  9(4P15.31) WILD-TYPE     13     11     12     10
D58V1, multiclass
        clus
vv       DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            6                             11
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4P15.31) MUTATED        3      4      0      0      0
  DEL PEAK  9(4P15.31) WILD-TYPE     11      5      7      7     16
D58V2, multiclass
        clus
vv       DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            4                              5
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(4P15.31) MUTATED        3     13     76      1      2
  DEL PEAK  9(4P15.31) WILD-TYPE    302     35     78     11      3
D58V3, multiclass
        clus
vv       DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE
  CLUS_1                            3                            302
  CLUS_2                           13                             35
  CLUS_3                           76                             78
  CLUS_4                            1                             11
  CLUS_5                            2                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P15.31) MUTATED       64     14      6
  DEL PEAK  9(4P15.31) WILD-TYPE     94     72    160
D58V4, multiclass
        clus
vv       DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE
  CLUS_1                           64                             94
  CLUS_2                           14                             72
  CLUS_3                            6                            160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  9(4P15.31) MUTATED        5      8      0      1      2      5
  DEL PEAK  9(4P15.31) WILD-TYPE     36     29     39     11     39     19
D58V5, multiclass
        clus
vv       DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE
  CLUS_1                            5                             36
  CLUS_2                            8                             29
  CLUS_3                            0                             39
  CLUS_4                            1                             11
  CLUS_5                            2                             39
  CLUS_6                            5                             19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4P15.31) MUTATED        9      5      4      3
  DEL PEAK  9(4P15.31) WILD-TYPE     58     62     39     14
D58V6, multiclass
        clus
vv       DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE
  CLUS_1                            9                             58
  CLUS_2                            5                             62
  CLUS_3                            4                             39
  CLUS_4                            3                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P15.31) MUTATED       81      6      8
  DEL PEAK  9(4P15.31) WILD-TYPE    143    144    137
D58V7, multiclass
        clus
vv       DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE
  CLUS_1                           81                            143
  CLUS_2                            6                            144
  CLUS_3                            8                            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P15.31) MUTATED       68     20      7
  DEL PEAK  9(4P15.31) WILD-TYPE     95    193    136
D58V8, multiclass
        clus
vv       DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE
  CLUS_1                           68                             95
  CLUS_2                           20                            193
  CLUS_3                            7                            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P15.31) MUTATED        8     76      9
  DEL PEAK  9(4P15.31) WILD-TYPE    133    143    146
D58V9, multiclass
        clus
vv       DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE
  CLUS_1                            8                            133
  CLUS_2                           76                            143
  CLUS_3                            9                            146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  9(4P15.31) MUTATED        2     64      3     24
  DEL PEAK  9(4P15.31) WILD-TYPE     53     98    113    158
D58V10, multiclass
        clus
vv       DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE
  CLUS_1                            2                             53
  CLUS_2                           64                             98
  CLUS_3                            3                            113
  CLUS_4                           24                            158
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P15.31) MUTATED        9     54     21
  DEL PEAK  9(4P15.31) WILD-TYPE    112    123     73
D58V11, multiclass
        clus
vv       DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE
  CLUS_1                            9                            112
  CLUS_2                           54                            123
  CLUS_3                           21                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(4P15.31) MUTATED       51      8     25
  DEL PEAK  9(4P15.31) WILD-TYPE    120    100     88
D58V12, multiclass
        clus
vv       DEL PEAK  9(4P15.31) MUTATED DEL PEAK  9(4P15.31) WILD-TYPE
  CLUS_1                           51                            120
  CLUS_2                            8                            100
  CLUS_3                           25                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = DEL PEAK 10(4Q22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q22.1) MUTATED        1      7      0      0
  DEL PEAK 10(4Q22.1) WILD-TYPE     13     10     12     10
D59V1, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           7                            10
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(4Q22.1) MUTATED        2      6      0      0      0
  DEL PEAK 10(4Q22.1) WILD-TYPE     12      3      7      7     16
D59V2, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           6                             3
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(4Q22.1) MUTATED        2      9     88      1      2
  DEL PEAK 10(4Q22.1) WILD-TYPE    303     39     66     11      3
D59V3, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                           2                           303
  CLUS_2                           9                            39
  CLUS_3                          88                            66
  CLUS_4                           1                            11
  CLUS_5                           2                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED       67     16      5
  DEL PEAK 10(4Q22.1) WILD-TYPE     91     70    161
D59V4, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          67                            91
  CLUS_2                          16                            70
  CLUS_3                           5                           161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(4Q22.1) MUTATED        6      8      1      1      1      5
  DEL PEAK 10(4Q22.1) WILD-TYPE     35     29     38     11     40     19
D59V5, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                           6                            35
  CLUS_2                           8                            29
  CLUS_3                           1                            38
  CLUS_4                           1                            11
  CLUS_5                           1                            40
  CLUS_6                           5                            19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q22.1) MUTATED       11      5      3      3
  DEL PEAK 10(4Q22.1) WILD-TYPE     56     62     40     14
D59V6, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          11                            56
  CLUS_2                           5                            62
  CLUS_3                           3                            40
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED       90      6      6
  DEL PEAK 10(4Q22.1) WILD-TYPE    134    144    139
D59V7, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          90                           134
  CLUS_2                           6                           144
  CLUS_3                           6                           139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED       76     20      6
  DEL PEAK 10(4Q22.1) WILD-TYPE     87    193    137
D59V8, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          76                            87
  CLUS_2                          20                           193
  CLUS_3                           6                           137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED        6     85      8
  DEL PEAK 10(4Q22.1) WILD-TYPE    135    134    147
D59V9, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                           6                           135
  CLUS_2                          85                           134
  CLUS_3                           8                           147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(4Q22.1) MUTATED        1     75      2     21
  DEL PEAK 10(4Q22.1) WILD-TYPE     54     87    114    161
D59V10, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                           1                            54
  CLUS_2                          75                            87
  CLUS_3                           2                           114
  CLUS_4                          21                           161
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED        6     55     27
  DEL PEAK 10(4Q22.1) WILD-TYPE    115    122     67
D59V11, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                           6                           115
  CLUS_2                          55                           122
  CLUS_3                          27                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(4Q22.1) MUTATED       50      6     32
  DEL PEAK 10(4Q22.1) WILD-TYPE    121    102     81
D59V12, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          50                           121
  CLUS_2                           6                           102
  CLUS_3                          32                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = DEL PEAK 11(4Q34.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q34.3) MUTATED        1      7      0      0
  DEL PEAK 11(4Q34.3) WILD-TYPE     13     10     12     10
D60V1, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           7                            10
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(4Q34.3) MUTATED        2      6      0      0      0
  DEL PEAK 11(4Q34.3) WILD-TYPE     12      3      7      7     16
D60V2, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           6                             3
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(4Q34.3) MUTATED        6     10    106      1      2
  DEL PEAK 11(4Q34.3) WILD-TYPE    299     38     48     11      3
D60V3, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                           6                           299
  CLUS_2                          10                            38
  CLUS_3                         106                            48
  CLUS_4                           1                            11
  CLUS_5                           2                             3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q34.3) MUTATED       76     22     11
  DEL PEAK 11(4Q34.3) WILD-TYPE     82     64    155
D60V4, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                          76                            82
  CLUS_2                          22                            64
  CLUS_3                          11                           155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(4Q34.3) MUTATED        6     10      2      1      3      5
  DEL PEAK 11(4Q34.3) WILD-TYPE     35     27     37     11     38     19
D60V5, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                           6                            35
  CLUS_2                          10                            27
  CLUS_3                           2                            37
  CLUS_4                           1                            11
  CLUS_5                           3                            38
  CLUS_6                           5                            19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q34.3) MUTATED       12      7      5      3
  DEL PEAK 11(4Q34.3) WILD-TYPE     55     60     38     14
D60V6, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                          12                            55
  CLUS_2                           7                            60
  CLUS_3                           5                            38
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q34.3) MUTATED      109      9      7
  DEL PEAK 11(4Q34.3) WILD-TYPE    115    141    138
D60V7, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                         109                           115
  CLUS_2                           9                           141
  CLUS_3                           7                           138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q34.3) MUTATED       91     27      7
  DEL PEAK 11(4Q34.3) WILD-TYPE     72    186    136
D60V8, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                          91                            72
  CLUS_2                          27                           186
  CLUS_3                           7                           136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q34.3) MUTATED       16     97      9
  DEL PEAK 11(4Q34.3) WILD-TYPE    125    122    146
D60V9, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                          16                           125
  CLUS_2                          97                           122
  CLUS_3                           9                           146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(4Q34.3) MUTATED        2     85      5     30
  DEL PEAK 11(4Q34.3) WILD-TYPE     53     77    111    152
D60V10, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                           2                            53
  CLUS_2                          85                            77
  CLUS_3                           5                           111
  CLUS_4                          30                           152
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q34.3) MUTATED       10     66     32
  DEL PEAK 11(4Q34.3) WILD-TYPE    111    111     62
D60V11, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                          10                           111
  CLUS_2                          66                           111
  CLUS_3                          32                            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(4Q34.3) MUTATED       61      9     38
  DEL PEAK 11(4Q34.3) WILD-TYPE    110     99     75
D60V12, multiclass
        clus
vv       DEL PEAK 11(4Q34.3) MUTATED DEL PEAK 11(4Q34.3) WILD-TYPE
  CLUS_1                          61                           110
  CLUS_2                           9                            99
  CLUS_3                          38                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = DEL PEAK 12(5Q11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(5Q11.2) MUTATED        1      6      0      0
  DEL PEAK 12(5Q11.2) WILD-TYPE     13     11     12     10
D61V1, multiclass
        clus
vv       DEL PEAK 12(5Q11.2) MUTATED DEL PEAK 12(5Q11.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           6                            11
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(5Q11.2) MUTATED        3      4      0      0      0
  DEL PEAK 12(5Q11.2) WILD-TYPE     11      5      7      7     16
D61V2, multiclass
        clus
vv       DEL PEAK 12(5Q11.2) MUTATED DEL PEAK 12(5Q11.2) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           4                             5
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(5Q11.2) MUTATED        0     12     92      1      1
  DEL PEAK 12(5Q11.2) WILD-TYPE    305     36     62     11      4
D61V3, multiclass
        clus
vv       DEL PEAK 12(5Q11.2) MUTATED DEL PEAK 12(5Q11.2) WILD-TYPE
  CLUS_1                           0                           305
  CLUS_2                          12                            36
  CLUS_3                          92                            62
  CLUS_4                           1                            11
  CLUS_5                           1                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q11.2) MUTATED       69     15      8
  DEL PEAK 12(5Q11.2) WILD-TYPE     89     71    158
D61V4, multiclass
        clus
vv       DEL PEAK 12(5Q11.2) MUTATED DEL PEAK 12(5Q11.2) WILD-TYPE
  CLUS_1                          69                            89
  CLUS_2                          15                            71
  CLUS_3                           8                           158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(5Q11.2) MUTATED        6      9      1      0      0      6
  DEL PEAK 12(5Q11.2) WILD-TYPE     35     28     38     12     41     18
D61V5, multiclass
        clus
vv       DEL PEAK 12(5Q11.2) MUTATED DEL PEAK 12(5Q11.2) WILD-TYPE
  CLUS_1                           6                            35
  CLUS_2                           9                            28
  CLUS_3                           1                            38
  CLUS_4                           0                            12
  CLUS_5                           0                            41
  CLUS_6                           6                            18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(5Q11.2) MUTATED       12      5      1      4
  DEL PEAK 12(5Q11.2) WILD-TYPE     55     62     42     13
D61V6, multiclass
        clus
vv       DEL PEAK 12(5Q11.2) MUTATED DEL PEAK 12(5Q11.2) WILD-TYPE
  CLUS_1                          12                            55
  CLUS_2                           5                            62
  CLUS_3                           1                            42
  CLUS_4                           4                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q11.2) MUTATED       91      5      9
  DEL PEAK 12(5Q11.2) WILD-TYPE    133    145    136
D61V7, multiclass
        clus
vv       DEL PEAK 12(5Q11.2) MUTATED DEL PEAK 12(5Q11.2) WILD-TYPE
  CLUS_1                          91                           133
  CLUS_2                           5                           145
  CLUS_3                           9                           136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q11.2) MUTATED       75     19     11
  DEL PEAK 12(5Q11.2) WILD-TYPE     88    194    132
D61V8, multiclass
        clus
vv       DEL PEAK 12(5Q11.2) MUTATED DEL PEAK 12(5Q11.2) WILD-TYPE
  CLUS_1                          75                            88
  CLUS_2                          19                           194
  CLUS_3                          11                           132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q11.2) MUTATED       10     84     11
  DEL PEAK 12(5Q11.2) WILD-TYPE    131    135    144
D61V9, multiclass
        clus
vv       DEL PEAK 12(5Q11.2) MUTATED DEL PEAK 12(5Q11.2) WILD-TYPE
  CLUS_1                          10                           131
  CLUS_2                          84                           135
  CLUS_3                          11                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(5Q11.2) MUTATED        1     71      6     27
  DEL PEAK 12(5Q11.2) WILD-TYPE     54     91    110    155
D61V10, multiclass
        clus
vv       DEL PEAK 12(5Q11.2) MUTATED DEL PEAK 12(5Q11.2) WILD-TYPE
  CLUS_1                           1                            54
  CLUS_2                          71                            91
  CLUS_3                           6                           110
  CLUS_4                          27                           155
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q11.2) MUTATED       11     61     19
  DEL PEAK 12(5Q11.2) WILD-TYPE    110    116     75
D61V11, multiclass
        clus
vv       DEL PEAK 12(5Q11.2) MUTATED DEL PEAK 12(5Q11.2) WILD-TYPE
  CLUS_1                          11                           110
  CLUS_2                          61                           116
  CLUS_3                          19                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(5Q11.2) MUTATED       56     11     24
  DEL PEAK 12(5Q11.2) WILD-TYPE    115     97     89
D61V12, multiclass
        clus
vv       DEL PEAK 12(5Q11.2) MUTATED DEL PEAK 12(5Q11.2) WILD-TYPE
  CLUS_1                          56                           115
  CLUS_2                          11                            97
  CLUS_3                          24                            89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = DEL PEAK 13(6Q26) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q26) MUTATED        1      3      0      0
  DEL PEAK 13(6Q26) WILD-TYPE     13     14     12     10
D62V1, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         1                          13
  CLUS_2                         3                          14
  CLUS_3                         0                          12
  CLUS_4                         0                          10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(6Q26) MUTATED        1      3      0      0      0
  DEL PEAK 13(6Q26) WILD-TYPE     13      6      7      7     16
D62V2, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         1                          13
  CLUS_2                         3                           6
  CLUS_3                         0                           7
  CLUS_4                         0                           7
  CLUS_5                         0                          16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(6Q26) MUTATED        4      4     37      0      0
  DEL PEAK 13(6Q26) WILD-TYPE    301     44    117     12      5
D62V3, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         4                         301
  CLUS_2                         4                          44
  CLUS_3                        37                         117
  CLUS_4                         0                          12
  CLUS_5                         0                           5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED       30      8      1
  DEL PEAK 13(6Q26) WILD-TYPE    128     78    165
D62V4, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        30                         128
  CLUS_2                         8                          78
  CLUS_3                         1                         165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(6Q26) MUTATED        2      3      1      0      1      2
  DEL PEAK 13(6Q26) WILD-TYPE     39     34     38     12     40     22
D62V5, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         2                          39
  CLUS_2                         3                          34
  CLUS_3                         1                          38
  CLUS_4                         0                          12
  CLUS_5                         1                          40
  CLUS_6                         2                          22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q26) MUTATED        5      1      1      2
  DEL PEAK 13(6Q26) WILD-TYPE     62     66     42     15
D62V6, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         5                          62
  CLUS_2                         1                          66
  CLUS_3                         1                          42
  CLUS_4                         2                          15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED       41      2      2
  DEL PEAK 13(6Q26) WILD-TYPE    183    148    143
D62V7, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        41                         183
  CLUS_2                         2                         148
  CLUS_3                         2                         143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED       37      7      1
  DEL PEAK 13(6Q26) WILD-TYPE    126    206    142
D62V8, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        37                         126
  CLUS_2                         7                         206
  CLUS_3                         1                         142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED        6     35      3
  DEL PEAK 13(6Q26) WILD-TYPE    135    184    152
D62V9, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         6                         135
  CLUS_2                        35                         184
  CLUS_3                         3                         152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(6Q26) MUTATED        0     34      1      9
  DEL PEAK 13(6Q26) WILD-TYPE     55    128    115    173
D62V10, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         0                          55
  CLUS_2                        34                         128
  CLUS_3                         1                         115
  CLUS_4                         9                         173
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED        3     23     13
  DEL PEAK 13(6Q26) WILD-TYPE    118    154     81
D62V11, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                         3                         118
  CLUS_2                        23                         154
  CLUS_3                        13                          81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(6Q26) MUTATED       23      2     14
  DEL PEAK 13(6Q26) WILD-TYPE    148    106     99
D62V12, multiclass
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  CLUS_1                        23                         148
  CLUS_2                         2                         106
  CLUS_3                        14                          99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = DEL PEAK 14(7P22.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(7P22.3) MUTATED        0      7      0      0
  DEL PEAK 14(7P22.3) WILD-TYPE     14     10     12     10
D63V1, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           7                            10
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(7P22.3) MUTATED        3      4      0      0      0
  DEL PEAK 14(7P22.3) WILD-TYPE     11      5      7      7     16
D63V2, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           4                             5
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(7P22.3) MUTATED        4      2     63      0      1
  DEL PEAK 14(7P22.3) WILD-TYPE    301     46     91     12      4
D63V3, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           4                           301
  CLUS_2                           2                            46
  CLUS_3                          63                            91
  CLUS_4                           0                            12
  CLUS_5                           1                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7P22.3) MUTATED       43     14      4
  DEL PEAK 14(7P22.3) WILD-TYPE    115     72    162
D63V4, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                          43                           115
  CLUS_2                          14                            72
  CLUS_3                           4                           162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(7P22.3) MUTATED        5      5      0      1      0      4
  DEL PEAK 14(7P22.3) WILD-TYPE     36     32     39     11     41     20
D63V5, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           5                            36
  CLUS_2                           5                            32
  CLUS_3                           0                            39
  CLUS_4                           1                            11
  CLUS_5                           0                            41
  CLUS_6                           4                            20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(7P22.3) MUTATED        8      2      1      4
  DEL PEAK 14(7P22.3) WILD-TYPE     59     65     42     13
D63V6, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           8                            59
  CLUS_2                           2                            65
  CLUS_3                           1                            42
  CLUS_4                           4                            13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7P22.3) MUTATED       64      2      4
  DEL PEAK 14(7P22.3) WILD-TYPE    160    148    141
D63V7, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                          64                           160
  CLUS_2                           2                           148
  CLUS_3                           4                           141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7P22.3) MUTATED       58      8      4
  DEL PEAK 14(7P22.3) WILD-TYPE    105    205    139
D63V8, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                          58                           105
  CLUS_2                           8                           205
  CLUS_3                           4                           139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7P22.3) MUTATED        5     58      6
  DEL PEAK 14(7P22.3) WILD-TYPE    136    161    149
D63V9, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           5                           136
  CLUS_2                          58                           161
  CLUS_3                           6                           149
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(7P22.3) MUTATED        0     52      3     14
  DEL PEAK 14(7P22.3) WILD-TYPE     55    110    113    168
D63V10, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           0                            55
  CLUS_2                          52                           110
  CLUS_3                           3                           113
  CLUS_4                          14                           168
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7P22.3) MUTATED        5     36     17
  DEL PEAK 14(7P22.3) WILD-TYPE    116    141     77
D63V11, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                           5                           116
  CLUS_2                          36                           141
  CLUS_3                          17                            77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(7P22.3) MUTATED       35      5     18
  DEL PEAK 14(7P22.3) WILD-TYPE    136    103     95
D63V12, multiclass
        clus
vv       DEL PEAK 14(7P22.3) MUTATED DEL PEAK 14(7P22.3) WILD-TYPE
  CLUS_1                          35                           136
  CLUS_2                           5                           103
  CLUS_3                          18                            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = DEL PEAK 15(7Q11.22) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(7Q11.22) MUTATED        0      2      0      0
  DEL PEAK 15(7Q11.22) WILD-TYPE     14     15     12     10
D64V1, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 15(7Q11.22) MUTATED"
clus
  DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A052                     TCGA-AP-A053 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A054                     TCGA-AP-A056 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05A                     TCGA-AP-A05D 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05J                     TCGA-AP-A05N 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05P                     TCGA-AP-A0L8 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0L9                     TCGA-AP-A0LD 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LG                     TCGA-AP-A0LH 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LJ                     TCGA-AP-A0LN 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LT                     TCGA-AP-A0LV 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05S                     TCGA-AX-A05T 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05U                     TCGA-AX-A05W 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05Y                     TCGA-AX-A05Z 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A060                     TCGA-AX-A062 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A063                     TCGA-AX-A064 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A06B                     TCGA-AX-A06F 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A06J                     TCGA-AX-A0IW 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A0J1                     TCGA-B5-A0JR 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-B5-A0JZ                     TCGA-B5-A0K0 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-B5-A0K1                     TCGA-B5-A0K4 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-BG-A0LW                     TCGA-BG-A0MI 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-BK-A0C9 
"DEL PEAK 15(7Q11.22) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(7Q11.22) MUTATED        1      1      0      0      0
  DEL PEAK 15(7Q11.22) WILD-TYPE     13      8      7      7     16
D64V2, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 15(7Q11.22) MUTATED"
clus
  DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A052                     TCGA-AP-A053 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A054                     TCGA-AP-A056 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05A                     TCGA-AP-A05D 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05J                     TCGA-AP-A05N 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05P                     TCGA-AP-A0L8 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0L9                     TCGA-AP-A0LD 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LG                     TCGA-AP-A0LH 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LJ                     TCGA-AP-A0LN 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LT                     TCGA-AP-A0LV 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05S                     TCGA-AX-A05T 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05U                     TCGA-AX-A05W 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05Y                     TCGA-AX-A05Z 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A060                     TCGA-AX-A062 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A063                     TCGA-AX-A064 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A06B                     TCGA-AX-A06F 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A06J                     TCGA-AX-A0IW 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A0J1                     TCGA-B5-A0JR 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-B5-A0JZ                     TCGA-B5-A0K0 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-B5-A0K1                     TCGA-B5-A0K4 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-BG-A0LW                     TCGA-BG-A0MI 
"DEL PEAK 15(7Q11.22) WILD-TYPE" "DEL PEAK 15(7Q11.22) WILD-TYPE" 
                    TCGA-BK-A0C9 
"DEL PEAK 15(7Q11.22) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(7Q11.22) MUTATED        0      0     40      0      1
  DEL PEAK 15(7Q11.22) WILD-TYPE    305     48    114     12      4
D64V3, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                            0                            305
  CLUS_2                            0                             48
  CLUS_3                           40                            114
  CLUS_4                            0                             12
  CLUS_5                            1                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(7Q11.22) MUTATED       27      8      3
  DEL PEAK 15(7Q11.22) WILD-TYPE    131     78    163
D64V4, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                           27                            131
  CLUS_2                            8                             78
  CLUS_3                            3                            163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(7Q11.22) MUTATED        5      3      0      0      0      2
  DEL PEAK 15(7Q11.22) WILD-TYPE     36     34     39     12     41     22
D64V5, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                            5                             36
  CLUS_2                            3                             34
  CLUS_3                            0                             39
  CLUS_4                            0                             12
  CLUS_5                            0                             41
  CLUS_6                            2                             22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(7Q11.22) MUTATED        7      1      0      2
  DEL PEAK 15(7Q11.22) WILD-TYPE     60     66     43     15
D64V6, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                            7                             60
  CLUS_2                            1                             66
  CLUS_3                            0                             43
  CLUS_4                            2                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(7Q11.22) MUTATED       39      0      2
  DEL PEAK 15(7Q11.22) WILD-TYPE    185    150    143
D64V7, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                           39                            185
  CLUS_2                            0                            150
  CLUS_3                            2                            143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(7Q11.22) MUTATED       31      7      3
  DEL PEAK 15(7Q11.22) WILD-TYPE    132    206    140
D64V8, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                           31                            132
  CLUS_2                            7                            206
  CLUS_3                            3                            140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(7Q11.22) MUTATED        3     33      4
  DEL PEAK 15(7Q11.22) WILD-TYPE    138    186    151
D64V9, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                            3                            138
  CLUS_2                           33                            186
  CLUS_3                            4                            151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(7Q11.22) MUTATED        0     31      3      6
  DEL PEAK 15(7Q11.22) WILD-TYPE     55    131    113    176
D64V10, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                            0                             55
  CLUS_2                           31                            131
  CLUS_3                            3                            113
  CLUS_4                            6                            176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(7Q11.22) MUTATED        3     24      9
  DEL PEAK 15(7Q11.22) WILD-TYPE    118    153     85
D64V11, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                            3                            118
  CLUS_2                           24                            153
  CLUS_3                            9                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(7Q11.22) MUTATED       22      5      9
  DEL PEAK 15(7Q11.22) WILD-TYPE    149    103    104
D64V12, multiclass
        clus
vv       DEL PEAK 15(7Q11.22) MUTATED DEL PEAK 15(7Q11.22) WILD-TYPE
  CLUS_1                           22                            149
  CLUS_2                            5                            103
  CLUS_3                            9                            104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = DEL PEAK 16(7Q31.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(7Q31.1) MUTATED        0      3      0      0
  DEL PEAK 16(7Q31.1) WILD-TYPE     14     14     12     10
D65V1, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           3                            14
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(7Q31.1) MUTATED        1      2      0      0      0
  DEL PEAK 16(7Q31.1) WILD-TYPE     13      7      7      7     16
D65V2, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           2                             7
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(7Q31.1) MUTATED        0      0     52      0      1
  DEL PEAK 16(7Q31.1) WILD-TYPE    305     48    102     12      4
D65V3, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                           0                           305
  CLUS_2                           0                            48
  CLUS_3                          52                           102
  CLUS_4                           0                            12
  CLUS_5                           1                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(7Q31.1) MUTATED       36     11      1
  DEL PEAK 16(7Q31.1) WILD-TYPE    122     75    165
D65V4, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                          36                           122
  CLUS_2                          11                            75
  CLUS_3                           1                           165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(7Q31.1) MUTATED        4      5      1      0      0      3
  DEL PEAK 16(7Q31.1) WILD-TYPE     37     32     38     12     41     21
D65V5, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                           4                            37
  CLUS_2                           5                            32
  CLUS_3                           1                            38
  CLUS_4                           0                            12
  CLUS_5                           0                            41
  CLUS_6                           3                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(7Q31.1) MUTATED        9      2      0      2
  DEL PEAK 16(7Q31.1) WILD-TYPE     58     65     43     15
D65V6, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                           9                            58
  CLUS_2                           2                            65
  CLUS_3                           0                            43
  CLUS_4                           2                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(7Q31.1) MUTATED       52      0      1
  DEL PEAK 16(7Q31.1) WILD-TYPE    172    150    144
D65V7, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                          52                           172
  CLUS_2                           0                           150
  CLUS_3                           1                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(7Q31.1) MUTATED       46      5      2
  DEL PEAK 16(7Q31.1) WILD-TYPE    117    208    141
D65V8, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                          46                           117
  CLUS_2                           5                           208
  CLUS_3                           2                           141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(7Q31.1) MUTATED        2     46      4
  DEL PEAK 16(7Q31.1) WILD-TYPE    139    173    151
D65V9, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                           2                           139
  CLUS_2                          46                           173
  CLUS_3                           4                           151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(7Q31.1) MUTATED        0     44      3      5
  DEL PEAK 16(7Q31.1) WILD-TYPE     55    118    113    177
D65V10, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                           0                            55
  CLUS_2                          44                           118
  CLUS_3                           3                           113
  CLUS_4                           5                           177
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(7Q31.1) MUTATED        4     29     12
  DEL PEAK 16(7Q31.1) WILD-TYPE    117    148     82
D65V11, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                           4                           117
  CLUS_2                          29                           148
  CLUS_3                          12                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(7Q31.1) MUTATED       26      5     14
  DEL PEAK 16(7Q31.1) WILD-TYPE    145    103     99
D65V12, multiclass
        clus
vv       DEL PEAK 16(7Q31.1) MUTATED DEL PEAK 16(7Q31.1) WILD-TYPE
  CLUS_1                          26                           145
  CLUS_2                           5                           103
  CLUS_3                          14                            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = DEL PEAK 17(7Q36.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(7Q36.1) MUTATED        1      4      1      0
  DEL PEAK 17(7Q36.1) WILD-TYPE     13     13     11     10
D66V1, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           4                            13
  CLUS_3                           1                            11
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(7Q36.1) MUTATED        2      3      1      0      0
  DEL PEAK 17(7Q36.1) WILD-TYPE     12      6      6      7     16
D66V2, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           3                             6
  CLUS_3                           1                             6
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(7Q36.1) MUTATED        1      1     59      0      1
  DEL PEAK 17(7Q36.1) WILD-TYPE    304     47     95     12      4
D66V3, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                           1                           304
  CLUS_2                           1                            47
  CLUS_3                          59                            95
  CLUS_4                           0                            12
  CLUS_5                           1                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q36.1) MUTATED       40     12      1
  DEL PEAK 17(7Q36.1) WILD-TYPE    118     74    165
D66V4, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                          40                           118
  CLUS_2                          12                            74
  CLUS_3                           1                           165
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 17(7Q36.1) MUTATED        5      7      1      0      0      3
  DEL PEAK 17(7Q36.1) WILD-TYPE     36     30     38     12     41     21
D66V5, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                           5                            36
  CLUS_2                           7                            30
  CLUS_3                           1                            38
  CLUS_4                           0                            12
  CLUS_5                           0                            41
  CLUS_6                           3                            21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(7Q36.1) MUTATED       12      3      0      1
  DEL PEAK 17(7Q36.1) WILD-TYPE     55     64     43     16
D66V6, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                          12                            55
  CLUS_2                           3                            64
  CLUS_3                           0                            43
  CLUS_4                           1                            16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q36.1) MUTATED       61      0      1
  DEL PEAK 17(7Q36.1) WILD-TYPE    163    150    144
D66V7, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                          61                           163
  CLUS_2                           0                           150
  CLUS_3                           1                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q36.1) MUTATED       56      4      2
  DEL PEAK 17(7Q36.1) WILD-TYPE    107    209    141
D66V8, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                          56                           107
  CLUS_2                           4                           209
  CLUS_3                           2                           141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q36.1) MUTATED        2     55      4
  DEL PEAK 17(7Q36.1) WILD-TYPE    139    164    151
D66V9, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                           2                           139
  CLUS_2                          55                           164
  CLUS_3                           4                           151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 17(7Q36.1) MUTATED        0     52      3      6
  DEL PEAK 17(7Q36.1) WILD-TYPE     55    110    113    176
D66V10, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                           0                            55
  CLUS_2                          52                           110
  CLUS_3                           3                           113
  CLUS_4                           6                           176
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q36.1) MUTATED        4     33     13
  DEL PEAK 17(7Q36.1) WILD-TYPE    117    144     81
D66V11, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                           4                           117
  CLUS_2                          33                           144
  CLUS_3                          13                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(7Q36.1) MUTATED       32      4     14
  DEL PEAK 17(7Q36.1) WILD-TYPE    139    104     99
D66V12, multiclass
        clus
vv       DEL PEAK 17(7Q36.1) MUTATED DEL PEAK 17(7Q36.1) WILD-TYPE
  CLUS_1                          32                           139
  CLUS_2                           4                           104
  CLUS_3                          14                            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = DEL PEAK 18(8P23.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(8P23.2) MUTATED        0      6      0      0
  DEL PEAK 18(8P23.2) WILD-TYPE     14     11     12     10
D67V1, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           6                            11
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(8P23.2) MUTATED        0      6      0      0      0
  DEL PEAK 18(8P23.2) WILD-TYPE     14      3      7      7     16
D67V2, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           6                             3
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(8P23.2) MUTATED        8      7     97      0      1
  DEL PEAK 18(8P23.2) WILD-TYPE    297     41     57     12      4
D67V3, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           8                           297
  CLUS_2                           7                            41
  CLUS_3                          97                            57
  CLUS_4                           0                            12
  CLUS_5                           1                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED       78     16      5
  DEL PEAK 18(8P23.2) WILD-TYPE     80     70    161
D67V4, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          78                            80
  CLUS_2                          16                            70
  CLUS_3                           5                           161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 18(8P23.2) MUTATED        7      4      4      1      1      7
  DEL PEAK 18(8P23.2) WILD-TYPE     34     33     35     11     40     17
D67V5, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           7                            34
  CLUS_2                           4                            33
  CLUS_3                           4                            35
  CLUS_4                           1                            11
  CLUS_5                           1                            40
  CLUS_6                           7                            17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(8P23.2) MUTATED       12      5      2      5
  DEL PEAK 18(8P23.2) WILD-TYPE     55     62     41     12
D67V6, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          12                            55
  CLUS_2                           5                            62
  CLUS_3                           2                            41
  CLUS_4                           5                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED      102      6      4
  DEL PEAK 18(8P23.2) WILD-TYPE    122    144    141
D67V7, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                         102                           122
  CLUS_2                           6                           144
  CLUS_3                           4                           141
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED       90     16      6
  DEL PEAK 18(8P23.2) WILD-TYPE     73    197    137
D67V8, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          90                            73
  CLUS_2                          16                           197
  CLUS_3                           6                           137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED        4     99      7
  DEL PEAK 18(8P23.2) WILD-TYPE    137    120    148
D67V9, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           4                           137
  CLUS_2                          99                           120
  CLUS_3                           7                           148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 18(8P23.2) MUTATED        2     87      4     17
  DEL PEAK 18(8P23.2) WILD-TYPE     53     75    112    165
D67V10, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           2                            53
  CLUS_2                          87                            75
  CLUS_3                           4                           112
  CLUS_4                          17                           165
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED        5     65     24
  DEL PEAK 18(8P23.2) WILD-TYPE    116    112     70
D67V11, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                           5                           116
  CLUS_2                          65                           112
  CLUS_3                          24                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(8P23.2) MUTATED       57      5     32
  DEL PEAK 18(8P23.2) WILD-TYPE    114    103     81
D67V12, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          57                           114
  CLUS_2                           5                           103
  CLUS_3                          32                            81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = DEL PEAK 19(8P21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P21.2) MUTATED        0      6      0      0
  DEL PEAK 19(8P21.2) WILD-TYPE     14     11     12     10
D68V1, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           6                            11
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(8P21.2) MUTATED        0      6      0      0      0
  DEL PEAK 19(8P21.2) WILD-TYPE     14      3      7      7     16
D68V2, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           6                             3
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 19(8P21.2) MUTATED        5      5    100      0      1
  DEL PEAK 19(8P21.2) WILD-TYPE    300     43     54     12      4
D68V3, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                           5                           300
  CLUS_2                           5                            43
  CLUS_3                         100                            54
  CLUS_4                           0                            12
  CLUS_5                           1                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P21.2) MUTATED       80     15      2
  DEL PEAK 19(8P21.2) WILD-TYPE     78     71    164
D68V4, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                          80                            78
  CLUS_2                          15                            71
  CLUS_3                           2                           164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 19(8P21.2) MUTATED        7      5      3      0      1      7
  DEL PEAK 19(8P21.2) WILD-TYPE     34     32     36     12     40     17
D68V5, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                           7                            34
  CLUS_2                           5                            32
  CLUS_3                           3                            36
  CLUS_4                           0                            12
  CLUS_5                           1                            40
  CLUS_6                           7                            17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P21.2) MUTATED       13      4      1      5
  DEL PEAK 19(8P21.2) WILD-TYPE     54     63     42     12
D68V6, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                          13                            54
  CLUS_2                           4                            63
  CLUS_3                           1                            42
  CLUS_4                           5                            12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P21.2) MUTATED      104      5      1
  DEL PEAK 19(8P21.2) WILD-TYPE    120    145    144
D68V7, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                         104                           120
  CLUS_2                           5                           145
  CLUS_3                           1                           144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P21.2) MUTATED       93     14      3
  DEL PEAK 19(8P21.2) WILD-TYPE     70    199    140
D68V8, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                          93                            70
  CLUS_2                          14                           199
  CLUS_3                           3                           140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P21.2) MUTATED        4    101      3
  DEL PEAK 19(8P21.2) WILD-TYPE    137    118    152
D68V9, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                           4                           137
  CLUS_2                         101                           118
  CLUS_3                           3                           152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 19(8P21.2) MUTATED        2     90      1     15
  DEL PEAK 19(8P21.2) WILD-TYPE     53     72    115    167
D68V10, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                           2                            53
  CLUS_2                          90                            72
  CLUS_3                           1                           115
  CLUS_4                          15                           167
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P21.2) MUTATED        2     66     25
  DEL PEAK 19(8P21.2) WILD-TYPE    119    111     69
D68V11, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                           2                           119
  CLUS_2                          66                           111
  CLUS_3                          25                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 19(8P21.2) MUTATED       60      3     30
  DEL PEAK 19(8P21.2) WILD-TYPE    111    105     83
D68V12, multiclass
        clus
vv       DEL PEAK 19(8P21.2) MUTATED DEL PEAK 19(8P21.2) WILD-TYPE
  CLUS_1                          60                           111
  CLUS_2                           3                           105
  CLUS_3                          30                            83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = DEL PEAK 20(9P23) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(9P23) MUTATED        1      3      0      0
  DEL PEAK 20(9P23) WILD-TYPE     13     14     12     10
D69V1, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                         1                          13
  CLUS_2                         3                          14
  CLUS_3                         0                          12
  CLUS_4                         0                          10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(9P23) MUTATED        1      3      0      0      0
  DEL PEAK 20(9P23) WILD-TYPE     13      6      7      7     16
D69V2, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                         1                          13
  CLUS_2                         3                           6
  CLUS_3                         0                           7
  CLUS_4                         0                           7
  CLUS_5                         0                          16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 20(9P23) MUTATED        2     13     59      0      1
  DEL PEAK 20(9P23) WILD-TYPE    303     35     95     12      4
D69V3, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                         2                         303
  CLUS_2                        13                          35
  CLUS_3                        59                          95
  CLUS_4                         0                          12
  CLUS_5                         1                           4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9P23) MUTATED       40     18      8
  DEL PEAK 20(9P23) WILD-TYPE    118     68    158
D69V4, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        40                         118
  CLUS_2                        18                          68
  CLUS_3                         8                         158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 20(9P23) MUTATED        4      5      1      1      0      5
  DEL PEAK 20(9P23) WILD-TYPE     37     32     38     11     41     19
D69V5, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                         4                          37
  CLUS_2                         5                          32
  CLUS_3                         1                          38
  CLUS_4                         1                          11
  CLUS_5                         0                          41
  CLUS_6                         5                          19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(9P23) MUTATED        6      5      2      3
  DEL PEAK 20(9P23) WILD-TYPE     61     62     41     14
D69V6, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                         6                          61
  CLUS_2                         5                          62
  CLUS_3                         2                          41
  CLUS_4                         3                          14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9P23) MUTATED       59      5     11
  DEL PEAK 20(9P23) WILD-TYPE    165    145    134
D69V7, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        59                         165
  CLUS_2                         5                         145
  CLUS_3                        11                         134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9P23) MUTATED       51     13     11
  DEL PEAK 20(9P23) WILD-TYPE    112    200    132
D69V8, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        51                         112
  CLUS_2                        13                         200
  CLUS_3                        11                         132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9P23) MUTATED        6     53     15
  DEL PEAK 20(9P23) WILD-TYPE    135    166    140
D69V9, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                         6                         135
  CLUS_2                        53                         166
  CLUS_3                        15                         140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 20(9P23) MUTATED        1     48     10     15
  DEL PEAK 20(9P23) WILD-TYPE     54    114    106    167
D69V10, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                         1                          54
  CLUS_2                        48                         114
  CLUS_3                        10                         106
  CLUS_4                        15                         167
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9P23) MUTATED       12     38     15
  DEL PEAK 20(9P23) WILD-TYPE    109    139     79
D69V11, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        12                         109
  CLUS_2                        38                         139
  CLUS_3                        15                          79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 20(9P23) MUTATED       35     12     18
  DEL PEAK 20(9P23) WILD-TYPE    136     96     95
D69V12, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        35                         136
  CLUS_2                        12                          96
  CLUS_3                        18                          95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = DEL PEAK 21(9Q21.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(9Q21.2) MUTATED        0      9      0      0
  DEL PEAK 21(9Q21.2) WILD-TYPE     14      8     12     10
D70V1, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           9                             8
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(9Q21.2) MUTATED        2      7      0      0      0
  DEL PEAK 21(9Q21.2) WILD-TYPE     12      2      7      7     16
D70V2, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           7                             2
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 21(9Q21.2) MUTATED        3     19    100      0      1
  DEL PEAK 21(9Q21.2) WILD-TYPE    302     29     54     12      4
D70V3, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                           3                           302
  CLUS_2                          19                            29
  CLUS_3                         100                            54
  CLUS_4                           0                            12
  CLUS_5                           1                             4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(9Q21.2) MUTATED       72     20     15
  DEL PEAK 21(9Q21.2) WILD-TYPE     86     66    151
D70V4, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                          72                            86
  CLUS_2                          20                            66
  CLUS_3                          15                           151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 21(9Q21.2) MUTATED        6     12      1      2      1      6
  DEL PEAK 21(9Q21.2) WILD-TYPE     35     25     38     10     40     18
D70V5, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                           6                            35
  CLUS_2                          12                            25
  CLUS_3                           1                            38
  CLUS_4                           2                            10
  CLUS_5                           1                            40
  CLUS_6                           6                            18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(9Q21.2) MUTATED       12      8      5      3
  DEL PEAK 21(9Q21.2) WILD-TYPE     55     59     38     14
D70V6, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                          12                            55
  CLUS_2                           8                            59
  CLUS_3                           5                            38
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(9Q21.2) MUTATED       99      8     16
  DEL PEAK 21(9Q21.2) WILD-TYPE    125    142    129
D70V7, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                          99                           125
  CLUS_2                           8                           142
  CLUS_3                          16                           129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(9Q21.2) MUTATED       86     21     16
  DEL PEAK 21(9Q21.2) WILD-TYPE     77    192    127
D70V8, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                          86                            77
  CLUS_2                          21                           192
  CLUS_3                          16                           127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(9Q21.2) MUTATED       11     91     18
  DEL PEAK 21(9Q21.2) WILD-TYPE    130    128    137
D70V9, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                          11                           130
  CLUS_2                          91                           128
  CLUS_3                          18                           137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 21(9Q21.2) MUTATED        2     80     12     26
  DEL PEAK 21(9Q21.2) WILD-TYPE     53     82    104    156
D70V10, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                           2                            53
  CLUS_2                          80                            82
  CLUS_3                          12                           104
  CLUS_4                          26                           156
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(9Q21.2) MUTATED       18     59     28
  DEL PEAK 21(9Q21.2) WILD-TYPE    103    118     66
D70V11, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                          18                           103
  CLUS_2                          59                           118
  CLUS_3                          28                            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 21(9Q21.2) MUTATED       56     18     31
  DEL PEAK 21(9Q21.2) WILD-TYPE    115     90     82
D70V12, multiclass
        clus
vv       DEL PEAK 21(9Q21.2) MUTATED DEL PEAK 21(9Q21.2) WILD-TYPE
  CLUS_1                          56                           115
  CLUS_2                          18                            90
  CLUS_3                          31                            82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(71) Variable = DEL PEAK 22(9Q34.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9Q34.2) MUTATED        0      9      0      0
  DEL PEAK 22(9Q34.2) WILD-TYPE     14      8     12     10
D71V1, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           9                             8
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(9Q34.2) MUTATED        2      7      0      0      0
  DEL PEAK 22(9Q34.2) WILD-TYPE     12      2      7      7     16
D71V2, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           7                             2
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 22(9Q34.2) MUTATED        4     19    105      0      0
  DEL PEAK 22(9Q34.2) WILD-TYPE    301     29     49     12      5
D71V3, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                           4                           301
  CLUS_2                          19                            29
  CLUS_3                         105                            49
  CLUS_4                           0                            12
  CLUS_5                           0                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9Q34.2) MUTATED       74     23     13
  DEL PEAK 22(9Q34.2) WILD-TYPE     84     63    153
D71V4, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                          74                            84
  CLUS_2                          23                            63
  CLUS_3                          13                           153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 22(9Q34.2) MUTATED        7     13      2      2      1      6
  DEL PEAK 22(9Q34.2) WILD-TYPE     34     24     37     10     40     18
D71V5, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                           7                            34
  CLUS_2                          13                            24
  CLUS_3                           2                            37
  CLUS_4                           2                            10
  CLUS_5                           1                            40
  CLUS_6                           6                            18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9Q34.2) MUTATED       15      8      5      3
  DEL PEAK 22(9Q34.2) WILD-TYPE     52     59     38     14
D71V6, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                          15                            52
  CLUS_2                           8                            59
  CLUS_3                           5                            38
  CLUS_4                           3                            14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9Q34.2) MUTATED      102      9     16
  DEL PEAK 22(9Q34.2) WILD-TYPE    122    141    129
D71V7, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                         102                           122
  CLUS_2                           9                           141
  CLUS_3                          16                           129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9Q34.2) MUTATED       86     24     17
  DEL PEAK 22(9Q34.2) WILD-TYPE     77    189    126
D71V8, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                          86                            77
  CLUS_2                          24                           189
  CLUS_3                          17                           126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9Q34.2) MUTATED       11     95     19
  DEL PEAK 22(9Q34.2) WILD-TYPE    130    124    136
D71V9, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                          11                           130
  CLUS_2                          95                           124
  CLUS_3                          19                           136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 22(9Q34.2) MUTATED        2     80     12     31
  DEL PEAK 22(9Q34.2) WILD-TYPE     53     82    104    151
D71V10, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                           2                            53
  CLUS_2                          80                            82
  CLUS_3                          12                           104
  CLUS_4                          31                           151
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9Q34.2) MUTATED       17     64     27
  DEL PEAK 22(9Q34.2) WILD-TYPE    104    113     67
D71V11, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                          17                           104
  CLUS_2                          64                           113
  CLUS_3                          27                            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 22(9Q34.2) MUTATED       62     18     28
  DEL PEAK 22(9Q34.2) WILD-TYPE    109     90     85
D71V12, multiclass
        clus
vv       DEL PEAK 22(9Q34.2) MUTATED DEL PEAK 22(9Q34.2) WILD-TYPE
  CLUS_1                          62                           109
  CLUS_2                          18                            90
  CLUS_3                          28                            85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(72) Variable = DEL PEAK 23(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10Q23.31) MUTATED        0      3      0      0
  DEL PEAK 23(10Q23.31) WILD-TYPE     14     14     12     10
D72V1, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                             0                              14
  CLUS_2                             3                              14
  CLUS_3                             0                              12
  CLUS_4                             0                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(10Q23.31) MUTATED        1      2      0      0      0
  DEL PEAK 23(10Q23.31) WILD-TYPE     13      7      7      7     16
D72V2, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                             1                              13
  CLUS_2                             2                               7
  CLUS_3                             0                               7
  CLUS_4                             0                               7
  CLUS_5                             0                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 23(10Q23.31) MUTATED        5      4     64      0      0
  DEL PEAK 23(10Q23.31) WILD-TYPE    300     44     90     12      5
D72V3, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                             5                             300
  CLUS_2                             4                              44
  CLUS_3                            64                              90
  CLUS_4                             0                              12
  CLUS_5                             0                               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q23.31) MUTATED       45     13      6
  DEL PEAK 23(10Q23.31) WILD-TYPE    113     73    160
D72V4, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                            45                             113
  CLUS_2                            13                              73
  CLUS_3                             6                             160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 23(10Q23.31) MUTATED        4      7      3      1      0      2
  DEL PEAK 23(10Q23.31) WILD-TYPE     37     30     36     11     41     22
D72V5, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                             4                              37
  CLUS_2                             7                              30
  CLUS_3                             3                              36
  CLUS_4                             1                              11
  CLUS_5                             0                              41
  CLUS_6                             2                              22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10Q23.31) MUTATED        6      6      4      1
  DEL PEAK 23(10Q23.31) WILD-TYPE     61     61     39     16
D72V6, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                             6                              61
  CLUS_2                             6                              61
  CLUS_3                             4                              39
  CLUS_4                             1                              16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q23.31) MUTATED       60      5      7
  DEL PEAK 23(10Q23.31) WILD-TYPE    164    145    138
D72V7, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                            60                             164
  CLUS_2                             5                             145
  CLUS_3                             7                             138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q23.31) MUTATED       49     15      8
  DEL PEAK 23(10Q23.31) WILD-TYPE    114    198    135
D72V8, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                            49                             114
  CLUS_2                            15                             198
  CLUS_3                             8                             135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q23.31) MUTATED        7     57      8
  DEL PEAK 23(10Q23.31) WILD-TYPE    134    162    147
D72V9, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                             7                             134
  CLUS_2                            57                             162
  CLUS_3                             8                             147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 23(10Q23.31) MUTATED        1     45      7     19
  DEL PEAK 23(10Q23.31) WILD-TYPE     54    117    109    163
D72V10, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                             1                              54
  CLUS_2                            45                             117
  CLUS_3                             7                             109
  CLUS_4                            19                             163
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q23.31) MUTATED        7     40     16
  DEL PEAK 23(10Q23.31) WILD-TYPE    114    137     78
D72V11, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                             7                             114
  CLUS_2                            40                             137
  CLUS_3                            16                              78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 23(10Q23.31) MUTATED       37      8     18
  DEL PEAK 23(10Q23.31) WILD-TYPE    134    100     95
D72V12, multiclass
        clus
vv       DEL PEAK 23(10Q23.31) MUTATED DEL PEAK 23(10Q23.31) WILD-TYPE
  CLUS_1                            37                             134
  CLUS_2                             8                             100
  CLUS_3                            18                              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(73) Variable = DEL PEAK 24(11P15.5) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(11P15.5) MUTATED        1      3      0      0
  DEL PEAK 24(11P15.5) WILD-TYPE     13     14     12     10
D73V1, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                             14
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(11P15.5) MUTATED        2      2      0      0      0
  DEL PEAK 24(11P15.5) WILD-TYPE     12      7      7      7     16
D73V2, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            2                              7
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 24(11P15.5) MUTATED        1     13     83      0      2
  DEL PEAK 24(11P15.5) WILD-TYPE    304     35     71     12      3
D73V3, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                            1                            304
  CLUS_2                           13                             35
  CLUS_3                           83                             71
  CLUS_4                            0                             12
  CLUS_5                            2                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11P15.5) MUTATED       66     18      6
  DEL PEAK 24(11P15.5) WILD-TYPE     92     68    160
D73V4, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                           66                             92
  CLUS_2                           18                             68
  CLUS_3                            6                            160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 24(11P15.5) MUTATED        4      6      2      0      2      4
  DEL PEAK 24(11P15.5) WILD-TYPE     37     31     37     12     39     20
D73V5, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                            4                             37
  CLUS_2                            6                             31
  CLUS_3                            2                             37
  CLUS_4                            0                             12
  CLUS_5                            2                             39
  CLUS_6                            4                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(11P15.5) MUTATED        9      2      4      3
  DEL PEAK 24(11P15.5) WILD-TYPE     58     65     39     14
D73V6, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                            9                             58
  CLUS_2                            2                             65
  CLUS_3                            4                             39
  CLUS_4                            3                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11P15.5) MUTATED       83      4     11
  DEL PEAK 24(11P15.5) WILD-TYPE    141    146    134
D73V7, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                           83                            141
  CLUS_2                            4                            146
  CLUS_3                           11                            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11P15.5) MUTATED       70     16     12
  DEL PEAK 24(11P15.5) WILD-TYPE     93    197    131
D73V8, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                           70                             93
  CLUS_2                           16                            197
  CLUS_3                           12                            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11P15.5) MUTATED        8     77     13
  DEL PEAK 24(11P15.5) WILD-TYPE    133    142    142
D73V9, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                            8                            133
  CLUS_2                           77                            142
  CLUS_3                           13                            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 24(11P15.5) MUTATED        1     67     10     20
  DEL PEAK 24(11P15.5) WILD-TYPE     54     95    106    162
D73V10, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                            1                             54
  CLUS_2                           67                             95
  CLUS_3                           10                            106
  CLUS_4                           20                            162
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11P15.5) MUTATED       13     61     17
  DEL PEAK 24(11P15.5) WILD-TYPE    108    116     77
D73V11, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                           13                            108
  CLUS_2                           61                            116
  CLUS_3                           17                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 24(11P15.5) MUTATED       57     14     20
  DEL PEAK 24(11P15.5) WILD-TYPE    114     94     93
D73V12, multiclass
        clus
vv       DEL PEAK 24(11P15.5) MUTATED DEL PEAK 24(11P15.5) WILD-TYPE
  CLUS_1                           57                            114
  CLUS_2                           14                             94
  CLUS_3                           20                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(74) Variable = DEL PEAK 25(11Q14.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(11Q14.1) MUTATED        0      1      0      0
  DEL PEAK 25(11Q14.1) WILD-TYPE     14     16     12     10
D74V1, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 25(11Q14.1) MUTATED"
clus
  DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE 
                             1                             52 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A052                     TCGA-AP-A053 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A054                     TCGA-AP-A056 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05A                     TCGA-AP-A05D 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05H                     TCGA-AP-A05J 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05N                     TCGA-AP-A05P 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0L8                     TCGA-AP-A0L9 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LD                     TCGA-AP-A0LG 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LH                     TCGA-AP-A0LJ 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LN                     TCGA-AP-A0LT 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LV                     TCGA-AX-A05S 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05T                     TCGA-AX-A05U 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05W                     TCGA-AX-A05Y 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05Z                     TCGA-AX-A060 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A062                     TCGA-AX-A063 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A064                     TCGA-AX-A06B 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A06F                     TCGA-AX-A06J 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A0IW                     TCGA-AX-A0J1 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0JR                     TCGA-B5-A0JZ 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0K0                     TCGA-B5-A0K1 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0K4                     TCGA-BG-A0LW 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-BG-A0MI                     TCGA-BK-A0C9 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(11Q14.1) MUTATED        1      0      0      0      0
  DEL PEAK 25(11Q14.1) WILD-TYPE     13      9      7      7     16
D74V2, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 25(11Q14.1) MUTATED"
clus
  DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE 
                             1                             52 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A052                     TCGA-AP-A053 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A054                     TCGA-AP-A056 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05A                     TCGA-AP-A05D 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05H                     TCGA-AP-A05J 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05N                     TCGA-AP-A05P 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0L8                     TCGA-AP-A0L9 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LD                     TCGA-AP-A0LG 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LH                     TCGA-AP-A0LJ 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LN                     TCGA-AP-A0LT 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LV                     TCGA-AX-A05S 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05T                     TCGA-AX-A05U 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05W                     TCGA-AX-A05Y 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05Z                     TCGA-AX-A060 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A062                     TCGA-AX-A063 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A064                     TCGA-AX-A06B 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A06F                     TCGA-AX-A06J 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A0IW                     TCGA-AX-A0J1 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0JR                     TCGA-B5-A0JZ 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0K0                     TCGA-B5-A0K1 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0K4                     TCGA-BG-A0LW 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                    TCGA-BG-A0MI                     TCGA-BK-A0C9 
"DEL PEAK 25(11Q14.1) WILD-TYPE" "DEL PEAK 25(11Q14.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 25(11Q14.1) MUTATED        1     12     51      0      2
  DEL PEAK 25(11Q14.1) WILD-TYPE    304     36    103     12      3
D74V3, multiclass
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                            1                            304
  CLUS_2                           12                             36
  CLUS_3                           51                            103
  CLUS_4                            0                             12
  CLUS_5                            2                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11Q14.1) MUTATED       47     10      5
  DEL PEAK 25(11Q14.1) WILD-TYPE    111     76    161
D74V4, multiclass
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                           47                            111
  CLUS_2                           10                             76
  CLUS_3                            5                            161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 25(11Q14.1) MUTATED        3      4      2      0      1      3
  DEL PEAK 25(11Q14.1) WILD-TYPE     38     33     37     12     40     21
D74V5, multiclass
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                            3                             38
  CLUS_2                            4                             33
  CLUS_3                            2                             37
  CLUS_4                            0                             12
  CLUS_5                            1                             40
  CLUS_6                            3                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(11Q14.1) MUTATED        7      3      2      1
  DEL PEAK 25(11Q14.1) WILD-TYPE     60     64     41     16
D74V6, multiclass
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                            7                             60
  CLUS_2                            3                             64
  CLUS_3                            2                             41
  CLUS_4                            1                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11Q14.1) MUTATED       56      2      7
  DEL PEAK 25(11Q14.1) WILD-TYPE    168    148    138
D74V7, multiclass
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                           56                            168
  CLUS_2                            2                            148
  CLUS_3                            7                            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11Q14.1) MUTATED       51      8      6
  DEL PEAK 25(11Q14.1) WILD-TYPE    112    205    137
D74V8, multiclass
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                           51                            112
  CLUS_2                            8                            205
  CLUS_3                            6                            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11Q14.1) MUTATED        5     52      9
  DEL PEAK 25(11Q14.1) WILD-TYPE    136    167    146
D74V9, multiclass
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                            5                            136
  CLUS_2                           52                            167
  CLUS_3                            9                            146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 25(11Q14.1) MUTATED        0     49      5     12
  DEL PEAK 25(11Q14.1) WILD-TYPE     55    113    111    170
D74V10, multiclass
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                            0                             55
  CLUS_2                           49                            113
  CLUS_3                            5                            111
  CLUS_4                           12                            170
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11Q14.1) MUTATED        8     42     12
  DEL PEAK 25(11Q14.1) WILD-TYPE    113    135     82
D74V11, multiclass
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                            8                            113
  CLUS_2                           42                            135
  CLUS_3                           12                             82
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 25(11Q14.1) MUTATED       40      7     15
  DEL PEAK 25(11Q14.1) WILD-TYPE    131    101     98
D74V12, multiclass
        clus
vv       DEL PEAK 25(11Q14.1) MUTATED DEL PEAK 25(11Q14.1) WILD-TYPE
  CLUS_1                           40                            131
  CLUS_2                            7                            101
  CLUS_3                           15                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(75) Variable = DEL PEAK 26(11Q25) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11Q25) MUTATED        0      2      0      0
  DEL PEAK 26(11Q25) WILD-TYPE     14     15     12     10
D75V1, multiclass
[1] "Remove cluster labels:"     "DEL PEAK 26(11Q25) MUTATED"
clus
  DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE 
                           2                           51 
                  TCGA-A5-A0G2                   TCGA-A5-A0G5 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GA                   TCGA-A5-A0GB 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GE                   TCGA-A5-A0GH 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GM                   TCGA-A5-A0GP 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GU                   TCGA-AP-A051 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A053                   TCGA-AP-A054 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A056                   TCGA-AP-A05A 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A05H                   TCGA-AP-A05J 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A05N                   TCGA-AP-A05P 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0L8                   TCGA-AP-A0L9 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LD                   TCGA-AP-A0LG 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LH                   TCGA-AP-A0LJ 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LN                   TCGA-AP-A0LT 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LV                   TCGA-AX-A05S 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A05T                   TCGA-AX-A05U 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A05W                   TCGA-AX-A05Y 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A05Z                   TCGA-AX-A060 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A062                   TCGA-AX-A063 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A064                   TCGA-AX-A06B 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A06F                   TCGA-AX-A06J 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A0IW                   TCGA-AX-A0J1 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-B5-A0JR                   TCGA-B5-A0JZ 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-B5-A0K0                   TCGA-B5-A0K1 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-B5-A0K4                   TCGA-BG-A0LW 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-BG-A0MI                   TCGA-BK-A0C9 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-BK-A0CC 
"DEL PEAK 26(11Q25) WILD-TYPE" 
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(11Q25) MUTATED        0      2      0      0      0
  DEL PEAK 26(11Q25) WILD-TYPE     14      7      7      7     16
D75V2, multiclass
[1] "Remove cluster labels:"     "DEL PEAK 26(11Q25) MUTATED"
clus
  DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE 
                           2                           51 
                  TCGA-A5-A0G2                   TCGA-A5-A0G5 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GA                   TCGA-A5-A0GB 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GE                   TCGA-A5-A0GH 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GM                   TCGA-A5-A0GP 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GU                   TCGA-AP-A051 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A053                   TCGA-AP-A054 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A056                   TCGA-AP-A05A 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A05H                   TCGA-AP-A05J 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A05N                   TCGA-AP-A05P 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0L8                   TCGA-AP-A0L9 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LD                   TCGA-AP-A0LG 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LH                   TCGA-AP-A0LJ 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LN                   TCGA-AP-A0LT 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LV                   TCGA-AX-A05S 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A05T                   TCGA-AX-A05U 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A05W                   TCGA-AX-A05Y 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A05Z                   TCGA-AX-A060 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A062                   TCGA-AX-A063 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A064                   TCGA-AX-A06B 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A06F                   TCGA-AX-A06J 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-AX-A0IW                   TCGA-AX-A0J1 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-B5-A0JR                   TCGA-B5-A0JZ 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-B5-A0K0                   TCGA-B5-A0K1 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-B5-A0K4                   TCGA-BG-A0LW 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-BG-A0MI                   TCGA-BK-A0C9 
"DEL PEAK 26(11Q25) WILD-TYPE" "DEL PEAK 26(11Q25) WILD-TYPE" 
                  TCGA-BK-A0CC 
"DEL PEAK 26(11Q25) WILD-TYPE" 
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 26(11Q25) MUTATED        4     16     67      0      2
  DEL PEAK 26(11Q25) WILD-TYPE    301     32     87     12      3
D75V3, multiclass
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                          4                          301
  CLUS_2                         16                           32
  CLUS_3                         67                           87
  CLUS_4                          0                           12
  CLUS_5                          2                            3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q25) MUTATED       62     11      7
  DEL PEAK 26(11Q25) WILD-TYPE     96     75    159
D75V4, multiclass
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                         62                           96
  CLUS_2                         11                           75
  CLUS_3                          7                          159
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 26(11Q25) MUTATED        2      7      4      1      1      4
  DEL PEAK 26(11Q25) WILD-TYPE     39     30     35     11     40     20
D75V5, multiclass
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                          2                           39
  CLUS_2                          7                           30
  CLUS_3                          4                           35
  CLUS_4                          1                           11
  CLUS_5                          1                           40
  CLUS_6                          4                           20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11Q25) MUTATED        7      7      4      1
  DEL PEAK 26(11Q25) WILD-TYPE     60     60     39     16
D75V6, multiclass
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                          7                           60
  CLUS_2                          7                           60
  CLUS_3                          4                           39
  CLUS_4                          1                           16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q25) MUTATED       72      7      9
  DEL PEAK 26(11Q25) WILD-TYPE    152    143    136
D75V7, multiclass
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                         72                          152
  CLUS_2                          7                          143
  CLUS_3                          9                          136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q25) MUTATED       62     17      9
  DEL PEAK 26(11Q25) WILD-TYPE    101    196    134
D75V8, multiclass
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                         62                          101
  CLUS_2                         17                          196
  CLUS_3                          9                          134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q25) MUTATED       10     65     12
  DEL PEAK 26(11Q25) WILD-TYPE    131    154    143
D75V9, multiclass
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                         10                          131
  CLUS_2                         65                          154
  CLUS_3                         12                          143
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 26(11Q25) MUTATED        1     59      7     20
  DEL PEAK 26(11Q25) WILD-TYPE     54    103    109    162
D75V10, multiclass
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                          1                           54
  CLUS_2                         59                          103
  CLUS_3                          7                          109
  CLUS_4                         20                          162
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q25) MUTATED       10     52     18
  DEL PEAK 26(11Q25) WILD-TYPE    111    125     76
D75V11, multiclass
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                         10                          111
  CLUS_2                         52                          125
  CLUS_3                         18                           76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 26(11Q25) MUTATED       49      9     22
  DEL PEAK 26(11Q25) WILD-TYPE    122     99     91
D75V12, multiclass
        clus
vv       DEL PEAK 26(11Q25) MUTATED DEL PEAK 26(11Q25) WILD-TYPE
  CLUS_1                         49                          122
  CLUS_2                          9                           99
  CLUS_3                         22                           91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(76) Variable = DEL PEAK 27(12Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(12Q23.1) MUTATED        0      2      0      0
  DEL PEAK 27(12Q23.1) WILD-TYPE     14     15     12     10
D76V1, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 27(12Q23.1) MUTATED"
clus
  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A053                     TCGA-AP-A054 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A056                     TCGA-AP-A05A 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A05D                     TCGA-AP-A05J 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A05N                     TCGA-AP-A05P 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0L8                     TCGA-AP-A0L9 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LD                     TCGA-AP-A0LG 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LH                     TCGA-AP-A0LJ 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LN                     TCGA-AP-A0LT 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LV                     TCGA-AX-A05S 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05T                     TCGA-AX-A05U 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05W                     TCGA-AX-A05Y 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05Z                     TCGA-AX-A060 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A062                     TCGA-AX-A063 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A064                     TCGA-AX-A06B 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A06F                     TCGA-AX-A06J 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A0IW                     TCGA-AX-A0J1 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0JR                     TCGA-B5-A0JZ 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0K0                     TCGA-B5-A0K1 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0K4                     TCGA-BG-A0LW 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-BG-A0MI                     TCGA-BK-A0C9 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-BK-A0CC 
"DEL PEAK 27(12Q23.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(12Q23.1) MUTATED        0      2      0      0      0
  DEL PEAK 27(12Q23.1) WILD-TYPE     14      7      7      7     16
D76V2, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 27(12Q23.1) MUTATED"
clus
  DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A053                     TCGA-AP-A054 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A056                     TCGA-AP-A05A 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A05D                     TCGA-AP-A05J 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A05N                     TCGA-AP-A05P 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0L8                     TCGA-AP-A0L9 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LD                     TCGA-AP-A0LG 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LH                     TCGA-AP-A0LJ 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LN                     TCGA-AP-A0LT 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LV                     TCGA-AX-A05S 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05T                     TCGA-AX-A05U 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05W                     TCGA-AX-A05Y 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05Z                     TCGA-AX-A060 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A062                     TCGA-AX-A063 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A064                     TCGA-AX-A06B 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A06F                     TCGA-AX-A06J 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A0IW                     TCGA-AX-A0J1 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0JR                     TCGA-B5-A0JZ 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0K0                     TCGA-B5-A0K1 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0K4                     TCGA-BG-A0LW 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-BG-A0MI                     TCGA-BK-A0C9 
"DEL PEAK 27(12Q23.1) WILD-TYPE" "DEL PEAK 27(12Q23.1) WILD-TYPE" 
                    TCGA-BK-A0CC 
"DEL PEAK 27(12Q23.1) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 27(12Q23.1) MUTATED        0      3     49      1      0
  DEL PEAK 27(12Q23.1) WILD-TYPE    305     45    105     11      5
D76V3, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                            0                            305
  CLUS_2                            3                             45
  CLUS_3                           49                            105
  CLUS_4                            1                             11
  CLUS_5                            0                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q23.1) MUTATED       39      6      0
  DEL PEAK 27(12Q23.1) WILD-TYPE    119     80    166
D76V4, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           39                            119
  CLUS_2                            6                             80
  CLUS_3                            0                            166
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 27(12Q23.1) MUTATED        3      7      2      0      0      2
  DEL PEAK 27(12Q23.1) WILD-TYPE     38     30     37     12     41     22
D76V5, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                            3                             38
  CLUS_2                            7                             30
  CLUS_3                            2                             37
  CLUS_4                            0                             12
  CLUS_5                            0                             41
  CLUS_6                            2                             22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(12Q23.1) MUTATED        9      3      0      2
  DEL PEAK 27(12Q23.1) WILD-TYPE     58     64     43     15
D76V6, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                            9                             58
  CLUS_2                            3                             64
  CLUS_3                            0                             43
  CLUS_4                            2                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q23.1) MUTATED       48      2      3
  DEL PEAK 27(12Q23.1) WILD-TYPE    176    148    142
D76V7, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           48                            176
  CLUS_2                            2                            148
  CLUS_3                            3                            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q23.1) MUTATED       45      3      5
  DEL PEAK 27(12Q23.1) WILD-TYPE    118    210    138
D76V8, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           45                            118
  CLUS_2                            3                            210
  CLUS_3                            5                            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q23.1) MUTATED        5     43      3
  DEL PEAK 27(12Q23.1) WILD-TYPE    136    176    152
D76V9, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                            5                            136
  CLUS_2                           43                            176
  CLUS_3                            3                            152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 27(12Q23.1) MUTATED        0     44      0      7
  DEL PEAK 27(12Q23.1) WILD-TYPE     55    118    116    175
D76V10, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                            0                             55
  CLUS_2                           44                            118
  CLUS_3                            0                            116
  CLUS_4                            7                            175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q23.1) MUTATED        2     30     13
  DEL PEAK 27(12Q23.1) WILD-TYPE    119    147     81
D76V11, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                            2                            119
  CLUS_2                           30                            147
  CLUS_3                           13                             81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 27(12Q23.1) MUTATED       28      2     15
  DEL PEAK 27(12Q23.1) WILD-TYPE    143    106     98
D76V12, multiclass
        clus
vv       DEL PEAK 27(12Q23.1) MUTATED DEL PEAK 27(12Q23.1) WILD-TYPE
  CLUS_1                           28                            143
  CLUS_2                            2                            106
  CLUS_3                           15                             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(77) Variable = DEL PEAK 28(12Q24.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12Q24.33) MUTATED        0      2      0      0
  DEL PEAK 28(12Q24.33) WILD-TYPE     14     15     12     10
D77V1, multiclass
[1] "Remove cluster labels:"        "DEL PEAK 28(12Q24.33) MUTATED"
clus
  DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE 
                              2                              51 
                     TCGA-A5-A0G2                      TCGA-A5-A0G5 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GA                      TCGA-A5-A0GB 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GE                      TCGA-A5-A0GH 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GM                      TCGA-A5-A0GP 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GU                      TCGA-AP-A051 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A053                      TCGA-AP-A054 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A056                      TCGA-AP-A05A 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A05D                      TCGA-AP-A05J 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A05N                      TCGA-AP-A05P 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0L8                      TCGA-AP-A0L9 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LD                      TCGA-AP-A0LG 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LH                      TCGA-AP-A0LJ 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LN                      TCGA-AP-A0LT 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LV                      TCGA-AX-A05S 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05T                      TCGA-AX-A05U 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05W                      TCGA-AX-A05Y 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05Z                      TCGA-AX-A060 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A062                      TCGA-AX-A063 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A064                      TCGA-AX-A06B 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A06F                      TCGA-AX-A06J 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A0IW                      TCGA-AX-A0J1 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0JR                      TCGA-B5-A0JZ 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0K0                      TCGA-B5-A0K1 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0K4                      TCGA-BG-A0LW 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-BG-A0MI                      TCGA-BK-A0C9 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-BK-A0CC 
"DEL PEAK 28(12Q24.33) WILD-TYPE" 
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(12Q24.33) MUTATED        0      2      0      0      0
  DEL PEAK 28(12Q24.33) WILD-TYPE     14      7      7      7     16
D77V2, multiclass
[1] "Remove cluster labels:"        "DEL PEAK 28(12Q24.33) MUTATED"
clus
  DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE 
                              2                              51 
                     TCGA-A5-A0G2                      TCGA-A5-A0G5 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GA                      TCGA-A5-A0GB 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GE                      TCGA-A5-A0GH 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GM                      TCGA-A5-A0GP 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GU                      TCGA-AP-A051 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A053                      TCGA-AP-A054 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A056                      TCGA-AP-A05A 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A05D                      TCGA-AP-A05J 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A05N                      TCGA-AP-A05P 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0L8                      TCGA-AP-A0L9 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LD                      TCGA-AP-A0LG 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LH                      TCGA-AP-A0LJ 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LN                      TCGA-AP-A0LT 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LV                      TCGA-AX-A05S 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05T                      TCGA-AX-A05U 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05W                      TCGA-AX-A05Y 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05Z                      TCGA-AX-A060 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A062                      TCGA-AX-A063 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A064                      TCGA-AX-A06B 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A06F                      TCGA-AX-A06J 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A0IW                      TCGA-AX-A0J1 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0JR                      TCGA-B5-A0JZ 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0K0                      TCGA-B5-A0K1 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0K4                      TCGA-BG-A0LW 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-BG-A0MI                      TCGA-BK-A0C9 
"DEL PEAK 28(12Q24.33) WILD-TYPE" "DEL PEAK 28(12Q24.33) WILD-TYPE" 
                     TCGA-BK-A0CC 
"DEL PEAK 28(12Q24.33) WILD-TYPE" 
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 28(12Q24.33) MUTATED        1      3     59      1      0
  DEL PEAK 28(12Q24.33) WILD-TYPE    304     45     95     11      5
D77V3, multiclass
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                             1                             304
  CLUS_2                             3                              45
  CLUS_3                            59                              95
  CLUS_4                             1                              11
  CLUS_5                             0                               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q24.33) MUTATED       46      9      3
  DEL PEAK 28(12Q24.33) WILD-TYPE    112     77    163
D77V4, multiclass
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                            46                             112
  CLUS_2                             9                              77
  CLUS_3                             3                             163
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 28(12Q24.33) MUTATED        1      5      1      0      0      2
  DEL PEAK 28(12Q24.33) WILD-TYPE     40     32     38     12     41     22
D77V5, multiclass
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                             1                              40
  CLUS_2                             5                              32
  CLUS_3                             1                              38
  CLUS_4                             0                              12
  CLUS_5                             0                              41
  CLUS_6                             2                              22
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12Q24.33) MUTATED        5      2      0      2
  DEL PEAK 28(12Q24.33) WILD-TYPE     62     65     43     15
D77V6, multiclass
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                             5                              62
  CLUS_2                             2                              65
  CLUS_3                             0                              43
  CLUS_4                             2                              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q24.33) MUTATED       60      1      3
  DEL PEAK 28(12Q24.33) WILD-TYPE    164    149    142
D77V7, multiclass
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                            60                             164
  CLUS_2                             1                             149
  CLUS_3                             3                             142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q24.33) MUTATED       51     10      3
  DEL PEAK 28(12Q24.33) WILD-TYPE    112    203    140
D77V8, multiclass
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                            51                             112
  CLUS_2                            10                             203
  CLUS_3                             3                             140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q24.33) MUTATED        5     54      3
  DEL PEAK 28(12Q24.33) WILD-TYPE    136    165    152
D77V9, multiclass
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                             5                             136
  CLUS_2                            54                             165
  CLUS_3                             3                             152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 28(12Q24.33) MUTATED        0     48      2     12
  DEL PEAK 28(12Q24.33) WILD-TYPE     55    114    114    170
D77V10, multiclass
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                             0                              55
  CLUS_2                            48                             114
  CLUS_3                             2                             114
  CLUS_4                            12                             170
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q24.33) MUTATED        4     43     11
  DEL PEAK 28(12Q24.33) WILD-TYPE    117    134     83
D77V11, multiclass
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                             4                             117
  CLUS_2                            43                             134
  CLUS_3                            11                              83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 28(12Q24.33) MUTATED       40      4     14
  DEL PEAK 28(12Q24.33) WILD-TYPE    131    104     99
D77V12, multiclass
        clus
vv       DEL PEAK 28(12Q24.33) MUTATED DEL PEAK 28(12Q24.33) WILD-TYPE
  CLUS_1                            40                             131
  CLUS_2                             4                             104
  CLUS_3                            14                              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(78) Variable = DEL PEAK 29(13Q11) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(13Q11) MUTATED        1      4      1      0
  DEL PEAK 29(13Q11) WILD-TYPE     13     13     11     10
D78V1, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                          1                           13
  CLUS_2                          4                           13
  CLUS_3                          1                           11
  CLUS_4                          0                           10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(13Q11) MUTATED        3      3      0      0      0
  DEL PEAK 29(13Q11) WILD-TYPE     11      6      7      7     16
D78V2, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                          3                           11
  CLUS_2                          3                            6
  CLUS_3                          0                            7
  CLUS_4                          0                            7
  CLUS_5                          0                           16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 29(13Q11) MUTATED        2     19     73      1      1
  DEL PEAK 29(13Q11) WILD-TYPE    303     29     81     11      4
D78V3, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                          2                          303
  CLUS_2                         19                           29
  CLUS_3                         73                           81
  CLUS_4                          1                           11
  CLUS_5                          1                            4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q11) MUTATED       55     17     10
  DEL PEAK 29(13Q11) WILD-TYPE    103     69    156
D78V4, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                         55                          103
  CLUS_2                         17                           69
  CLUS_3                         10                          156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 29(13Q11) MUTATED        4      7      1      0      3      3
  DEL PEAK 29(13Q11) WILD-TYPE     37     30     38     12     38     21
D78V5, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                          4                           37
  CLUS_2                          7                           30
  CLUS_3                          1                           38
  CLUS_4                          0                           12
  CLUS_5                          3                           38
  CLUS_6                          3                           21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(13Q11) MUTATED        8      5      4      1
  DEL PEAK 29(13Q11) WILD-TYPE     59     62     39     16
D78V6, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                          8                           59
  CLUS_2                          5                           62
  CLUS_3                          4                           39
  CLUS_4                          1                           16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q11) MUTATED       74      7     15
  DEL PEAK 29(13Q11) WILD-TYPE    150    143    130
D78V7, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                         74                          150
  CLUS_2                          7                          143
  CLUS_3                         15                          130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q11) MUTATED       60     21     15
  DEL PEAK 29(13Q11) WILD-TYPE    103    192    128
D78V8, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                         60                          103
  CLUS_2                         21                          192
  CLUS_3                         15                          128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q11) MUTATED       13     69     13
  DEL PEAK 29(13Q11) WILD-TYPE    128    150    142
D78V9, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                         13                          128
  CLUS_2                         69                          150
  CLUS_3                         13                          142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 29(13Q11) MUTATED        1     61      8     25
  DEL PEAK 29(13Q11) WILD-TYPE     54    101    108    157
D78V10, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                          1                           54
  CLUS_2                         61                          101
  CLUS_3                          8                          108
  CLUS_4                         25                          157
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q11) MUTATED       15     45     23
  DEL PEAK 29(13Q11) WILD-TYPE    106    132     71
D78V11, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                         15                          106
  CLUS_2                         45                          132
  CLUS_3                         23                           71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 29(13Q11) MUTATED       40     15     28
  DEL PEAK 29(13Q11) WILD-TYPE    131     93     85
D78V12, multiclass
        clus
vv       DEL PEAK 29(13Q11) MUTATED DEL PEAK 29(13Q11) WILD-TYPE
  CLUS_1                         40                          131
  CLUS_2                         15                           93
  CLUS_3                         28                           85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(79) Variable = DEL PEAK 30(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(13Q14.2) MUTATED        1      3      1      0
  DEL PEAK 30(13Q14.2) WILD-TYPE     13     14     11     10
D79V1, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                             14
  CLUS_3                            1                             11
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(13Q14.2) MUTATED        4      1      0      0      0
  DEL PEAK 30(13Q14.2) WILD-TYPE     10      8      7      7     16
D79V2, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            1                              8
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 30(13Q14.2) MUTATED        3     21     77      1      1
  DEL PEAK 30(13Q14.2) WILD-TYPE    302     27     77     11      4
D79V3, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                            3                            302
  CLUS_2                           21                             27
  CLUS_3                           77                             77
  CLUS_4                            1                             11
  CLUS_5                            1                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED       57     20     13
  DEL PEAK 30(13Q14.2) WILD-TYPE    101     66    153
D79V4, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           57                            101
  CLUS_2                           20                             66
  CLUS_3                           13                            153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 30(13Q14.2) MUTATED        5      9      1      1      3      3
  DEL PEAK 30(13Q14.2) WILD-TYPE     36     28     38     11     38     21
D79V5, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                            5                             36
  CLUS_2                            9                             28
  CLUS_3                            1                             38
  CLUS_4                            1                             11
  CLUS_5                            3                             38
  CLUS_6                            3                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(13Q14.2) MUTATED       10      6      5      1
  DEL PEAK 30(13Q14.2) WILD-TYPE     57     61     38     16
D79V6, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           10                             57
  CLUS_2                            6                             61
  CLUS_3                            5                             38
  CLUS_4                            1                             16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED       77      8     18
  DEL PEAK 30(13Q14.2) WILD-TYPE    147    142    127
D79V7, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           77                            147
  CLUS_2                            8                            142
  CLUS_3                           18                            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED       59     26     18
  DEL PEAK 30(13Q14.2) WILD-TYPE    104    187    125
D79V8, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           59                            104
  CLUS_2                           26                            187
  CLUS_3                           18                            125
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED       16     69     17
  DEL PEAK 30(13Q14.2) WILD-TYPE    125    150    138
D79V9, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           16                            125
  CLUS_2                           69                            150
  CLUS_3                           17                            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 30(13Q14.2) MUTATED        1     59     11     31
  DEL PEAK 30(13Q14.2) WILD-TYPE     54    103    105    151
D79V10, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                            1                             54
  CLUS_2                           59                            103
  CLUS_3                           11                            105
  CLUS_4                           31                            151
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED       20     50     21
  DEL PEAK 30(13Q14.2) WILD-TYPE    101    127     73
D79V11, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           20                            101
  CLUS_2                           50                            127
  CLUS_3                           21                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 30(13Q14.2) MUTATED       48     18     25
  DEL PEAK 30(13Q14.2) WILD-TYPE    123     90     88
D79V12, multiclass
        clus
vv       DEL PEAK 30(13Q14.2) MUTATED DEL PEAK 30(13Q14.2) WILD-TYPE
  CLUS_1                           48                            123
  CLUS_2                           18                             90
  CLUS_3                           25                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(80) Variable = DEL PEAK 31(14Q13.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(14Q13.1) MUTATED        0      5      0      0
  DEL PEAK 31(14Q13.1) WILD-TYPE     14     12     12     10
D80V1, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            5                             12
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(14Q13.1) MUTATED        1      4      0      0      0
  DEL PEAK 31(14Q13.1) WILD-TYPE     13      5      7      7     16
D80V2, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            4                              5
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 31(14Q13.1) MUTATED        2      6     58      1      2
  DEL PEAK 31(14Q13.1) WILD-TYPE    303     42     96     11      3
D80V3, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                            2                            303
  CLUS_2                            6                             42
  CLUS_3                           58                             96
  CLUS_4                            1                             11
  CLUS_5                            2                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q13.1) MUTATED       47      8      5
  DEL PEAK 31(14Q13.1) WILD-TYPE    111     78    161
D80V4, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                           47                            111
  CLUS_2                            8                             78
  CLUS_3                            5                            161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 31(14Q13.1) MUTATED        2      5      0      0      1      3
  DEL PEAK 31(14Q13.1) WILD-TYPE     39     32     39     12     40     21
D80V5, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                            2                             39
  CLUS_2                            5                             32
  CLUS_3                            0                             39
  CLUS_4                            0                             12
  CLUS_5                            1                             40
  CLUS_6                            3                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(14Q13.1) MUTATED        4      3      1      3
  DEL PEAK 31(14Q13.1) WILD-TYPE     63     64     42     14
D80V6, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                            4                             63
  CLUS_2                            3                             64
  CLUS_3                            1                             42
  CLUS_4                            3                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q13.1) MUTATED       58      4      6
  DEL PEAK 31(14Q13.1) WILD-TYPE    166    146    139
D80V7, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                           58                            166
  CLUS_2                            4                            146
  CLUS_3                            6                            139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q13.1) MUTATED       51     11      6
  DEL PEAK 31(14Q13.1) WILD-TYPE    112    202    137
D80V8, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                           51                            112
  CLUS_2                           11                            202
  CLUS_3                            6                            137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q13.1) MUTATED       10     53      5
  DEL PEAK 31(14Q13.1) WILD-TYPE    131    166    150
D80V9, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                           10                            131
  CLUS_2                           53                            166
  CLUS_3                            5                            150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 31(14Q13.1) MUTATED        0     48      3     17
  DEL PEAK 31(14Q13.1) WILD-TYPE     55    114    113    165
D80V10, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                            0                             55
  CLUS_2                           48                            114
  CLUS_3                            3                            113
  CLUS_4                           17                            165
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q13.1) MUTATED        6     41     15
  DEL PEAK 31(14Q13.1) WILD-TYPE    115    136     79
D80V11, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                            6                            115
  CLUS_2                           41                            136
  CLUS_3                           15                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 31(14Q13.1) MUTATED       39      6     17
  DEL PEAK 31(14Q13.1) WILD-TYPE    132    102     96
D80V12, multiclass
        clus
vv       DEL PEAK 31(14Q13.1) MUTATED DEL PEAK 31(14Q13.1) WILD-TYPE
  CLUS_1                           39                            132
  CLUS_2                            6                            102
  CLUS_3                           17                             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(81) Variable = DEL PEAK 32(15Q15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(15Q15.1) MUTATED        1      6      0      0
  DEL PEAK 32(15Q15.1) WILD-TYPE     13     11     12     10
D81V1, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            6                             11
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(15Q15.1) MUTATED        1      5      0      1      0
  DEL PEAK 32(15Q15.1) WILD-TYPE     13      4      7      6     16
D81V2, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            5                              4
  CLUS_3                            0                              7
  CLUS_4                            1                              6
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 32(15Q15.1) MUTATED        5     18    110      0      2
  DEL PEAK 32(15Q15.1) WILD-TYPE    300     30     44     12      3
D81V3, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                            5                            300
  CLUS_2                           18                             30
  CLUS_3                          110                             44
  CLUS_4                            0                             12
  CLUS_5                            2                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q15.1) MUTATED       84     23     12
  DEL PEAK 32(15Q15.1) WILD-TYPE     74     63    154
D81V4, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                           84                             74
  CLUS_2                           23                             63
  CLUS_3                           12                            154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 32(15Q15.1) MUTATED        4     12      2      2      2      6
  DEL PEAK 32(15Q15.1) WILD-TYPE     37     25     37     10     39     18
D81V5, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                            4                             37
  CLUS_2                           12                             25
  CLUS_3                            2                             37
  CLUS_4                            2                             10
  CLUS_5                            2                             39
  CLUS_6                            6                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(15Q15.1) MUTATED       12      6      6      4
  DEL PEAK 32(15Q15.1) WILD-TYPE     55     61     37     13
D81V6, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                           12                             55
  CLUS_2                            6                             61
  CLUS_3                            6                             37
  CLUS_4                            4                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q15.1) MUTATED      114     10     11
  DEL PEAK 32(15Q15.1) WILD-TYPE    110    140    134
D81V7, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                          114                            110
  CLUS_2                           10                            140
  CLUS_3                           11                            134
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q15.1) MUTATED       94     29     12
  DEL PEAK 32(15Q15.1) WILD-TYPE     69    184    131
D81V8, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                           94                             69
  CLUS_2                           29                            184
  CLUS_3                           12                            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q15.1) MUTATED       14    106     13
  DEL PEAK 32(15Q15.1) WILD-TYPE    127    113    142
D81V9, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                           14                            127
  CLUS_2                          106                            113
  CLUS_3                           13                            142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 32(15Q15.1) MUTATED        2     90      8     33
  DEL PEAK 32(15Q15.1) WILD-TYPE     53     72    108    149
D81V10, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                            2                             53
  CLUS_2                           90                             72
  CLUS_3                            8                            108
  CLUS_4                           33                            149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q15.1) MUTATED       14     70     32
  DEL PEAK 32(15Q15.1) WILD-TYPE    107    107     62
D81V11, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                           14                            107
  CLUS_2                           70                            107
  CLUS_3                           32                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 32(15Q15.1) MUTATED       68     14     34
  DEL PEAK 32(15Q15.1) WILD-TYPE    103     94     79
D81V12, multiclass
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  CLUS_1                           68                            103
  CLUS_2                           14                             94
  CLUS_3                           34                             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(82) Variable = DEL PEAK 33(15Q23) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q23) MUTATED        0      6      0      0
  DEL PEAK 33(15Q23) WILD-TYPE     14     11     12     10
D82V1, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                          0                           14
  CLUS_2                          6                           11
  CLUS_3                          0                           12
  CLUS_4                          0                           10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(15Q23) MUTATED        1      5      0      0      0
  DEL PEAK 33(15Q23) WILD-TYPE     13      4      7      7     16
D82V2, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                          1                           13
  CLUS_2                          5                            4
  CLUS_3                          0                            7
  CLUS_4                          0                            7
  CLUS_5                          0                           16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 33(15Q23) MUTATED        4     15     88      0      3
  DEL PEAK 33(15Q23) WILD-TYPE    301     33     66     12      2
D82V3, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                          4                          301
  CLUS_2                         15                           33
  CLUS_3                         88                           66
  CLUS_4                          0                           12
  CLUS_5                          3                            2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q23) MUTATED       72     16      8
  DEL PEAK 33(15Q23) WILD-TYPE     86     70    158
D82V4, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                         72                           86
  CLUS_2                         16                           70
  CLUS_3                          8                          158
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 33(15Q23) MUTATED        2      8      3      1      2      4
  DEL PEAK 33(15Q23) WILD-TYPE     39     29     36     11     39     20
D82V5, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                          2                           39
  CLUS_2                          8                           29
  CLUS_3                          3                           36
  CLUS_4                          1                           11
  CLUS_5                          2                           39
  CLUS_6                          4                           20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q23) MUTATED        6      7      4      3
  DEL PEAK 33(15Q23) WILD-TYPE     61     60     39     14
D82V6, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                          6                           61
  CLUS_2                          7                           60
  CLUS_3                          4                           39
  CLUS_4                          3                           14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q23) MUTATED       93      9      8
  DEL PEAK 33(15Q23) WILD-TYPE    131    141    137
D82V7, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                         93                          131
  CLUS_2                          9                          141
  CLUS_3                          8                          137
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q23) MUTATED       81     21      8
  DEL PEAK 33(15Q23) WILD-TYPE     82    192    135
D82V8, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                         81                           82
  CLUS_2                         21                          192
  CLUS_3                          8                          135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q23) MUTATED       13     85     10
  DEL PEAK 33(15Q23) WILD-TYPE    128    134    145
D82V9, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                         13                          128
  CLUS_2                         85                          134
  CLUS_3                         10                          145
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 33(15Q23) MUTATED        2     75      5     26
  DEL PEAK 33(15Q23) WILD-TYPE     53     87    111    156
D82V10, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                          2                           53
  CLUS_2                         75                           87
  CLUS_3                          5                          111
  CLUS_4                         26                          156
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q23) MUTATED       10     64     20
  DEL PEAK 33(15Q23) WILD-TYPE    111    113     74
D82V11, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                         10                          111
  CLUS_2                         64                          113
  CLUS_3                         20                           74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 33(15Q23) MUTATED       59      9     26
  DEL PEAK 33(15Q23) WILD-TYPE    112     99     87
D82V12, multiclass
        clus
vv       DEL PEAK 33(15Q23) MUTATED DEL PEAK 33(15Q23) WILD-TYPE
  CLUS_1                         59                          112
  CLUS_2                          9                           99
  CLUS_3                         26                           87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(83) Variable = DEL PEAK 34(16P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(16P13.3) MUTATED        1      6      0      0
  DEL PEAK 34(16P13.3) WILD-TYPE     13     11     12     10
D83V1, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            6                             11
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(16P13.3) MUTATED        3      4      0      0      0
  DEL PEAK 34(16P13.3) WILD-TYPE     11      5      7      7     16
D83V2, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            4                              5
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 34(16P13.3) MUTATED        2      8     78      0      0
  DEL PEAK 34(16P13.3) WILD-TYPE    303     40     76     12      5
D83V3, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            2                            303
  CLUS_2                            8                             40
  CLUS_3                           78                             76
  CLUS_4                            0                             12
  CLUS_5                            0                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16P13.3) MUTATED       58     17      4
  DEL PEAK 34(16P13.3) WILD-TYPE    100     69    162
D83V4, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           58                            100
  CLUS_2                           17                             69
  CLUS_3                            4                            162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 34(16P13.3) MUTATED        4      7      1      0      1      3
  DEL PEAK 34(16P13.3) WILD-TYPE     37     30     38     12     40     21
D83V5, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            4                             37
  CLUS_2                            7                             30
  CLUS_3                            1                             38
  CLUS_4                            0                             12
  CLUS_5                            1                             40
  CLUS_6                            3                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(16P13.3) MUTATED        9      2      2      3
  DEL PEAK 34(16P13.3) WILD-TYPE     58     65     41     14
D83V6, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            9                             58
  CLUS_2                            2                             65
  CLUS_3                            2                             41
  CLUS_4                            3                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16P13.3) MUTATED       79      2      7
  DEL PEAK 34(16P13.3) WILD-TYPE    145    148    138
D83V7, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           79                            145
  CLUS_2                            2                            148
  CLUS_3                            7                            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16P13.3) MUTATED       68     13      7
  DEL PEAK 34(16P13.3) WILD-TYPE     95    200    136
D83V8, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           68                             95
  CLUS_2                           13                            200
  CLUS_3                            7                            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16P13.3) MUTATED        7     72      7
  DEL PEAK 34(16P13.3) WILD-TYPE    134    147    148
D83V9, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            7                            134
  CLUS_2                           72                            147
  CLUS_3                            7                            148
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 34(16P13.3) MUTATED        0     66      5     15
  DEL PEAK 34(16P13.3) WILD-TYPE     55     96    111    167
D83V10, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            0                             55
  CLUS_2                           66                             96
  CLUS_3                            5                            111
  CLUS_4                           15                            167
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16P13.3) MUTATED        9     48     21
  DEL PEAK 34(16P13.3) WILD-TYPE    112    129     73
D83V11, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            9                            112
  CLUS_2                           48                            129
  CLUS_3                           21                             73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 34(16P13.3) MUTATED       47      7     24
  DEL PEAK 34(16P13.3) WILD-TYPE    124    101     89
D83V12, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           47                            124
  CLUS_2                            7                            101
  CLUS_3                           24                             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(84) Variable = DEL PEAK 35(16Q21) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(16Q21) MUTATED        0      8      1      0
  DEL PEAK 35(16Q21) WILD-TYPE     14      9     11     10
D84V1, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                          0                           14
  CLUS_2                          8                            9
  CLUS_3                          1                           11
  CLUS_4                          0                           10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(16Q21) MUTATED        1      7      0      0      1
  DEL PEAK 35(16Q21) WILD-TYPE     13      2      7      7     15
D84V2, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                          1                           13
  CLUS_2                          7                            2
  CLUS_3                          0                            7
  CLUS_4                          0                            7
  CLUS_5                          1                           15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 35(16Q21) MUTATED       15     14    121      0      0
  DEL PEAK 35(16Q21) WILD-TYPE    290     34     33     12      5
D84V3, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                         15                          290
  CLUS_2                         14                           34
  CLUS_3                        121                           33
  CLUS_4                          0                           12
  CLUS_5                          0                            5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q21) MUTATED       89     26     16
  DEL PEAK 35(16Q21) WILD-TYPE     69     60    150
D84V4, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                         89                           69
  CLUS_2                         26                           60
  CLUS_3                         16                          150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 35(16Q21) MUTATED        6     11      3      1      6      7
  DEL PEAK 35(16Q21) WILD-TYPE     35     26     36     11     35     17
D84V5, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                          6                           35
  CLUS_2                         11                           26
  CLUS_3                          3                           36
  CLUS_4                          1                           11
  CLUS_5                          6                           35
  CLUS_6                          7                           17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(16Q21) MUTATED       12     11      6      5
  DEL PEAK 35(16Q21) WILD-TYPE     55     56     37     12
D84V6, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                         12                           55
  CLUS_2                         11                           56
  CLUS_3                          6                           37
  CLUS_4                          5                           12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q21) MUTATED      119     15     15
  DEL PEAK 35(16Q21) WILD-TYPE    105    135    130
D84V7, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                        119                          105
  CLUS_2                         15                          135
  CLUS_3                         15                          130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q21) MUTATED      100     34     15
  DEL PEAK 35(16Q21) WILD-TYPE     63    179    128
D84V8, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                        100                           63
  CLUS_2                         34                          179
  CLUS_3                         15                          128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q21) MUTATED       21    108     17
  DEL PEAK 35(16Q21) WILD-TYPE    120    111    138
D84V9, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                         21                          120
  CLUS_2                        108                          111
  CLUS_3                         17                          138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 35(16Q21) MUTATED        7     95     12     32
  DEL PEAK 35(16Q21) WILD-TYPE     48     67    104    150
D84V10, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                          7                           48
  CLUS_2                         95                           67
  CLUS_3                         12                          104
  CLUS_4                         32                          150
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q21) MUTATED       18     79     32
  DEL PEAK 35(16Q21) WILD-TYPE    103     98     62
D84V11, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                         18                          103
  CLUS_2                         79                           98
  CLUS_3                         32                           62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 35(16Q21) MUTATED       76     18     35
  DEL PEAK 35(16Q21) WILD-TYPE     95     90     78
D84V12, multiclass
        clus
vv       DEL PEAK 35(16Q21) MUTATED DEL PEAK 35(16Q21) WILD-TYPE
  CLUS_1                         76                           95
  CLUS_2                         18                           90
  CLUS_3                         35                           78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(85) Variable = DEL PEAK 36(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(16Q23.1) MUTATED        1      9      2      0
  DEL PEAK 36(16Q23.1) WILD-TYPE     13      8     10     10
D85V1, multiclass
        clus
vv       DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            9                              8
  CLUS_3                            2                             10
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(16Q23.1) MUTATED        4      7      0      0      1
  DEL PEAK 36(16Q23.1) WILD-TYPE     10      2      7      7     15
D85V2, multiclass
        clus
vv       DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            7                              2
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            1                             15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 36(16Q23.1) MUTATED       20     14    127      0      0
  DEL PEAK 36(16Q23.1) WILD-TYPE    285     34     27     12      5
D85V3, multiclass
        clus
vv       DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE
  CLUS_1                           20                            285
  CLUS_2                           14                             34
  CLUS_3                          127                             27
  CLUS_4                            0                             12
  CLUS_5                            0                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16Q23.1) MUTATED       91     27     19
  DEL PEAK 36(16Q23.1) WILD-TYPE     67     59    147
D85V4, multiclass
        clus
vv       DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE
  CLUS_1                           91                             67
  CLUS_2                           27                             59
  CLUS_3                           19                            147
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 36(16Q23.1) MUTATED        8     15      4      2      6      6
  DEL PEAK 36(16Q23.1) WILD-TYPE     33     22     35     10     35     18
D85V5, multiclass
        clus
vv       DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE
  CLUS_1                            8                             33
  CLUS_2                           15                             22
  CLUS_3                            4                             35
  CLUS_4                            2                             10
  CLUS_5                            6                             35
  CLUS_6                            6                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(16Q23.1) MUTATED       16     13      8      4
  DEL PEAK 36(16Q23.1) WILD-TYPE     51     54     35     13
D85V6, multiclass
        clus
vv       DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE
  CLUS_1                           16                             51
  CLUS_2                           13                             54
  CLUS_3                            8                             35
  CLUS_4                            4                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16Q23.1) MUTATED      128     17     16
  DEL PEAK 36(16Q23.1) WILD-TYPE     96    133    129
D85V7, multiclass
        clus
vv       DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE
  CLUS_1                          128                             96
  CLUS_2                           17                            133
  CLUS_3                           16                            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16Q23.1) MUTATED      106     39     16
  DEL PEAK 36(16Q23.1) WILD-TYPE     57    174    127
D85V8, multiclass
        clus
vv       DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE
  CLUS_1                          106                             57
  CLUS_2                           39                            174
  CLUS_3                           16                            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16Q23.1) MUTATED       22    115     19
  DEL PEAK 36(16Q23.1) WILD-TYPE    119    104    136
D85V9, multiclass
        clus
vv       DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE
  CLUS_1                           22                            119
  CLUS_2                          115                            104
  CLUS_3                           19                            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 36(16Q23.1) MUTATED        7    103     13     33
  DEL PEAK 36(16Q23.1) WILD-TYPE     48     59    103    149
D85V10, multiclass
        clus
vv       DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE
  CLUS_1                            7                             48
  CLUS_2                          103                             59
  CLUS_3                           13                            103
  CLUS_4                           33                            149
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16Q23.1) MUTATED       18     81     36
  DEL PEAK 36(16Q23.1) WILD-TYPE    103     96     58
D85V11, multiclass
        clus
vv       DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE
  CLUS_1                           18                            103
  CLUS_2                           81                             96
  CLUS_3                           36                             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 36(16Q23.1) MUTATED       77     17     41
  DEL PEAK 36(16Q23.1) WILD-TYPE     94     91     72
D85V12, multiclass
        clus
vv       DEL PEAK 36(16Q23.1) MUTATED DEL PEAK 36(16Q23.1) WILD-TYPE
  CLUS_1                           77                             94
  CLUS_2                           17                             91
  CLUS_3                           41                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(86) Variable = DEL PEAK 37(17P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(17P13.3) MUTATED        0      8      1      0
  DEL PEAK 37(17P13.3) WILD-TYPE     14      9     11     10
D86V1, multiclass
        clus
vv       DEL PEAK 37(17P13.3) MUTATED DEL PEAK 37(17P13.3) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            8                              9
  CLUS_3                            1                             11
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(17P13.3) MUTATED        1      7      1      0      0
  DEL PEAK 37(17P13.3) WILD-TYPE     13      2      6      7     16
D86V2, multiclass
        clus
vv       DEL PEAK 37(17P13.3) MUTATED DEL PEAK 37(17P13.3) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            7                              2
  CLUS_3                            1                              6
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 37(17P13.3) MUTATED        3     14     98      0      0
  DEL PEAK 37(17P13.3) WILD-TYPE    302     34     56     12      5
D86V3, multiclass
        clus
vv       DEL PEAK 37(17P13.3) MUTATED DEL PEAK 37(17P13.3) WILD-TYPE
  CLUS_1                            3                            302
  CLUS_2                           14                             34
  CLUS_3                           98                             56
  CLUS_4                            0                             12
  CLUS_5                            0                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(17P13.3) MUTATED       65     20     12
  DEL PEAK 37(17P13.3) WILD-TYPE     93     66    154
D86V4, multiclass
        clus
vv       DEL PEAK 37(17P13.3) MUTATED DEL PEAK 37(17P13.3) WILD-TYPE
  CLUS_1                           65                             93
  CLUS_2                           20                             66
  CLUS_3                           12                            154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 37(17P13.3) MUTATED        3     10      3      0      2      8
  DEL PEAK 37(17P13.3) WILD-TYPE     38     27     36     12     39     16
D86V5, multiclass
        clus
vv       DEL PEAK 37(17P13.3) MUTATED DEL PEAK 37(17P13.3) WILD-TYPE
  CLUS_1                            3                             38
  CLUS_2                           10                             27
  CLUS_3                            3                             36
  CLUS_4                            0                             12
  CLUS_5                            2                             39
  CLUS_6                            8                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(17P13.3) MUTATED       10      8      4      4
  DEL PEAK 37(17P13.3) WILD-TYPE     57     59     39     13
D86V6, multiclass
        clus
vv       DEL PEAK 37(17P13.3) MUTATED DEL PEAK 37(17P13.3) WILD-TYPE
  CLUS_1                           10                             57
  CLUS_2                            8                             59
  CLUS_3                            4                             39
  CLUS_4                            4                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(17P13.3) MUTATED       94      6     14
  DEL PEAK 37(17P13.3) WILD-TYPE    130    144    131
D86V7, multiclass
        clus
vv       DEL PEAK 37(17P13.3) MUTATED DEL PEAK 37(17P13.3) WILD-TYPE
  CLUS_1                           94                            130
  CLUS_2                            6                            144
  CLUS_3                           14                            131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(17P13.3) MUTATED       80     18     16
  DEL PEAK 37(17P13.3) WILD-TYPE     83    195    127
D86V8, multiclass
        clus
vv       DEL PEAK 37(17P13.3) MUTATED DEL PEAK 37(17P13.3) WILD-TYPE
  CLUS_1                           80                             83
  CLUS_2                           18                            195
  CLUS_3                           16                            127
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(17P13.3) MUTATED       11     85     16
  DEL PEAK 37(17P13.3) WILD-TYPE    130    134    139
D86V9, multiclass
        clus
vv       DEL PEAK 37(17P13.3) MUTATED DEL PEAK 37(17P13.3) WILD-TYPE
  CLUS_1                           11                            130
  CLUS_2                           85                            134
  CLUS_3                           16                            139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 37(17P13.3) MUTATED        2     72     11     27
  DEL PEAK 37(17P13.3) WILD-TYPE     53     90    105    155
D86V10, multiclass
        clus
vv       DEL PEAK 37(17P13.3) MUTATED DEL PEAK 37(17P13.3) WILD-TYPE
  CLUS_1                            2                             53
  CLUS_2                           72                             90
  CLUS_3                           11                            105
  CLUS_4                           27                            155
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(17P13.3) MUTATED       17     54     23
  DEL PEAK 37(17P13.3) WILD-TYPE    104    123     71
D86V11, multiclass
        clus
vv       DEL PEAK 37(17P13.3) MUTATED DEL PEAK 37(17P13.3) WILD-TYPE
  CLUS_1                           17                            104
  CLUS_2                           54                            123
  CLUS_3                           23                             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 37(17P13.3) MUTATED       51     17     26
  DEL PEAK 37(17P13.3) WILD-TYPE    120     91     87
D86V12, multiclass
        clus
vv       DEL PEAK 37(17P13.3) MUTATED DEL PEAK 37(17P13.3) WILD-TYPE
  CLUS_1                           51                            120
  CLUS_2                           17                             91
  CLUS_3                           26                             87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(87) Variable = DEL PEAK 38(17P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(17P11.2) MUTATED        0      8      1      0
  DEL PEAK 38(17P11.2) WILD-TYPE     14      9     11     10
D87V1, multiclass
        clus
vv       DEL PEAK 38(17P11.2) MUTATED DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            8                              9
  CLUS_3                            1                             11
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(17P11.2) MUTATED        0      8      1      0      0
  DEL PEAK 38(17P11.2) WILD-TYPE     14      1      6      7     16
D87V2, multiclass
        clus
vv       DEL PEAK 38(17P11.2) MUTATED DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            8                              1
  CLUS_3                            1                              6
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 38(17P11.2) MUTATED        4     13    105      0      0
  DEL PEAK 38(17P11.2) WILD-TYPE    301     35     49     12      5
D87V3, multiclass
        clus
vv       DEL PEAK 38(17P11.2) MUTATED DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                            4                            301
  CLUS_2                           13                             35
  CLUS_3                          105                             49
  CLUS_4                            0                             12
  CLUS_5                            0                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17P11.2) MUTATED       73     21     12
  DEL PEAK 38(17P11.2) WILD-TYPE     85     65    154
D87V4, multiclass
        clus
vv       DEL PEAK 38(17P11.2) MUTATED DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                           73                             85
  CLUS_2                           21                             65
  CLUS_3                           12                            154
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 38(17P11.2) MUTATED        6      8      3      0      1      8
  DEL PEAK 38(17P11.2) WILD-TYPE     35     29     36     12     40     16
D87V5, multiclass
        clus
vv       DEL PEAK 38(17P11.2) MUTATED DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                            6                             35
  CLUS_2                            8                             29
  CLUS_3                            3                             36
  CLUS_4                            0                             12
  CLUS_5                            1                             40
  CLUS_6                            8                             16
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(17P11.2) MUTATED       10      8      3      5
  DEL PEAK 38(17P11.2) WILD-TYPE     57     59     40     12
D87V6, multiclass
        clus
vv       DEL PEAK 38(17P11.2) MUTATED DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                           10                             57
  CLUS_2                            8                             59
  CLUS_3                            3                             40
  CLUS_4                            5                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17P11.2) MUTATED      104      5     13
  DEL PEAK 38(17P11.2) WILD-TYPE    120    145    132
D87V7, multiclass
        clus
vv       DEL PEAK 38(17P11.2) MUTATED DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                          104                            120
  CLUS_2                            5                            145
  CLUS_3                           13                            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17P11.2) MUTATED       89     18     15
  DEL PEAK 38(17P11.2) WILD-TYPE     74    195    128
D87V8, multiclass
        clus
vv       DEL PEAK 38(17P11.2) MUTATED DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                           89                             74
  CLUS_2                           18                            195
  CLUS_3                           15                            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17P11.2) MUTATED       10     91     17
  DEL PEAK 38(17P11.2) WILD-TYPE    131    128    138
D87V9, multiclass
        clus
vv       DEL PEAK 38(17P11.2) MUTATED DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                           10                            131
  CLUS_2                           91                            128
  CLUS_3                           17                            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 38(17P11.2) MUTATED        1     80     12     25
  DEL PEAK 38(17P11.2) WILD-TYPE     54     82    104    157
D87V10, multiclass
        clus
vv       DEL PEAK 38(17P11.2) MUTATED DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                            1                             54
  CLUS_2                           80                             82
  CLUS_3                           12                            104
  CLUS_4                           25                            157
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17P11.2) MUTATED       17     60     26
  DEL PEAK 38(17P11.2) WILD-TYPE    104    117     68
D87V11, multiclass
        clus
vv       DEL PEAK 38(17P11.2) MUTATED DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                           17                            104
  CLUS_2                           60                            117
  CLUS_3                           26                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 38(17P11.2) MUTATED       57     17     29
  DEL PEAK 38(17P11.2) WILD-TYPE    114     91     84
D87V12, multiclass
        clus
vv       DEL PEAK 38(17P11.2) MUTATED DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                           57                            114
  CLUS_2                           17                             91
  CLUS_3                           29                             84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(88) Variable = DEL PEAK 39(17P11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17P11.2) MUTATED        0      8      0      0
  DEL PEAK 39(17P11.2) WILD-TYPE     14      9     12     10
D88V1, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            8                              9
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(17P11.2) MUTATED        1      7      0      0      0
  DEL PEAK 39(17P11.2) WILD-TYPE     13      2      7      7     16
D88V2, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            7                              2
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 39(17P11.2) MUTATED        2     12    102      0      0
  DEL PEAK 39(17P11.2) WILD-TYPE    303     36     52     12      5
D88V3, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                            2                            303
  CLUS_2                           12                             36
  CLUS_3                          102                             52
  CLUS_4                            0                             12
  CLUS_5                            0                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P11.2) MUTATED       70     21     11
  DEL PEAK 39(17P11.2) WILD-TYPE     88     65    155
D88V4, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                           70                             88
  CLUS_2                           21                             65
  CLUS_3                           11                            155
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 39(17P11.2) MUTATED        6      8      3      0      1      6
  DEL PEAK 39(17P11.2) WILD-TYPE     35     29     36     12     40     18
D88V5, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                            6                             35
  CLUS_2                            8                             29
  CLUS_3                            3                             36
  CLUS_4                            0                             12
  CLUS_5                            1                             40
  CLUS_6                            6                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17P11.2) MUTATED       10      7      3      4
  DEL PEAK 39(17P11.2) WILD-TYPE     57     60     40     13
D88V6, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                           10                             57
  CLUS_2                            7                             60
  CLUS_3                            3                             40
  CLUS_4                            4                             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P11.2) MUTATED       99      5     12
  DEL PEAK 39(17P11.2) WILD-TYPE    125    145    133
D88V7, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                           99                            125
  CLUS_2                            5                            145
  CLUS_3                           12                            133
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P11.2) MUTATED       83     19     14
  DEL PEAK 39(17P11.2) WILD-TYPE     80    194    129
D88V8, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                           83                             80
  CLUS_2                           19                            194
  CLUS_3                           14                            129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P11.2) MUTATED        9     88     16
  DEL PEAK 39(17P11.2) WILD-TYPE    132    131    139
D88V9, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                            9                            132
  CLUS_2                           88                            131
  CLUS_3                           16                            139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 39(17P11.2) MUTATED        1     76     11     25
  DEL PEAK 39(17P11.2) WILD-TYPE     54     86    105    157
D88V10, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                            1                             54
  CLUS_2                           76                             86
  CLUS_3                           11                            105
  CLUS_4                           25                            157
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P11.2) MUTATED       16     60     24
  DEL PEAK 39(17P11.2) WILD-TYPE    105    117     70
D88V11, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                           16                            105
  CLUS_2                           60                            117
  CLUS_3                           24                             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 39(17P11.2) MUTATED       56     16     28
  DEL PEAK 39(17P11.2) WILD-TYPE    115     92     85
D88V12, multiclass
        clus
vv       DEL PEAK 39(17P11.2) MUTATED DEL PEAK 39(17P11.2) WILD-TYPE
  CLUS_1                           56                            115
  CLUS_2                           16                             92
  CLUS_3                           28                             85
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(89) Variable = DEL PEAK 40(17Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17Q11.2) MUTATED        0      7      0      0
  DEL PEAK 40(17Q11.2) WILD-TYPE     14     10     12     10
D89V1, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            7                             10
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(17Q11.2) MUTATED        0      7      0      0      0
  DEL PEAK 40(17Q11.2) WILD-TYPE     14      2      7      7     16
D89V2, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            7                              2
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 40(17Q11.2) MUTATED        2     13     86      0      0
  DEL PEAK 40(17Q11.2) WILD-TYPE    303     35     68     12      5
D89V3, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                            2                            303
  CLUS_2                           13                             35
  CLUS_3                           86                             68
  CLUS_4                            0                             12
  CLUS_5                            0                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q11.2) MUTATED       54     18     14
  DEL PEAK 40(17Q11.2) WILD-TYPE    104     68    152
D89V4, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           54                            104
  CLUS_2                           18                             68
  CLUS_3                           14                            152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 40(17Q11.2) MUTATED        3      9      3      0      2      6
  DEL PEAK 40(17Q11.2) WILD-TYPE     38     28     36     12     39     18
D89V5, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                            3                             38
  CLUS_2                            9                             28
  CLUS_3                            3                             36
  CLUS_4                            0                             12
  CLUS_5                            2                             39
  CLUS_6                            6                             18
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17Q11.2) MUTATED        8      8      4      3
  DEL PEAK 40(17Q11.2) WILD-TYPE     59     59     39     14
D89V6, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                            8                             59
  CLUS_2                            8                             59
  CLUS_3                            4                             39
  CLUS_4                            3                             14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q11.2) MUTATED       80      7     13
  DEL PEAK 40(17Q11.2) WILD-TYPE    144    143    132
D89V7, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           80                            144
  CLUS_2                            7                            143
  CLUS_3                           13                            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q11.2) MUTATED       63     22     15
  DEL PEAK 40(17Q11.2) WILD-TYPE    100    191    128
D89V8, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           63                            100
  CLUS_2                           22                            191
  CLUS_3                           15                            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q11.2) MUTATED       10     70     17
  DEL PEAK 40(17Q11.2) WILD-TYPE    131    149    138
D89V9, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           10                            131
  CLUS_2                           70                            149
  CLUS_3                           17                            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 40(17Q11.2) MUTATED        2     58     12     25
  DEL PEAK 40(17Q11.2) WILD-TYPE     53    104    104    157
D89V10, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                            2                             53
  CLUS_2                           58                            104
  CLUS_3                           12                            104
  CLUS_4                           25                            157
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q11.2) MUTATED       17     52     16
  DEL PEAK 40(17Q11.2) WILD-TYPE    104    125     78
D89V11, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           17                            104
  CLUS_2                           52                            125
  CLUS_3                           16                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 40(17Q11.2) MUTATED       48     17     20
  DEL PEAK 40(17Q11.2) WILD-TYPE    123     91     93
D89V12, multiclass
        clus
vv       DEL PEAK 40(17Q11.2) MUTATED DEL PEAK 40(17Q11.2) WILD-TYPE
  CLUS_1                           48                            123
  CLUS_2                           17                             91
  CLUS_3                           20                             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(90) Variable = DEL PEAK 41(17Q21.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(17Q21.31) MUTATED        0      7      0      0
  DEL PEAK 41(17Q21.31) WILD-TYPE     14     10     12     10
D90V1, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                             0                              14
  CLUS_2                             7                              10
  CLUS_3                             0                              12
  CLUS_4                             0                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(17Q21.31) MUTATED        1      6      0      0      0
  DEL PEAK 41(17Q21.31) WILD-TYPE     13      3      7      7     16
D90V2, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                             1                              13
  CLUS_2                             6                               3
  CLUS_3                             0                               7
  CLUS_4                             0                               7
  CLUS_5                             0                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 41(17Q21.31) MUTATED        1     12     87      0      0
  DEL PEAK 41(17Q21.31) WILD-TYPE    304     36     67     12      5
D90V3, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                             1                             304
  CLUS_2                            12                              36
  CLUS_3                            87                              67
  CLUS_4                             0                              12
  CLUS_5                             0                               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q21.31) MUTATED       57     18     13
  DEL PEAK 41(17Q21.31) WILD-TYPE    101     68    153
D90V4, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                            57                             101
  CLUS_2                            18                              68
  CLUS_3                            13                             153
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 41(17Q21.31) MUTATED        4      9      3      0      1      4
  DEL PEAK 41(17Q21.31) WILD-TYPE     37     28     36     12     40     20
D90V5, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                             4                              37
  CLUS_2                             9                              28
  CLUS_3                             3                              36
  CLUS_4                             0                              12
  CLUS_5                             1                              40
  CLUS_6                             4                              20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(17Q21.31) MUTATED        9      7      3      2
  DEL PEAK 41(17Q21.31) WILD-TYPE     58     60     40     15
D90V6, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                             9                              58
  CLUS_2                             7                              60
  CLUS_3                             3                              40
  CLUS_4                             2                              15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q21.31) MUTATED       79      6     14
  DEL PEAK 41(17Q21.31) WILD-TYPE    145    144    131
D90V7, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                            79                             145
  CLUS_2                             6                             144
  CLUS_3                            14                             131
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q21.31) MUTATED       63     21     15
  DEL PEAK 41(17Q21.31) WILD-TYPE    100    192    128
D90V8, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                            63                             100
  CLUS_2                            21                             192
  CLUS_3                            15                             128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q21.31) MUTATED       11     68     17
  DEL PEAK 41(17Q21.31) WILD-TYPE    130    151    138
D90V9, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                            11                             130
  CLUS_2                            68                             151
  CLUS_3                            17                             138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 41(17Q21.31) MUTATED        1     57     13     25
  DEL PEAK 41(17Q21.31) WILD-TYPE     54    105    103    157
D90V10, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                             1                              54
  CLUS_2                            57                             105
  CLUS_3                            13                             103
  CLUS_4                            25                             157
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q21.31) MUTATED       18     53     16
  DEL PEAK 41(17Q21.31) WILD-TYPE    103    124     78
D90V11, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                            18                             103
  CLUS_2                            53                             124
  CLUS_3                            16                              78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 41(17Q21.31) MUTATED       47     19     21
  DEL PEAK 41(17Q21.31) WILD-TYPE    124     89     92
D90V12, multiclass
        clus
vv       DEL PEAK 41(17Q21.31) MUTATED DEL PEAK 41(17Q21.31) WILD-TYPE
  CLUS_1                            47                             124
  CLUS_2                            19                              89
  CLUS_3                            21                              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(91) Variable = DEL PEAK 42(18Q21.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q21.2) MUTATED        1      3      1      0
  DEL PEAK 42(18Q21.2) WILD-TYPE     13     14     11     10
D91V1, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            3                             14
  CLUS_3                            1                             11
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(18Q21.2) MUTATED        2      2      1      0      0
  DEL PEAK 42(18Q21.2) WILD-TYPE     12      7      6      7     16
D91V2, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            2                              7
  CLUS_3                            1                              6
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 42(18Q21.2) MUTATED        2     17     69      0      2
  DEL PEAK 42(18Q21.2) WILD-TYPE    303     31     85     12      3
D91V3, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                            2                            303
  CLUS_2                           17                             31
  CLUS_3                           69                             85
  CLUS_4                            0                             12
  CLUS_5                            2                              3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q21.2) MUTATED       56     14     10
  DEL PEAK 42(18Q21.2) WILD-TYPE    102     72    156
D91V4, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           56                            102
  CLUS_2                           14                             72
  CLUS_3                           10                            156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 42(18Q21.2) MUTATED        6      7      1      1      1      4
  DEL PEAK 42(18Q21.2) WILD-TYPE     35     30     38     11     40     20
D91V5, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                            6                             35
  CLUS_2                            7                             30
  CLUS_3                            1                             38
  CLUS_4                            1                             11
  CLUS_5                            1                             40
  CLUS_6                            4                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q21.2) MUTATED        9      6      3      2
  DEL PEAK 42(18Q21.2) WILD-TYPE     58     61     40     15
D91V6, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                            9                             58
  CLUS_2                            6                             61
  CLUS_3                            3                             40
  CLUS_4                            2                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q21.2) MUTATED       74      6     10
  DEL PEAK 42(18Q21.2) WILD-TYPE    150    144    135
D91V7, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           74                            150
  CLUS_2                            6                            144
  CLUS_3                           10                            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q21.2) MUTATED       55     24     11
  DEL PEAK 42(18Q21.2) WILD-TYPE    108    189    132
D91V8, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           55                            108
  CLUS_2                           24                            189
  CLUS_3                           11                            132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q21.2) MUTATED        7     71     11
  DEL PEAK 42(18Q21.2) WILD-TYPE    134    148    144
D91V9, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                            7                            134
  CLUS_2                           71                            148
  CLUS_3                           11                            144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 42(18Q21.2) MUTATED        0     56      6     27
  DEL PEAK 42(18Q21.2) WILD-TYPE     55    106    110    155
D91V10, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                            0                             55
  CLUS_2                           56                            106
  CLUS_3                            6                            110
  CLUS_4                           27                            155
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q21.2) MUTATED       12     50     17
  DEL PEAK 42(18Q21.2) WILD-TYPE    109    127     77
D91V11, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           12                            109
  CLUS_2                           50                            127
  CLUS_3                           17                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 42(18Q21.2) MUTATED       49     12     18
  DEL PEAK 42(18Q21.2) WILD-TYPE    122     96     95
D91V12, multiclass
        clus
vv       DEL PEAK 42(18Q21.2) MUTATED DEL PEAK 42(18Q21.2) WILD-TYPE
  CLUS_1                           49                            122
  CLUS_2                           12                             96
  CLUS_3                           18                             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(92) Variable = DEL PEAK 43(18Q23) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q23) MUTATED        1      3      1      0
  DEL PEAK 43(18Q23) WILD-TYPE     13     14     11     10
D92V1, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                          1                           13
  CLUS_2                          3                           14
  CLUS_3                          1                           11
  CLUS_4                          0                           10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(18Q23) MUTATED        2      2      1      0      0
  DEL PEAK 43(18Q23) WILD-TYPE     12      7      6      7     16
D92V2, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                          2                           12
  CLUS_2                          2                            7
  CLUS_3                          1                            6
  CLUS_4                          0                            7
  CLUS_5                          0                           16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 43(18Q23) MUTATED        2     18     74      1      1
  DEL PEAK 43(18Q23) WILD-TYPE    303     30     80     11      4
D92V3, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                          2                          303
  CLUS_2                         18                           30
  CLUS_3                         74                           80
  CLUS_4                          1                           11
  CLUS_5                          1                            4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q23) MUTATED       60     14     10
  DEL PEAK 43(18Q23) WILD-TYPE     98     72    156
D92V4, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                         60                           98
  CLUS_2                         14                           72
  CLUS_3                         10                          156
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 43(18Q23) MUTATED        6      9      1      1      2      3
  DEL PEAK 43(18Q23) WILD-TYPE     35     28     38     11     39     21
D92V5, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                          6                           35
  CLUS_2                          9                           28
  CLUS_3                          1                           38
  CLUS_4                          1                           11
  CLUS_5                          2                           39
  CLUS_6                          3                           21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q23) MUTATED        9      8      4      1
  DEL PEAK 43(18Q23) WILD-TYPE     58     59     39     16
D92V6, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                          9                           58
  CLUS_2                          8                           59
  CLUS_3                          4                           39
  CLUS_4                          1                           16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q23) MUTATED       80      6     10
  DEL PEAK 43(18Q23) WILD-TYPE    144    144    135
D92V7, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                         80                          144
  CLUS_2                          6                          144
  CLUS_3                         10                          135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q23) MUTATED       62     23     11
  DEL PEAK 43(18Q23) WILD-TYPE    101    190    132
D92V8, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                         62                          101
  CLUS_2                         23                          190
  CLUS_3                         11                          132
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q23) MUTATED        9     72     13
  DEL PEAK 43(18Q23) WILD-TYPE    132    147    142
D92V9, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                          9                          132
  CLUS_2                         72                          147
  CLUS_3                         13                          142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 43(18Q23) MUTATED        1     63      7     23
  DEL PEAK 43(18Q23) WILD-TYPE     54     99    109    159
D92V10, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                          1                           54
  CLUS_2                         63                           99
  CLUS_3                          7                          109
  CLUS_4                         23                          159
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q23) MUTATED       13     50     20
  DEL PEAK 43(18Q23) WILD-TYPE    108    127     74
D92V11, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                         13                          108
  CLUS_2                         50                          127
  CLUS_3                         20                           74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 43(18Q23) MUTATED       49     12     22
  DEL PEAK 43(18Q23) WILD-TYPE    122     96     91
D92V12, multiclass
        clus
vv       DEL PEAK 43(18Q23) MUTATED DEL PEAK 43(18Q23) WILD-TYPE
  CLUS_1                         49                          122
  CLUS_2                         12                           96
  CLUS_3                         22                           91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(93) Variable = DEL PEAK 44(19P13.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19P13.3) MUTATED        0     11      0      0
  DEL PEAK 44(19P13.3) WILD-TYPE     14      6     12     10
D93V1, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                           11                              6
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(19P13.3) MUTATED        2      9      0      0      0
  DEL PEAK 44(19P13.3) WILD-TYPE     12      0      7      7     16
D93V2, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            9                              0
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 44(19P13.3) MUTATED        1     14    131      0      1
  DEL PEAK 44(19P13.3) WILD-TYPE    304     34     23     12      4
D93V3, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                            1                            304
  CLUS_2                           14                             34
  CLUS_3                          131                             23
  CLUS_4                            0                             12
  CLUS_5                            1                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED      101     23      5
  DEL PEAK 44(19P13.3) WILD-TYPE     57     63    161
D93V4, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                          101                             57
  CLUS_2                           23                             63
  CLUS_3                            5                            161
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 44(19P13.3) MUTATED        7     14      2      0      1      7
  DEL PEAK 44(19P13.3) WILD-TYPE     34     23     37     12     40     17
D93V5, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                            7                             34
  CLUS_2                           14                             23
  CLUS_3                            2                             37
  CLUS_4                            0                             12
  CLUS_5                            1                             40
  CLUS_6                            7                             17
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19P13.3) MUTATED       16      8      2      5
  DEL PEAK 44(19P13.3) WILD-TYPE     51     59     41     12
D93V6, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           16                             51
  CLUS_2                            8                             59
  CLUS_3                            2                             41
  CLUS_4                            5                             12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED      133      4      9
  DEL PEAK 44(19P13.3) WILD-TYPE     91    146    136
D93V7, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                          133                             91
  CLUS_2                            4                            146
  CLUS_3                            9                            136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED      115     23      8
  DEL PEAK 44(19P13.3) WILD-TYPE     48    190    135
D93V8, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                          115                             48
  CLUS_2                           23                            190
  CLUS_3                            8                            135
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED        8    123     11
  DEL PEAK 44(19P13.3) WILD-TYPE    133     96    144
D93V9, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                            8                            133
  CLUS_2                          123                             96
  CLUS_3                           11                            144
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 44(19P13.3) MUTATED        1    108      8     25
  DEL PEAK 44(19P13.3) WILD-TYPE     54     54    108    157
D93V10, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                            1                             54
  CLUS_2                          108                             54
  CLUS_3                            8                            108
  CLUS_4                           25                            157
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED       13     81     32
  DEL PEAK 44(19P13.3) WILD-TYPE    108     96     62
D93V11, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           13                            108
  CLUS_2                           81                             96
  CLUS_3                           32                             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 44(19P13.3) MUTATED       76     13     37
  DEL PEAK 44(19P13.3) WILD-TYPE     95     95     76
D93V12, multiclass
        clus
vv       DEL PEAK 44(19P13.3) MUTATED DEL PEAK 44(19P13.3) WILD-TYPE
  CLUS_1                           76                             95
  CLUS_2                           13                             95
  CLUS_3                           37                             76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(94) Variable = DEL PEAK 45(19P12) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(19P12) MUTATED        1      1      0      0
  DEL PEAK 45(19P12) WILD-TYPE     13     16     12     10
D94V1, multiclass
[1] "Remove cluster labels:"     "DEL PEAK 45(19P12) MUTATED"
clus
  DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE 
                           2                           51 
                  TCGA-A5-A0G2                   TCGA-A5-A0G5 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-A5-A0GA                   TCGA-A5-A0GB 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-A5-A0GE                   TCGA-A5-A0GH 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-A5-A0GM                   TCGA-A5-A0GP 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-A5-A0GU                   TCGA-AP-A051 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A052                   TCGA-AP-A053 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A054                   TCGA-AP-A056 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A05A                   TCGA-AP-A05H 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A05J                   TCGA-AP-A05N 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A05P                   TCGA-AP-A0L8 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A0L9                   TCGA-AP-A0LD 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A0LG                   TCGA-AP-A0LH 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A0LJ                   TCGA-AP-A0LN 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A0LT                   TCGA-AP-A0LV 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A05S                   TCGA-AX-A05T 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A05U                   TCGA-AX-A05W 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A05Y                   TCGA-AX-A05Z 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A060                   TCGA-AX-A062 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A063                   TCGA-AX-A064 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A06B                   TCGA-AX-A06F 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A06J                   TCGA-AX-A0IW 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A0J1                   TCGA-B5-A0JR 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-B5-A0K0                   TCGA-B5-A0K1 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-B5-A0K4                   TCGA-BG-A0LW 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-BG-A0MI                   TCGA-BK-A0C9 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-BK-A0CC 
"DEL PEAK 45(19P12) WILD-TYPE" 
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 45(19P12) MUTATED        0      1      0      1      0
  DEL PEAK 45(19P12) WILD-TYPE     14      8      7      6     16
D94V2, multiclass
[1] "Remove cluster labels:"     "DEL PEAK 45(19P12) MUTATED"
clus
  DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE 
                           2                           51 
                  TCGA-A5-A0G2                   TCGA-A5-A0G5 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-A5-A0GA                   TCGA-A5-A0GB 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-A5-A0GE                   TCGA-A5-A0GH 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-A5-A0GM                   TCGA-A5-A0GP 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-A5-A0GU                   TCGA-AP-A051 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A052                   TCGA-AP-A053 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A054                   TCGA-AP-A056 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A05A                   TCGA-AP-A05H 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A05J                   TCGA-AP-A05N 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A05P                   TCGA-AP-A0L8 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A0L9                   TCGA-AP-A0LD 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A0LG                   TCGA-AP-A0LH 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A0LJ                   TCGA-AP-A0LN 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AP-A0LT                   TCGA-AP-A0LV 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A05S                   TCGA-AX-A05T 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A05U                   TCGA-AX-A05W 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A05Y                   TCGA-AX-A05Z 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A060                   TCGA-AX-A062 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A063                   TCGA-AX-A064 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A06B                   TCGA-AX-A06F 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A06J                   TCGA-AX-A0IW 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-AX-A0J1                   TCGA-B5-A0JR 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-B5-A0K0                   TCGA-B5-A0K1 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-B5-A0K4                   TCGA-BG-A0LW 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-BG-A0MI                   TCGA-BK-A0C9 
"DEL PEAK 45(19P12) WILD-TYPE" "DEL PEAK 45(19P12) WILD-TYPE" 
                  TCGA-BK-A0CC 
"DEL PEAK 45(19P12) WILD-TYPE" 
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 45(19P12) MUTATED        1     13     42      0      0
  DEL PEAK 45(19P12) WILD-TYPE    304     35    112     12      5
D94V3, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                          1                          304
  CLUS_2                         13                           35
  CLUS_3                         42                          112
  CLUS_4                          0                           12
  CLUS_5                          0                            5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19P12) MUTATED       36     10      4
  DEL PEAK 45(19P12) WILD-TYPE    122     76    162
D94V4, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                         36                          122
  CLUS_2                         10                           76
  CLUS_3                          4                          162
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 45(19P12) MUTATED        1      5      1      0      2      1
  DEL PEAK 45(19P12) WILD-TYPE     40     32     38     12     39     23
D94V5, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                          1                           40
  CLUS_2                          5                           32
  CLUS_3                          1                           38
  CLUS_4                          0                           12
  CLUS_5                          2                           39
  CLUS_6                          1                           23
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(19P12) MUTATED        4      2      4      0
  DEL PEAK 45(19P12) WILD-TYPE     63     65     39     17
D94V6, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                          4                           63
  CLUS_2                          2                           65
  CLUS_3                          4                           39
  CLUS_4                          0                           17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19P12) MUTATED       45      5      6
  DEL PEAK 45(19P12) WILD-TYPE    179    145    139
D94V7, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                         45                          179
  CLUS_2                          5                          145
  CLUS_3                          6                          139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19P12) MUTATED       38     13      5
  DEL PEAK 45(19P12) WILD-TYPE    125    200    138
D94V8, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                         38                          125
  CLUS_2                         13                          200
  CLUS_3                          5                          138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19P12) MUTATED        8     42      5
  DEL PEAK 45(19P12) WILD-TYPE    133    177    150
D94V9, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                          8                          133
  CLUS_2                         42                          177
  CLUS_3                          5                          150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 45(19P12) MUTATED        1     36      4     14
  DEL PEAK 45(19P12) WILD-TYPE     54    126    112    168
D94V10, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                          1                           54
  CLUS_2                         36                          126
  CLUS_3                          4                          112
  CLUS_4                         14                          168
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19P12) MUTATED        8     34      8
  DEL PEAK 45(19P12) WILD-TYPE    113    143     86
D94V11, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                          8                          113
  CLUS_2                         34                          143
  CLUS_3                          8                           86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 45(19P12) MUTATED       35      6      9
  DEL PEAK 45(19P12) WILD-TYPE    136    102    104
D94V12, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                         35                          136
  CLUS_2                          6                          102
  CLUS_3                          9                          104
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(95) Variable = DEL PEAK 46(19Q13.43) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(19Q13.43) MUTATED        0      8      1      0
  DEL PEAK 46(19Q13.43) WILD-TYPE     14      9     11     10
D95V1, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                             0                              14
  CLUS_2                             8                               9
  CLUS_3                             1                              11
  CLUS_4                             0                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 46(19Q13.43) MUTATED        1      7      1      0      0
  DEL PEAK 46(19Q13.43) WILD-TYPE     13      2      6      7     16
D95V2, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                             1                              13
  CLUS_2                             7                               2
  CLUS_3                             1                               6
  CLUS_4                             0                               7
  CLUS_5                             0                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 46(19Q13.43) MUTATED        2      9     53      0      0
  DEL PEAK 46(19Q13.43) WILD-TYPE    303     39    101     12      5
D95V3, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                             2                             303
  CLUS_2                             9                              39
  CLUS_3                            53                             101
  CLUS_4                             0                              12
  CLUS_5                             0                               5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(19Q13.43) MUTATED       40     11      2
  DEL PEAK 46(19Q13.43) WILD-TYPE    118     75    164
D95V4, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                            40                             118
  CLUS_2                            11                              75
  CLUS_3                             2                             164
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 46(19Q13.43) MUTATED        2      5      1      0      1      4
  DEL PEAK 46(19Q13.43) WILD-TYPE     39     32     38     12     40     20
D95V5, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                             2                              39
  CLUS_2                             5                              32
  CLUS_3                             1                              38
  CLUS_4                             0                              12
  CLUS_5                             1                              40
  CLUS_6                             4                              20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(19Q13.43) MUTATED        4      5      1      3
  DEL PEAK 46(19Q13.43) WILD-TYPE     63     62     42     14
D95V6, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                             4                              63
  CLUS_2                             5                              62
  CLUS_3                             1                              42
  CLUS_4                             3                              14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(19Q13.43) MUTATED       56      4      3
  DEL PEAK 46(19Q13.43) WILD-TYPE    168    146    142
D95V7, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                            56                             168
  CLUS_2                             4                             146
  CLUS_3                             3                             142
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(19Q13.43) MUTATED       49     11      3
  DEL PEAK 46(19Q13.43) WILD-TYPE    114    202    140
D95V8, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                            49                             114
  CLUS_2                            11                             202
  CLUS_3                             3                             140
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(19Q13.43) MUTATED        3     52      5
  DEL PEAK 46(19Q13.43) WILD-TYPE    138    167    150
D95V9, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                             3                             138
  CLUS_2                            52                             167
  CLUS_3                             5                             150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 46(19Q13.43) MUTATED        0     46      2     12
  DEL PEAK 46(19Q13.43) WILD-TYPE     55    116    114    170
D95V10, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                             0                              55
  CLUS_2                            46                             116
  CLUS_3                             2                             114
  CLUS_4                            12                             170
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(19Q13.43) MUTATED        4     34     16
  DEL PEAK 46(19Q13.43) WILD-TYPE    117    143     78
D95V11, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                             4                             117
  CLUS_2                            34                             143
  CLUS_3                            16                              78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 46(19Q13.43) MUTATED       30      3     21
  DEL PEAK 46(19Q13.43) WILD-TYPE    141    105     92
D95V12, multiclass
        clus
vv       DEL PEAK 46(19Q13.43) MUTATED DEL PEAK 46(19Q13.43) WILD-TYPE
  CLUS_1                            30                             141
  CLUS_2                             3                             105
  CLUS_3                            21                              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(96) Variable = DEL PEAK 47(20P12.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(20P12.1) MUTATED        1      1      1      0
  DEL PEAK 47(20P12.1) WILD-TYPE     13     16     11     10
D96V1, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            1                             16
  CLUS_3                            1                             11
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 47(20P12.1) MUTATED        1      1      1      0      0
  DEL PEAK 47(20P12.1) WILD-TYPE     13      8      6      7     16
D96V2, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            1                              8
  CLUS_3                            1                              6
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 47(20P12.1) MUTATED        6      6     21      1      0
  DEL PEAK 47(20P12.1) WILD-TYPE    299     42    133     11      5
D96V3, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                            6                            299
  CLUS_2                            6                             42
  CLUS_3                           21                            133
  CLUS_4                            1                             11
  CLUS_5                            0                              5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(20P12.1) MUTATED       15      5      6
  DEL PEAK 47(20P12.1) WILD-TYPE    143     81    160
D96V4, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                           15                            143
  CLUS_2                            5                             81
  CLUS_3                            6                            160
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 47(20P12.1) MUTATED        1      3      1      0      1      4
  DEL PEAK 47(20P12.1) WILD-TYPE     40     34     38     12     40     20
D96V5, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                            1                             40
  CLUS_2                            3                             34
  CLUS_3                            1                             38
  CLUS_4                            0                             12
  CLUS_5                            1                             40
  CLUS_6                            4                             20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(20P12.1) MUTATED        3      3      2      2
  DEL PEAK 47(20P12.1) WILD-TYPE     64     64     41     15
D96V6, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                            3                             64
  CLUS_2                            3                             64
  CLUS_3                            2                             41
  CLUS_4                            2                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(20P12.1) MUTATED       25      3      6
  DEL PEAK 47(20P12.1) WILD-TYPE    199    147    139
D96V7, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                           25                            199
  CLUS_2                            3                            147
  CLUS_3                            6                            139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(20P12.1) MUTATED       21      8      5
  DEL PEAK 47(20P12.1) WILD-TYPE    142    205    138
D96V8, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                           21                            142
  CLUS_2                            8                            205
  CLUS_3                            5                            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(20P12.1) MUTATED        5     23      5
  DEL PEAK 47(20P12.1) WILD-TYPE    136    196    150
D96V9, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                            5                            136
  CLUS_2                           23                            196
  CLUS_3                            5                            150
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 47(20P12.1) MUTATED        1     20      5      7
  DEL PEAK 47(20P12.1) WILD-TYPE     54    142    111    175
D96V10, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                            1                             54
  CLUS_2                           20                            142
  CLUS_3                            5                            111
  CLUS_4                            7                            175
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(20P12.1) MUTATED        5     16      6
  DEL PEAK 47(20P12.1) WILD-TYPE    116    161     88
D96V11, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                            5                            116
  CLUS_2                           16                            161
  CLUS_3                            6                             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 47(20P12.1) MUTATED       15      6      6
  DEL PEAK 47(20P12.1) WILD-TYPE    156    102    107
D96V12, multiclass
        clus
vv       DEL PEAK 47(20P12.1) MUTATED DEL PEAK 47(20P12.1) WILD-TYPE
  CLUS_1                           15                            156
  CLUS_2                            6                            102
  CLUS_3                            6                            107
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(97) Variable = DEL PEAK 48(22Q11.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(22Q11.1) MUTATED        0      6      0      0
  DEL PEAK 48(22Q11.1) WILD-TYPE     14     11     12     10
D97V1, multiclass
        clus
vv       DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE
  CLUS_1                            0                             14
  CLUS_2                            6                             11
  CLUS_3                            0                             12
  CLUS_4                            0                             10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 48(22Q11.1) MUTATED        2      4      0      0      0
  DEL PEAK 48(22Q11.1) WILD-TYPE     12      5      7      7     16
D97V2, multiclass
        clus
vv       DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            4                              5
  CLUS_3                            0                              7
  CLUS_4                            0                              7
  CLUS_5                            0                             16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 48(22Q11.1) MUTATED        3     15     65      0      1
  DEL PEAK 48(22Q11.1) WILD-TYPE    302     33     89     12      4
D97V3, multiclass
        clus
vv       DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE
  CLUS_1                            3                            302
  CLUS_2                           15                             33
  CLUS_3                           65                             89
  CLUS_4                            0                             12
  CLUS_5                            1                              4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q11.1) MUTATED       45     15     14
  DEL PEAK 48(22Q11.1) WILD-TYPE    113     71    152
D97V4, multiclass
        clus
vv       DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE
  CLUS_1                           45                            113
  CLUS_2                           15                             71
  CLUS_3                           14                            152
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 48(22Q11.1) MUTATED        5      5      1      1      2      3
  DEL PEAK 48(22Q11.1) WILD-TYPE     36     32     38     11     39     21
D97V5, multiclass
        clus
vv       DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE
  CLUS_1                            5                             36
  CLUS_2                            5                             32
  CLUS_3                            1                             38
  CLUS_4                            1                             11
  CLUS_5                            2                             39
  CLUS_6                            3                             21
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(22Q11.1) MUTATED        6      5      4      2
  DEL PEAK 48(22Q11.1) WILD-TYPE     61     62     39     15
D97V6, multiclass
        clus
vv       DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE
  CLUS_1                            6                             61
  CLUS_2                            5                             62
  CLUS_3                            4                             39
  CLUS_4                            2                             15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q11.1) MUTATED       63      6     15
  DEL PEAK 48(22Q11.1) WILD-TYPE    161    144    130
D97V7, multiclass
        clus
vv       DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE
  CLUS_1                           63                            161
  CLUS_2                            6                            144
  CLUS_3                           15                            130
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q11.1) MUTATED       47     22     15
  DEL PEAK 48(22Q11.1) WILD-TYPE    116    191    128
D97V8, multiclass
        clus
vv       DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE
  CLUS_1                           47                            116
  CLUS_2                           22                            191
  CLUS_3                           15                            128
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q11.1) MUTATED       10     55     17
  DEL PEAK 48(22Q11.1) WILD-TYPE    131    164    138
D97V9, multiclass
        clus
vv       DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE
  CLUS_1                           10                            131
  CLUS_2                           55                            164
  CLUS_3                           17                            138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 48(22Q11.1) MUTATED        2     46     12     22
  DEL PEAK 48(22Q11.1) WILD-TYPE     53    116    104    160
D97V10, multiclass
        clus
vv       DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE
  CLUS_1                            2                             53
  CLUS_2                           46                            116
  CLUS_3                           12                            104
  CLUS_4                           22                            160
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q11.1) MUTATED       17     39     16
  DEL PEAK 48(22Q11.1) WILD-TYPE    104    138     78
D97V11, multiclass
        clus
vv       DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE
  CLUS_1                           17                            104
  CLUS_2                           39                            138
  CLUS_3                           16                             78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 48(22Q11.1) MUTATED       37     17     18
  DEL PEAK 48(22Q11.1) WILD-TYPE    134     91     95
D97V12, multiclass
        clus
vv       DEL PEAK 48(22Q11.1) MUTATED DEL PEAK 48(22Q11.1) WILD-TYPE
  CLUS_1                           37                            134
  CLUS_2                           17                             91
  CLUS_3                           18                             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(98) Variable = DEL PEAK 49(22Q13.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 49(22Q13.31) MUTATED        0     10      0      0
  DEL PEAK 49(22Q13.31) WILD-TYPE     14      7     12     10
D98V1, multiclass
        clus
vv       DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE
  CLUS_1                             0                              14
  CLUS_2                            10                               7
  CLUS_3                             0                              12
  CLUS_4                             0                              10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 49(22Q13.31) MUTATED        2      8      0      0      0
  DEL PEAK 49(22Q13.31) WILD-TYPE     12      1      7      7     16
D98V2, multiclass
        clus
vv       DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE
  CLUS_1                             2                              12
  CLUS_2                             8                               1
  CLUS_3                             0                               7
  CLUS_4                             0                               7
  CLUS_5                             0                              16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 49(22Q13.31) MUTATED        4     15    111      0      2
  DEL PEAK 49(22Q13.31) WILD-TYPE    301     33     43     12      3
D98V3, multiclass
        clus
vv       DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE
  CLUS_1                             4                             301
  CLUS_2                            15                              33
  CLUS_3                           111                              43
  CLUS_4                             0                              12
  CLUS_5                             2                               3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(22Q13.31) MUTATED       79     21     15
  DEL PEAK 49(22Q13.31) WILD-TYPE     79     65    151
D98V4, multiclass
        clus
vv       DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE
  CLUS_1                            79                              79
  CLUS_2                            21                              65
  CLUS_3                            15                             151
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 49(22Q13.31) MUTATED        7     13      3      1      1      5
  DEL PEAK 49(22Q13.31) WILD-TYPE     34     24     36     11     40     19
D98V5, multiclass
        clus
vv       DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE
  CLUS_1                             7                              34
  CLUS_2                            13                              24
  CLUS_3                             3                              36
  CLUS_4                             1                              11
  CLUS_5                             1                              40
  CLUS_6                             5                              19
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 49(22Q13.31) MUTATED       13     10      3      4
  DEL PEAK 49(22Q13.31) WILD-TYPE     54     57     40     13
D98V6, multiclass
        clus
vv       DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE
  CLUS_1                            13                              54
  CLUS_2                            10                              57
  CLUS_3                             3                              40
  CLUS_4                             4                              13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(22Q13.31) MUTATED      107      8     16
  DEL PEAK 49(22Q13.31) WILD-TYPE    117    142    129
D98V7, multiclass
        clus
vv       DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE
  CLUS_1                           107                             117
  CLUS_2                             8                             142
  CLUS_3                            16                             129
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(22Q13.31) MUTATED       88     26     17
  DEL PEAK 49(22Q13.31) WILD-TYPE     75    187    126
D98V8, multiclass
        clus
vv       DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE
  CLUS_1                            88                              75
  CLUS_2                            26                             187
  CLUS_3                            17                             126
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(22Q13.31) MUTATED       11     97     19
  DEL PEAK 49(22Q13.31) WILD-TYPE    130    122    136
D98V9, multiclass
        clus
vv       DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE
  CLUS_1                            11                             130
  CLUS_2                            97                             122
  CLUS_3                            19                             136
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 49(22Q13.31) MUTATED        1     83     12     31
  DEL PEAK 49(22Q13.31) WILD-TYPE     54     79    104    151
D98V10, multiclass
        clus
vv       DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE
  CLUS_1                             1                              54
  CLUS_2                            83                              79
  CLUS_3                            12                             104
  CLUS_4                            31                             151
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(22Q13.31) MUTATED       19     66     26
  DEL PEAK 49(22Q13.31) WILD-TYPE    102    111     68
D98V11, multiclass
        clus
vv       DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE
  CLUS_1                            19                             102
  CLUS_2                            66                             111
  CLUS_3                            26                              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 49(22Q13.31) MUTATED       61     18     32
  DEL PEAK 49(22Q13.31) WILD-TYPE    110     90     81
D98V12, multiclass
        clus
vv       DEL PEAK 49(22Q13.31) MUTATED DEL PEAK 49(22Q13.31) WILD-TYPE
  CLUS_1                            61                             110
  CLUS_2                            18                              90
  CLUS_3                            32                              81
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(99) Variable = DEL PEAK 50(XP21.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 50(XP21.1) MUTATED        0      7      0      0
  DEL PEAK 50(XP21.1) WILD-TYPE     14     10     12     10
D99V1, multiclass
        clus
vv       DEL PEAK 50(XP21.1) MUTATED DEL PEAK 50(XP21.1) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           7                            10
  CLUS_3                           0                            12
  CLUS_4                           0                            10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 50(XP21.1) MUTATED        2      5      0      0      0
  DEL PEAK 50(XP21.1) WILD-TYPE     12      4      7      7     16
D99V2, multiclass
        clus
vv       DEL PEAK 50(XP21.1) MUTATED DEL PEAK 50(XP21.1) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           5                             4
  CLUS_3                           0                             7
  CLUS_4                           0                             7
  CLUS_5                           0                            16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 50(XP21.1) MUTATED        2     10     72      0      0
  DEL PEAK 50(XP21.1) WILD-TYPE    303     38     82     12      5
D99V3, multiclass
        clus
vv       DEL PEAK 50(XP21.1) MUTATED DEL PEAK 50(XP21.1) WILD-TYPE
  CLUS_1                           2                           303
  CLUS_2                          10                            38
  CLUS_3                          72                            82
  CLUS_4                           0                            12
  CLUS_5                           0                             5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 50(XP21.1) MUTATED       50     12      9
  DEL PEAK 50(XP21.1) WILD-TYPE    108     74    157
D99V4, multiclass
        clus
vv       DEL PEAK 50(XP21.1) MUTATED DEL PEAK 50(XP21.1) WILD-TYPE
  CLUS_1                          50                           108
  CLUS_2                          12                            74
  CLUS_3                           9                           157
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 50(XP21.1) MUTATED        4     10      0      1      2      4
  DEL PEAK 50(XP21.1) WILD-TYPE     37     27     39     11     39     20
D99V5, multiclass
        clus
vv       DEL PEAK 50(XP21.1) MUTATED DEL PEAK 50(XP21.1) WILD-TYPE
  CLUS_1                           4                            37
  CLUS_2                          10                            27
  CLUS_3                           0                            39
  CLUS_4                           1                            11
  CLUS_5                           2                            39
  CLUS_6                           4                            20
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 50(XP21.1) MUTATED        8      8      3      2
  DEL PEAK 50(XP21.1) WILD-TYPE     59     59     40     15
D99V6, multiclass
        clus
vv       DEL PEAK 50(XP21.1) MUTATED DEL PEAK 50(XP21.1) WILD-TYPE
  CLUS_1                           8                            59
  CLUS_2                           8                            59
  CLUS_3                           3                            40
  CLUS_4                           2                            15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 50(XP21.1) MUTATED       72      5      6
  DEL PEAK 50(XP21.1) WILD-TYPE    152    145    139
D99V7, multiclass
        clus
vv       DEL PEAK 50(XP21.1) MUTATED DEL PEAK 50(XP21.1) WILD-TYPE
  CLUS_1                          72                           152
  CLUS_2                           5                           145
  CLUS_3                           6                           139
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 50(XP21.1) MUTATED       61     17      5
  DEL PEAK 50(XP21.1) WILD-TYPE    102    196    138
D99V8, multiclass
        clus
vv       DEL PEAK 50(XP21.1) MUTATED DEL PEAK 50(XP21.1) WILD-TYPE
  CLUS_1                          61                           102
  CLUS_2                          17                           196
  CLUS_3                           5                           138
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 50(XP21.1) MUTATED        8     64      9
  DEL PEAK 50(XP21.1) WILD-TYPE    133    155    146
D99V9, multiclass
        clus
vv       DEL PEAK 50(XP21.1) MUTATED DEL PEAK 50(XP21.1) WILD-TYPE
  CLUS_1                           8                           133
  CLUS_2                          64                           155
  CLUS_3                           9                           146
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 50(XP21.1) MUTATED        1     57      5     18
  DEL PEAK 50(XP21.1) WILD-TYPE     54    105    111    164
D99V10, multiclass
        clus
vv       DEL PEAK 50(XP21.1) MUTATED DEL PEAK 50(XP21.1) WILD-TYPE
  CLUS_1                           1                            54
  CLUS_2                          57                           105
  CLUS_3                           5                           111
  CLUS_4                          18                           164
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 50(XP21.1) MUTATED       10     44     18
  DEL PEAK 50(XP21.1) WILD-TYPE    111    133     76
D99V11, multiclass
        clus
vv       DEL PEAK 50(XP21.1) MUTATED DEL PEAK 50(XP21.1) WILD-TYPE
  CLUS_1                          10                           111
  CLUS_2                          44                           133
  CLUS_3                          18                            76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 50(XP21.1) MUTATED       42      9     21
  DEL PEAK 50(XP21.1) WILD-TYPE    129     99     92
D99V12, multiclass
        clus
vv       DEL PEAK 50(XP21.1) MUTATED DEL PEAK 50(XP21.1) WILD-TYPE
  CLUS_1                          42                           129
  CLUS_2                           9                            99
  CLUS_3                          21                            92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
