Clinical Features	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1q22	17 (19%)	73	0.01015	1	0.00052999	0.176	0.00264	0.816	0.00018	0.0614	0.11636	1	0.15726	1	0.076279	1	0.096539	1
amp_4p16.3	41 (46%)	49	0.00226	0.707	0.54728	1	0.01309	1	0.0056199	1	0.4888	1	0.04621	1	0.56129	1	0.38699	1
amp_4q35.1	29 (32%)	61	2e-05	0.00702	0.19569	1	0.00077999	0.256	0.00080999	0.265	0.056709	1	0.00074999	0.247	0.17807	1	0.00258	0.802
amp_5p15.33	65 (72%)	25	9.9999e-06	0.0036	0.88164	1	0.0099099	1	0.00085999	0.28	0.04427	1	0.18089	1	0.11188	1	0.059329	1
amp_5q35.3	63 (70%)	27	9.9999e-06	0.0036	0.00139	0.446	9.9999e-06	0.0036	9.9999e-06	0.0036	0.0065199	1	0.0466	1	0.02576	1	0.16074	1
amp_6p21.31	19 (21%)	71	0.12639	1	0.7978	1	0.081319	1	1	1	0.1393	1	0.02676	1	0.14745	1	0.0057599	1
amp_6q24.3	19 (21%)	71	0.0087999	1	0.90951	1	0.04748	1	0.93466	1	0.6683	1	0.23016	1	0.81585	1	0.056339	1
amp_7p22.1	54 (60%)	36	0.0080799	1	0.48436	1	0.0077199	1	0.03327	1	0.57209	1	0.49161	1	0.43495	1	0.69639	1
amp_9q31.3	34 (38%)	56	0.00012	0.0412	0.02019	1	0.02751	1	0.01936	1	0.054309	1	0.19895	1	0.04108	1	0.158	1
amp_12q14.1	70 (78%)	20	3e-05	0.0104	0.28284	1	0.02219	1	0.00191	0.605	0.45956	1	0.48919	1	0.076929	1	0.19585	1
amp_14q11.2	27 (30%)	63	0.00011	0.0378	0.01214	1	5e-05	0.0173	2e-05	0.00702	0.00043	0.144	0.0069299	1	0.00021	0.0712	0.0053999	1
amp_16p13.3	50 (56%)	40	9.9999e-06	0.0036	0.26103	1	0.00016	0.0547	9.9999e-06	0.0036	0.077779	1	0.0091499	1	0.01564	1	0.04689	1
amp_16q22.1	56 (62%)	34	9.9999e-06	0.0036	0.36983	1	0.02795	1	0.00024	0.0811	0.066249	1	0.02294	1	0.03856	1	0.40157	1
amp_16q24.2	49 (54%)	41	9.9999e-06	0.0036	0.02674	1	0.00026	0.0876	9.9999e-06	0.0036	0.063549	1	0.00283	0.866	0.02881	1	0.04969	1
amp_17q25.3	18 (20%)	72	0.1065	1	0.68947	1	0.127	1	0.67107	1	0.39688	1	0.69246	1	0.53907	1	0.91528	1
amp_19p13.12	58 (64%)	32	0.00104	0.337	0.03492	1	0.002	0.63	0.00045	0.15	0.32422	1	0.48127	1	0.2706	1	0.54028	1
amp_19q12	56 (62%)	34	0.0029	0.884	0.02004	1	0.00215	0.675	0.00096999	0.315	0.19575	1	0.25157	1	0.12828	1	0.40701	1
amp_xp11.22	49 (54%)	41	8.9999e-05	0.031	0.92029	1	0.03306	1	0.096589	1	0.76126	1	0.14494	1	0.8752	1	0.0086199	1
amp_xq28	46 (51%)	44	0.00018	0.0614	0.75578	1	0.0087399	1	0.01181	1	0.51347	1	0.2633	1	0.73285	1	0.04335	1
del_1p36.23	37 (41%)	53	0.0301	1	0.01159	1	0.13855	1	0.0096799	1	0.95541	1	0.68574	1	0.66817	1	0.73377	1
del_1q43	18 (20%)	72	0.1105	1	0.04511	1	0.58963	1	0.1386	1	0.52629	1	0.55009	1	0.65986	1	0.53842	1
del_2q22.1	18 (20%)	72	0.00278	0.853	0.00316	0.961	0.23904	1	0.090299	1	0.31442	1	0.66479	1	0.38635	1	0.70231	1
del_2q37.3	21 (23%)	69	0.00273	0.841	0.02614	1	0.29575	1	0.091639	1	0.4811	1	0.52471	1	0.66207	1	0.96734	1
del_3q13.31	23 (26%)	67	0.02327	1	0.30358	1	0.01319	1	0.087719	1	0.26998	1	0.37176	1	0.083899	1	0.075979	1
del_4q34.3	25 (28%)	65	0.00497	1	0.064289	1	0.02156	1	0.0379	1	0.03798	1	0.0421	1	0.11639	1	0.059999	1
del_4q35.1	28 (31%)	62	0.04084	1	0.03972	1	0.095909	1	0.077389	1	0.31976	1	0.13859	1	0.55747	1	0.17248	1
del_6p24.3	20 (22%)	70	0.00335	1	0.91957	1	0.62336	1	0.48179	1	1	1	0.10079	1	0.8775	1	0.082219	1
del_6q26	21 (23%)	69	0.01848	1	0.86215	1	0.32247	1	0.30659	1	0.50527	1	0.34525	1	0.41933	1	0.02845	1
del_7q32.3	9 (10%)	81	0.15306	1	0.02837	1	0.17535	1	0.16711	1	0.89547	1	0.73745	1	1	1	0.863	1
del_9p23	24 (27%)	66	0.00076999	0.253	0.0080399	1	4e-05	0.0139	0.00152	0.485	0.0079199	1	0.17238	1	0.04938	1	0.18172	1
del_9p21.3	27 (30%)	63	5e-04	0.166	0.00364	1	2e-05	0.00702	0.00052999	0.176	0.01748	1	0.18057	1	0.072709	1	0.15268	1
del_10q23.1	11 (12%)	79	0.04338	1	0.25897	1	0.23345	1	0.7491	1	1	1	0.96916	1	0.88942	1	0.77496	1
del_11p15.5	27 (30%)	63	0.00192	0.607	0.01959	1	0.088319	1	0.0333	1	0.12466	1	0.59713	1	0.22391	1	0.7355	1
del_11q14.1	25 (28%)	65	0.00035	0.118	0.0068499	1	0.21745	1	0.34958	1	0.27931	1	0.74091	1	0.44281	1	0.87068	1
del_12q14.2	5 (6%)	85	0.22965	1	0.22062	1	0.17666	1	0.00107	0.346	0.59615	1	0.30508	1	0.1041	1	0.00146	0.467
del_13q14.2	42 (47%)	48	0.00262	0.812	0.087389	1	0.33283	1	0.55654	1	1	1	0.53145	1	0.91389	1	0.62871	1
del_14q21.2	20 (22%)	70	0.01118	1	0.92371	1	0.30289	1	0.28453	1	0.36839	1	0.73634	1	0.20541	1	0.78825	1
del_16p13.3	7 (8%)	83	0.11868	1	0.55785	1	0.54141	1	0.0080599	1	0.02374	1	0.60003	1	0.04569	1	0.58476	1
del_16q23.1	9 (10%)	81	0.04269	1	0.65826	1	0.01686	1	0.078259	1	0.14121	1	0.59064	1	0.29826	1	0.3635	1
del_17q11.2	24 (27%)	66	0.00367	1	0.0054399	1	0.10361	1	0.10626	1	0.2597	1	0.0185	1	0.23527	1	0.062289	1
del_17q21.31	26 (29%)	64	0.00244	0.761	0.0092299	1	0.078189	1	0.04722	1	0.03463	1	0.00479	1	0.04601	1	0.093099	1
del_17q24.2	24 (27%)	66	0.00111	0.357	0.01349	1	0.15974	1	0.04039	1	0.15661	1	0.0272	1	0.15785	1	0.31747	1
del_18q21.2	36 (40%)	54	0.075159	1	0.3215	1	0.82502	1	1	1	0.49389	1	0.91457	1	0.76086	1	0.098179	1
del_20p12.1	12 (13%)	78	0.00188	0.598	0.64197	1	0.04286	1	0.02622	1	0.0063099	1	0.51564	1	0.01438	1	0.58159	1
del_22q12.1	50 (56%)	40	0.03975	1	0.13889	1	0.74634	1	0.18332	1	0.63748	1	0.88045	1	0.51235	1	0.81389	1