Correlation between gene mutation status and molecular subtypes
Adrenocortical Carcinoma (Primary solid tumor)
15 July 2014  |  analyses__2014_07_15
Maintainer Information
Citation Information
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2014): Correlation between gene mutation status and molecular subtypes. Broad Institute of MIT and Harvard. doi:10.7908/C1QC026W
Overview
Introduction

This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.

Summary

Testing the association between mutation status of 142 genes and 8 molecular subtypes across 64 patients, no significant finding detected with P value < 0.05 and Q value < 0.25.

  • No gene mutations related to molecuar subtypes.

Results
Overview of the results

Table 1.  Get Full Table Overview of the association between mutation status of 142 genes and 8 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, no significant finding detected.

Clinical
Features
CN
CNMF
METHLYATION
CNMF
MRNASEQ
CNMF
MRNASEQ
CHIERARCHICAL
MIRSEQ
CNMF
MIRSEQ
CHIERARCHICAL
MIRSEQ
MATURE
CNMF
MIRSEQ
MATURE
CHIERARCHICAL
nMutated (%) nWild-Type Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test
ZFPM1 26 (41%) 38 0.181
(1.00)
0.81
(1.00)
0.335
(1.00)
0.819
(1.00)
0.68
(1.00)
0.838
(1.00)
0.492
(1.00)
0.938
(1.00)
LACTB 20 (31%) 44 0.117
(1.00)
0.682
(1.00)
1
(1.00)
0.56
(1.00)
0.454
(1.00)
0.743
(1.00)
0.314
(1.00)
0.756
(1.00)
CCDC102A 17 (27%) 47 0.131
(1.00)
0.936
(1.00)
0.911
(1.00)
0.758
(1.00)
0.439
(1.00)
0.476
(1.00)
0.687
(1.00)
0.145
(1.00)
ZNF517 13 (20%) 51 0.652
(1.00)
0.962
(1.00)
0.884
(1.00)
1
(1.00)
0.236
(1.00)
0.667
(1.00)
0.799
(1.00)
0.427
(1.00)
TOR3A 12 (19%) 52 0.273
(1.00)
0.0221
(1.00)
0.638
(1.00)
0.0151
(1.00)
1
(1.00)
0.868
(1.00)
0.828
(1.00)
0.662
(1.00)
USP42 16 (25%) 48 0.725
(1.00)
0.0487
(1.00)
1
(1.00)
0.96
(1.00)
0.567
(1.00)
0.839
(1.00)
0.748
(1.00)
0.289
(1.00)
CLDN23 10 (16%) 54 0.263
(1.00)
0.247
(1.00)
0.0237
(1.00)
0.181
(1.00)
0.0905
(1.00)
0.19
(1.00)
0.108
(1.00)
0.322
(1.00)
TP53 13 (20%) 51 0.0216
(1.00)
0.775
(1.00)
0.0201
(1.00)
0.666
(1.00)
0.018
(1.00)
0.638
(1.00)
0.0416
(1.00)
0.192
(1.00)
KCNK17 9 (14%) 55 0.103
(1.00)
0.0379
(1.00)
0.0944
(1.00)
0.00996
(1.00)
1
(1.00)
0.522
(1.00)
0.474
(1.00)
0.417
(1.00)
LZTR1 6 (9%) 58 0.224
(1.00)
0.806
(1.00)
0.0894
(1.00)
0.194
(1.00)
0.417
(1.00)
0.0137
(1.00)
0.445
(1.00)
0.0854
(1.00)
APOE 7 (11%) 57 0.17
(1.00)
0.62
(1.00)
0.0669
(1.00)
0.453
(1.00)
0.279
(1.00)
0.822
(1.00)
0.027
(1.00)
0.825
(1.00)
CCDC105 7 (11%) 57 0.169
(1.00)
0.00859
(1.00)
0.881
(1.00)
0.714
(1.00)
1
(1.00)
0.0509
(1.00)
0.859
(1.00)
0.326
(1.00)
RINL 8 (12%) 56 0.146
(1.00)
0.701
(1.00)
0.509
(1.00)
0.294
(1.00)
0.882
(1.00)
0.166
(1.00)
0.438
(1.00)
0.187
(1.00)
MAL2 12 (19%) 52 0.782
(1.00)
0.303
(1.00)
0.199
(1.00)
0.518
(1.00)
0.123
(1.00)
0.277
(1.00)
0.644
(1.00)
0.321
(1.00)
LRIG1 17 (27%) 47 0.654
(1.00)
0.894
(1.00)
1
(1.00)
0.781
(1.00)
0.186
(1.00)
0.496
(1.00)
0.696
(1.00)
0.874
(1.00)
C19ORF10 8 (12%) 56 0.633
(1.00)
0.355
(1.00)
0.235
(1.00)
0.109
(1.00)
0.55
(1.00)
0.86
(1.00)
0.287
(1.00)
0.761
(1.00)
C10ORF95 7 (11%) 57 0.172
(1.00)
0.707
(1.00)
0.557
(1.00)
0.817
(1.00)
0.75
(1.00)
0.491
(1.00)
0.862
(1.00)
0.505
(1.00)
SYT8 9 (14%) 55 0.428
(1.00)
0.403
(1.00)
0.0346
(1.00)
0.147
(1.00)
1
(1.00)
0.216
(1.00)
1
(1.00)
0.643
(1.00)
IDUA 9 (14%) 55 0.545
(1.00)
0.894
(1.00)
0.345
(1.00)
0.54
(1.00)
0.122
(1.00)
0.457
(1.00)
0.196
(1.00)
0.483
(1.00)
HHIPL1 8 (12%) 56 0.126
(1.00)
0.285
(1.00)
0.358
(1.00)
0.204
(1.00)
0.176
(1.00)
0.786
(1.00)
0.289
(1.00)
0.201
(1.00)
ASPDH 8 (12%) 56 0.306
(1.00)
0.644
(1.00)
0.0203
(1.00)
0.344
(1.00)
0.476
(1.00)
0.0277
(1.00)
0.368
(1.00)
0.0793
(1.00)
C1ORF106 9 (14%) 55 0.77
(1.00)
0.434
(1.00)
0.343
(1.00)
0.861
(1.00)
0.478
(1.00)
0.689
(1.00)
0.616
(1.00)
1
(1.00)
THEM4 6 (9%) 58 0.00358
(1.00)
0.734
(1.00)
0.437
(1.00)
0.886
(1.00)
0.245
(1.00)
0.0938
(1.00)
0.25
(1.00)
0.111
(1.00)
CTNNB1 7 (11%) 57 1
(1.00)
0.167
(1.00)
0.0194
(1.00)
0.0181
(1.00)
0.00174
(1.00)
0.169
(1.00)
0.0272
(1.00)
0.48
(1.00)
GDF1 5 (8%) 59 0.396
(1.00)
0.312
(1.00)
0.362
(1.00)
0.254
(1.00)
0.0896
(1.00)
0.54
(1.00)
0.0192
(1.00)
0.713
(1.00)
TSC22D2 8 (12%) 56 0.349
(1.00)
0.528
(1.00)
0.815
(1.00)
0.942
(1.00)
0.883
(1.00)
0.426
(1.00)
1
(1.00)
0.334
(1.00)
ZAR1 11 (17%) 53 0.175
(1.00)
0.667
(1.00)
0.602
(1.00)
0.802
(1.00)
0.72
(1.00)
1
(1.00)
0.52
(1.00)
0.715
(1.00)
RGS9BP 8 (12%) 56 0.295
(1.00)
0.585
(1.00)
1
(1.00)
0.888
(1.00)
0.335
(1.00)
0.962
(1.00)
0.884
(1.00)
0.343
(1.00)
OPRD1 12 (19%) 52 0.824
(1.00)
0.388
(1.00)
0.797
(1.00)
0.961
(1.00)
0.34
(1.00)
0.631
(1.00)
0.469
(1.00)
0.466
(1.00)
C16ORF3 6 (9%) 58 0.904
(1.00)
0.00079
(0.784)
0.799
(1.00)
0.831
(1.00)
0.594
(1.00)
1
(1.00)
0.698
(1.00)
0.711
(1.00)
FPGS 6 (9%) 58 1
(1.00)
1
(1.00)
0.614
(1.00)
0.614
(1.00)
0.0905
(1.00)
0.624
(1.00)
0.675
(1.00)
0.787
(1.00)
PLIN5 5 (8%) 59 0.561
(1.00)
0.693
(1.00)
0.799
(1.00)
0.542
(1.00)
0.35
(1.00)
0.308
(1.00)
0.129
(1.00)
0.321
(1.00)
IRX3 5 (8%) 59 0.333
(1.00)
0.733
(1.00)
0.52
(1.00)
0.193
(1.00)
0.246
(1.00)
0.779
(1.00)
0.25
(1.00)
0.0204
(1.00)
TRIOBP 12 (19%) 52 0.821
(1.00)
0.176
(1.00)
1
(1.00)
0.128
(1.00)
0.902
(1.00)
0.93
(1.00)
0.665
(1.00)
0.746
(1.00)
KRTAP4-5 5 (8%) 59 0.769
(1.00)
0.313
(1.00)
1
(1.00)
0.886
(1.00)
1
(1.00)
0.84
(1.00)
1
(1.00)
0.894
(1.00)
ATXN1 10 (16%) 54 0.408
(1.00)
0.129
(1.00)
0.234
(1.00)
0.627
(1.00)
0.324
(1.00)
0.852
(1.00)
0.41
(1.00)
0.851
(1.00)
ZNF628 7 (11%) 57 0.305
(1.00)
0.892
(1.00)
0.351
(1.00)
0.122
(1.00)
0.125
(1.00)
0.494
(1.00)
0.0953
(1.00)
0.725
(1.00)
WDR34 5 (8%) 59 0.674
(1.00)
0.772
(1.00)
0.931
(1.00)
0.834
(1.00)
0.843
(1.00)
0.523
(1.00)
1
(1.00)
0.396
(1.00)
BTBD11 6 (9%) 58 1
(1.00)
0.235
(1.00)
0.48
(1.00)
1
(1.00)
0.493
(1.00)
0.165
(1.00)
0.491
(1.00)
0.213
(1.00)
GARS 21 (33%) 43 0.236
(1.00)
0.0685
(1.00)
0.433
(1.00)
0.063
(1.00)
0.238
(1.00)
0.339
(1.00)
0.0989
(1.00)
0.342
(1.00)
ZNF598 13 (20%) 51 0.446
(1.00)
0.377
(1.00)
0.534
(1.00)
1
(1.00)
1
(1.00)
0.215
(1.00)
1
(1.00)
0.162
(1.00)
BHLHE22 5 (8%) 59 0.391
(1.00)
0.0641
(1.00)
0.104
(1.00)
0.83
(1.00)
0.595
(1.00)
0.881
(1.00)
0.698
(1.00)
0.785
(1.00)
PTPLA 4 (6%) 60 0.441
(1.00)
0.292
(1.00)
0.332
(1.00)
0.474
(1.00)
0.79
(1.00)
1
(1.00)
0.21
(1.00)
0.583
(1.00)
CD320 4 (6%) 60 0.935
(1.00)
0.897
(1.00)
0.737
(1.00)
0.684
(1.00)
0.416
(1.00)
0.221
(1.00)
0.175
(1.00)
0.173
(1.00)
KIAA1984 4 (6%) 60 0.252
(1.00)
0.735
(1.00)
0.126
(1.00)
0.0463
(1.00)
0.0364
(1.00)
0.58
(1.00)
0.0617
(1.00)
0.669
(1.00)
TPO 12 (19%) 52 0.532
(1.00)
0.305
(1.00)
0.214
(1.00)
0.159
(1.00)
0.14
(1.00)
0.319
(1.00)
0.28
(1.00)
0.122
(1.00)
AATK 6 (9%) 58 0.115
(1.00)
0.316
(1.00)
0.36
(1.00)
0.251
(1.00)
1
(1.00)
0.506
(1.00)
1
(1.00)
0.455
(1.00)
PANK2 5 (8%) 59 0.735
(1.00)
0.428
(1.00)
0.114
(1.00)
0.108
(1.00)
0.441
(1.00)
0.342
(1.00)
0.594
(1.00)
0.323
(1.00)
SNED1 6 (9%) 58 0.394
(1.00)
0.594
(1.00)
0.212
(1.00)
0.455
(1.00)
0.0442
(1.00)
0.649
(1.00)
0.0459
(1.00)
0.321
(1.00)
CCDC150 4 (6%) 60 0.441
(1.00)
0.808
(1.00)
0.265
(1.00)
0.197
(1.00)
0.417
(1.00)
0.182
(1.00)
0.442
(1.00)
0.143
(1.00)
ERCC2 10 (16%) 54 0.756
(1.00)
0.196
(1.00)
0.51
(1.00)
0.149
(1.00)
0.671
(1.00)
0.239
(1.00)
0.29
(1.00)
0.0884
(1.00)
RREB1 5 (8%) 59 0.736
(1.00)
0.807
(1.00)
0.612
(1.00)
1
(1.00)
0.675
(1.00)
0.504
(1.00)
0.675
(1.00)
0.554
(1.00)
RNF39 5 (8%) 59 0.427
(1.00)
0.311
(1.00)
0.184
(1.00)
0.267
(1.00)
0.167
(1.00)
0.695
(1.00)
0.351
(1.00)
0.553
(1.00)
SEMA5B 8 (12%) 56 0.39
(1.00)
0.35
(1.00)
0.399
(1.00)
0.274
(1.00)
0.853
(1.00)
0.337
(1.00)
0.637
(1.00)
0.666
(1.00)
TAF5 4 (6%) 60 0.937
(1.00)
0.733
(1.00)
1
(1.00)
0.884
(1.00)
0.0212
(1.00)
0.121
(1.00)
0.0195
(1.00)
0.197
(1.00)
SARM1 7 (11%) 57 0.0301
(1.00)
0.435
(1.00)
0.275
(1.00)
0.0285
(1.00)
0.113
(1.00)
0.754
(1.00)
0.046
(1.00)
0.917
(1.00)
PRSS27 3 (5%) 61 0.797
(1.00)
0.909
(1.00)
0.609
(1.00)
0.108
(1.00)
0.141
(1.00)
1
(1.00)
0.206
(1.00)
1
(1.00)
TMEM189 4 (6%) 60 0.162
(1.00)
NOXA1 5 (8%) 59 0.15
(1.00)
0.426
(1.00)
0.219
(1.00)
0.476
(1.00)
0.302
(1.00)
0.341
(1.00)
0.314
(1.00)
0.328
(1.00)
LRP11 7 (11%) 57 0.0406
(1.00)
0.0727
(1.00)
0.799
(1.00)
0.541
(1.00)
0.593
(1.00)
0.936
(1.00)
0.695
(1.00)
0.95
(1.00)
RNF149 4 (6%) 60 0.376
(1.00)
0.0356
(1.00)
0.36
(1.00)
0.616
(1.00)
0.329
(1.00)
0.353
(1.00)
0.343
(1.00)
0.444
(1.00)
DMKN 3 (5%) 61 0.801
(1.00)
0.292
(1.00)
0.611
(1.00)
0.474
(1.00)
0.00831
(1.00)
0.56
(1.00)
0.0101
(1.00)
0.823
(1.00)
FANK1 4 (6%) 60 0.936
(1.00)
0.35
(1.00)
0.855
(1.00)
0.328
(1.00)
0.79
(1.00)
0.227
(1.00)
1
(1.00)
0.172
(1.00)
MUC5B 22 (34%) 42 1
(1.00)
0.572
(1.00)
0.676
(1.00)
0.731
(1.00)
0.817
(1.00)
0.631
(1.00)
0.591
(1.00)
0.846
(1.00)
PABPC1 4 (6%) 60 0.415
(1.00)
GLTPD2 6 (9%) 58 0.0714
(1.00)
0.844
(1.00)
0.883
(1.00)
0.453
(1.00)
0.553
(1.00)
0.51
(1.00)
0.858
(1.00)
0.597
(1.00)
MEN1 5 (8%) 59 0.0955
(1.00)
0.0433
(1.00)
0.0127
(1.00)
0.00613
(1.00)
0.215
(1.00)
0.0387
(1.00)
0.351
(1.00)
0.00889
(1.00)
SRPX 3 (5%) 61 0.894
(1.00)
0.125
(1.00)
0.468
(1.00)
1
(1.00)
0.789
(1.00)
0.789
(1.00)
1
(1.00)
0.822
(1.00)
MAP1S 5 (8%) 59 0.276
(1.00)
0.384
(1.00)
0.349
(1.00)
1
(1.00)
1
(1.00)
0.882
(1.00)
0.842
(1.00)
1
(1.00)
SCRT1 3 (5%) 61 0.799
(1.00)
0.425
(1.00)
0.609
(1.00)
0.639
(1.00)
0.441
(1.00)
0.71
(1.00)
0.592
(1.00)
0.875
(1.00)
OBSCN 20 (31%) 44 0.657
(1.00)
0.261
(1.00)
0.458
(1.00)
0.624
(1.00)
0.0945
(1.00)
0.78
(1.00)
0.196
(1.00)
0.73
(1.00)
IER5 3 (5%) 61 0.369
(1.00)
TNIP2 5 (8%) 59 0.673
(1.00)
0.625
(1.00)
0.735
(1.00)
0.887
(1.00)
1
(1.00)
0.402
(1.00)
1
(1.00)
0.235
(1.00)
NOTCH2 7 (11%) 57 0.304
(1.00)
0.798
(1.00)
0.35
(1.00)
0.0338
(1.00)
0.00835
(1.00)
0.417
(1.00)
0.00893
(1.00)
0.325
(1.00)
RASIP1 7 (11%) 57 0.63
(1.00)
0.676
(1.00)
0.0391
(1.00)
0.159
(1.00)
0.022
(1.00)
0.686
(1.00)
0.0377
(1.00)
0.748
(1.00)
NMU 5 (8%) 59 0.821
(1.00)
1
(1.00)
0.0485
(1.00)
0.639
(1.00)
1
(1.00)
0.506
(1.00)
1
(1.00)
0.455
(1.00)
VARS 6 (9%) 58 0.445
(1.00)
0.437
(1.00)
0.185
(1.00)
0.0818
(1.00)
0.854
(1.00)
0.861
(1.00)
0.34
(1.00)
0.762
(1.00)
SHOX2 3 (5%) 61 0.334
(1.00)
HSD17B1 4 (6%) 60 1
(1.00)
0.108
(1.00)
1
(1.00)
0.0127
(1.00)
1
(1.00)
0.84
(1.00)
1
(1.00)
0.762
(1.00)
COQ2 5 (8%) 59 0.296
(1.00)
0.765
(1.00)
0.361
(1.00)
0.616
(1.00)
1
(1.00)
0.669
(1.00)
1
(1.00)
0.762
(1.00)
KNDC1 10 (16%) 54 0.785
(1.00)
0.129
(1.00)
0.141
(1.00)
0.372
(1.00)
0.288
(1.00)
0.357
(1.00)
0.228
(1.00)
0.749
(1.00)
AR 4 (6%) 60 0.32
(1.00)
0.426
(1.00)
0.61
(1.00)
0.472
(1.00)
0.445
(1.00)
1
(1.00)
0.596
(1.00)
1
(1.00)
KCTD3 4 (6%) 60 0.414
(1.00)
FZD1 3 (5%) 61 0.407
(1.00)
ZC3H12D 3 (5%) 61 0.0033
(1.00)
KRTAP5-5 5 (8%) 59 0.362
(1.00)
1
(1.00)
0.219
(1.00)
0.216
(1.00)
0.444
(1.00)
0.18
(1.00)
0.593
(1.00)
0.056
(1.00)
AKAP2 4 (6%) 60 0.0745
(1.00)
0.475
(1.00)
0.738
(1.00)
0.316
(1.00)
0.673
(1.00)
0.468
(1.00)
0.341
(1.00)
0.647
(1.00)
KBTBD13 9 (14%) 55 0.584
(1.00)
0.107
(1.00)
0.734
(1.00)
0.135
(1.00)
1
(1.00)
0.358
(1.00)
1
(1.00)
0.78
(1.00)
SPIRE2 3 (5%) 61 0.302
(1.00)
0.0267
(1.00)
1
(1.00)
0.824
(1.00)
1
(1.00)
0.708
(1.00)
1
(1.00)
0.875
(1.00)
NPTX1 3 (5%) 61 0.337
(1.00)
1
(1.00)
1
(1.00)
0.825
(1.00)
0.587
(1.00)
0.708
(1.00)
0.43
(1.00)
0.657
(1.00)
ADAD2 4 (6%) 60 0.251
(1.00)
0.574
(1.00)
0.738
(1.00)
0.317
(1.00)
0.0206
(1.00)
0.54
(1.00)
0.0196
(1.00)
0.837
(1.00)
SEZ6L2 8 (12%) 56 0.355
(1.00)
0.598
(1.00)
0.882
(1.00)
1
(1.00)
0.459
(1.00)
0.584
(1.00)
0.456
(1.00)
0.808
(1.00)
NEFH 7 (11%) 57 0.0362
(1.00)
0.157
(1.00)
0.0236
(1.00)
0.00825
(1.00)
0.168
(1.00)
0.521
(1.00)
0.35
(1.00)
0.158
(1.00)
DLEU7 3 (5%) 61 0.568
(1.00)
AMDHD1 11 (17%) 53 0.0266
(1.00)
0.721
(1.00)
0.569
(1.00)
0.185
(1.00)
0.236
(1.00)
0.888
(1.00)
0.0625
(1.00)
0.954
(1.00)
GLTSCR2 5 (8%) 59 0.22
(1.00)
0.806
(1.00)
0.264
(1.00)
0.197
(1.00)
1
(1.00)
0.623
(1.00)
0.251
(1.00)
0.589
(1.00)
PLEC 13 (20%) 51 0.612
(1.00)
0.713
(1.00)
0.194
(1.00)
0.681
(1.00)
0.673
(1.00)
0.604
(1.00)
0.396
(1.00)
0.471
(1.00)
MAP7 3 (5%) 61 1
(1.00)
0.697
(1.00)
1
(1.00)
0.825
(1.00)
0.588
(1.00)
0.708
(1.00)
0.429
(1.00)
0.655
(1.00)
DSPP 10 (16%) 54 0.928
(1.00)
0.064
(1.00)
1
(1.00)
0.516
(1.00)
0.515
(1.00)
0.574
(1.00)
0.313
(1.00)
0.33
(1.00)
CRIPAK 10 (16%) 54 0.201
(1.00)
0.928
(1.00)
0.474
(1.00)
0.836
(1.00)
0.807
(1.00)
0.359
(1.00)
0.719
(1.00)
0.287
(1.00)
PRKAR1A 6 (9%) 58 0.487
(1.00)
1
(1.00)
0.277
(1.00)
0.457
(1.00)
0.0865
(1.00)
0.564
(1.00)
0.174
(1.00)
0.151
(1.00)
CYP4A22 4 (6%) 60 0.113
(1.00)
0.622
(1.00)
0.163
(1.00)
0.507
(1.00)
0.246
(1.00)
0.207
(1.00)
0.249
(1.00)
0.837
(1.00)
NOM1 6 (9%) 58 1
(1.00)
0.233
(1.00)
0.93
(1.00)
1
(1.00)
1
(1.00)
0.742
(1.00)
0.84
(1.00)
0.276
(1.00)
RNF135 3 (5%) 61 0.894
(1.00)
C12ORF65 3 (5%) 61 0.371
(1.00)
0.0354
(1.00)
0.113
(1.00)
0.0623
(1.00)
0.445
(1.00)
0.563
(1.00)
0.593
(1.00)
0.735
(1.00)
HLA-B 6 (9%) 58 0.293
(1.00)
0.775
(1.00)
0.883
(1.00)
1
(1.00)
0.653
(1.00)
0.274
(1.00)
0.535
(1.00)
0.319
(1.00)
CSGALNACT2 3 (5%) 61 0.895
(1.00)
0.0256
(1.00)
0.691
(1.00)
0.823
(1.00)
0.584
(1.00)
0.876
(1.00)
0.43
(1.00)
0.933
(1.00)
UQCRFS1 5 (8%) 59 0.508
(1.00)
0.502
(1.00)
1
(1.00)
0.885
(1.00)
0.49
(1.00)
0.187
(1.00)
0.494
(1.00)
0.0508
(1.00)
PDCD6 3 (5%) 61 0.302
(1.00)
0.699
(1.00)
1
(1.00)
0.632
(1.00)
1
(1.00)
0.696
(1.00)
PTX4 3 (5%) 61 0.568
(1.00)
1
(1.00)
0.612
(1.00)
0.217
(1.00)
0.444
(1.00)
1
(1.00)
0.595
(1.00)
0.392
(1.00)
SGK223 3 (5%) 61 0.895
(1.00)
POLRMT 4 (6%) 60 0.508
(1.00)
0.0363
(1.00)
0.327
(1.00)
0.0737
(1.00)
0.189
(1.00)
0.353
(1.00)
0.125
(1.00)
0.443
(1.00)
CACNA1D 3 (5%) 61 0.566
(1.00)
NF1 7 (11%) 57 0.152
(1.00)
0.904
(1.00)
0.41
(1.00)
0.268
(1.00)
0.342
(1.00)
0.853
(1.00)
0.0999
(1.00)
0.527
(1.00)
RGMB 6 (9%) 58 0.581
(1.00)
ADAMTS7 4 (6%) 60 0.14
(1.00)
0.575
(1.00)
0.0732
(1.00)
0.465
(1.00)
0.061
(1.00)
0.351
(1.00)
0.038
(1.00)
0.288
(1.00)
CLIC6 6 (9%) 58 0.962
(1.00)
1
(1.00)
0.665
(1.00)
0.193
(1.00)
0.246
(1.00)
0.579
(1.00)
0.248
(1.00)
0.759
(1.00)
EMR2 4 (6%) 60 0.375
(1.00)
0.314
(1.00)
0.473
(1.00)
0.614
(1.00)
0.674
(1.00)
0.207
(1.00)
0.676
(1.00)
0.839
(1.00)
PCDHB13 5 (8%) 59 0.513
(1.00)
0.139
(1.00)
0.107
(1.00)
0.256
(1.00)
0.542
(1.00)
0.0566
(1.00)
0.801
(1.00)
0.0126
(1.00)
MTFMT 3 (5%) 61 1
(1.00)
SPTAN1 3 (5%) 61 0.244
(1.00)
HLA-A 3 (5%) 61 1
(1.00)
1
(1.00)
0.854
(1.00)
0.219
(1.00)
1
(1.00)
0.445
(1.00)
1
(1.00)
0.215
(1.00)
ASB16 6 (9%) 58 0.743
(1.00)
0.945
(1.00)
0.614
(1.00)
0.885
(1.00)
0.543
(1.00)
0.778
(1.00)
0.802
(1.00)
0.959
(1.00)
GPRIN2 9 (14%) 55 0.591
(1.00)
0.37
(1.00)
0.65
(1.00)
0.428
(1.00)
0.582
(1.00)
0.801
(1.00)
0.381
(1.00)
0.647
(1.00)
HNRNPCL1 3 (5%) 61 0.336
(1.00)
BTNL9 4 (6%) 60 0.416
(1.00)
0.0962
(1.00)
0.141
(1.00)
0.0618
(1.00)
0.142
(1.00)
1
(1.00)
0.209
(1.00)
1
(1.00)
KCNJ11 4 (6%) 60 0.0135
(1.00)
0.624
(1.00)
0.434
(1.00)
0.14
(1.00)
0.132
(1.00)
0.0498
(1.00)
0.174
(1.00)
0.211
(1.00)
JMJD4 3 (5%) 61 0.8
(1.00)
LRRC4B 6 (9%) 58 0.188
(1.00)
0.189
(1.00)
0.0133
(1.00)
0.0708
(1.00)
0.174
(1.00)
0.0299
(1.00)
0.172
(1.00)
0.00974
(1.00)
OPLAH 3 (5%) 61 0.566
(1.00)
0.854
(1.00)
0.608
(1.00)
0.472
(1.00)
0.443
(1.00)
0.342
(1.00)
0.594
(1.00)
0.394
(1.00)
BAGE2 3 (5%) 61 0.895
(1.00)
MADCAM1 3 (5%) 61 0.481
(1.00)
0.696
(1.00)
1
(1.00)
0.199
(1.00)
1
(1.00)
0.136
(1.00)
CTBP2 3 (5%) 61 0.895
(1.00)
MSH3 4 (6%) 60 0.0176
(1.00)
0.7
(1.00)
0.335
(1.00)
1
(1.00)
0.3
(1.00)
0.442
(1.00)
0.314
(1.00)
0.495
(1.00)
ATN1 4 (6%) 60 0.13
(1.00)
0.853
(1.00)
0.855
(1.00)
1
(1.00)
0.791
(1.00)
0.79
(1.00)
1
(1.00)
0.823
(1.00)
FAM46A 3 (5%) 61 0.897
(1.00)
UTS2R 3 (5%) 61 0.162
(1.00)
0.699
(1.00)
0.69
(1.00)
0.824
(1.00)
0.586
(1.00)
0.791
(1.00)
0.428
(1.00)
0.823
(1.00)
SMG1 3 (5%) 61 0.164
(1.00)
0.125
(1.00)
0.143
(1.00)
0.0621
(1.00)
0.305
(1.00)
0.0256
(1.00)
0.316
(1.00)
0.188
(1.00)
FUCA1 3 (5%) 61 0.404
(1.00)
FEZ2 3 (5%) 61 0.477
(1.00)
0.348
(1.00)
0.179
(1.00)
0.825
(1.00)
0.209
(1.00)
0.709
(1.00)
0.133
(1.00)
0.658
(1.00)
GLI3 5 (8%) 59 0.737
(1.00)
0.407
(1.00)
1
(1.00)
0.885
(1.00)
0.134
(1.00)
0.399
(1.00)
0.176
(1.00)
0.0919
(1.00)
NOL9 4 (6%) 60 0.00202
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
0.789
(1.00)
0.559
(1.00)
1
(1.00)
0.733
(1.00)
'ZFPM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S1.  Gene #1: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
ZFPM1 MUTATED 10 7 2 6 1
ZFPM1 WILD-TYPE 11 12 6 2 5
'ZFPM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S2.  Gene #1: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
ZFPM1 MUTATED 6 4 4 6 2
ZFPM1 WILD-TYPE 7 4 10 8 5
'ZFPM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S3.  Gene #1: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
ZFPM1 MUTATED 8 1 7 6
ZFPM1 WILD-TYPE 9 7 7 10
'ZFPM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S4.  Gene #1: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
ZFPM1 MUTATED 8 6 2 6
ZFPM1 WILD-TYPE 8 10 3 12
'ZFPM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S5.  Gene #1: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
ZFPM1 MUTATED 10 6 6
ZFPM1 WILD-TYPE 16 6 12
'ZFPM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S6.  Gene #1: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
ZFPM1 MUTATED 5 9 2 5 1
ZFPM1 WILD-TYPE 8 10 6 9 1
'ZFPM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S7.  Gene #1: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
ZFPM1 MUTATED 10 7 5
ZFPM1 WILD-TYPE 17 6 11
'ZFPM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S8.  Gene #1: 'ZFPM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
ZFPM1 MUTATED 4 7 2 5 3 1
ZFPM1 WILD-TYPE 5 10 5 7 3 4
'LACTB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S9.  Gene #2: 'LACTB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
LACTB MUTATED 5 5 2 6 2
LACTB WILD-TYPE 16 14 6 2 4
'LACTB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S10.  Gene #2: 'LACTB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
LACTB MUTATED 2 3 5 4 3
LACTB WILD-TYPE 11 5 9 10 4
'LACTB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11.  Gene #2: 'LACTB MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
LACTB MUTATED 5 2 5 5
LACTB WILD-TYPE 12 6 9 11
'LACTB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S12.  Gene #2: 'LACTB MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
LACTB MUTATED 4 5 3 5
LACTB WILD-TYPE 12 11 2 13
'LACTB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S13.  Gene #2: 'LACTB MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
LACTB MUTATED 6 5 6
LACTB WILD-TYPE 20 7 12
'LACTB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S14.  Gene #2: 'LACTB MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
LACTB MUTATED 4 5 4 4 0
LACTB WILD-TYPE 9 14 4 10 2
'LACTB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S15.  Gene #2: 'LACTB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
LACTB MUTATED 6 6 5
LACTB WILD-TYPE 21 7 11
'LACTB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S16.  Gene #2: 'LACTB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
LACTB MUTATED 3 4 2 3 2 3
LACTB WILD-TYPE 6 13 5 9 4 2
'CCDC102A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 1

Table S17.  Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
CCDC102A MUTATED 4 7 0 3 3
CCDC102A WILD-TYPE 17 12 8 5 3
'CCDC102A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S18.  Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
CCDC102A MUTATED 3 2 4 4 3
CCDC102A WILD-TYPE 10 6 10 10 4
'CCDC102A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S19.  Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
CCDC102A MUTATED 4 3 4 5
CCDC102A WILD-TYPE 13 5 10 11
'CCDC102A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S20.  Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
CCDC102A MUTATED 4 4 1 7
CCDC102A WILD-TYPE 12 12 4 11
'CCDC102A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S21.  Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
CCDC102A MUTATED 7 2 7
CCDC102A WILD-TYPE 19 10 11
'CCDC102A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S22.  Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
CCDC102A MUTATED 2 6 4 4 0
CCDC102A WILD-TYPE 11 13 4 10 2
'CCDC102A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S23.  Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
CCDC102A MUTATED 7 3 6
CCDC102A WILD-TYPE 20 10 10
'CCDC102A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 1

Table S24.  Gene #3: 'CCDC102A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
CCDC102A MUTATED 0 6 3 3 1 3
CCDC102A WILD-TYPE 9 11 4 9 5 2
'ZNF517 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 1

Table S25.  Gene #4: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
ZNF517 MUTATED 5 5 0 2 1
ZNF517 WILD-TYPE 16 14 8 6 5
'ZNF517 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S26.  Gene #4: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
ZNF517 MUTATED 3 1 2 2 1
ZNF517 WILD-TYPE 10 7 12 12 6
'ZNF517 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S27.  Gene #4: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
ZNF517 MUTATED 4 1 2 2
ZNF517 WILD-TYPE 13 7 12 14
'ZNF517 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S28.  Gene #4: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
ZNF517 MUTATED 3 2 1 3
ZNF517 WILD-TYPE 13 14 4 15
'ZNF517 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S29.  Gene #4: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
ZNF517 MUTATED 3 4 2
ZNF517 WILD-TYPE 23 8 16
'ZNF517 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S30.  Gene #4: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
ZNF517 MUTATED 1 3 1 4 0
ZNF517 WILD-TYPE 12 16 7 10 2
'ZNF517 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S31.  Gene #4: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
ZNF517 MUTATED 4 3 2
ZNF517 WILD-TYPE 23 10 14
'ZNF517 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S32.  Gene #4: 'ZNF517 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
ZNF517 MUTATED 0 2 1 4 1 1
ZNF517 WILD-TYPE 9 15 6 8 5 4
'TOR3A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 1

Table S33.  Gene #5: 'TOR3A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
TOR3A MUTATED 5 3 0 3 0
TOR3A WILD-TYPE 16 16 8 5 6
'TOR3A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0221 (Fisher's exact test), Q value = 1

Table S34.  Gene #5: 'TOR3A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
TOR3A MUTATED 0 0 4 6 1
TOR3A WILD-TYPE 13 8 10 8 6

Figure S1.  Get High-res Image Gene #5: 'TOR3A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TOR3A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S35.  Gene #5: 'TOR3A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
TOR3A MUTATED 2 1 4 4
TOR3A WILD-TYPE 15 7 10 12
'TOR3A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0151 (Fisher's exact test), Q value = 1

Table S36.  Gene #5: 'TOR3A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
TOR3A MUTATED 0 3 3 5
TOR3A WILD-TYPE 16 13 2 13

Figure S2.  Get High-res Image Gene #5: 'TOR3A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'TOR3A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S37.  Gene #5: 'TOR3A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
TOR3A MUTATED 5 2 4
TOR3A WILD-TYPE 21 10 14
'TOR3A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S38.  Gene #5: 'TOR3A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
TOR3A MUTATED 2 5 2 2 0
TOR3A WILD-TYPE 11 14 6 12 2
'TOR3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S39.  Gene #5: 'TOR3A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
TOR3A MUTATED 5 2 4
TOR3A WILD-TYPE 22 11 12
'TOR3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S40.  Gene #5: 'TOR3A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
TOR3A MUTATED 2 4 2 1 2 0
TOR3A WILD-TYPE 7 13 5 11 4 5
'USP42 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S41.  Gene #6: 'USP42 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
USP42 MUTATED 5 4 2 2 3
USP42 WILD-TYPE 16 15 6 6 3
'USP42 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0487 (Fisher's exact test), Q value = 1

Table S42.  Gene #6: 'USP42 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
USP42 MUTATED 2 4 0 3 2
USP42 WILD-TYPE 11 4 14 11 5

Figure S3.  Get High-res Image Gene #6: 'USP42 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'USP42 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S43.  Gene #6: 'USP42 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
USP42 MUTATED 3 2 3 3
USP42 WILD-TYPE 14 6 11 13
'USP42 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S44.  Gene #6: 'USP42 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
USP42 MUTATED 3 4 1 3
USP42 WILD-TYPE 13 12 4 15
'USP42 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S45.  Gene #6: 'USP42 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
USP42 MUTATED 6 3 2
USP42 WILD-TYPE 20 9 16
'USP42 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S46.  Gene #6: 'USP42 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
USP42 MUTATED 2 3 2 4 0
USP42 WILD-TYPE 11 16 6 10 2
'USP42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S47.  Gene #6: 'USP42 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
USP42 MUTATED 6 3 2
USP42 WILD-TYPE 21 10 14
'USP42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S48.  Gene #6: 'USP42 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
USP42 MUTATED 1 3 3 4 0 0
USP42 WILD-TYPE 8 14 4 8 6 5
'CLDN23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S49.  Gene #7: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
CLDN23 MUTATED 2 5 1 0 2
CLDN23 WILD-TYPE 19 14 7 8 4
'CLDN23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S50.  Gene #7: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
CLDN23 MUTATED 1 2 1 3 3
CLDN23 WILD-TYPE 12 6 13 11 4
'CLDN23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0237 (Fisher's exact test), Q value = 1

Table S51.  Gene #7: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
CLDN23 MUTATED 1 1 1 7
CLDN23 WILD-TYPE 16 7 13 9

Figure S4.  Get High-res Image Gene #7: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'CLDN23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S52.  Gene #7: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
CLDN23 MUTATED 3 1 0 6
CLDN23 WILD-TYPE 13 15 5 12
'CLDN23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0905 (Fisher's exact test), Q value = 1

Table S53.  Gene #7: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
CLDN23 MUTATED 2 2 6
CLDN23 WILD-TYPE 24 10 12
'CLDN23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 1

Table S54.  Gene #7: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
CLDN23 MUTATED 1 4 3 1 1
CLDN23 WILD-TYPE 12 15 5 13 1
'CLDN23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S55.  Gene #7: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
CLDN23 MUTATED 2 3 5
CLDN23 WILD-TYPE 25 10 11
'CLDN23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S56.  Gene #7: 'CLDN23 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
CLDN23 MUTATED 0 4 2 1 1 2
CLDN23 WILD-TYPE 9 13 5 11 5 3
'TP53 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0216 (Fisher's exact test), Q value = 1

Table S57.  Gene #8: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
TP53 MUTATED 4 1 2 5 1
TP53 WILD-TYPE 17 18 6 3 5

Figure S5.  Get High-res Image Gene #8: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TP53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S58.  Gene #8: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
TP53 MUTATED 2 3 3 2 1
TP53 WILD-TYPE 11 5 11 12 6
'TP53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0201 (Fisher's exact test), Q value = 1

Table S59.  Gene #8: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
TP53 MUTATED 3 2 6 0
TP53 WILD-TYPE 14 6 8 16

Figure S6.  Get High-res Image Gene #8: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S60.  Gene #8: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
TP53 MUTATED 4 4 1 2
TP53 WILD-TYPE 12 12 4 16
'TP53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.018 (Fisher's exact test), Q value = 1

Table S61.  Gene #8: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
TP53 MUTATED 7 4 0
TP53 WILD-TYPE 19 8 18

Figure S7.  Get High-res Image Gene #8: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S62.  Gene #8: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
TP53 MUTATED 4 2 2 3 0
TP53 WILD-TYPE 9 17 6 11 2
'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0416 (Fisher's exact test), Q value = 1

Table S63.  Gene #8: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
TP53 MUTATED 7 4 0
TP53 WILD-TYPE 20 9 16

Figure S8.  Get High-res Image Gene #8: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S64.  Gene #8: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
TP53 MUTATED 3 1 3 3 1 0
TP53 WILD-TYPE 6 16 4 9 5 5
'KCNK17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S65.  Gene #9: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
KCNK17 MUTATED 2 1 1 3 2
KCNK17 WILD-TYPE 19 18 7 5 4
'KCNK17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0379 (Fisher's exact test), Q value = 1

Table S66.  Gene #9: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
KCNK17 MUTATED 0 2 5 1 0
KCNK17 WILD-TYPE 13 6 9 13 7

Figure S9.  Get High-res Image Gene #9: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KCNK17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0944 (Fisher's exact test), Q value = 1

Table S67.  Gene #9: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
KCNK17 MUTATED 1 1 5 1
KCNK17 WILD-TYPE 16 7 9 15
'KCNK17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00996 (Fisher's exact test), Q value = 1

Table S68.  Gene #9: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
KCNK17 MUTATED 0 6 1 1
KCNK17 WILD-TYPE 16 10 4 17

Figure S10.  Get High-res Image Gene #9: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'KCNK17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S69.  Gene #9: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
KCNK17 MUTATED 4 2 2
KCNK17 WILD-TYPE 22 10 16
'KCNK17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S70.  Gene #9: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
KCNK17 MUTATED 3 1 2 2 0
KCNK17 WILD-TYPE 10 18 6 12 2
'KCNK17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S71.  Gene #9: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
KCNK17 MUTATED 4 3 1
KCNK17 WILD-TYPE 23 10 15
'KCNK17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S72.  Gene #9: 'KCNK17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
KCNK17 MUTATED 3 1 1 2 0 1
KCNK17 WILD-TYPE 6 16 6 10 6 4
'LZTR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 1

Table S73.  Gene #10: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
LZTR1 MUTATED 4 0 1 1 0
LZTR1 WILD-TYPE 17 19 7 7 6
'LZTR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S74.  Gene #10: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
LZTR1 MUTATED 2 0 1 1 0
LZTR1 WILD-TYPE 11 8 13 13 7
'LZTR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0894 (Fisher's exact test), Q value = 1

Table S75.  Gene #10: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
LZTR1 MUTATED 3 1 0 0
LZTR1 WILD-TYPE 14 7 14 16
'LZTR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S76.  Gene #10: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
LZTR1 MUTATED 2 1 1 0
LZTR1 WILD-TYPE 14 15 4 18
'LZTR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S77.  Gene #10: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
LZTR1 MUTATED 3 1 0
LZTR1 WILD-TYPE 23 11 18
'LZTR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0137 (Fisher's exact test), Q value = 1

Table S78.  Gene #10: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
LZTR1 MUTATED 0 0 0 3 1
LZTR1 WILD-TYPE 13 19 8 11 1

Figure S11.  Get High-res Image Gene #10: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'LZTR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S79.  Gene #10: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
LZTR1 MUTATED 3 1 0
LZTR1 WILD-TYPE 24 12 16
'LZTR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0854 (Fisher's exact test), Q value = 1

Table S80.  Gene #10: 'LZTR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
LZTR1 MUTATED 0 0 0 3 1 0
LZTR1 WILD-TYPE 9 17 7 9 5 5
'APOE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 1

Table S81.  Gene #11: 'APOE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
APOE MUTATED 1 2 1 3 0
APOE WILD-TYPE 20 17 7 5 6
'APOE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S82.  Gene #11: 'APOE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
APOE MUTATED 1 0 3 2 0
APOE WILD-TYPE 12 8 11 12 7
'APOE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0669 (Fisher's exact test), Q value = 1

Table S83.  Gene #11: 'APOE MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
APOE MUTATED 2 0 4 0
APOE WILD-TYPE 15 8 10 16
'APOE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S84.  Gene #11: 'APOE MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
APOE MUTATED 1 3 1 1
APOE WILD-TYPE 15 13 4 17
'APOE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S85.  Gene #11: 'APOE MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
APOE MUTATED 2 3 1
APOE WILD-TYPE 24 9 17
'APOE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S86.  Gene #11: 'APOE MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
APOE MUTATED 1 3 0 2 0
APOE WILD-TYPE 12 16 8 12 2
'APOE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.027 (Fisher's exact test), Q value = 1

Table S87.  Gene #11: 'APOE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
APOE MUTATED 2 4 0
APOE WILD-TYPE 25 9 16

Figure S12.  Get High-res Image Gene #11: 'APOE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'APOE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S88.  Gene #11: 'APOE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
APOE MUTATED 0 2 1 2 1 0
APOE WILD-TYPE 9 15 6 10 5 5
'CCDC105 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S89.  Gene #12: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
CCDC105 MUTATED 1 2 1 3 0
CCDC105 WILD-TYPE 20 17 7 5 6
'CCDC105 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00859 (Fisher's exact test), Q value = 1

Table S90.  Gene #12: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
CCDC105 MUTATED 1 3 0 0 2
CCDC105 WILD-TYPE 12 5 14 14 5

Figure S13.  Get High-res Image Gene #12: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CCDC105 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S91.  Gene #12: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
CCDC105 MUTATED 1 1 2 2
CCDC105 WILD-TYPE 16 7 12 14
'CCDC105 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S92.  Gene #12: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
CCDC105 MUTATED 3 1 0 2
CCDC105 WILD-TYPE 13 15 5 16
'CCDC105 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S93.  Gene #12: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
CCDC105 MUTATED 3 1 2
CCDC105 WILD-TYPE 23 11 16
'CCDC105 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0509 (Fisher's exact test), Q value = 1

Table S94.  Gene #12: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
CCDC105 MUTATED 1 0 2 2 1
CCDC105 WILD-TYPE 12 19 6 12 1
'CCDC105 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S95.  Gene #12: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
CCDC105 MUTATED 3 2 1
CCDC105 WILD-TYPE 24 11 15
'CCDC105 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.326 (Fisher's exact test), Q value = 1

Table S96.  Gene #12: 'CCDC105 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
CCDC105 MUTATED 1 0 1 2 1 1
CCDC105 WILD-TYPE 8 17 6 10 5 4
'RINL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 1

Table S97.  Gene #13: 'RINL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
RINL MUTATED 6 1 0 1 0
RINL WILD-TYPE 15 18 8 7 6
'RINL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 1

Table S98.  Gene #13: 'RINL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
RINL MUTATED 3 1 1 2 0
RINL WILD-TYPE 10 7 13 12 7
'RINL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S99.  Gene #13: 'RINL MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
RINL MUTATED 4 1 1 1
RINL WILD-TYPE 13 7 13 15
'RINL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 1

Table S100.  Gene #13: 'RINL MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
RINL MUTATED 4 1 1 1
RINL WILD-TYPE 12 15 4 17
'RINL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S101.  Gene #13: 'RINL MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
RINL MUTATED 3 2 2
RINL WILD-TYPE 23 10 16
'RINL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S102.  Gene #13: 'RINL MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
RINL MUTATED 0 3 0 4 0
RINL WILD-TYPE 13 16 8 10 2
'RINL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S103.  Gene #13: 'RINL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
RINL MUTATED 3 3 1
RINL WILD-TYPE 24 10 15
'RINL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 1

Table S104.  Gene #13: 'RINL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
RINL MUTATED 0 3 0 4 0 0
RINL WILD-TYPE 9 14 7 8 6 5
'MAL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S105.  Gene #14: 'MAL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
MAL2 MUTATED 4 5 2 1 0
MAL2 WILD-TYPE 17 14 6 7 6
'MAL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S106.  Gene #14: 'MAL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
MAL2 MUTATED 3 2 0 3 1
MAL2 WILD-TYPE 10 6 14 11 6
'MAL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S107.  Gene #14: 'MAL2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
MAL2 MUTATED 4 2 0 3
MAL2 WILD-TYPE 13 6 14 13
'MAL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 1

Table S108.  Gene #14: 'MAL2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
MAL2 MUTATED 4 1 1 3
MAL2 WILD-TYPE 12 15 4 15
'MAL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S109.  Gene #14: 'MAL2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
MAL2 MUTATED 2 4 3
MAL2 WILD-TYPE 24 8 15
'MAL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S110.  Gene #14: 'MAL2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
MAL2 MUTATED 0 4 1 4 0
MAL2 WILD-TYPE 13 15 7 10 2
'MAL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S111.  Gene #14: 'MAL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
MAL2 MUTATED 3 3 3
MAL2 WILD-TYPE 24 10 13
'MAL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 1

Table S112.  Gene #14: 'MAL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
MAL2 MUTATED 0 3 0 4 1 1
MAL2 WILD-TYPE 9 14 7 8 5 4
'LRIG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 1

Table S113.  Gene #15: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
LRIG1 MUTATED 5 4 3 2 3
LRIG1 WILD-TYPE 16 15 5 6 3
'LRIG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S114.  Gene #15: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
LRIG1 MUTATED 3 2 2 4 1
LRIG1 WILD-TYPE 10 6 12 10 6
'LRIG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S115.  Gene #15: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
LRIG1 MUTATED 3 2 3 3
LRIG1 WILD-TYPE 14 6 11 13
'LRIG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S116.  Gene #15: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
LRIG1 MUTATED 3 2 1 5
LRIG1 WILD-TYPE 13 14 4 13
'LRIG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 1

Table S117.  Gene #15: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
LRIG1 MUTATED 4 5 3
LRIG1 WILD-TYPE 22 7 15
'LRIG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S118.  Gene #15: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
LRIG1 MUTATED 1 4 3 4 0
LRIG1 WILD-TYPE 12 15 5 10 2
'LRIG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 1

Table S119.  Gene #15: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
LRIG1 MUTATED 5 4 3
LRIG1 WILD-TYPE 22 9 13
'LRIG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S120.  Gene #15: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
LRIG1 MUTATED 1 3 2 4 1 1
LRIG1 WILD-TYPE 8 14 5 8 5 4
'C19ORF10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S121.  Gene #16: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
C19ORF10 MUTATED 3 2 0 2 0
C19ORF10 WILD-TYPE 18 17 8 6 6
'C19ORF10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S122.  Gene #16: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
C19ORF10 MUTATED 2 1 3 0 0
C19ORF10 WILD-TYPE 11 7 11 14 7
'C19ORF10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S123.  Gene #16: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
C19ORF10 MUTATED 2 2 2 0
C19ORF10 WILD-TYPE 15 6 12 16
'C19ORF10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 1

Table S124.  Gene #16: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
C19ORF10 MUTATED 2 4 0 0
C19ORF10 WILD-TYPE 14 12 5 18
'C19ORF10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S125.  Gene #16: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
C19ORF10 MUTATED 3 2 1
C19ORF10 WILD-TYPE 23 10 17
'C19ORF10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S126.  Gene #16: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
C19ORF10 MUTATED 2 2 0 2 0
C19ORF10 WILD-TYPE 11 17 8 12 2
'C19ORF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S127.  Gene #16: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
C19ORF10 MUTATED 4 2 0
C19ORF10 WILD-TYPE 23 11 16
'C19ORF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S128.  Gene #16: 'C19ORF10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
C19ORF10 MUTATED 2 2 0 2 0 0
C19ORF10 WILD-TYPE 7 15 7 10 6 5
'C10ORF95 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S129.  Gene #17: 'C10ORF95 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
C10ORF95 MUTATED 2 0 2 1 1
C10ORF95 WILD-TYPE 19 19 6 7 5
'C10ORF95 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S130.  Gene #17: 'C10ORF95 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
C10ORF95 MUTATED 1 0 3 1 1
C10ORF95 WILD-TYPE 12 8 11 13 6
'C10ORF95 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S131.  Gene #17: 'C10ORF95 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
C10ORF95 MUTATED 2 2 1 1
C10ORF95 WILD-TYPE 15 6 13 15
'C10ORF95 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S132.  Gene #17: 'C10ORF95 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
C10ORF95 MUTATED 1 2 1 2
C10ORF95 WILD-TYPE 15 14 4 16
'C10ORF95 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S133.  Gene #17: 'C10ORF95 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
C10ORF95 MUTATED 4 1 1
C10ORF95 WILD-TYPE 22 11 17
'C10ORF95 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.491 (Fisher's exact test), Q value = 1

Table S134.  Gene #17: 'C10ORF95 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
C10ORF95 MUTATED 1 2 1 1 1
C10ORF95 WILD-TYPE 12 17 7 13 1
'C10ORF95 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S135.  Gene #17: 'C10ORF95 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
C10ORF95 MUTATED 4 1 1
C10ORF95 WILD-TYPE 23 12 15
'C10ORF95 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S136.  Gene #17: 'C10ORF95 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
C10ORF95 MUTATED 1 1 1 1 2 0
C10ORF95 WILD-TYPE 8 16 6 11 4 5
'SYT8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S137.  Gene #18: 'SYT8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
SYT8 MUTATED 1 4 2 1 1
SYT8 WILD-TYPE 20 15 6 7 5
'SYT8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S138.  Gene #18: 'SYT8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
SYT8 MUTATED 0 2 2 1 1
SYT8 WILD-TYPE 13 6 12 13 6
'SYT8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0346 (Fisher's exact test), Q value = 1

Table S139.  Gene #18: 'SYT8 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
SYT8 MUTATED 0 3 1 2
SYT8 WILD-TYPE 17 5 13 14

Figure S14.  Get High-res Image Gene #18: 'SYT8 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'SYT8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S140.  Gene #18: 'SYT8 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
SYT8 MUTATED 0 4 0 2
SYT8 WILD-TYPE 16 12 5 16
'SYT8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S141.  Gene #18: 'SYT8 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
SYT8 MUTATED 3 1 2
SYT8 WILD-TYPE 23 11 16
'SYT8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 1

Table S142.  Gene #18: 'SYT8 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
SYT8 MUTATED 1 3 1 0 1
SYT8 WILD-TYPE 12 16 7 14 1
'SYT8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S143.  Gene #18: 'SYT8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
SYT8 MUTATED 3 1 2
SYT8 WILD-TYPE 24 12 14
'SYT8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S144.  Gene #18: 'SYT8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
SYT8 MUTATED 1 3 1 0 1 0
SYT8 WILD-TYPE 8 14 6 12 5 5
'IDUA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S145.  Gene #19: 'IDUA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
IDUA MUTATED 4 1 1 2 1
IDUA WILD-TYPE 17 18 7 6 5
'IDUA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S146.  Gene #19: 'IDUA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
IDUA MUTATED 2 1 3 2 0
IDUA WILD-TYPE 11 7 11 12 7
'IDUA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S147.  Gene #19: 'IDUA MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
IDUA MUTATED 4 2 1 1
IDUA WILD-TYPE 13 6 13 15
'IDUA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S148.  Gene #19: 'IDUA MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
IDUA MUTATED 3 3 1 1
IDUA WILD-TYPE 13 13 4 17
'IDUA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S149.  Gene #19: 'IDUA MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
IDUA MUTATED 3 4 1
IDUA WILD-TYPE 23 8 17
'IDUA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S150.  Gene #19: 'IDUA MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
IDUA MUTATED 1 3 0 4 0
IDUA WILD-TYPE 12 16 8 10 2
'IDUA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 1

Table S151.  Gene #19: 'IDUA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
IDUA MUTATED 3 4 1
IDUA WILD-TYPE 24 9 15
'IDUA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S152.  Gene #19: 'IDUA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
IDUA MUTATED 1 2 0 3 2 0
IDUA WILD-TYPE 8 15 7 9 4 5
'HHIPL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 1

Table S153.  Gene #20: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
HHIPL1 MUTATED 4 1 0 3 0
HHIPL1 WILD-TYPE 17 18 8 5 6
'HHIPL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S154.  Gene #20: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
HHIPL1 MUTATED 2 0 0 3 1
HHIPL1 WILD-TYPE 11 8 14 11 6
'HHIPL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S155.  Gene #20: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
HHIPL1 MUTATED 4 0 1 1
HHIPL1 WILD-TYPE 13 8 13 15
'HHIPL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S156.  Gene #20: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
HHIPL1 MUTATED 2 1 2 1
HHIPL1 WILD-TYPE 14 15 3 17
'HHIPL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S157.  Gene #20: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
HHIPL1 MUTATED 4 2 0
HHIPL1 WILD-TYPE 22 10 18
'HHIPL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S158.  Gene #20: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
HHIPL1 MUTATED 2 1 1 2 0
HHIPL1 WILD-TYPE 11 18 7 12 2
'HHIPL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S159.  Gene #20: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
HHIPL1 MUTATED 4 2 0
HHIPL1 WILD-TYPE 23 11 16
'HHIPL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S160.  Gene #20: 'HHIPL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
HHIPL1 MUTATED 1 0 2 2 1 0
HHIPL1 WILD-TYPE 8 17 5 10 5 5
'ASPDH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 1

Table S161.  Gene #21: 'ASPDH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
ASPDH MUTATED 2 2 1 3 0
ASPDH WILD-TYPE 19 17 7 5 6
'ASPDH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S162.  Gene #21: 'ASPDH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
ASPDH MUTATED 3 1 3 1 0
ASPDH WILD-TYPE 10 7 11 13 7
'ASPDH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0203 (Fisher's exact test), Q value = 1

Table S163.  Gene #21: 'ASPDH MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
ASPDH MUTATED 3 0 5 0
ASPDH WILD-TYPE 14 8 9 16

Figure S15.  Get High-res Image Gene #21: 'ASPDH MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'ASPDH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.344 (Fisher's exact test), Q value = 1

Table S164.  Gene #21: 'ASPDH MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
ASPDH MUTATED 3 4 0 1
ASPDH WILD-TYPE 13 12 5 17
'ASPDH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S165.  Gene #21: 'ASPDH MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
ASPDH MUTATED 5 2 1
ASPDH WILD-TYPE 21 10 17
'ASPDH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0277 (Fisher's exact test), Q value = 1

Table S166.  Gene #21: 'ASPDH MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
ASPDH MUTATED 4 0 0 4 0
ASPDH WILD-TYPE 9 19 8 10 2

Figure S16.  Get High-res Image Gene #21: 'ASPDH MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ASPDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 1

Table S167.  Gene #21: 'ASPDH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
ASPDH MUTATED 6 1 1
ASPDH WILD-TYPE 21 12 15
'ASPDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0793 (Fisher's exact test), Q value = 1

Table S168.  Gene #21: 'ASPDH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
ASPDH MUTATED 2 0 1 4 0 1
ASPDH WILD-TYPE 7 17 6 8 6 4
'C1ORF106 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S169.  Gene #22: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
C1ORF106 MUTATED 4 2 2 1 0
C1ORF106 WILD-TYPE 17 17 6 7 6
'C1ORF106 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S170.  Gene #22: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
C1ORF106 MUTATED 3 0 2 1 2
C1ORF106 WILD-TYPE 10 8 12 13 5
'C1ORF106 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S171.  Gene #22: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
C1ORF106 MUTATED 4 2 1 1
C1ORF106 WILD-TYPE 13 6 13 15
'C1ORF106 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S172.  Gene #22: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
C1ORF106 MUTATED 3 2 1 2
C1ORF106 WILD-TYPE 13 14 4 16
'C1ORF106 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S173.  Gene #22: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
C1ORF106 MUTATED 5 2 1
C1ORF106 WILD-TYPE 21 10 17
'C1ORF106 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S174.  Gene #22: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
C1ORF106 MUTATED 1 2 2 3 0
C1ORF106 WILD-TYPE 12 17 6 11 2
'C1ORF106 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S175.  Gene #22: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
C1ORF106 MUTATED 5 2 1
C1ORF106 WILD-TYPE 22 11 15
'C1ORF106 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S176.  Gene #22: 'C1ORF106 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
C1ORF106 MUTATED 1 2 1 2 1 1
C1ORF106 WILD-TYPE 8 15 6 10 5 4
'THEM4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00358 (Fisher's exact test), Q value = 1

Table S177.  Gene #23: 'THEM4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
THEM4 MUTATED 1 0 1 4 0
THEM4 WILD-TYPE 20 19 7 4 6

Figure S17.  Get High-res Image Gene #23: 'THEM4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'THEM4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S178.  Gene #23: 'THEM4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
THEM4 MUTATED 1 1 1 0 1
THEM4 WILD-TYPE 12 7 13 14 6
'THEM4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S179.  Gene #23: 'THEM4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
THEM4 MUTATED 1 1 2 0
THEM4 WILD-TYPE 16 7 12 16
'THEM4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S180.  Gene #23: 'THEM4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
THEM4 MUTATED 2 1 0 1
THEM4 WILD-TYPE 14 15 5 17
'THEM4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S181.  Gene #23: 'THEM4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
THEM4 MUTATED 2 2 0
THEM4 WILD-TYPE 24 10 18
'THEM4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0938 (Fisher's exact test), Q value = 1

Table S182.  Gene #23: 'THEM4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
THEM4 MUTATED 0 0 1 3 0
THEM4 WILD-TYPE 13 19 7 11 2
'THEM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 1

Table S183.  Gene #23: 'THEM4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
THEM4 MUTATED 2 2 0
THEM4 WILD-TYPE 25 11 16
'THEM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S184.  Gene #23: 'THEM4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
THEM4 MUTATED 0 0 1 3 0 0
THEM4 WILD-TYPE 9 17 6 9 6 5
'CTNNB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S185.  Gene #24: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
CTNNB1 MUTATED 3 2 1 1 0
CTNNB1 WILD-TYPE 18 17 7 7 6
'CTNNB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 1

Table S186.  Gene #24: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
CTNNB1 MUTATED 3 2 1 0 0
CTNNB1 WILD-TYPE 10 6 13 14 7
'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0194 (Fisher's exact test), Q value = 1

Table S187.  Gene #24: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
CTNNB1 MUTATED 4 2 0 0
CTNNB1 WILD-TYPE 13 6 14 16

Figure S18.  Get High-res Image Gene #24: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0181 (Fisher's exact test), Q value = 1

Table S188.  Gene #24: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
CTNNB1 MUTATED 5 1 0 0
CTNNB1 WILD-TYPE 11 15 5 18

Figure S19.  Get High-res Image Gene #24: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00174 (Fisher's exact test), Q value = 1

Table S189.  Gene #24: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
CTNNB1 MUTATED 1 5 0
CTNNB1 WILD-TYPE 25 7 18

Figure S20.  Get High-res Image Gene #24: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S190.  Gene #24: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
CTNNB1 MUTATED 0 2 0 4 0
CTNNB1 WILD-TYPE 13 17 8 10 2
'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0272 (Fisher's exact test), Q value = 1

Table S191.  Gene #24: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
CTNNB1 MUTATED 2 4 0
CTNNB1 WILD-TYPE 25 9 16

Figure S21.  Get High-res Image Gene #24: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S192.  Gene #24: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
CTNNB1 MUTATED 0 2 0 3 1 0
CTNNB1 WILD-TYPE 9 15 7 9 5 5
'GDF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 1

Table S193.  Gene #25: 'GDF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
GDF1 MUTATED 1 2 0 2 0
GDF1 WILD-TYPE 20 17 8 6 6
'GDF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 1

Table S194.  Gene #25: 'GDF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
GDF1 MUTATED 0 0 3 1 0
GDF1 WILD-TYPE 13 8 11 13 7
'GDF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S195.  Gene #25: 'GDF1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
GDF1 MUTATED 0 1 2 1
GDF1 WILD-TYPE 17 7 12 15
'GDF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S196.  Gene #25: 'GDF1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
GDF1 MUTATED 0 3 0 1
GDF1 WILD-TYPE 16 13 5 17
'GDF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0896 (Fisher's exact test), Q value = 1

Table S197.  Gene #25: 'GDF1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
GDF1 MUTATED 0 2 2
GDF1 WILD-TYPE 26 10 16
'GDF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S198.  Gene #25: 'GDF1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
GDF1 MUTATED 0 3 0 1 0
GDF1 WILD-TYPE 13 16 8 13 2
'GDF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0192 (Fisher's exact test), Q value = 1

Table S199.  Gene #25: 'GDF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
GDF1 MUTATED 0 3 1
GDF1 WILD-TYPE 27 10 15

Figure S22.  Get High-res Image Gene #25: 'GDF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'GDF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S200.  Gene #25: 'GDF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
GDF1 MUTATED 0 3 0 1 0 0
GDF1 WILD-TYPE 9 14 7 11 6 5
'TSC22D2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S201.  Gene #26: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
TSC22D2 MUTATED 4 1 0 2 1
TSC22D2 WILD-TYPE 17 18 8 6 5
'TSC22D2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S202.  Gene #26: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
TSC22D2 MUTATED 2 0 2 1 2
TSC22D2 WILD-TYPE 11 8 12 13 5
'TSC22D2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S203.  Gene #26: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
TSC22D2 MUTATED 3 0 2 2
TSC22D2 WILD-TYPE 14 8 12 14
'TSC22D2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.942 (Fisher's exact test), Q value = 1

Table S204.  Gene #26: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
TSC22D2 MUTATED 2 2 1 2
TSC22D2 WILD-TYPE 14 14 4 16
'TSC22D2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S205.  Gene #26: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
TSC22D2 MUTATED 3 2 2
TSC22D2 WILD-TYPE 23 10 16
'TSC22D2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S206.  Gene #26: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
TSC22D2 MUTATED 1 2 0 4 0
TSC22D2 WILD-TYPE 12 17 8 10 2
'TSC22D2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S207.  Gene #26: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
TSC22D2 MUTATED 3 2 2
TSC22D2 WILD-TYPE 24 11 14
'TSC22D2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.334 (Fisher's exact test), Q value = 1

Table S208.  Gene #26: 'TSC22D2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
TSC22D2 MUTATED 1 2 0 4 0 0
TSC22D2 WILD-TYPE 8 15 7 8 6 5
'ZAR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 1

Table S209.  Gene #27: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
ZAR1 MUTATED 3 3 0 2 3
ZAR1 WILD-TYPE 18 16 8 6 3
'ZAR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S210.  Gene #27: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
ZAR1 MUTATED 3 1 1 2 2
ZAR1 WILD-TYPE 10 7 13 12 5
'ZAR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S211.  Gene #27: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
ZAR1 MUTATED 3 0 2 4
ZAR1 WILD-TYPE 14 8 12 12
'ZAR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S212.  Gene #27: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
ZAR1 MUTATED 3 2 0 4
ZAR1 WILD-TYPE 13 14 5 14
'ZAR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S213.  Gene #27: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
ZAR1 MUTATED 4 1 4
ZAR1 WILD-TYPE 22 11 14
'ZAR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S214.  Gene #27: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
ZAR1 MUTATED 2 4 1 2 0
ZAR1 WILD-TYPE 11 15 7 12 2
'ZAR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S215.  Gene #27: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
ZAR1 MUTATED 4 1 4
ZAR1 WILD-TYPE 23 12 12
'ZAR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S216.  Gene #27: 'ZAR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
ZAR1 MUTATED 2 4 0 2 0 1
ZAR1 WILD-TYPE 7 13 7 10 6 4
'RGS9BP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 1

Table S217.  Gene #28: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
RGS9BP MUTATED 1 3 2 2 0
RGS9BP WILD-TYPE 20 16 6 6 6
'RGS9BP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.585 (Fisher's exact test), Q value = 1

Table S218.  Gene #28: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
RGS9BP MUTATED 3 0 3 1 1
RGS9BP WILD-TYPE 10 8 11 13 6
'RGS9BP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S219.  Gene #28: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
RGS9BP MUTATED 2 1 2 2
RGS9BP WILD-TYPE 15 7 12 14
'RGS9BP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S220.  Gene #28: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
RGS9BP MUTATED 2 3 0 2
RGS9BP WILD-TYPE 14 13 5 16
'RGS9BP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S221.  Gene #28: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
RGS9BP MUTATED 2 3 3
RGS9BP WILD-TYPE 24 9 15
'RGS9BP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S222.  Gene #28: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
RGS9BP MUTATED 2 2 1 3 0
RGS9BP WILD-TYPE 11 17 7 11 2
'RGS9BP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S223.  Gene #28: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
RGS9BP MUTATED 3 2 3
RGS9BP WILD-TYPE 24 11 13
'RGS9BP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S224.  Gene #28: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
RGS9BP MUTATED 1 2 0 3 0 2
RGS9BP WILD-TYPE 8 15 7 9 6 3
'OPRD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S225.  Gene #29: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
OPRD1 MUTATED 5 4 1 2 0
OPRD1 WILD-TYPE 16 15 7 6 6
'OPRD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S226.  Gene #29: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
OPRD1 MUTATED 3 1 3 1 3
OPRD1 WILD-TYPE 10 7 11 13 4
'OPRD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S227.  Gene #29: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
OPRD1 MUTATED 4 2 3 2
OPRD1 WILD-TYPE 13 6 11 14
'OPRD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.961 (Fisher's exact test), Q value = 1

Table S228.  Gene #29: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
OPRD1 MUTATED 3 4 1 3
OPRD1 WILD-TYPE 13 12 4 15
'OPRD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S229.  Gene #29: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
OPRD1 MUTATED 5 4 2
OPRD1 WILD-TYPE 21 8 16
'OPRD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S230.  Gene #29: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
OPRD1 MUTATED 1 5 1 4 0
OPRD1 WILD-TYPE 12 14 7 10 2
'OPRD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S231.  Gene #29: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
OPRD1 MUTATED 5 4 2
OPRD1 WILD-TYPE 22 9 14
'OPRD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S232.  Gene #29: 'OPRD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
OPRD1 MUTATED 1 5 1 4 0 0
OPRD1 WILD-TYPE 8 12 6 8 6 5
'C16ORF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S233.  Gene #30: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
C16ORF3 MUTATED 2 2 0 1 1
C16ORF3 WILD-TYPE 19 17 8 7 5
'C16ORF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00079 (Fisher's exact test), Q value = 0.78

Table S234.  Gene #30: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
C16ORF3 MUTATED 0 4 0 0 1
C16ORF3 WILD-TYPE 13 4 14 14 6

Figure S23.  Get High-res Image Gene #30: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C16ORF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S235.  Gene #30: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
C16ORF3 MUTATED 1 1 2 1
C16ORF3 WILD-TYPE 16 7 12 15
'C16ORF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S236.  Gene #30: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
C16ORF3 MUTATED 2 2 0 1
C16ORF3 WILD-TYPE 14 14 5 17
'C16ORF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S237.  Gene #30: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
C16ORF3 MUTATED 2 2 1
C16ORF3 WILD-TYPE 24 10 17
'C16ORF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S238.  Gene #30: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
C16ORF3 MUTATED 1 2 1 1 0
C16ORF3 WILD-TYPE 12 17 7 13 2
'C16ORF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 1

Table S239.  Gene #30: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
C16ORF3 MUTATED 2 2 1
C16ORF3 WILD-TYPE 25 11 15
'C16ORF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S240.  Gene #30: 'C16ORF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
C16ORF3 MUTATED 1 2 1 0 1 0
C16ORF3 WILD-TYPE 8 15 6 12 5 5
'FPGS MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S241.  Gene #31: 'FPGS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
FPGS MUTATED 2 2 1 1 0
FPGS WILD-TYPE 19 17 7 7 6
'FPGS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S242.  Gene #31: 'FPGS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
FPGS MUTATED 1 1 1 1 0
FPGS WILD-TYPE 12 7 13 13 7
'FPGS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S243.  Gene #31: 'FPGS MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
FPGS MUTATED 1 1 0 2
FPGS WILD-TYPE 16 7 14 14
'FPGS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S244.  Gene #31: 'FPGS MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
FPGS MUTATED 2 0 0 2
FPGS WILD-TYPE 14 16 5 16
'FPGS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0905 (Fisher's exact test), Q value = 1

Table S245.  Gene #31: 'FPGS MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
FPGS MUTATED 0 2 2
FPGS WILD-TYPE 26 10 16
'FPGS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S246.  Gene #31: 'FPGS MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
FPGS MUTATED 0 2 0 2 0
FPGS WILD-TYPE 13 17 8 12 2
'FPGS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.675 (Fisher's exact test), Q value = 1

Table S247.  Gene #31: 'FPGS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
FPGS MUTATED 1 1 2
FPGS WILD-TYPE 26 12 14
'FPGS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S248.  Gene #31: 'FPGS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
FPGS MUTATED 0 2 0 2 0 0
FPGS WILD-TYPE 9 15 7 10 6 5
'PLIN5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S249.  Gene #32: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
PLIN5 MUTATED 1 3 0 1 0
PLIN5 WILD-TYPE 20 16 8 7 6
'PLIN5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 1

Table S250.  Gene #32: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
PLIN5 MUTATED 1 2 1 1 0
PLIN5 WILD-TYPE 12 6 13 13 7
'PLIN5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S251.  Gene #32: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
PLIN5 MUTATED 1 1 2 1
PLIN5 WILD-TYPE 16 7 12 15
'PLIN5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S252.  Gene #32: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
PLIN5 MUTATED 1 3 0 1
PLIN5 WILD-TYPE 15 13 5 17
'PLIN5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S253.  Gene #32: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
PLIN5 MUTATED 1 2 2
PLIN5 WILD-TYPE 25 10 16
'PLIN5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S254.  Gene #32: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
PLIN5 MUTATED 1 4 0 0 0
PLIN5 WILD-TYPE 12 15 8 14 2
'PLIN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S255.  Gene #32: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
PLIN5 MUTATED 1 3 1
PLIN5 WILD-TYPE 26 10 15
'PLIN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 1

Table S256.  Gene #32: 'PLIN5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
PLIN5 MUTATED 1 4 0 0 0 0
PLIN5 WILD-TYPE 8 13 7 12 6 5
'IRX3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S257.  Gene #33: 'IRX3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
IRX3 MUTATED 3 0 1 1 0
IRX3 WILD-TYPE 18 19 7 7 6
'IRX3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S258.  Gene #33: 'IRX3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
IRX3 MUTATED 0 1 2 1 0
IRX3 WILD-TYPE 13 7 12 13 7
'IRX3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S259.  Gene #33: 'IRX3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
IRX3 MUTATED 2 1 1 0
IRX3 WILD-TYPE 15 7 13 16
'IRX3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S260.  Gene #33: 'IRX3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
IRX3 MUTATED 1 2 1 0
IRX3 WILD-TYPE 15 14 4 18
'IRX3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 1

Table S261.  Gene #33: 'IRX3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
IRX3 MUTATED 2 2 0
IRX3 WILD-TYPE 24 10 18
'IRX3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S262.  Gene #33: 'IRX3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
IRX3 MUTATED 2 1 0 1 0
IRX3 WILD-TYPE 11 18 8 13 2
'IRX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 1

Table S263.  Gene #33: 'IRX3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
IRX3 MUTATED 2 2 0
IRX3 WILD-TYPE 25 11 16
'IRX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0204 (Fisher's exact test), Q value = 1

Table S264.  Gene #33: 'IRX3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
IRX3 MUTATED 2 0 0 0 2 0
IRX3 WILD-TYPE 7 17 7 12 4 5

Figure S24.  Get High-res Image Gene #33: 'IRX3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TRIOBP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S265.  Gene #34: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
TRIOBP MUTATED 5 4 2 1 0
TRIOBP WILD-TYPE 16 15 6 7 6
'TRIOBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S266.  Gene #34: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
TRIOBP MUTATED 3 1 0 4 2
TRIOBP WILD-TYPE 10 7 14 10 5
'TRIOBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S267.  Gene #34: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
TRIOBP MUTATED 3 1 2 3
TRIOBP WILD-TYPE 14 7 12 13
'TRIOBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 1

Table S268.  Gene #34: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
TRIOBP MUTATED 3 0 1 5
TRIOBP WILD-TYPE 13 16 4 13
'TRIOBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S269.  Gene #34: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
TRIOBP MUTATED 4 2 4
TRIOBP WILD-TYPE 22 10 14
'TRIOBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S270.  Gene #34: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
TRIOBP MUTATED 2 3 2 3 0
TRIOBP WILD-TYPE 11 16 6 11 2
'TRIOBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S271.  Gene #34: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
TRIOBP MUTATED 4 2 4
TRIOBP WILD-TYPE 23 11 12
'TRIOBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S272.  Gene #34: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
TRIOBP MUTATED 1 2 1 3 1 2
TRIOBP WILD-TYPE 8 15 6 9 5 3
'KRTAP4-5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S273.  Gene #35: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
KRTAP4-5 MUTATED 2 3 0 0 0
KRTAP4-5 WILD-TYPE 19 16 8 8 6
'KRTAP4-5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S274.  Gene #35: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
KRTAP4-5 MUTATED 1 2 0 1 0
KRTAP4-5 WILD-TYPE 12 6 14 13 7
'KRTAP4-5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S275.  Gene #35: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
KRTAP4-5 MUTATED 2 0 1 1
KRTAP4-5 WILD-TYPE 15 8 13 15
'KRTAP4-5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S276.  Gene #35: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
KRTAP4-5 MUTATED 2 1 0 1
KRTAP4-5 WILD-TYPE 14 15 5 17
'KRTAP4-5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S277.  Gene #35: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
KRTAP4-5 MUTATED 2 1 1
KRTAP4-5 WILD-TYPE 24 11 17
'KRTAP4-5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S278.  Gene #35: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
KRTAP4-5 MUTATED 1 1 0 2 0
KRTAP4-5 WILD-TYPE 12 18 8 12 2
'KRTAP4-5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S279.  Gene #35: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
KRTAP4-5 MUTATED 2 1 1
KRTAP4-5 WILD-TYPE 25 12 15
'KRTAP4-5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S280.  Gene #35: 'KRTAP4-5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
KRTAP4-5 MUTATED 1 1 0 1 1 0
KRTAP4-5 WILD-TYPE 8 16 7 11 5 5
'ATXN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 1

Table S281.  Gene #36: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
ATXN1 MUTATED 3 3 3 0 1
ATXN1 WILD-TYPE 18 16 5 8 5
'ATXN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S282.  Gene #36: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
ATXN1 MUTATED 1 4 2 1 1
ATXN1 WILD-TYPE 12 4 12 13 6
'ATXN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S283.  Gene #36: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
ATXN1 MUTATED 2 3 3 1
ATXN1 WILD-TYPE 15 5 11 15
'ATXN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S284.  Gene #36: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
ATXN1 MUTATED 3 4 0 2
ATXN1 WILD-TYPE 13 12 5 16
'ATXN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 1

Table S285.  Gene #36: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
ATXN1 MUTATED 5 3 1
ATXN1 WILD-TYPE 21 9 17
'ATXN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S286.  Gene #36: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
ATXN1 MUTATED 2 2 2 3 0
ATXN1 WILD-TYPE 11 17 6 11 2
'ATXN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S287.  Gene #36: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
ATXN1 MUTATED 5 3 1
ATXN1 WILD-TYPE 22 10 15
'ATXN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S288.  Gene #36: 'ATXN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
ATXN1 MUTATED 2 2 2 2 1 0
ATXN1 WILD-TYPE 7 15 5 10 5 5
'ZNF628 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 1

Table S289.  Gene #37: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
ZNF628 MUTATED 4 1 0 2 0
ZNF628 WILD-TYPE 17 18 8 6 6
'ZNF628 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S290.  Gene #37: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
ZNF628 MUTATED 2 1 1 1 0
ZNF628 WILD-TYPE 11 7 13 13 7
'ZNF628 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S291.  Gene #37: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
ZNF628 MUTATED 3 1 1 0
ZNF628 WILD-TYPE 14 7 13 16
'ZNF628 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S292.  Gene #37: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
ZNF628 MUTATED 3 1 1 0
ZNF628 WILD-TYPE 13 15 4 18
'ZNF628 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S293.  Gene #37: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
ZNF628 MUTATED 1 3 1
ZNF628 WILD-TYPE 25 9 17
'ZNF628 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S294.  Gene #37: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
ZNF628 MUTATED 0 3 0 2 0
ZNF628 WILD-TYPE 13 16 8 12 2
'ZNF628 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0953 (Fisher's exact test), Q value = 1

Table S295.  Gene #37: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
ZNF628 MUTATED 2 3 0
ZNF628 WILD-TYPE 25 10 16
'ZNF628 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S296.  Gene #37: 'ZNF628 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
ZNF628 MUTATED 0 2 0 2 1 0
ZNF628 WILD-TYPE 9 15 7 10 5 5
'WDR34 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S297.  Gene #38: 'WDR34 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
WDR34 MUTATED 2 1 0 1 1
WDR34 WILD-TYPE 19 18 8 7 5
'WDR34 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S298.  Gene #38: 'WDR34 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
WDR34 MUTATED 2 0 1 1 1
WDR34 WILD-TYPE 11 8 13 13 6
'WDR34 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S299.  Gene #38: 'WDR34 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
WDR34 MUTATED 2 0 1 2
WDR34 WILD-TYPE 15 8 13 14
'WDR34 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S300.  Gene #38: 'WDR34 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
WDR34 MUTATED 2 2 0 1
WDR34 WILD-TYPE 14 14 5 17
'WDR34 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S301.  Gene #38: 'WDR34 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
WDR34 MUTATED 3 1 1
WDR34 WILD-TYPE 23 11 17
'WDR34 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S302.  Gene #38: 'WDR34 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
WDR34 MUTATED 1 1 0 3 0
WDR34 WILD-TYPE 12 18 8 11 2
'WDR34 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S303.  Gene #38: 'WDR34 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
WDR34 MUTATED 3 1 1
WDR34 WILD-TYPE 24 12 15
'WDR34 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.396 (Fisher's exact test), Q value = 1

Table S304.  Gene #38: 'WDR34 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
WDR34 MUTATED 0 1 1 3 0 0
WDR34 WILD-TYPE 9 16 6 9 6 5
'BTBD11 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S305.  Gene #39: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
BTBD11 MUTATED 2 2 1 1 0
BTBD11 WILD-TYPE 19 17 7 7 6
'BTBD11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S306.  Gene #39: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
BTBD11 MUTATED 1 1 1 0 2
BTBD11 WILD-TYPE 12 7 13 14 5
'BTBD11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S307.  Gene #39: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
BTBD11 MUTATED 1 0 3 1
BTBD11 WILD-TYPE 16 8 11 15
'BTBD11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S308.  Gene #39: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
BTBD11 MUTATED 1 2 0 2
BTBD11 WILD-TYPE 15 14 5 16
'BTBD11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S309.  Gene #39: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
BTBD11 MUTATED 4 0 1
BTBD11 WILD-TYPE 22 12 17
'BTBD11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 1

Table S310.  Gene #39: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
BTBD11 MUTATED 2 0 2 1 0
BTBD11 WILD-TYPE 11 19 6 13 2
'BTBD11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 1

Table S311.  Gene #39: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
BTBD11 MUTATED 4 0 1
BTBD11 WILD-TYPE 23 13 15
'BTBD11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S312.  Gene #39: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
BTBD11 MUTATED 2 0 1 1 0 1
BTBD11 WILD-TYPE 7 17 6 11 6 4
'GARS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S313.  Gene #40: 'GARS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
GARS MUTATED 6 4 3 4 4
GARS WILD-TYPE 15 15 5 4 2
'GARS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0685 (Fisher's exact test), Q value = 1

Table S314.  Gene #40: 'GARS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
GARS MUTATED 2 0 4 6 4
GARS WILD-TYPE 11 8 10 8 3
'GARS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S315.  Gene #40: 'GARS MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
GARS MUTATED 4 1 4 7
GARS WILD-TYPE 13 7 10 9
'GARS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.063 (Fisher's exact test), Q value = 1

Table S316.  Gene #40: 'GARS MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
GARS MUTATED 2 3 3 8
GARS WILD-TYPE 14 13 2 10
'GARS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S317.  Gene #40: 'GARS MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
GARS MUTATED 6 2 8
GARS WILD-TYPE 20 10 10
'GARS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S318.  Gene #40: 'GARS MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
GARS MUTATED 3 7 4 2 0
GARS WILD-TYPE 10 12 4 12 2
'GARS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0989 (Fisher's exact test), Q value = 1

Table S319.  Gene #40: 'GARS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
GARS MUTATED 6 2 8
GARS WILD-TYPE 21 11 8
'GARS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S320.  Gene #40: 'GARS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
GARS MUTATED 2 6 2 1 2 3
GARS WILD-TYPE 7 11 5 11 4 2
'ZNF598 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S321.  Gene #41: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
ZNF598 MUTATED 6 2 1 3 1
ZNF598 WILD-TYPE 15 17 7 5 5
'ZNF598 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 1

Table S322.  Gene #41: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
ZNF598 MUTATED 3 0 2 4 0
ZNF598 WILD-TYPE 10 8 12 10 7
'ZNF598 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 1

Table S323.  Gene #41: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
ZNF598 MUTATED 4 0 3 2
ZNF598 WILD-TYPE 13 8 11 14
'ZNF598 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S324.  Gene #41: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
ZNF598 MUTATED 3 2 1 3
ZNF598 WILD-TYPE 13 14 4 15
'ZNF598 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S325.  Gene #41: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
ZNF598 MUTATED 4 2 3
ZNF598 WILD-TYPE 22 10 15
'ZNF598 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S326.  Gene #41: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
ZNF598 MUTATED 1 3 0 5 0
ZNF598 WILD-TYPE 12 16 8 9 2
'ZNF598 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S327.  Gene #41: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
ZNF598 MUTATED 4 2 3
ZNF598 WILD-TYPE 23 11 13
'ZNF598 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 1

Table S328.  Gene #41: 'ZNF598 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
ZNF598 MUTATED 1 3 0 5 0 0
ZNF598 WILD-TYPE 8 14 7 7 6 5
'BHLHE22 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S329.  Gene #42: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
BHLHE22 MUTATED 1 2 2 0 0
BHLHE22 WILD-TYPE 20 17 6 8 6
'BHLHE22 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0641 (Fisher's exact test), Q value = 1

Table S330.  Gene #42: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
BHLHE22 MUTATED 0 3 1 1 0
BHLHE22 WILD-TYPE 13 5 13 13 7
'BHLHE22 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S331.  Gene #42: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
BHLHE22 MUTATED 0 2 2 1
BHLHE22 WILD-TYPE 17 6 12 15
'BHLHE22 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S332.  Gene #42: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
BHLHE22 MUTATED 2 2 0 1
BHLHE22 WILD-TYPE 14 14 5 17
'BHLHE22 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S333.  Gene #42: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
BHLHE22 MUTATED 2 2 1
BHLHE22 WILD-TYPE 24 10 17
'BHLHE22 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S334.  Gene #42: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
BHLHE22 MUTATED 2 2 0 1 0
BHLHE22 WILD-TYPE 11 17 8 13 2
'BHLHE22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 1

Table S335.  Gene #42: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
BHLHE22 MUTATED 2 2 1
BHLHE22 WILD-TYPE 25 11 15
'BHLHE22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S336.  Gene #42: 'BHLHE22 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
BHLHE22 MUTATED 2 2 0 1 0 0
BHLHE22 WILD-TYPE 7 15 7 11 6 5
'PTPLA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S337.  Gene #43: 'PTPLA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
PTPLA MUTATED 2 0 1 1 0
PTPLA WILD-TYPE 19 19 7 7 6
'PTPLA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 1

Table S338.  Gene #43: 'PTPLA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
PTPLA MUTATED 0 1 2 0 0
PTPLA WILD-TYPE 13 7 12 14 7
'PTPLA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S339.  Gene #43: 'PTPLA MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
PTPLA MUTATED 1 0 2 0
PTPLA WILD-TYPE 16 8 12 16
'PTPLA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S340.  Gene #43: 'PTPLA MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
PTPLA MUTATED 1 2 0 0
PTPLA WILD-TYPE 15 14 5 18
'PTPLA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S341.  Gene #43: 'PTPLA MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
PTPLA MUTATED 1 1 1
PTPLA WILD-TYPE 25 11 17
'PTPLA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S342.  Gene #43: 'PTPLA MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
PTPLA MUTATED 1 1 0 1 0
PTPLA WILD-TYPE 12 18 8 13 2
'PTPLA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 1

Table S343.  Gene #43: 'PTPLA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
PTPLA MUTATED 1 2 0
PTPLA WILD-TYPE 26 11 16
'PTPLA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S344.  Gene #43: 'PTPLA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
PTPLA MUTATED 1 1 0 0 1 0
PTPLA WILD-TYPE 8 16 7 12 5 5
'CD320 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.935 (Fisher's exact test), Q value = 1

Table S345.  Gene #44: 'CD320 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
CD320 MUTATED 2 1 1 0 0
CD320 WILD-TYPE 19 18 7 8 6
'CD320 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S346.  Gene #44: 'CD320 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
CD320 MUTATED 1 0 1 2 0
CD320 WILD-TYPE 12 8 13 12 7
'CD320 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S347.  Gene #44: 'CD320 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
CD320 MUTATED 1 0 2 1
CD320 WILD-TYPE 16 8 12 15
'CD320 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S348.  Gene #44: 'CD320 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
CD320 MUTATED 1 1 1 1
CD320 WILD-TYPE 15 15 4 17
'CD320 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 1

Table S349.  Gene #44: 'CD320 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
CD320 MUTATED 3 1 0
CD320 WILD-TYPE 23 11 18
'CD320 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 1

Table S350.  Gene #44: 'CD320 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
CD320 MUTATED 1 0 2 1 0
CD320 WILD-TYPE 12 19 6 13 2
'CD320 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 1

Table S351.  Gene #44: 'CD320 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
CD320 MUTATED 4 0 0
CD320 WILD-TYPE 23 13 16
'CD320 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 1

Table S352.  Gene #44: 'CD320 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
CD320 MUTATED 1 0 2 1 0 0
CD320 WILD-TYPE 8 17 5 11 6 5
'KIAA1984 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 1

Table S353.  Gene #45: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
KIAA1984 MUTATED 1 0 1 1 1
KIAA1984 WILD-TYPE 20 19 7 7 5
'KIAA1984 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S354.  Gene #45: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
KIAA1984 MUTATED 0 1 2 1 0
KIAA1984 WILD-TYPE 13 7 12 13 7
'KIAA1984 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 1

Table S355.  Gene #45: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
KIAA1984 MUTATED 1 0 3 0
KIAA1984 WILD-TYPE 16 8 11 16
'KIAA1984 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0463 (Fisher's exact test), Q value = 1

Table S356.  Gene #45: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
KIAA1984 MUTATED 0 3 1 0
KIAA1984 WILD-TYPE 16 13 4 18

Figure S25.  Get High-res Image Gene #45: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'KIAA1984 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0364 (Fisher's exact test), Q value = 1

Table S357.  Gene #45: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
KIAA1984 MUTATED 1 3 0
KIAA1984 WILD-TYPE 25 9 18

Figure S26.  Get High-res Image Gene #45: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'KIAA1984 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S358.  Gene #45: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
KIAA1984 MUTATED 0 1 1 2 0
KIAA1984 WILD-TYPE 13 18 7 12 2
'KIAA1984 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0617 (Fisher's exact test), Q value = 1

Table S359.  Gene #45: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
KIAA1984 MUTATED 1 3 0
KIAA1984 WILD-TYPE 26 10 16
'KIAA1984 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.669 (Fisher's exact test), Q value = 1

Table S360.  Gene #45: 'KIAA1984 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
KIAA1984 MUTATED 0 1 1 2 0 0
KIAA1984 WILD-TYPE 9 16 6 10 6 5
'TPO MUTATION STATUS' versus 'CN_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S361.  Gene #46: 'TPO MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
TPO MUTATED 6 2 1 1 2
TPO WILD-TYPE 15 17 7 7 4
'TPO MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 1

Table S362.  Gene #46: 'TPO MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
TPO MUTATED 3 3 1 2 0
TPO WILD-TYPE 10 5 13 12 7
'TPO MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S363.  Gene #46: 'TPO MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
TPO MUTATED 5 2 1 1
TPO WILD-TYPE 12 6 13 15
'TPO MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 1

Table S364.  Gene #46: 'TPO MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
TPO MUTATED 4 2 2 1
TPO WILD-TYPE 12 14 3 17
'TPO MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 1

Table S365.  Gene #46: 'TPO MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
TPO MUTATED 4 4 1
TPO WILD-TYPE 22 8 17
'TPO MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 1

Table S366.  Gene #46: 'TPO MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
TPO MUTATED 1 2 1 5 0
TPO WILD-TYPE 12 17 7 9 2
'TPO MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S367.  Gene #46: 'TPO MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
TPO MUTATED 4 4 1
TPO WILD-TYPE 23 9 15
'TPO MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S368.  Gene #46: 'TPO MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
TPO MUTATED 1 1 0 5 1 1
TPO WILD-TYPE 8 16 7 7 5 4
'AATK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 1

Table S369.  Gene #47: 'AATK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
AATK MUTATED 0 4 1 0 1
AATK WILD-TYPE 21 15 7 8 5
'AATK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S370.  Gene #47: 'AATK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
AATK MUTATED 0 1 2 0 1
AATK WILD-TYPE 13 7 12 14 6
'AATK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S371.  Gene #47: 'AATK MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
AATK MUTATED 0 1 2 1
AATK WILD-TYPE 17 7 12 15
'AATK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 1

Table S372.  Gene #47: 'AATK MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
AATK MUTATED 0 3 0 1
AATK WILD-TYPE 16 13 5 17
'AATK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S373.  Gene #47: 'AATK MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
AATK MUTATED 2 1 1
AATK WILD-TYPE 24 11 17
'AATK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S374.  Gene #47: 'AATK MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
AATK MUTATED 2 2 0 0 0
AATK WILD-TYPE 11 17 8 14 2
'AATK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S375.  Gene #47: 'AATK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
AATK MUTATED 2 1 1
AATK WILD-TYPE 25 12 15
'AATK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S376.  Gene #47: 'AATK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
AATK MUTATED 2 2 0 0 0 0
AATK WILD-TYPE 7 15 7 12 6 5
'PANK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S377.  Gene #48: 'PANK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
PANK2 MUTATED 3 1 0 1 0
PANK2 WILD-TYPE 18 18 8 7 6
'PANK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S378.  Gene #48: 'PANK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
PANK2 MUTATED 2 0 0 1 0
PANK2 WILD-TYPE 11 8 14 13 7
'PANK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S379.  Gene #48: 'PANK2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
PANK2 MUTATED 3 0 0 0
PANK2 WILD-TYPE 14 8 14 16
'PANK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S380.  Gene #48: 'PANK2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
PANK2 MUTATED 2 0 1 0
PANK2 WILD-TYPE 14 16 4 18
'PANK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S381.  Gene #48: 'PANK2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
PANK2 MUTATED 2 1 0
PANK2 WILD-TYPE 24 11 18
'PANK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S382.  Gene #48: 'PANK2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
PANK2 MUTATED 1 0 0 2 0
PANK2 WILD-TYPE 12 19 8 12 2
'PANK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S383.  Gene #48: 'PANK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
PANK2 MUTATED 2 1 0
PANK2 WILD-TYPE 25 12 16
'PANK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S384.  Gene #48: 'PANK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
PANK2 MUTATED 1 0 0 2 0 0
PANK2 WILD-TYPE 8 17 7 10 6 5
'SNED1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S385.  Gene #49: 'SNED1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
SNED1 MUTATED 4 1 0 0 1
SNED1 WILD-TYPE 17 18 8 8 5
'SNED1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S386.  Gene #49: 'SNED1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
SNED1 MUTATED 2 2 1 1 0
SNED1 WILD-TYPE 11 6 13 13 7
'SNED1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S387.  Gene #49: 'SNED1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
SNED1 MUTATED 4 1 0 1
SNED1 WILD-TYPE 13 7 14 15
'SNED1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S388.  Gene #49: 'SNED1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
SNED1 MUTATED 3 1 1 1
SNED1 WILD-TYPE 13 15 4 17
'SNED1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0442 (Fisher's exact test), Q value = 1

Table S389.  Gene #49: 'SNED1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
SNED1 MUTATED 1 4 1
SNED1 WILD-TYPE 25 8 17

Figure S27.  Get High-res Image Gene #49: 'SNED1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'SNED1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S390.  Gene #49: 'SNED1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
SNED1 MUTATED 0 3 1 2 0
SNED1 WILD-TYPE 13 16 7 12 2
'SNED1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0459 (Fisher's exact test), Q value = 1

Table S391.  Gene #49: 'SNED1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
SNED1 MUTATED 1 4 1
SNED1 WILD-TYPE 26 9 15

Figure S28.  Get High-res Image Gene #49: 'SNED1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'SNED1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 1

Table S392.  Gene #49: 'SNED1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
SNED1 MUTATED 0 2 0 1 2 1
SNED1 WILD-TYPE 9 15 7 11 4 4
'CCDC150 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S393.  Gene #50: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
CCDC150 MUTATED 2 0 1 1 0
CCDC150 WILD-TYPE 19 19 7 7 6
'CCDC150 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S394.  Gene #50: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
CCDC150 MUTATED 2 0 1 1 0
CCDC150 WILD-TYPE 11 8 13 13 7
'CCDC150 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 1

Table S395.  Gene #50: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
CCDC150 MUTATED 3 0 1 0
CCDC150 WILD-TYPE 14 8 13 16
'CCDC150 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 1

Table S396.  Gene #50: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
CCDC150 MUTATED 2 1 1 0
CCDC150 WILD-TYPE 14 15 4 18
'CCDC150 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S397.  Gene #50: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
CCDC150 MUTATED 3 1 0
CCDC150 WILD-TYPE 23 11 18
'CCDC150 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S398.  Gene #50: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
CCDC150 MUTATED 1 0 0 3 0
CCDC150 WILD-TYPE 12 19 8 11 2
'CCDC150 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S399.  Gene #50: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
CCDC150 MUTATED 3 1 0
CCDC150 WILD-TYPE 24 12 16
'CCDC150 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S400.  Gene #50: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
CCDC150 MUTATED 1 0 0 3 0 0
CCDC150 WILD-TYPE 8 17 7 9 6 5
'ERCC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S401.  Gene #51: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
ERCC2 MUTATED 3 3 2 2 0
ERCC2 WILD-TYPE 18 16 6 6 6
'ERCC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 1

Table S402.  Gene #51: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
ERCC2 MUTATED 4 3 2 1 0
ERCC2 WILD-TYPE 9 5 12 13 7
'ERCC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S403.  Gene #51: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
ERCC2 MUTATED 4 2 3 1
ERCC2 WILD-TYPE 13 6 11 15
'ERCC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 1

Table S404.  Gene #51: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
ERCC2 MUTATED 5 4 0 1
ERCC2 WILD-TYPE 11 12 5 17
'ERCC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S405.  Gene #51: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
ERCC2 MUTATED 6 2 2
ERCC2 WILD-TYPE 20 10 16
'ERCC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S406.  Gene #51: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
ERCC2 MUTATED 3 2 0 5 0
ERCC2 WILD-TYPE 10 17 8 9 2
'ERCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S407.  Gene #51: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
ERCC2 MUTATED 7 2 1
ERCC2 WILD-TYPE 20 11 15
'ERCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0884 (Fisher's exact test), Q value = 1

Table S408.  Gene #51: 'ERCC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
ERCC2 MUTATED 3 2 0 5 0 0
ERCC2 WILD-TYPE 6 15 7 7 6 5
'RREB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S409.  Gene #52: 'RREB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
RREB1 MUTATED 3 1 1 0 0
RREB1 WILD-TYPE 18 18 7 8 6
'RREB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S410.  Gene #52: 'RREB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
RREB1 MUTATED 2 0 1 1 0
RREB1 WILD-TYPE 11 8 13 13 7
'RREB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S411.  Gene #52: 'RREB1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
RREB1 MUTATED 1 1 1 0
RREB1 WILD-TYPE 16 7 13 16
'RREB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S412.  Gene #52: 'RREB1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
RREB1 MUTATED 1 1 0 1
RREB1 WILD-TYPE 15 15 5 17
'RREB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.675 (Fisher's exact test), Q value = 1

Table S413.  Gene #52: 'RREB1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
RREB1 MUTATED 1 1 2
RREB1 WILD-TYPE 25 11 16
'RREB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S414.  Gene #52: 'RREB1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
RREB1 MUTATED 2 2 0 0 0
RREB1 WILD-TYPE 11 17 8 14 2
'RREB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.675 (Fisher's exact test), Q value = 1

Table S415.  Gene #52: 'RREB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
RREB1 MUTATED 1 1 2
RREB1 WILD-TYPE 26 12 14
'RREB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S416.  Gene #52: 'RREB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
RREB1 MUTATED 1 2 0 0 0 1
RREB1 WILD-TYPE 8 15 7 12 6 4
'RNF39 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S417.  Gene #53: 'RNF39 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
RNF39 MUTATED 2 1 0 2 0
RNF39 WILD-TYPE 19 18 8 6 6
'RNF39 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S418.  Gene #53: 'RNF39 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
RNF39 MUTATED 1 2 2 0 0
RNF39 WILD-TYPE 12 6 12 14 7
'RNF39 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S419.  Gene #53: 'RNF39 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
RNF39 MUTATED 1 1 3 0
RNF39 WILD-TYPE 16 7 11 16
'RNF39 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S420.  Gene #53: 'RNF39 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
RNF39 MUTATED 2 3 0 0
RNF39 WILD-TYPE 14 13 5 18
'RNF39 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 1

Table S421.  Gene #53: 'RNF39 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
RNF39 MUTATED 3 2 0
RNF39 WILD-TYPE 23 10 18
'RNF39 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S422.  Gene #53: 'RNF39 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
RNF39 MUTATED 2 1 0 2 0
RNF39 WILD-TYPE 11 18 8 12 2
'RNF39 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S423.  Gene #53: 'RNF39 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
RNF39 MUTATED 3 2 0
RNF39 WILD-TYPE 24 11 16
'RNF39 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S424.  Gene #53: 'RNF39 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
RNF39 MUTATED 2 1 0 2 0 0
RNF39 WILD-TYPE 7 16 7 10 6 5
'SEMA5B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S425.  Gene #54: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
SEMA5B MUTATED 5 2 0 0 1
SEMA5B WILD-TYPE 16 17 8 8 5
'SEMA5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S426.  Gene #54: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
SEMA5B MUTATED 2 1 0 3 0
SEMA5B WILD-TYPE 11 7 14 11 7
'SEMA5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S427.  Gene #54: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
SEMA5B MUTATED 3 1 0 2
SEMA5B WILD-TYPE 14 7 14 14
'SEMA5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S428.  Gene #54: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
SEMA5B MUTATED 3 0 1 2
SEMA5B WILD-TYPE 13 16 4 16
'SEMA5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S429.  Gene #54: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
SEMA5B MUTATED 2 2 2
SEMA5B WILD-TYPE 24 10 16
'SEMA5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S430.  Gene #54: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
SEMA5B MUTATED 0 4 0 2 0
SEMA5B WILD-TYPE 13 15 8 12 2
'SEMA5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S431.  Gene #54: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
SEMA5B MUTATED 2 2 2
SEMA5B WILD-TYPE 25 11 14
'SEMA5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S432.  Gene #54: 'SEMA5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
SEMA5B MUTATED 0 3 0 2 1 0
SEMA5B WILD-TYPE 9 14 7 10 5 5
'TAF5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S433.  Gene #55: 'TAF5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
TAF5 MUTATED 2 1 1 0 0
TAF5 WILD-TYPE 19 18 7 8 6
'TAF5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S434.  Gene #55: 'TAF5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
TAF5 MUTATED 1 1 1 0 1
TAF5 WILD-TYPE 12 7 13 14 6
'TAF5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S435.  Gene #55: 'TAF5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
TAF5 MUTATED 1 1 1 1
TAF5 WILD-TYPE 16 7 13 15
'TAF5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S436.  Gene #55: 'TAF5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
TAF5 MUTATED 2 1 0 1
TAF5 WILD-TYPE 14 15 5 17
'TAF5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0212 (Fisher's exact test), Q value = 1

Table S437.  Gene #55: 'TAF5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
TAF5 MUTATED 0 3 1
TAF5 WILD-TYPE 26 9 17

Figure S29.  Get High-res Image Gene #55: 'TAF5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'TAF5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S438.  Gene #55: 'TAF5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
TAF5 MUTATED 0 4 0 0 0
TAF5 WILD-TYPE 13 15 8 14 2
'TAF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0195 (Fisher's exact test), Q value = 1

Table S439.  Gene #55: 'TAF5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
TAF5 MUTATED 0 3 1
TAF5 WILD-TYPE 27 10 15

Figure S30.  Get High-res Image Gene #55: 'TAF5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'TAF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 1

Table S440.  Gene #55: 'TAF5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
TAF5 MUTATED 0 4 0 0 0 0
TAF5 WILD-TYPE 9 13 7 12 6 5
'SARM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0301 (Fisher's exact test), Q value = 1

Table S441.  Gene #56: 'SARM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
SARM1 MUTATED 4 0 0 3 0
SARM1 WILD-TYPE 17 19 8 5 6

Figure S31.  Get High-res Image Gene #56: 'SARM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SARM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S442.  Gene #56: 'SARM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
SARM1 MUTATED 0 1 3 2 0
SARM1 WILD-TYPE 13 7 11 12 7
'SARM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S443.  Gene #56: 'SARM1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
SARM1 MUTATED 2 1 3 0
SARM1 WILD-TYPE 15 7 11 16
'SARM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0285 (Fisher's exact test), Q value = 1

Table S444.  Gene #56: 'SARM1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
SARM1 MUTATED 1 3 2 0
SARM1 WILD-TYPE 15 13 3 18

Figure S32.  Get High-res Image Gene #56: 'SARM1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'SARM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S445.  Gene #56: 'SARM1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
SARM1 MUTATED 1 3 2
SARM1 WILD-TYPE 25 9 16
'SARM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S446.  Gene #56: 'SARM1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
SARM1 MUTATED 2 3 0 1 0
SARM1 WILD-TYPE 11 16 8 13 2
'SARM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.046 (Fisher's exact test), Q value = 1

Table S447.  Gene #56: 'SARM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
SARM1 MUTATED 1 4 1
SARM1 WILD-TYPE 26 9 15

Figure S33.  Get High-res Image Gene #56: 'SARM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'SARM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.917 (Fisher's exact test), Q value = 1

Table S448.  Gene #56: 'SARM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
SARM1 MUTATED 1 2 0 1 1 1
SARM1 WILD-TYPE 8 15 7 11 5 4
'PRSS27 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S449.  Gene #57: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
PRSS27 MUTATED 1 1 1 0 0
PRSS27 WILD-TYPE 20 18 7 8 6
'PRSS27 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S450.  Gene #57: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
PRSS27 MUTATED 0 1 1 1 0
PRSS27 WILD-TYPE 13 7 13 13 7
'PRSS27 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 1

Table S451.  Gene #57: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
PRSS27 MUTATED 1 1 1 0
PRSS27 WILD-TYPE 16 7 13 16
'PRSS27 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S452.  Gene #57: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
PRSS27 MUTATED 0 2 1 0
PRSS27 WILD-TYPE 16 14 4 18
'PRSS27 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S453.  Gene #57: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
PRSS27 MUTATED 1 2 0
PRSS27 WILD-TYPE 25 10 18
'PRSS27 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S454.  Gene #57: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
PRSS27 MUTATED 1 1 0 1 0
PRSS27 WILD-TYPE 12 18 8 13 2
'PRSS27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S455.  Gene #57: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
PRSS27 MUTATED 1 2 0
PRSS27 WILD-TYPE 26 11 16
'PRSS27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S456.  Gene #57: 'PRSS27 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
PRSS27 MUTATED 1 1 0 1 0 0
PRSS27 WILD-TYPE 8 16 7 11 6 5
'TMEM189 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 1

Table S457.  Gene #58: 'TMEM189 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
TMEM189 MUTATED 2 0 0 2 0
TMEM189 WILD-TYPE 19 19 8 6 6
'NOXA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S458.  Gene #59: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
NOXA1 MUTATED 3 0 2 0 0
NOXA1 WILD-TYPE 18 19 6 8 6
'NOXA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S459.  Gene #59: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
NOXA1 MUTATED 2 0 1 0 0
NOXA1 WILD-TYPE 11 8 13 14 7
'NOXA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S460.  Gene #59: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
NOXA1 MUTATED 2 1 0 0
NOXA1 WILD-TYPE 15 7 14 16
'NOXA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S461.  Gene #59: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
NOXA1 MUTATED 2 1 0 0
NOXA1 WILD-TYPE 14 15 5 18
'NOXA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S462.  Gene #59: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
NOXA1 MUTATED 3 0 0
NOXA1 WILD-TYPE 23 12 18
'NOXA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S463.  Gene #59: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
NOXA1 MUTATED 1 0 0 2 0
NOXA1 WILD-TYPE 12 19 8 12 2
'NOXA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S464.  Gene #59: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
NOXA1 MUTATED 3 0 0
NOXA1 WILD-TYPE 24 13 16
'NOXA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S465.  Gene #59: 'NOXA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
NOXA1 MUTATED 1 0 0 2 0 0
NOXA1 WILD-TYPE 8 17 7 10 6 5
'LRP11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0406 (Fisher's exact test), Q value = 1

Table S466.  Gene #60: 'LRP11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
LRP11 MUTATED 0 2 1 3 0
LRP11 WILD-TYPE 21 17 7 5 6

Figure S34.  Get High-res Image Gene #60: 'LRP11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LRP11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0727 (Fisher's exact test), Q value = 1

Table S467.  Gene #60: 'LRP11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
LRP11 MUTATED 1 0 4 0 0
LRP11 WILD-TYPE 12 8 10 14 7
'LRP11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S468.  Gene #60: 'LRP11 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
LRP11 MUTATED 1 1 2 1
LRP11 WILD-TYPE 16 7 12 15
'LRP11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S469.  Gene #60: 'LRP11 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
LRP11 MUTATED 1 3 0 1
LRP11 WILD-TYPE 15 13 5 17
'LRP11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S470.  Gene #60: 'LRP11 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
LRP11 MUTATED 2 2 1
LRP11 WILD-TYPE 24 10 17
'LRP11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S471.  Gene #60: 'LRP11 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
LRP11 MUTATED 1 2 0 2 0
LRP11 WILD-TYPE 12 17 8 12 2
'LRP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S472.  Gene #60: 'LRP11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
LRP11 MUTATED 2 2 1
LRP11 WILD-TYPE 25 11 15
'LRP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S473.  Gene #60: 'LRP11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
LRP11 MUTATED 1 2 0 2 0 0
LRP11 WILD-TYPE 8 15 7 10 6 5
'RNF149 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S474.  Gene #61: 'RNF149 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
RNF149 MUTATED 0 2 1 1 0
RNF149 WILD-TYPE 21 17 7 7 6
'RNF149 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0356 (Fisher's exact test), Q value = 1

Table S475.  Gene #61: 'RNF149 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
RNF149 MUTATED 0 0 2 0 2
RNF149 WILD-TYPE 13 8 12 14 5

Figure S35.  Get High-res Image Gene #61: 'RNF149 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RNF149 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S476.  Gene #61: 'RNF149 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
RNF149 MUTATED 0 1 2 1
RNF149 WILD-TYPE 17 7 12 15
'RNF149 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S477.  Gene #61: 'RNF149 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
RNF149 MUTATED 0 2 0 2
RNF149 WILD-TYPE 16 14 5 16
'RNF149 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S478.  Gene #61: 'RNF149 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
RNF149 MUTATED 1 2 1
RNF149 WILD-TYPE 25 10 17
'RNF149 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S479.  Gene #61: 'RNF149 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
RNF149 MUTATED 0 3 1 0 0
RNF149 WILD-TYPE 13 16 7 14 2
'RNF149 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S480.  Gene #61: 'RNF149 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
RNF149 MUTATED 1 2 1
RNF149 WILD-TYPE 26 11 15
'RNF149 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S481.  Gene #61: 'RNF149 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
RNF149 MUTATED 0 3 1 0 0 0
RNF149 WILD-TYPE 9 14 6 12 6 5
'DMKN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S482.  Gene #62: 'DMKN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
DMKN MUTATED 1 1 0 1 0
DMKN WILD-TYPE 20 18 8 7 6
'DMKN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 1

Table S483.  Gene #62: 'DMKN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
DMKN MUTATED 0 1 2 0 0
DMKN WILD-TYPE 13 7 12 14 7
'DMKN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S484.  Gene #62: 'DMKN MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
DMKN MUTATED 1 1 1 0
DMKN WILD-TYPE 16 7 13 16
'DMKN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S485.  Gene #62: 'DMKN MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
DMKN MUTATED 1 2 0 0
DMKN WILD-TYPE 15 14 5 18
'DMKN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00831 (Fisher's exact test), Q value = 1

Table S486.  Gene #62: 'DMKN MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
DMKN MUTATED 0 3 0
DMKN WILD-TYPE 26 9 18

Figure S36.  Get High-res Image Gene #62: 'DMKN MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'DMKN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S487.  Gene #62: 'DMKN MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
DMKN MUTATED 0 1 0 2 0
DMKN WILD-TYPE 13 18 8 12 2
'DMKN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 1

Table S488.  Gene #62: 'DMKN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
DMKN MUTATED 0 3 0
DMKN WILD-TYPE 27 10 16

Figure S37.  Get High-res Image Gene #62: 'DMKN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'DMKN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S489.  Gene #62: 'DMKN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
DMKN MUTATED 0 1 0 1 1 0
DMKN WILD-TYPE 9 16 7 11 5 5
'FANK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S490.  Gene #63: 'FANK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
FANK1 MUTATED 2 1 1 0 0
FANK1 WILD-TYPE 19 18 7 8 6
'FANK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S491.  Gene #63: 'FANK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
FANK1 MUTATED 0 1 0 1 1
FANK1 WILD-TYPE 13 7 14 13 6
'FANK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S492.  Gene #63: 'FANK1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
FANK1 MUTATED 1 1 0 1
FANK1 WILD-TYPE 16 7 14 15
'FANK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S493.  Gene #63: 'FANK1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
FANK1 MUTATED 1 0 1 1
FANK1 WILD-TYPE 15 16 4 17
'FANK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S494.  Gene #63: 'FANK1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
FANK1 MUTATED 1 1 1
FANK1 WILD-TYPE 25 11 17
'FANK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S495.  Gene #63: 'FANK1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
FANK1 MUTATED 0 0 1 2 0
FANK1 WILD-TYPE 13 19 7 12 2
'FANK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S496.  Gene #63: 'FANK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
FANK1 MUTATED 1 1 1
FANK1 WILD-TYPE 26 12 15
'FANK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S497.  Gene #63: 'FANK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
FANK1 MUTATED 0 0 0 1 1 1
FANK1 WILD-TYPE 9 17 7 11 5 4
'MUC5B MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S498.  Gene #64: 'MUC5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
MUC5B MUTATED 7 6 3 3 2
MUC5B WILD-TYPE 14 13 5 5 4
'MUC5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S499.  Gene #64: 'MUC5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
MUC5B MUTATED 3 3 6 4 4
MUC5B WILD-TYPE 10 5 8 10 3
'MUC5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S500.  Gene #64: 'MUC5B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
MUC5B MUTATED 5 3 7 5
MUC5B WILD-TYPE 12 5 7 11
'MUC5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S501.  Gene #64: 'MUC5B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
MUC5B MUTATED 4 7 2 7
MUC5B WILD-TYPE 12 9 3 11
'MUC5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S502.  Gene #64: 'MUC5B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
MUC5B MUTATED 8 5 7
MUC5B WILD-TYPE 18 7 11
'MUC5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S503.  Gene #64: 'MUC5B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
MUC5B MUTATED 3 7 4 6 0
MUC5B WILD-TYPE 10 12 4 8 2
'MUC5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S504.  Gene #64: 'MUC5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
MUC5B MUTATED 8 6 6
MUC5B WILD-TYPE 19 7 10
'MUC5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S505.  Gene #64: 'MUC5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
MUC5B MUTATED 3 6 2 6 1 2
MUC5B WILD-TYPE 6 11 5 6 5 3
'PABPC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 1

Table S506.  Gene #65: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
PABPC1 MUTATED 1 1 2 0 0
PABPC1 WILD-TYPE 20 18 6 8 6
'GLTPD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0714 (Fisher's exact test), Q value = 1

Table S507.  Gene #66: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
GLTPD2 MUTATED 1 1 0 3 1
GLTPD2 WILD-TYPE 20 18 8 5 5
'GLTPD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S508.  Gene #66: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
GLTPD2 MUTATED 1 0 2 2 1
GLTPD2 WILD-TYPE 12 8 12 12 6
'GLTPD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S509.  Gene #66: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
GLTPD2 MUTATED 2 0 2 2
GLTPD2 WILD-TYPE 15 8 12 14
'GLTPD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S510.  Gene #66: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
GLTPD2 MUTATED 1 3 1 1
GLTPD2 WILD-TYPE 15 13 4 17
'GLTPD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S511.  Gene #66: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
GLTPD2 MUTATED 3 2 1
GLTPD2 WILD-TYPE 23 10 17
'GLTPD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S512.  Gene #66: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
GLTPD2 MUTATED 2 1 0 3 0
GLTPD2 WILD-TYPE 11 18 8 11 2
'GLTPD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S513.  Gene #66: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
GLTPD2 MUTATED 3 2 1
GLTPD2 WILD-TYPE 24 11 15
'GLTPD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S514.  Gene #66: 'GLTPD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
GLTPD2 MUTATED 1 1 1 3 0 0
GLTPD2 WILD-TYPE 8 16 6 9 6 5
'MEN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0955 (Fisher's exact test), Q value = 1

Table S515.  Gene #67: 'MEN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
MEN1 MUTATED 0 1 1 2 0
MEN1 WILD-TYPE 21 18 7 6 6
'MEN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0433 (Fisher's exact test), Q value = 1

Table S516.  Gene #67: 'MEN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
MEN1 MUTATED 0 1 4 0 0
MEN1 WILD-TYPE 13 7 10 14 7

Figure S38.  Get High-res Image Gene #67: 'MEN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MEN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 1

Table S517.  Gene #67: 'MEN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
MEN1 MUTATED 0 1 4 0
MEN1 WILD-TYPE 17 7 10 16

Figure S39.  Get High-res Image Gene #67: 'MEN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'MEN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00613 (Fisher's exact test), Q value = 1

Table S518.  Gene #67: 'MEN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
MEN1 MUTATED 0 5 0 0
MEN1 WILD-TYPE 16 11 5 18

Figure S40.  Get High-res Image Gene #67: 'MEN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'MEN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S519.  Gene #67: 'MEN1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
MEN1 MUTATED 4 1 0
MEN1 WILD-TYPE 22 11 18
'MEN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0387 (Fisher's exact test), Q value = 1

Table S520.  Gene #67: 'MEN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
MEN1 MUTATED 4 0 0 1 0
MEN1 WILD-TYPE 9 19 8 13 2

Figure S41.  Get High-res Image Gene #67: 'MEN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'MEN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S521.  Gene #67: 'MEN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
MEN1 MUTATED 4 1 0
MEN1 WILD-TYPE 23 12 16
'MEN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00889 (Fisher's exact test), Q value = 1

Table S522.  Gene #67: 'MEN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
MEN1 MUTATED 4 0 0 1 0 0
MEN1 WILD-TYPE 5 17 7 11 6 5

Figure S42.  Get High-res Image Gene #67: 'MEN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SRPX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S523.  Gene #68: 'SRPX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
SRPX MUTATED 1 2 0 0 0
SRPX WILD-TYPE 20 17 8 8 6
'SRPX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S524.  Gene #68: 'SRPX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
SRPX MUTATED 0 2 0 1 0
SRPX WILD-TYPE 13 6 14 13 7
'SRPX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S525.  Gene #68: 'SRPX MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
SRPX MUTATED 0 1 1 1
SRPX WILD-TYPE 17 7 13 15
'SRPX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S526.  Gene #68: 'SRPX MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
SRPX MUTATED 1 1 0 1
SRPX WILD-TYPE 15 15 5 17
'SRPX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S527.  Gene #68: 'SRPX MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
SRPX MUTATED 1 1 1
SRPX WILD-TYPE 25 11 17
'SRPX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S528.  Gene #68: 'SRPX MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
SRPX MUTATED 1 2 0 0 0
SRPX WILD-TYPE 12 17 8 14 2
'SRPX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S529.  Gene #68: 'SRPX MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
SRPX MUTATED 1 1 1
SRPX WILD-TYPE 26 12 15
'SRPX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S530.  Gene #68: 'SRPX MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
SRPX MUTATED 1 2 0 0 0 0
SRPX WILD-TYPE 8 15 7 12 6 5
'MAP1S MUTATION STATUS' versus 'CN_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 1

Table S531.  Gene #69: 'MAP1S MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
MAP1S MUTATED 0 2 1 1 1
MAP1S WILD-TYPE 21 17 7 7 5
'MAP1S MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S532.  Gene #69: 'MAP1S MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
MAP1S MUTATED 1 1 0 3 0
MAP1S WILD-TYPE 12 7 14 11 7
'MAP1S MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S533.  Gene #69: 'MAP1S MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
MAP1S MUTATED 1 1 0 3
MAP1S WILD-TYPE 16 7 14 13
'MAP1S MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S534.  Gene #69: 'MAP1S MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
MAP1S MUTATED 2 1 0 2
MAP1S WILD-TYPE 14 15 5 16
'MAP1S MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S535.  Gene #69: 'MAP1S MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
MAP1S MUTATED 2 1 2
MAP1S WILD-TYPE 24 11 16
'MAP1S MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S536.  Gene #69: 'MAP1S MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
MAP1S MUTATED 2 2 0 1 0
MAP1S WILD-TYPE 11 17 8 13 2
'MAP1S MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S537.  Gene #69: 'MAP1S MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
MAP1S MUTATED 2 1 2
MAP1S WILD-TYPE 25 12 14
'MAP1S MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S538.  Gene #69: 'MAP1S MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
MAP1S MUTATED 1 2 1 1 0 0
MAP1S WILD-TYPE 8 15 6 11 6 5
'SCRT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S539.  Gene #70: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
SCRT1 MUTATED 1 1 0 1 0
SCRT1 WILD-TYPE 20 18 8 7 6
'SCRT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S540.  Gene #70: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
SCRT1 MUTATED 2 0 0 1 0
SCRT1 WILD-TYPE 11 8 14 13 7
'SCRT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 1

Table S541.  Gene #70: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
SCRT1 MUTATED 2 0 1 0
SCRT1 WILD-TYPE 15 8 13 16
'SCRT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S542.  Gene #70: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
SCRT1 MUTATED 2 0 0 1
SCRT1 WILD-TYPE 14 16 5 17
'SCRT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S543.  Gene #70: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
SCRT1 MUTATED 2 1 0
SCRT1 WILD-TYPE 24 11 18
'SCRT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S544.  Gene #70: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
SCRT1 MUTATED 0 1 1 1 0
SCRT1 WILD-TYPE 13 18 7 13 2
'SCRT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S545.  Gene #70: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
SCRT1 MUTATED 2 1 0
SCRT1 WILD-TYPE 25 12 16
'SCRT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S546.  Gene #70: 'SCRT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
SCRT1 MUTATED 0 1 1 1 0 0
SCRT1 WILD-TYPE 9 16 6 11 6 5
'OBSCN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S547.  Gene #71: 'OBSCN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
OBSCN MUTATED 9 6 1 2 2
OBSCN WILD-TYPE 12 13 7 6 4
'OBSCN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S548.  Gene #71: 'OBSCN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
OBSCN MUTATED 4 5 2 5 2
OBSCN WILD-TYPE 9 3 12 9 5
'OBSCN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S549.  Gene #71: 'OBSCN MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
OBSCN MUTATED 7 2 6 3
OBSCN WILD-TYPE 10 6 8 13
'OBSCN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S550.  Gene #71: 'OBSCN MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
OBSCN MUTATED 5 5 3 5
OBSCN WILD-TYPE 11 11 2 13
'OBSCN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0945 (Fisher's exact test), Q value = 1

Table S551.  Gene #71: 'OBSCN MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
OBSCN MUTATED 7 7 4
OBSCN WILD-TYPE 19 5 14
'OBSCN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S552.  Gene #71: 'OBSCN MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
OBSCN MUTATED 3 6 3 6 0
OBSCN WILD-TYPE 10 13 5 8 2
'OBSCN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 1

Table S553.  Gene #71: 'OBSCN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
OBSCN MUTATED 7 7 4
OBSCN WILD-TYPE 20 6 12
'OBSCN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S554.  Gene #71: 'OBSCN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
OBSCN MUTATED 2 4 2 6 2 2
OBSCN WILD-TYPE 7 13 5 6 4 3
'IER5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S555.  Gene #72: 'IER5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
IER5 MUTATED 3 0 0 0 0
IER5 WILD-TYPE 18 19 8 8 6
'TNIP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S556.  Gene #73: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
TNIP2 MUTATED 2 1 0 1 1
TNIP2 WILD-TYPE 19 18 8 7 5
'TNIP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S557.  Gene #73: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
TNIP2 MUTATED 1 1 2 0 0
TNIP2 WILD-TYPE 12 7 12 14 7
'TNIP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S558.  Gene #73: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
TNIP2 MUTATED 1 0 2 1
TNIP2 WILD-TYPE 16 8 12 15
'TNIP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S559.  Gene #73: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
TNIP2 MUTATED 1 2 0 1
TNIP2 WILD-TYPE 15 14 5 17
'TNIP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S560.  Gene #73: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
TNIP2 MUTATED 2 1 1
TNIP2 WILD-TYPE 24 11 17
'TNIP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S561.  Gene #73: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
TNIP2 MUTATED 1 0 1 2 0
TNIP2 WILD-TYPE 12 19 7 12 2
'TNIP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S562.  Gene #73: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
TNIP2 MUTATED 2 1 1
TNIP2 WILD-TYPE 25 12 15
'TNIP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S563.  Gene #73: 'TNIP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
TNIP2 MUTATED 1 0 0 2 0 1
TNIP2 WILD-TYPE 8 17 7 10 6 4
'NOTCH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S564.  Gene #74: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
NOTCH2 MUTATED 4 1 0 2 0
NOTCH2 WILD-TYPE 17 18 8 6 6
'NOTCH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S565.  Gene #74: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
NOTCH2 MUTATED 1 0 2 2 0
NOTCH2 WILD-TYPE 12 8 12 12 7
'NOTCH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S566.  Gene #74: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
NOTCH2 MUTATED 3 1 1 0
NOTCH2 WILD-TYPE 14 7 13 16
'NOTCH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0338 (Fisher's exact test), Q value = 1

Table S567.  Gene #74: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
NOTCH2 MUTATED 1 2 2 0
NOTCH2 WILD-TYPE 15 14 3 18

Figure S43.  Get High-res Image Gene #74: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'NOTCH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00835 (Fisher's exact test), Q value = 1

Table S568.  Gene #74: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
NOTCH2 MUTATED 1 4 0
NOTCH2 WILD-TYPE 25 8 18

Figure S44.  Get High-res Image Gene #74: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'NOTCH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S569.  Gene #74: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
NOTCH2 MUTATED 0 2 0 3 0
NOTCH2 WILD-TYPE 13 17 8 11 2
'NOTCH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00893 (Fisher's exact test), Q value = 1

Table S570.  Gene #74: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
NOTCH2 MUTATED 1 4 0
NOTCH2 WILD-TYPE 26 9 16

Figure S45.  Get High-res Image Gene #74: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'NOTCH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.325 (Fisher's exact test), Q value = 1

Table S571.  Gene #74: 'NOTCH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
NOTCH2 MUTATED 0 1 0 3 1 0
NOTCH2 WILD-TYPE 9 16 7 9 5 5
'RASIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S572.  Gene #75: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
RASIP1 MUTATED 3 2 2 0 0
RASIP1 WILD-TYPE 18 17 6 8 6
'RASIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S573.  Gene #75: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
RASIP1 MUTATED 2 2 2 1 0
RASIP1 WILD-TYPE 11 6 12 13 7
'RASIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0391 (Fisher's exact test), Q value = 1

Table S574.  Gene #75: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
RASIP1 MUTATED 3 3 1 0
RASIP1 WILD-TYPE 14 5 13 16

Figure S46.  Get High-res Image Gene #75: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'RASIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 1

Table S575.  Gene #75: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
RASIP1 MUTATED 3 3 1 0
RASIP1 WILD-TYPE 13 13 4 18
'RASIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.022 (Fisher's exact test), Q value = 1

Table S576.  Gene #75: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
RASIP1 MUTATED 3 4 0
RASIP1 WILD-TYPE 23 8 18

Figure S47.  Get High-res Image Gene #75: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'RASIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.686 (Fisher's exact test), Q value = 1

Table S577.  Gene #75: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
RASIP1 MUTATED 1 3 0 3 0
RASIP1 WILD-TYPE 12 16 8 11 2
'RASIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0377 (Fisher's exact test), Q value = 1

Table S578.  Gene #75: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
RASIP1 MUTATED 3 4 0
RASIP1 WILD-TYPE 24 9 16

Figure S48.  Get High-res Image Gene #75: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'RASIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S579.  Gene #75: 'RASIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
RASIP1 MUTATED 1 2 0 3 1 0
RASIP1 WILD-TYPE 8 15 7 9 5 5
'NMU MUTATION STATUS' versus 'CN_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S580.  Gene #76: 'NMU MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
NMU MUTATED 1 2 1 0 0
NMU WILD-TYPE 20 17 7 8 6
'NMU MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S581.  Gene #76: 'NMU MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
NMU MUTATED 1 1 1 1 0
NMU WILD-TYPE 12 7 13 13 7
'NMU MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0485 (Fisher's exact test), Q value = 1

Table S582.  Gene #76: 'NMU MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
NMU MUTATED 0 2 0 1
NMU WILD-TYPE 17 6 14 15

Figure S49.  Get High-res Image Gene #76: 'NMU MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'NMU MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S583.  Gene #76: 'NMU MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
NMU MUTATED 0 2 0 1
NMU WILD-TYPE 16 14 5 17
'NMU MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S584.  Gene #76: 'NMU MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
NMU MUTATED 2 1 1
NMU WILD-TYPE 24 11 17
'NMU MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S585.  Gene #76: 'NMU MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
NMU MUTATED 2 2 0 0 0
NMU WILD-TYPE 11 17 8 14 2
'NMU MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S586.  Gene #76: 'NMU MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
NMU MUTATED 2 1 1
NMU WILD-TYPE 25 12 15
'NMU MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S587.  Gene #76: 'NMU MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
NMU MUTATED 2 2 0 0 0 0
NMU WILD-TYPE 7 15 7 12 6 5
'VARS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S588.  Gene #77: 'VARS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
VARS MUTATED 1 2 1 2 0
VARS WILD-TYPE 20 17 7 6 6
'VARS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S589.  Gene #77: 'VARS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
VARS MUTATED 0 1 3 2 0
VARS WILD-TYPE 13 7 11 12 7
'VARS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S590.  Gene #77: 'VARS MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
VARS MUTATED 1 0 4 1
VARS WILD-TYPE 16 8 10 15
'VARS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0818 (Fisher's exact test), Q value = 1

Table S591.  Gene #77: 'VARS MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
VARS MUTATED 0 4 1 1
VARS WILD-TYPE 16 12 4 17
'VARS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S592.  Gene #77: 'VARS MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
VARS MUTATED 2 2 2
VARS WILD-TYPE 24 10 16
'VARS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S593.  Gene #77: 'VARS MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
VARS MUTATED 2 2 0 2 0
VARS WILD-TYPE 11 17 8 12 2
'VARS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S594.  Gene #77: 'VARS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
VARS MUTATED 2 3 1
VARS WILD-TYPE 25 10 15
'VARS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S595.  Gene #77: 'VARS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
VARS MUTATED 2 2 0 2 0 0
VARS WILD-TYPE 7 15 7 10 6 5
'SHOX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 1

Table S596.  Gene #78: 'SHOX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
SHOX2 MUTATED 2 0 0 0 1
SHOX2 WILD-TYPE 19 19 8 8 5
'HSD17B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S597.  Gene #79: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
HSD17B1 MUTATED 2 2 0 0 0
HSD17B1 WILD-TYPE 19 17 8 8 6
'HSD17B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S598.  Gene #79: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
HSD17B1 MUTATED 0 0 0 3 1
HSD17B1 WILD-TYPE 13 8 14 11 6
'HSD17B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S599.  Gene #79: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
HSD17B1 MUTATED 2 0 1 1
HSD17B1 WILD-TYPE 15 8 13 15
'HSD17B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0127 (Fisher's exact test), Q value = 1

Table S600.  Gene #79: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
HSD17B1 MUTATED 0 0 2 2
HSD17B1 WILD-TYPE 16 16 3 16

Figure S50.  Get High-res Image Gene #79: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'HSD17B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S601.  Gene #79: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
HSD17B1 MUTATED 2 1 1
HSD17B1 WILD-TYPE 24 11 17
'HSD17B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S602.  Gene #79: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
HSD17B1 MUTATED 1 1 0 2 0
HSD17B1 WILD-TYPE 12 18 8 12 2
'HSD17B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S603.  Gene #79: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
HSD17B1 MUTATED 2 1 1
HSD17B1 WILD-TYPE 25 12 15
'HSD17B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S604.  Gene #79: 'HSD17B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
HSD17B1 MUTATED 0 1 1 1 1 0
HSD17B1 WILD-TYPE 9 16 6 11 5 5
'COQ2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 1

Table S605.  Gene #80: 'COQ2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
COQ2 MUTATED 1 1 0 2 1
COQ2 WILD-TYPE 20 18 8 6 5
'COQ2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S606.  Gene #80: 'COQ2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
COQ2 MUTATED 0 1 1 1 1
COQ2 WILD-TYPE 13 7 13 13 6
'COQ2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 1

Table S607.  Gene #80: 'COQ2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
COQ2 MUTATED 0 1 2 1
COQ2 WILD-TYPE 17 7 12 15
'COQ2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S608.  Gene #80: 'COQ2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
COQ2 MUTATED 0 2 0 2
COQ2 WILD-TYPE 16 14 5 16
'COQ2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S609.  Gene #80: 'COQ2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
COQ2 MUTATED 2 1 1
COQ2 WILD-TYPE 24 11 17
'COQ2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.669 (Fisher's exact test), Q value = 1

Table S610.  Gene #80: 'COQ2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
COQ2 MUTATED 1 2 1 0 0
COQ2 WILD-TYPE 12 17 7 14 2
'COQ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S611.  Gene #80: 'COQ2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
COQ2 MUTATED 2 1 1
COQ2 WILD-TYPE 25 12 15
'COQ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S612.  Gene #80: 'COQ2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
COQ2 MUTATED 1 2 1 0 0 0
COQ2 WILD-TYPE 8 15 6 12 6 5
'KNDC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S613.  Gene #81: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
KNDC1 MUTATED 2 4 2 1 1
KNDC1 WILD-TYPE 19 15 6 7 5
'KNDC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S614.  Gene #81: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
KNDC1 MUTATED 0 2 2 2 3
KNDC1 WILD-TYPE 13 6 12 12 4
'KNDC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S615.  Gene #81: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
KNDC1 MUTATED 1 3 1 4
KNDC1 WILD-TYPE 16 5 13 12
'KNDC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S616.  Gene #81: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
KNDC1 MUTATED 1 2 1 5
KNDC1 WILD-TYPE 15 14 4 13
'KNDC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S617.  Gene #81: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
KNDC1 MUTATED 2 3 4
KNDC1 WILD-TYPE 24 9 14
'KNDC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 1

Table S618.  Gene #81: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
KNDC1 MUTATED 1 4 3 1 0
KNDC1 WILD-TYPE 12 15 5 13 2
'KNDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S619.  Gene #81: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
KNDC1 MUTATED 2 3 4
KNDC1 WILD-TYPE 25 10 12
'KNDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S620.  Gene #81: 'KNDC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
KNDC1 MUTATED 1 3 1 1 1 2
KNDC1 WILD-TYPE 8 14 6 11 5 3
'AR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 1

Table S621.  Gene #82: 'AR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
AR MUTATED 2 0 0 1 1
AR WILD-TYPE 19 19 8 7 5
'AR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S622.  Gene #82: 'AR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
AR MUTATED 2 0 1 0 0
AR WILD-TYPE 11 8 13 14 7
'AR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 1

Table S623.  Gene #82: 'AR MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
AR MUTATED 2 0 1 0
AR WILD-TYPE 15 8 13 16
'AR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 1

Table S624.  Gene #82: 'AR MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
AR MUTATED 2 1 0 0
AR WILD-TYPE 14 15 5 18
'AR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S625.  Gene #82: 'AR MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
AR MUTATED 2 1 0
AR WILD-TYPE 24 11 18
'AR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S626.  Gene #82: 'AR MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
AR MUTATED 1 1 0 1 0
AR WILD-TYPE 12 18 8 13 2
'AR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S627.  Gene #82: 'AR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
AR MUTATED 2 1 0
AR WILD-TYPE 25 12 16
'AR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S628.  Gene #82: 'AR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
AR MUTATED 1 1 0 1 0 0
AR WILD-TYPE 8 16 7 11 6 5
'KCTD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S629.  Gene #83: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
KCTD3 MUTATED 1 1 0 2 0
KCTD3 WILD-TYPE 20 18 8 6 6
'FZD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S630.  Gene #84: 'FZD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
FZD1 MUTATED 1 0 1 1 0
FZD1 WILD-TYPE 20 19 7 7 6
'ZC3H12D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0033 (Fisher's exact test), Q value = 1

Table S631.  Gene #85: 'ZC3H12D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
ZC3H12D MUTATED 0 0 0 3 0
ZC3H12D WILD-TYPE 21 19 8 5 6

Figure S51.  Get High-res Image Gene #85: 'ZC3H12D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KRTAP5-5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S632.  Gene #86: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
KRTAP5-5 MUTATED 1 1 1 2 0
KRTAP5-5 WILD-TYPE 20 18 7 6 6
'KRTAP5-5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S633.  Gene #86: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
KRTAP5-5 MUTATED 1 0 1 1 0
KRTAP5-5 WILD-TYPE 12 8 13 13 7
'KRTAP5-5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S634.  Gene #86: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
KRTAP5-5 MUTATED 2 1 0 0
KRTAP5-5 WILD-TYPE 15 7 14 16
'KRTAP5-5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 1

Table S635.  Gene #86: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
KRTAP5-5 MUTATED 1 1 1 0
KRTAP5-5 WILD-TYPE 15 15 4 18
'KRTAP5-5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S636.  Gene #86: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
KRTAP5-5 MUTATED 2 1 0
KRTAP5-5 WILD-TYPE 24 11 18
'KRTAP5-5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S637.  Gene #86: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
KRTAP5-5 MUTATED 0 1 0 1 1
KRTAP5-5 WILD-TYPE 13 18 8 13 1
'KRTAP5-5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S638.  Gene #86: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
KRTAP5-5 MUTATED 2 1 0
KRTAP5-5 WILD-TYPE 25 12 16
'KRTAP5-5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.056 (Fisher's exact test), Q value = 1

Table S639.  Gene #86: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
KRTAP5-5 MUTATED 0 0 0 1 2 0
KRTAP5-5 WILD-TYPE 9 17 7 11 4 5
'AKAP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0745 (Fisher's exact test), Q value = 1

Table S640.  Gene #87: 'AKAP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
AKAP2 MUTATED 1 0 0 2 1
AKAP2 WILD-TYPE 20 19 8 6 5
'AKAP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 1

Table S641.  Gene #87: 'AKAP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
AKAP2 MUTATED 0 0 2 2 0
AKAP2 WILD-TYPE 13 8 12 12 7
'AKAP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S642.  Gene #87: 'AKAP2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
AKAP2 MUTATED 1 0 2 1
AKAP2 WILD-TYPE 16 8 12 15
'AKAP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S643.  Gene #87: 'AKAP2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
AKAP2 MUTATED 0 2 1 1
AKAP2 WILD-TYPE 16 14 4 17
'AKAP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S644.  Gene #87: 'AKAP2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
AKAP2 MUTATED 1 1 2
AKAP2 WILD-TYPE 25 11 16
'AKAP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S645.  Gene #87: 'AKAP2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
AKAP2 MUTATED 1 3 0 0 0
AKAP2 WILD-TYPE 12 16 8 14 2
'AKAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S646.  Gene #87: 'AKAP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
AKAP2 MUTATED 1 2 1
AKAP2 WILD-TYPE 26 11 15
'AKAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S647.  Gene #87: 'AKAP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
AKAP2 MUTATED 1 2 0 0 1 0
AKAP2 WILD-TYPE 8 15 7 12 5 5
'KBTBD13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S648.  Gene #88: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
KBTBD13 MUTATED 5 3 0 1 0
KBTBD13 WILD-TYPE 16 16 8 7 6
'KBTBD13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S649.  Gene #88: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
KBTBD13 MUTATED 3 1 0 2 3
KBTBD13 WILD-TYPE 10 7 14 12 4
'KBTBD13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S650.  Gene #88: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
KBTBD13 MUTATED 4 1 1 3
KBTBD13 WILD-TYPE 13 7 13 13
'KBTBD13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 1

Table S651.  Gene #88: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
KBTBD13 MUTATED 4 0 1 4
KBTBD13 WILD-TYPE 12 16 4 14
'KBTBD13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S652.  Gene #88: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
KBTBD13 MUTATED 4 2 3
KBTBD13 WILD-TYPE 22 10 15
'KBTBD13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S653.  Gene #88: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
KBTBD13 MUTATED 0 4 2 3 0
KBTBD13 WILD-TYPE 13 15 6 11 2
'KBTBD13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S654.  Gene #88: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
KBTBD13 MUTATED 4 2 3
KBTBD13 WILD-TYPE 23 11 13
'KBTBD13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S655.  Gene #88: 'KBTBD13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
KBTBD13 MUTATED 0 4 1 2 1 1
KBTBD13 WILD-TYPE 9 13 6 10 5 4
'SPIRE2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S656.  Gene #89: 'SPIRE2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
SPIRE2 MUTATED 0 1 1 1 0
SPIRE2 WILD-TYPE 21 18 7 7 6
'SPIRE2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0267 (Fisher's exact test), Q value = 1

Table S657.  Gene #89: 'SPIRE2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
SPIRE2 MUTATED 1 0 0 0 2
SPIRE2 WILD-TYPE 12 8 14 14 5

Figure S52.  Get High-res Image Gene #89: 'SPIRE2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SPIRE2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S658.  Gene #89: 'SPIRE2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
SPIRE2 MUTATED 1 0 1 1
SPIRE2 WILD-TYPE 16 8 13 15
'SPIRE2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S659.  Gene #89: 'SPIRE2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
SPIRE2 MUTATED 1 0 0 2
SPIRE2 WILD-TYPE 15 16 5 16
'SPIRE2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S660.  Gene #89: 'SPIRE2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
SPIRE2 MUTATED 2 0 1
SPIRE2 WILD-TYPE 24 12 17
'SPIRE2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S661.  Gene #89: 'SPIRE2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
SPIRE2 MUTATED 0 1 1 1 0
SPIRE2 WILD-TYPE 13 18 7 13 2
'SPIRE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S662.  Gene #89: 'SPIRE2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
SPIRE2 MUTATED 2 0 1
SPIRE2 WILD-TYPE 25 13 15
'SPIRE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S663.  Gene #89: 'SPIRE2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
SPIRE2 MUTATED 0 1 1 1 0 0
SPIRE2 WILD-TYPE 9 16 6 11 6 5
'NPTX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S664.  Gene #90: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
NPTX1 MUTATED 2 0 0 0 1
NPTX1 WILD-TYPE 19 19 8 8 5
'NPTX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S665.  Gene #90: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
NPTX1 MUTATED 1 0 1 1 0
NPTX1 WILD-TYPE 12 8 13 13 7
'NPTX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S666.  Gene #90: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
NPTX1 MUTATED 1 0 1 1
NPTX1 WILD-TYPE 16 8 13 15
'NPTX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S667.  Gene #90: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
NPTX1 MUTATED 1 0 0 2
NPTX1 WILD-TYPE 15 16 5 16
'NPTX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.587 (Fisher's exact test), Q value = 1

Table S668.  Gene #90: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
NPTX1 MUTATED 1 0 2
NPTX1 WILD-TYPE 25 12 16
'NPTX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S669.  Gene #90: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
NPTX1 MUTATED 0 1 1 1 0
NPTX1 WILD-TYPE 13 18 7 13 2
'NPTX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S670.  Gene #90: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
NPTX1 MUTATED 1 0 2
NPTX1 WILD-TYPE 26 13 14
'NPTX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S671.  Gene #90: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
NPTX1 MUTATED 0 1 0 1 0 1
NPTX1 WILD-TYPE 9 16 7 11 6 4
'ADAD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 1

Table S672.  Gene #91: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
ADAD2 MUTATED 1 0 1 1 1
ADAD2 WILD-TYPE 20 19 7 7 5
'ADAD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S673.  Gene #91: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
ADAD2 MUTATED 0 0 2 1 1
ADAD2 WILD-TYPE 13 8 12 13 6
'ADAD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S674.  Gene #91: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
ADAD2 MUTATED 1 0 2 1
ADAD2 WILD-TYPE 16 8 12 15
'ADAD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 1

Table S675.  Gene #91: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
ADAD2 MUTATED 0 2 1 1
ADAD2 WILD-TYPE 16 14 4 17
'ADAD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0206 (Fisher's exact test), Q value = 1

Table S676.  Gene #91: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
ADAD2 MUTATED 0 3 1
ADAD2 WILD-TYPE 26 9 17

Figure S53.  Get High-res Image Gene #91: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'ADAD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S677.  Gene #91: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
ADAD2 MUTATED 0 3 0 1 0
ADAD2 WILD-TYPE 13 16 8 13 2
'ADAD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0196 (Fisher's exact test), Q value = 1

Table S678.  Gene #91: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
ADAD2 MUTATED 0 3 1
ADAD2 WILD-TYPE 27 10 15

Figure S54.  Get High-res Image Gene #91: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ADAD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S679.  Gene #91: 'ADAD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
ADAD2 MUTATED 0 2 0 1 1 0
ADAD2 WILD-TYPE 9 15 7 11 5 5
'SEZ6L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S680.  Gene #92: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
SEZ6L2 MUTATED 3 3 0 0 2
SEZ6L2 WILD-TYPE 18 16 8 8 4
'SEZ6L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S681.  Gene #92: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
SEZ6L2 MUTATED 2 2 1 1 0
SEZ6L2 WILD-TYPE 11 6 13 13 7
'SEZ6L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S682.  Gene #92: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
SEZ6L2 MUTATED 2 0 2 2
SEZ6L2 WILD-TYPE 15 8 12 14
'SEZ6L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S683.  Gene #92: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
SEZ6L2 MUTATED 2 2 0 2
SEZ6L2 WILD-TYPE 14 14 5 16
'SEZ6L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 1

Table S684.  Gene #92: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
SEZ6L2 MUTATED 4 0 2
SEZ6L2 WILD-TYPE 22 12 16
'SEZ6L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S685.  Gene #92: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
SEZ6L2 MUTATED 1 1 2 2 0
SEZ6L2 WILD-TYPE 12 18 6 12 2
'SEZ6L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S686.  Gene #92: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
SEZ6L2 MUTATED 4 0 2
SEZ6L2 WILD-TYPE 23 13 14
'SEZ6L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S687.  Gene #92: 'SEZ6L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
SEZ6L2 MUTATED 1 1 1 2 0 1
SEZ6L2 WILD-TYPE 8 16 6 10 6 4
'NEFH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0362 (Fisher's exact test), Q value = 1

Table S688.  Gene #93: 'NEFH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
NEFH MUTATED 6 0 1 0 0
NEFH WILD-TYPE 15 19 7 8 6

Figure S55.  Get High-res Image Gene #93: 'NEFH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NEFH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 1

Table S689.  Gene #93: 'NEFH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
NEFH MUTATED 3 0 0 2 0
NEFH WILD-TYPE 10 8 14 12 7
'NEFH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0236 (Fisher's exact test), Q value = 1

Table S690.  Gene #93: 'NEFH MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
NEFH MUTATED 4 0 0 0
NEFH WILD-TYPE 13 8 14 16

Figure S56.  Get High-res Image Gene #93: 'NEFH MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'NEFH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00825 (Fisher's exact test), Q value = 1

Table S691.  Gene #93: 'NEFH MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
NEFH MUTATED 2 0 2 0
NEFH WILD-TYPE 14 16 3 18

Figure S57.  Get High-res Image Gene #93: 'NEFH MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'NEFH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 1

Table S692.  Gene #93: 'NEFH MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
NEFH MUTATED 3 2 0
NEFH WILD-TYPE 23 10 18
'NEFH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S693.  Gene #93: 'NEFH MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
NEFH MUTATED 1 1 0 3 0
NEFH WILD-TYPE 12 18 8 11 2
'NEFH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S694.  Gene #93: 'NEFH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
NEFH MUTATED 3 2 0
NEFH WILD-TYPE 24 11 16
'NEFH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S695.  Gene #93: 'NEFH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
NEFH MUTATED 1 0 0 3 1 0
NEFH WILD-TYPE 8 17 7 9 5 5
'DLEU7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S696.  Gene #94: 'DLEU7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
DLEU7 MUTATED 2 0 1 0 0
DLEU7 WILD-TYPE 19 19 7 8 6
'AMDHD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0266 (Fisher's exact test), Q value = 1

Table S697.  Gene #95: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
AMDHD1 MUTATED 3 2 1 5 0
AMDHD1 WILD-TYPE 18 17 7 3 6

Figure S58.  Get High-res Image Gene #95: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'AMDHD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S698.  Gene #95: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
AMDHD1 MUTATED 1 1 4 2 1
AMDHD1 WILD-TYPE 12 7 10 12 6
'AMDHD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S699.  Gene #95: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
AMDHD1 MUTATED 3 2 3 1
AMDHD1 WILD-TYPE 14 6 11 15
'AMDHD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S700.  Gene #95: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
AMDHD1 MUTATED 1 4 2 2
AMDHD1 WILD-TYPE 15 12 3 16
'AMDHD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S701.  Gene #95: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
AMDHD1 MUTATED 3 4 2
AMDHD1 WILD-TYPE 23 8 16
'AMDHD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S702.  Gene #95: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
AMDHD1 MUTATED 1 4 1 3 0
AMDHD1 WILD-TYPE 12 15 7 11 2
'AMDHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0625 (Fisher's exact test), Q value = 1

Table S703.  Gene #95: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
AMDHD1 MUTATED 3 5 1
AMDHD1 WILD-TYPE 24 8 15
'AMDHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S704.  Gene #95: 'AMDHD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
AMDHD1 MUTATED 1 3 1 3 1 0
AMDHD1 WILD-TYPE 8 14 6 9 5 5
'GLTSCR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 1

Table S705.  Gene #96: 'GLTSCR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
GLTSCR2 MUTATED 4 0 0 1 0
GLTSCR2 WILD-TYPE 17 19 8 7 6
'GLTSCR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S706.  Gene #96: 'GLTSCR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
GLTSCR2 MUTATED 2 0 1 1 0
GLTSCR2 WILD-TYPE 11 8 13 13 7
'GLTSCR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 1

Table S707.  Gene #96: 'GLTSCR2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
GLTSCR2 MUTATED 3 0 1 0
GLTSCR2 WILD-TYPE 14 8 13 16
'GLTSCR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 1

Table S708.  Gene #96: 'GLTSCR2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
GLTSCR2 MUTATED 2 1 1 0
GLTSCR2 WILD-TYPE 14 15 4 18
'GLTSCR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S709.  Gene #96: 'GLTSCR2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
GLTSCR2 MUTATED 2 1 1
GLTSCR2 WILD-TYPE 24 11 17
'GLTSCR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S710.  Gene #96: 'GLTSCR2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
GLTSCR2 MUTATED 0 2 0 2 0
GLTSCR2 WILD-TYPE 13 17 8 12 2
'GLTSCR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 1

Table S711.  Gene #96: 'GLTSCR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
GLTSCR2 MUTATED 2 2 0
GLTSCR2 WILD-TYPE 25 11 16
'GLTSCR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S712.  Gene #96: 'GLTSCR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
GLTSCR2 MUTATED 0 1 0 2 1 0
GLTSCR2 WILD-TYPE 9 16 7 10 5 5
'PLEC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S713.  Gene #97: 'PLEC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
PLEC MUTATED 5 6 1 1 0
PLEC WILD-TYPE 16 13 7 7 6
'PLEC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S714.  Gene #97: 'PLEC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
PLEC MUTATED 2 2 1 3 2
PLEC WILD-TYPE 11 6 13 11 5
'PLEC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S715.  Gene #97: 'PLEC MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
PLEC MUTATED 2 0 5 3
PLEC WILD-TYPE 15 8 9 13
'PLEC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S716.  Gene #97: 'PLEC MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
PLEC MUTATED 2 4 0 4
PLEC WILD-TYPE 14 12 5 14
'PLEC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S717.  Gene #97: 'PLEC MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
PLEC MUTATED 6 2 2
PLEC WILD-TYPE 20 10 16
'PLEC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S718.  Gene #97: 'PLEC MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
PLEC MUTATED 4 2 2 2 0
PLEC WILD-TYPE 9 17 6 12 2
'PLEC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 1

Table S719.  Gene #97: 'PLEC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
PLEC MUTATED 7 1 2
PLEC WILD-TYPE 20 12 14
'PLEC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 1

Table S720.  Gene #97: 'PLEC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
PLEC MUTATED 2 2 3 2 0 1
PLEC WILD-TYPE 7 15 4 10 6 4
'MAP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S721.  Gene #98: 'MAP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
MAP7 MUTATED 2 1 0 0 0
MAP7 WILD-TYPE 19 18 8 8 6
'MAP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.697 (Fisher's exact test), Q value = 1

Table S722.  Gene #98: 'MAP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
MAP7 MUTATED 1 0 0 1 1
MAP7 WILD-TYPE 12 8 14 13 6
'MAP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S723.  Gene #98: 'MAP7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
MAP7 MUTATED 1 0 1 1
MAP7 WILD-TYPE 16 8 13 15
'MAP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S724.  Gene #98: 'MAP7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
MAP7 MUTATED 1 0 0 2
MAP7 WILD-TYPE 15 16 5 16
'MAP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 1

Table S725.  Gene #98: 'MAP7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
MAP7 MUTATED 1 0 2
MAP7 WILD-TYPE 25 12 16
'MAP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S726.  Gene #98: 'MAP7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
MAP7 MUTATED 0 1 1 1 0
MAP7 WILD-TYPE 13 18 7 13 2
'MAP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 1

Table S727.  Gene #98: 'MAP7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
MAP7 MUTATED 1 0 2
MAP7 WILD-TYPE 26 13 14
'MAP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S728.  Gene #98: 'MAP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
MAP7 MUTATED 0 1 0 1 0 1
MAP7 WILD-TYPE 9 16 7 11 6 4
'DSPP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S729.  Gene #99: 'DSPP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
DSPP MUTATED 4 4 1 1 0
DSPP WILD-TYPE 17 15 7 7 6
'DSPP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.064 (Fisher's exact test), Q value = 1

Table S730.  Gene #99: 'DSPP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
DSPP MUTATED 1 4 1 3 0
DSPP WILD-TYPE 12 4 13 11 7
'DSPP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S731.  Gene #99: 'DSPP MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
DSPP MUTATED 3 1 2 3
DSPP WILD-TYPE 14 7 12 13
'DSPP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S732.  Gene #99: 'DSPP MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
DSPP MUTATED 4 1 1 3
DSPP WILD-TYPE 12 15 4 15
'DSPP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S733.  Gene #99: 'DSPP MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
DSPP MUTATED 3 3 3
DSPP WILD-TYPE 23 9 15
'DSPP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S734.  Gene #99: 'DSPP MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
DSPP MUTATED 1 4 1 2 1
DSPP WILD-TYPE 12 15 7 12 1
'DSPP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S735.  Gene #99: 'DSPP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
DSPP MUTATED 3 4 2
DSPP WILD-TYPE 24 9 14
'DSPP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 1

Table S736.  Gene #99: 'DSPP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
DSPP MUTATED 1 3 1 1 3 0
DSPP WILD-TYPE 8 14 6 11 3 5
'CRIPAK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S737.  Gene #100: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
CRIPAK MUTATED 1 4 1 3 1
CRIPAK WILD-TYPE 20 15 7 5 5
'CRIPAK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S738.  Gene #100: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
CRIPAK MUTATED 2 1 2 2 2
CRIPAK WILD-TYPE 11 7 12 12 5
'CRIPAK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S739.  Gene #100: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
CRIPAK MUTATED 2 0 3 4
CRIPAK WILD-TYPE 15 8 11 12
'CRIPAK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S740.  Gene #100: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
CRIPAK MUTATED 2 2 1 4
CRIPAK WILD-TYPE 14 14 4 14
'CRIPAK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S741.  Gene #100: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
CRIPAK MUTATED 5 1 3
CRIPAK WILD-TYPE 21 11 15
'CRIPAK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.359 (Fisher's exact test), Q value = 1

Table S742.  Gene #100: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
CRIPAK MUTATED 1 4 3 1 0
CRIPAK WILD-TYPE 12 15 5 13 2
'CRIPAK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S743.  Gene #100: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
CRIPAK MUTATED 5 1 3
CRIPAK WILD-TYPE 22 12 13
'CRIPAK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S744.  Gene #100: 'CRIPAK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
CRIPAK MUTATED 1 4 3 1 0 0
CRIPAK WILD-TYPE 8 13 4 11 6 5
'PRKAR1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S745.  Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
PRKAR1A MUTATED 2 1 1 2 0
PRKAR1A WILD-TYPE 19 18 7 6 6
'PRKAR1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S746.  Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
PRKAR1A MUTATED 1 1 2 1 1
PRKAR1A WILD-TYPE 12 7 12 13 6
'PRKAR1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S747.  Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
PRKAR1A MUTATED 2 1 3 0
PRKAR1A WILD-TYPE 15 7 11 16
'PRKAR1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S748.  Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
PRKAR1A MUTATED 1 3 1 1
PRKAR1A WILD-TYPE 15 13 4 17
'PRKAR1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0865 (Fisher's exact test), Q value = 1

Table S749.  Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
PRKAR1A MUTATED 5 1 0
PRKAR1A WILD-TYPE 21 11 18
'PRKAR1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 1

Table S750.  Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
PRKAR1A MUTATED 3 1 1 1 0
PRKAR1A WILD-TYPE 10 18 7 13 2
'PRKAR1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 1

Table S751.  Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
PRKAR1A MUTATED 5 1 0
PRKAR1A WILD-TYPE 22 12 16
'PRKAR1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S752.  Gene #101: 'PRKAR1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
PRKAR1A MUTATED 3 1 1 0 1 0
PRKAR1A WILD-TYPE 6 16 6 12 5 5
'CYP4A22 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S753.  Gene #102: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
CYP4A22 MUTATED 1 0 2 1 0
CYP4A22 WILD-TYPE 20 19 6 7 6
'CYP4A22 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S754.  Gene #102: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
CYP4A22 MUTATED 1 1 2 0 0
CYP4A22 WILD-TYPE 12 7 12 14 7
'CYP4A22 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S755.  Gene #102: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
CYP4A22 MUTATED 1 2 1 0
CYP4A22 WILD-TYPE 16 6 13 16
'CYP4A22 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S756.  Gene #102: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
CYP4A22 MUTATED 2 2 0 0
CYP4A22 WILD-TYPE 14 14 5 18
'CYP4A22 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 1

Table S757.  Gene #102: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
CYP4A22 MUTATED 2 2 0
CYP4A22 WILD-TYPE 24 10 18
'CYP4A22 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S758.  Gene #102: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
CYP4A22 MUTATED 0 2 0 1 1
CYP4A22 WILD-TYPE 13 17 8 13 1
'CYP4A22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S759.  Gene #102: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
CYP4A22 MUTATED 2 2 0
CYP4A22 WILD-TYPE 25 11 16
'CYP4A22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S760.  Gene #102: 'CYP4A22 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
CYP4A22 MUTATED 0 2 0 1 1 0
CYP4A22 WILD-TYPE 9 15 7 11 5 5
'NOM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S761.  Gene #103: 'NOM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
NOM1 MUTATED 2 2 1 1 0
NOM1 WILD-TYPE 19 17 7 7 6
'NOM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S762.  Gene #103: 'NOM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
NOM1 MUTATED 1 1 1 0 2
NOM1 WILD-TYPE 12 7 13 14 5
'NOM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S763.  Gene #103: 'NOM1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
NOM1 MUTATED 2 0 1 2
NOM1 WILD-TYPE 15 8 13 14
'NOM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S764.  Gene #103: 'NOM1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
NOM1 MUTATED 2 1 0 2
NOM1 WILD-TYPE 14 15 5 16
'NOM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S765.  Gene #103: 'NOM1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
NOM1 MUTATED 2 1 2
NOM1 WILD-TYPE 24 11 16
'NOM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S766.  Gene #103: 'NOM1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
NOM1 MUTATED 2 1 1 1 0
NOM1 WILD-TYPE 11 18 7 13 2
'NOM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S767.  Gene #103: 'NOM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
NOM1 MUTATED 2 1 2
NOM1 WILD-TYPE 25 12 14
'NOM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 1

Table S768.  Gene #103: 'NOM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
NOM1 MUTATED 2 1 0 0 1 1
NOM1 WILD-TYPE 7 16 7 12 5 4
'RNF135 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S769.  Gene #104: 'RNF135 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
RNF135 MUTATED 1 2 0 0 0
RNF135 WILD-TYPE 20 17 8 8 6
'C12ORF65 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S770.  Gene #105: 'C12ORF65 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
C12ORF65 MUTATED 3 0 0 0 0
C12ORF65 WILD-TYPE 18 19 8 8 6
'C12ORF65 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0354 (Fisher's exact test), Q value = 1

Table S771.  Gene #105: 'C12ORF65 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
C12ORF65 MUTATED 3 0 0 0 0
C12ORF65 WILD-TYPE 10 8 14 14 7

Figure S59.  Get High-res Image Gene #105: 'C12ORF65 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C12ORF65 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S772.  Gene #105: 'C12ORF65 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
C12ORF65 MUTATED 3 0 0 0
C12ORF65 WILD-TYPE 14 8 14 16
'C12ORF65 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0623 (Fisher's exact test), Q value = 1

Table S773.  Gene #105: 'C12ORF65 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
C12ORF65 MUTATED 3 0 0 0
C12ORF65 WILD-TYPE 13 16 5 18
'C12ORF65 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S774.  Gene #105: 'C12ORF65 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
C12ORF65 MUTATED 2 1 0
C12ORF65 WILD-TYPE 24 11 18
'C12ORF65 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S775.  Gene #105: 'C12ORF65 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
C12ORF65 MUTATED 0 1 0 2 0
C12ORF65 WILD-TYPE 13 18 8 12 2
'C12ORF65 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S776.  Gene #105: 'C12ORF65 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
C12ORF65 MUTATED 2 1 0
C12ORF65 WILD-TYPE 25 12 16
'C12ORF65 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S777.  Gene #105: 'C12ORF65 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
C12ORF65 MUTATED 0 1 0 2 0 0
C12ORF65 WILD-TYPE 9 16 7 10 6 5
'HLA-B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 1

Table S778.  Gene #106: 'HLA-B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
HLA-B MUTATED 1 1 1 2 1
HLA-B WILD-TYPE 20 18 7 6 5
'HLA-B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S779.  Gene #106: 'HLA-B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
HLA-B MUTATED 2 0 2 2 0
HLA-B WILD-TYPE 11 8 12 12 7
'HLA-B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S780.  Gene #106: 'HLA-B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
HLA-B MUTATED 2 0 2 2
HLA-B WILD-TYPE 15 8 12 14
'HLA-B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S781.  Gene #106: 'HLA-B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
HLA-B MUTATED 2 2 0 2
HLA-B WILD-TYPE 14 14 5 16
'HLA-B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S782.  Gene #106: 'HLA-B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
HLA-B MUTATED 2 1 3
HLA-B WILD-TYPE 24 11 15
'HLA-B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S783.  Gene #106: 'HLA-B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
HLA-B MUTATED 3 3 0 0 0
HLA-B WILD-TYPE 10 16 8 14 2
'HLA-B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 1

Table S784.  Gene #106: 'HLA-B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
HLA-B MUTATED 2 1 3
HLA-B WILD-TYPE 25 12 13
'HLA-B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 1

Table S785.  Gene #106: 'HLA-B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
HLA-B MUTATED 2 3 0 0 0 1
HLA-B WILD-TYPE 7 14 7 12 6 4
'CSGALNACT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S786.  Gene #107: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
CSGALNACT2 MUTATED 1 2 0 0 0
CSGALNACT2 WILD-TYPE 20 17 8 8 6
'CSGALNACT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0256 (Fisher's exact test), Q value = 1

Table S787.  Gene #107: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
CSGALNACT2 MUTATED 1 0 0 0 2
CSGALNACT2 WILD-TYPE 12 8 14 14 5

Figure S60.  Get High-res Image Gene #107: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CSGALNACT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S788.  Gene #107: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
CSGALNACT2 MUTATED 1 0 0 2
CSGALNACT2 WILD-TYPE 16 8 14 14
'CSGALNACT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S789.  Gene #107: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
CSGALNACT2 MUTATED 1 0 0 2
CSGALNACT2 WILD-TYPE 15 16 5 16
'CSGALNACT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S790.  Gene #107: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
CSGALNACT2 MUTATED 1 0 2
CSGALNACT2 WILD-TYPE 25 12 16
'CSGALNACT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S791.  Gene #107: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
CSGALNACT2 MUTATED 0 2 0 1 0
CSGALNACT2 WILD-TYPE 13 17 8 13 2
'CSGALNACT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S792.  Gene #107: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
CSGALNACT2 MUTATED 1 0 2
CSGALNACT2 WILD-TYPE 26 13 14
'CSGALNACT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S793.  Gene #107: 'CSGALNACT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
CSGALNACT2 MUTATED 0 2 0 1 0 0
CSGALNACT2 WILD-TYPE 9 15 7 11 6 5
'UQCRFS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S794.  Gene #108: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
UQCRFS1 MUTATED 1 1 1 0 1
UQCRFS1 WILD-TYPE 20 18 7 8 5
'UQCRFS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 1

Table S795.  Gene #108: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
UQCRFS1 MUTATED 2 1 2 0 0
UQCRFS1 WILD-TYPE 11 7 12 14 7
'UQCRFS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S796.  Gene #108: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
UQCRFS1 MUTATED 1 1 1 1
UQCRFS1 WILD-TYPE 16 7 13 15
'UQCRFS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S797.  Gene #108: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
UQCRFS1 MUTATED 1 2 0 1
UQCRFS1 WILD-TYPE 15 14 5 17
'UQCRFS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S798.  Gene #108: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
UQCRFS1 MUTATED 4 0 1
UQCRFS1 WILD-TYPE 22 12 17
'UQCRFS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 1

Table S799.  Gene #108: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
UQCRFS1 MUTATED 3 0 1 1 0
UQCRFS1 WILD-TYPE 10 19 7 13 2
'UQCRFS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S800.  Gene #108: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
UQCRFS1 MUTATED 4 0 1
UQCRFS1 WILD-TYPE 23 13 15
'UQCRFS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0508 (Fisher's exact test), Q value = 1

Table S801.  Gene #108: 'UQCRFS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
UQCRFS1 MUTATED 3 0 0 1 0 1
UQCRFS1 WILD-TYPE 6 17 7 11 6 4
'PDCD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S802.  Gene #109: 'PDCD6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
PDCD6 MUTATED 0 1 1 1 0
PDCD6 WILD-TYPE 21 18 7 7 6
'PDCD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S803.  Gene #109: 'PDCD6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
PDCD6 MUTATED 1 0 0 1 1
PDCD6 WILD-TYPE 12 8 14 13 6
'PDCD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S804.  Gene #109: 'PDCD6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
PDCD6 MUTATED 2 0 1
PDCD6 WILD-TYPE 24 12 17
'PDCD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S805.  Gene #109: 'PDCD6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
PDCD6 MUTATED 1 1 1 0 0
PDCD6 WILD-TYPE 12 18 7 14 2
'PDCD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S806.  Gene #109: 'PDCD6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
PDCD6 MUTATED 2 0 1
PDCD6 WILD-TYPE 25 13 15
'PDCD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 1

Table S807.  Gene #109: 'PDCD6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
PDCD6 MUTATED 1 1 1 0 0 0
PDCD6 WILD-TYPE 8 16 6 12 6 5
'PTX4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S808.  Gene #110: 'PTX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
PTX4 MUTATED 2 0 0 1 0
PTX4 WILD-TYPE 19 19 8 7 6
'PTX4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S809.  Gene #110: 'PTX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
PTX4 MUTATED 1 0 1 1 0
PTX4 WILD-TYPE 12 8 13 13 7
'PTX4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S810.  Gene #110: 'PTX4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
PTX4 MUTATED 2 0 1 0
PTX4 WILD-TYPE 15 8 13 16
'PTX4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 1

Table S811.  Gene #110: 'PTX4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
PTX4 MUTATED 1 1 1 0
PTX4 WILD-TYPE 15 15 4 18
'PTX4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S812.  Gene #110: 'PTX4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
PTX4 MUTATED 2 1 0
PTX4 WILD-TYPE 24 11 18
'PTX4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S813.  Gene #110: 'PTX4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
PTX4 MUTATED 1 1 0 1 0
PTX4 WILD-TYPE 12 18 8 13 2
'PTX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S814.  Gene #110: 'PTX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
PTX4 MUTATED 2 1 0
PTX4 WILD-TYPE 25 12 16
'PTX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S815.  Gene #110: 'PTX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
PTX4 MUTATED 1 0 0 1 1 0
PTX4 WILD-TYPE 8 17 7 11 5 5
'SGK223 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S816.  Gene #111: 'SGK223 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
SGK223 MUTATED 1 2 0 0 0
SGK223 WILD-TYPE 20 17 8 8 6
'POLRMT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S817.  Gene #112: 'POLRMT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
POLRMT MUTATED 1 1 0 1 1
POLRMT WILD-TYPE 20 18 8 7 5
'POLRMT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0363 (Fisher's exact test), Q value = 1

Table S818.  Gene #112: 'POLRMT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
POLRMT MUTATED 0 0 0 2 2
POLRMT WILD-TYPE 13 8 14 12 5

Figure S61.  Get High-res Image Gene #112: 'POLRMT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'POLRMT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 1

Table S819.  Gene #112: 'POLRMT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
POLRMT MUTATED 0 0 2 2
POLRMT WILD-TYPE 17 8 12 14
'POLRMT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0737 (Fisher's exact test), Q value = 1

Table S820.  Gene #112: 'POLRMT MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
POLRMT MUTATED 0 0 0 4
POLRMT WILD-TYPE 16 16 5 14
'POLRMT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S821.  Gene #112: 'POLRMT MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
POLRMT MUTATED 1 0 3
POLRMT WILD-TYPE 25 12 15
'POLRMT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S822.  Gene #112: 'POLRMT MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
POLRMT MUTATED 0 3 1 0 0
POLRMT WILD-TYPE 13 16 7 14 2
'POLRMT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S823.  Gene #112: 'POLRMT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
POLRMT MUTATED 1 0 3
POLRMT WILD-TYPE 26 13 13
'POLRMT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S824.  Gene #112: 'POLRMT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
POLRMT MUTATED 0 3 1 0 0 0
POLRMT WILD-TYPE 9 14 6 12 6 5
'CACNA1D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S825.  Gene #113: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
CACNA1D MUTATED 2 0 0 1 0
CACNA1D WILD-TYPE 19 19 8 7 6
'NF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 1

Table S826.  Gene #114: 'NF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
NF1 MUTATED 3 1 0 3 0
NF1 WILD-TYPE 18 18 8 5 6
'NF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S827.  Gene #114: 'NF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
NF1 MUTATED 2 0 2 2 1
NF1 WILD-TYPE 11 8 12 12 6
'NF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S828.  Gene #114: 'NF1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
NF1 MUTATED 4 0 2 1
NF1 WILD-TYPE 13 8 12 15
'NF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 1

Table S829.  Gene #114: 'NF1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
NF1 MUTATED 2 2 2 1
NF1 WILD-TYPE 14 14 3 17
'NF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S830.  Gene #114: 'NF1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
NF1 MUTATED 2 3 2
NF1 WILD-TYPE 24 9 16
'NF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S831.  Gene #114: 'NF1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
NF1 MUTATED 1 2 1 3 0
NF1 WILD-TYPE 12 17 7 11 2
'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0999 (Fisher's exact test), Q value = 1

Table S832.  Gene #114: 'NF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
NF1 MUTATED 2 4 1
NF1 WILD-TYPE 25 9 15
'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S833.  Gene #114: 'NF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
NF1 MUTATED 1 1 0 3 1 1
NF1 WILD-TYPE 8 16 7 9 5 4
'RGMB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S834.  Gene #115: 'RGMB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
RGMB MUTATED 2 2 2 0 0
RGMB WILD-TYPE 19 17 6 8 6
'ADAMTS7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 1

Table S835.  Gene #116: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
ADAMTS7 MUTATED 0 3 0 0 1
ADAMTS7 WILD-TYPE 21 16 8 8 5
'ADAMTS7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S836.  Gene #116: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
ADAMTS7 MUTATED 0 0 1 2 1
ADAMTS7 WILD-TYPE 13 8 13 12 6
'ADAMTS7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0732 (Fisher's exact test), Q value = 1

Table S837.  Gene #116: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
ADAMTS7 MUTATED 0 1 0 3
ADAMTS7 WILD-TYPE 17 7 14 13
'ADAMTS7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S838.  Gene #116: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
ADAMTS7 MUTATED 0 1 0 3
ADAMTS7 WILD-TYPE 16 15 5 15
'ADAMTS7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.061 (Fisher's exact test), Q value = 1

Table S839.  Gene #116: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
ADAMTS7 MUTATED 0 1 3
ADAMTS7 WILD-TYPE 26 11 15
'ADAMTS7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S840.  Gene #116: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
ADAMTS7 MUTATED 0 3 1 0 0
ADAMTS7 WILD-TYPE 13 16 7 14 2
'ADAMTS7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.038 (Fisher's exact test), Q value = 1

Table S841.  Gene #116: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
ADAMTS7 MUTATED 0 1 3
ADAMTS7 WILD-TYPE 27 12 13

Figure S62.  Get High-res Image Gene #116: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ADAMTS7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S842.  Gene #116: 'ADAMTS7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
ADAMTS7 MUTATED 0 3 0 0 0 1
ADAMTS7 WILD-TYPE 9 14 7 12 6 4
'CLIC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S843.  Gene #117: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
CLIC6 MUTATED 3 2 0 1 0
CLIC6 WILD-TYPE 18 17 8 7 6
'CLIC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S844.  Gene #117: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
CLIC6 MUTATED 1 1 1 1 0
CLIC6 WILD-TYPE 12 7 13 13 7
'CLIC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S845.  Gene #117: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
CLIC6 MUTATED 2 1 0 1
CLIC6 WILD-TYPE 15 7 14 15
'CLIC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S846.  Gene #117: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
CLIC6 MUTATED 2 1 1 0
CLIC6 WILD-TYPE 14 15 4 18
'CLIC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 1

Table S847.  Gene #117: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
CLIC6 MUTATED 2 2 0
CLIC6 WILD-TYPE 24 10 18
'CLIC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 1

Table S848.  Gene #117: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
CLIC6 MUTATED 0 1 1 2 0
CLIC6 WILD-TYPE 13 18 7 12 2
'CLIC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S849.  Gene #117: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
CLIC6 MUTATED 2 2 0
CLIC6 WILD-TYPE 25 11 16
'CLIC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S850.  Gene #117: 'CLIC6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
CLIC6 MUTATED 0 1 1 1 1 0
CLIC6 WILD-TYPE 9 16 6 11 5 5
'EMR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S851.  Gene #118: 'EMR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
EMR2 MUTATED 0 2 1 1 0
EMR2 WILD-TYPE 21 17 7 7 6
'EMR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S852.  Gene #118: 'EMR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
EMR2 MUTATED 0 0 3 1 0
EMR2 WILD-TYPE 13 8 11 13 7
'EMR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S853.  Gene #118: 'EMR2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
EMR2 MUTATED 0 1 1 2
EMR2 WILD-TYPE 17 7 13 14
'EMR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S854.  Gene #118: 'EMR2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
EMR2 MUTATED 0 2 0 2
EMR2 WILD-TYPE 16 14 5 16
'EMR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S855.  Gene #118: 'EMR2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
EMR2 MUTATED 1 1 2
EMR2 WILD-TYPE 25 11 16
'EMR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S856.  Gene #118: 'EMR2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
EMR2 MUTATED 0 2 0 1 1
EMR2 WILD-TYPE 13 17 8 13 1
'EMR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S857.  Gene #118: 'EMR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
EMR2 MUTATED 1 1 2
EMR2 WILD-TYPE 26 12 14
'EMR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S858.  Gene #118: 'EMR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
EMR2 MUTATED 0 2 0 1 1 0
EMR2 WILD-TYPE 9 15 7 11 5 5
'PCDHB13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S859.  Gene #119: 'PCDHB13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
PCDHB13 MUTATED 1 1 1 1 1
PCDHB13 WILD-TYPE 20 18 7 7 5
'PCDHB13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S860.  Gene #119: 'PCDHB13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
PCDHB13 MUTATED 0 1 3 0 0
PCDHB13 WILD-TYPE 13 7 11 14 7
'PCDHB13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S861.  Gene #119: 'PCDHB13 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
PCDHB13 MUTATED 0 0 3 1
PCDHB13 WILD-TYPE 17 8 11 15
'PCDHB13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S862.  Gene #119: 'PCDHB13 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
PCDHB13 MUTATED 0 3 0 1
PCDHB13 WILD-TYPE 16 13 5 17
'PCDHB13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S863.  Gene #119: 'PCDHB13 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
PCDHB13 MUTATED 3 0 1
PCDHB13 WILD-TYPE 23 12 17
'PCDHB13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0566 (Fisher's exact test), Q value = 1

Table S864.  Gene #119: 'PCDHB13 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
PCDHB13 MUTATED 3 0 1 0 0
PCDHB13 WILD-TYPE 10 19 7 14 2
'PCDHB13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S865.  Gene #119: 'PCDHB13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
PCDHB13 MUTATED 3 0 1
PCDHB13 WILD-TYPE 24 13 15
'PCDHB13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0126 (Fisher's exact test), Q value = 1

Table S866.  Gene #119: 'PCDHB13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
PCDHB13 MUTATED 3 0 0 0 0 1
PCDHB13 WILD-TYPE 6 17 7 12 6 4

Figure S63.  Get High-res Image Gene #119: 'PCDHB13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MTFMT MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S867.  Gene #120: 'MTFMT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
MTFMT MUTATED 2 1 0 0 0
MTFMT WILD-TYPE 19 18 8 8 6
'SPTAN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S868.  Gene #121: 'SPTAN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
SPTAN1 MUTATED 1 0 0 1 1
SPTAN1 WILD-TYPE 20 19 8 7 5
'HLA-A MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S869.  Gene #122: 'HLA-A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
HLA-A MUTATED 2 1 0 0 0
HLA-A WILD-TYPE 19 18 8 8 6
'HLA-A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S870.  Gene #122: 'HLA-A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
HLA-A MUTATED 1 0 1 1 0
HLA-A WILD-TYPE 12 8 13 13 7
'HLA-A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S871.  Gene #122: 'HLA-A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
HLA-A MUTATED 1 1 0 1
HLA-A WILD-TYPE 16 7 14 15
'HLA-A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S872.  Gene #122: 'HLA-A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
HLA-A MUTATED 1 1 1 0
HLA-A WILD-TYPE 15 15 4 18
'HLA-A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S873.  Gene #122: 'HLA-A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
HLA-A MUTATED 2 0 1
HLA-A WILD-TYPE 24 12 17
'HLA-A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S874.  Gene #122: 'HLA-A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
HLA-A MUTATED 1 0 1 1 0
HLA-A WILD-TYPE 12 19 7 13 2
'HLA-A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S875.  Gene #122: 'HLA-A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
HLA-A MUTATED 2 0 1
HLA-A WILD-TYPE 25 13 15
'HLA-A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S876.  Gene #122: 'HLA-A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
HLA-A MUTATED 0 0 1 1 0 1
HLA-A WILD-TYPE 9 17 6 11 6 4
'ASB16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S877.  Gene #123: 'ASB16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
ASB16 MUTATED 1 2 1 1 1
ASB16 WILD-TYPE 20 17 7 7 5
'ASB16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S878.  Gene #123: 'ASB16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
ASB16 MUTATED 1 0 1 1 1
ASB16 WILD-TYPE 12 8 13 13 6
'ASB16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S879.  Gene #123: 'ASB16 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
ASB16 MUTATED 1 1 0 2
ASB16 WILD-TYPE 16 7 14 14
'ASB16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S880.  Gene #123: 'ASB16 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
ASB16 MUTATED 1 2 0 1
ASB16 WILD-TYPE 15 14 5 17
'ASB16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S881.  Gene #123: 'ASB16 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
ASB16 MUTATED 3 0 1
ASB16 WILD-TYPE 23 12 17
'ASB16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S882.  Gene #123: 'ASB16 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
ASB16 MUTATED 2 1 0 1 0
ASB16 WILD-TYPE 11 18 8 13 2
'ASB16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S883.  Gene #123: 'ASB16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
ASB16 MUTATED 3 0 1
ASB16 WILD-TYPE 24 13 15
'ASB16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.959 (Fisher's exact test), Q value = 1

Table S884.  Gene #123: 'ASB16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
ASB16 MUTATED 1 1 1 1 0 0
ASB16 WILD-TYPE 8 16 6 11 6 5
'GPRIN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S885.  Gene #124: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
GPRIN2 MUTATED 2 3 2 2 0
GPRIN2 WILD-TYPE 19 16 6 6 6
'GPRIN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S886.  Gene #124: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
GPRIN2 MUTATED 1 0 4 1 1
GPRIN2 WILD-TYPE 12 8 10 13 6
'GPRIN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S887.  Gene #124: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
GPRIN2 MUTATED 1 1 3 2
GPRIN2 WILD-TYPE 16 7 11 14
'GPRIN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S888.  Gene #124: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
GPRIN2 MUTATED 1 4 0 2
GPRIN2 WILD-TYPE 15 12 5 16
'GPRIN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S889.  Gene #124: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
GPRIN2 MUTATED 2 2 3
GPRIN2 WILD-TYPE 24 10 15
'GPRIN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S890.  Gene #124: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
GPRIN2 MUTATED 1 4 1 1 0
GPRIN2 WILD-TYPE 12 15 7 13 2
'GPRIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S891.  Gene #124: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
GPRIN2 MUTATED 2 3 2
GPRIN2 WILD-TYPE 25 10 14
'GPRIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S892.  Gene #124: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
GPRIN2 MUTATED 1 4 0 1 0 1
GPRIN2 WILD-TYPE 8 13 7 11 6 4
'HNRNPCL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S893.  Gene #125: 'HNRNPCL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
HNRNPCL1 MUTATED 2 0 0 0 1
HNRNPCL1 WILD-TYPE 19 19 8 8 5
'BTNL9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 1

Table S894.  Gene #126: 'BTNL9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
BTNL9 MUTATED 1 1 0 2 0
BTNL9 WILD-TYPE 20 18 8 6 6
'BTNL9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0962 (Fisher's exact test), Q value = 1

Table S895.  Gene #126: 'BTNL9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
BTNL9 MUTATED 0 0 3 0 0
BTNL9 WILD-TYPE 13 8 11 14 7
'BTNL9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S896.  Gene #126: 'BTNL9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
BTNL9 MUTATED 0 1 2 0
BTNL9 WILD-TYPE 17 7 12 16
'BTNL9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0618 (Fisher's exact test), Q value = 1

Table S897.  Gene #126: 'BTNL9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
BTNL9 MUTATED 0 3 0 0
BTNL9 WILD-TYPE 16 13 5 18
'BTNL9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 1

Table S898.  Gene #126: 'BTNL9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
BTNL9 MUTATED 1 2 0
BTNL9 WILD-TYPE 25 10 18
'BTNL9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S899.  Gene #126: 'BTNL9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
BTNL9 MUTATED 1 1 0 1 0
BTNL9 WILD-TYPE 12 18 8 13 2
'BTNL9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S900.  Gene #126: 'BTNL9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
BTNL9 MUTATED 1 2 0
BTNL9 WILD-TYPE 26 11 16
'BTNL9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S901.  Gene #126: 'BTNL9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
BTNL9 MUTATED 1 1 0 1 0 0
BTNL9 WILD-TYPE 8 16 7 11 6 5
'KCNJ11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 1

Table S902.  Gene #127: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
KCNJ11 MUTATED 0 1 3 0 0
KCNJ11 WILD-TYPE 21 18 5 8 6

Figure S64.  Get High-res Image Gene #127: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KCNJ11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S903.  Gene #127: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
KCNJ11 MUTATED 1 1 2 0 0
KCNJ11 WILD-TYPE 12 7 12 14 7
'KCNJ11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S904.  Gene #127: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
KCNJ11 MUTATED 1 1 2 0
KCNJ11 WILD-TYPE 16 7 12 16
'KCNJ11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 1

Table S905.  Gene #127: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
KCNJ11 MUTATED 1 3 0 0
KCNJ11 WILD-TYPE 15 13 5 18
'KCNJ11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S906.  Gene #127: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
KCNJ11 MUTATED 4 0 0
KCNJ11 WILD-TYPE 22 12 18
'KCNJ11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0498 (Fisher's exact test), Q value = 1

Table S907.  Gene #127: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
KCNJ11 MUTATED 2 0 0 1 1
KCNJ11 WILD-TYPE 11 19 8 13 1

Figure S65.  Get High-res Image Gene #127: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'KCNJ11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 1

Table S908.  Gene #127: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
KCNJ11 MUTATED 4 0 0
KCNJ11 WILD-TYPE 23 13 16
'KCNJ11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 1

Table S909.  Gene #127: 'KCNJ11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
KCNJ11 MUTATED 2 0 0 1 1 0
KCNJ11 WILD-TYPE 7 17 7 11 5 5
'JMJD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S910.  Gene #128: 'JMJD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
JMJD4 MUTATED 1 1 1 0 0
JMJD4 WILD-TYPE 20 18 7 8 6
'LRRC4B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S911.  Gene #129: 'LRRC4B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
LRRC4B MUTATED 3 0 2 1 0
LRRC4B WILD-TYPE 18 19 6 7 6
'LRRC4B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S912.  Gene #129: 'LRRC4B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
LRRC4B MUTATED 4 0 1 1 0
LRRC4B WILD-TYPE 9 8 13 13 7
'LRRC4B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0133 (Fisher's exact test), Q value = 1

Table S913.  Gene #129: 'LRRC4B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
LRRC4B MUTATED 5 1 0 0
LRRC4B WILD-TYPE 12 7 14 16

Figure S66.  Get High-res Image Gene #129: 'LRRC4B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'LRRC4B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0708 (Fisher's exact test), Q value = 1

Table S914.  Gene #129: 'LRRC4B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
LRRC4B MUTATED 4 1 1 0
LRRC4B WILD-TYPE 12 15 4 18
'LRRC4B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 1

Table S915.  Gene #129: 'LRRC4B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
LRRC4B MUTATED 4 2 0
LRRC4B WILD-TYPE 22 10 18
'LRRC4B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0299 (Fisher's exact test), Q value = 1

Table S916.  Gene #129: 'LRRC4B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
LRRC4B MUTATED 0 1 0 4 1
LRRC4B WILD-TYPE 13 18 8 10 1

Figure S67.  Get High-res Image Gene #129: 'LRRC4B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'LRRC4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S917.  Gene #129: 'LRRC4B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
LRRC4B MUTATED 5 1 0
LRRC4B WILD-TYPE 22 12 16
'LRRC4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00974 (Fisher's exact test), Q value = 1

Table S918.  Gene #129: 'LRRC4B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
LRRC4B MUTATED 0 0 0 4 2 0
LRRC4B WILD-TYPE 9 17 7 8 4 5

Figure S68.  Get High-res Image Gene #129: 'LRRC4B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'OPLAH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S919.  Gene #130: 'OPLAH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
OPLAH MUTATED 2 0 1 0 0
OPLAH WILD-TYPE 19 19 7 8 6
'OPLAH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S920.  Gene #130: 'OPLAH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
OPLAH MUTATED 1 1 1 0 0
OPLAH WILD-TYPE 12 7 13 14 7
'OPLAH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 1

Table S921.  Gene #130: 'OPLAH MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
OPLAH MUTATED 2 0 1 0
OPLAH WILD-TYPE 15 8 13 16
'OPLAH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 1

Table S922.  Gene #130: 'OPLAH MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
OPLAH MUTATED 2 1 0 0
OPLAH WILD-TYPE 14 15 5 18
'OPLAH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S923.  Gene #130: 'OPLAH MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
OPLAH MUTATED 2 1 0
OPLAH WILD-TYPE 24 11 18
'OPLAH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S924.  Gene #130: 'OPLAH MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
OPLAH MUTATED 1 0 0 2 0
OPLAH WILD-TYPE 12 19 8 12 2
'OPLAH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S925.  Gene #130: 'OPLAH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
OPLAH MUTATED 2 1 0
OPLAH WILD-TYPE 25 12 16
'OPLAH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S926.  Gene #130: 'OPLAH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
OPLAH MUTATED 1 0 0 1 1 0
OPLAH WILD-TYPE 8 17 7 11 5 5
'BAGE2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S927.  Gene #131: 'BAGE2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
BAGE2 MUTATED 1 2 0 0 0
BAGE2 WILD-TYPE 20 17 8 8 6
'MADCAM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S928.  Gene #132: 'MADCAM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
MADCAM1 MUTATED 0 2 1 0 0
MADCAM1 WILD-TYPE 21 17 7 8 6
'MADCAM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 1

Table S929.  Gene #132: 'MADCAM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
MADCAM1 MUTATED 1 0 0 1 1
MADCAM1 WILD-TYPE 12 8 14 13 6
'MADCAM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S930.  Gene #132: 'MADCAM1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
MADCAM1 MUTATED 2 0 1
MADCAM1 WILD-TYPE 24 12 17
'MADCAM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S931.  Gene #132: 'MADCAM1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
MADCAM1 MUTATED 2 0 1 0 0
MADCAM1 WILD-TYPE 11 19 7 14 2
'MADCAM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S932.  Gene #132: 'MADCAM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
MADCAM1 MUTATED 2 0 1
MADCAM1 WILD-TYPE 25 13 15
'MADCAM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S933.  Gene #132: 'MADCAM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
MADCAM1 MUTATED 1 0 1 0 0 1
MADCAM1 WILD-TYPE 8 17 6 12 6 4
'CTBP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S934.  Gene #133: 'CTBP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
CTBP2 MUTATED 1 2 0 0 0
CTBP2 WILD-TYPE 20 17 8 8 6
'MSH3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0176 (Fisher's exact test), Q value = 1

Table S935.  Gene #134: 'MSH3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
MSH3 MUTATED 1 0 0 3 0
MSH3 WILD-TYPE 20 19 8 5 6

Figure S69.  Get High-res Image Gene #134: 'MSH3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MSH3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S936.  Gene #134: 'MSH3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
MSH3 MUTATED 1 0 1 0 1
MSH3 WILD-TYPE 12 8 13 14 6
'MSH3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S937.  Gene #134: 'MSH3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
MSH3 MUTATED 1 0 2 0
MSH3 WILD-TYPE 16 8 12 16
'MSH3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S938.  Gene #134: 'MSH3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
MSH3 MUTATED 1 1 0 1
MSH3 WILD-TYPE 15 15 5 17
'MSH3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S939.  Gene #134: 'MSH3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
MSH3 MUTATED 3 0 0
MSH3 WILD-TYPE 23 12 18
'MSH3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S940.  Gene #134: 'MSH3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
MSH3 MUTATED 1 0 1 1 0
MSH3 WILD-TYPE 12 19 7 13 2
'MSH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S941.  Gene #134: 'MSH3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
MSH3 MUTATED 3 0 0
MSH3 WILD-TYPE 24 13 16
'MSH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S942.  Gene #134: 'MSH3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
MSH3 MUTATED 1 0 1 1 0 0
MSH3 WILD-TYPE 8 17 6 11 6 5
'ATN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 1

Table S943.  Gene #135: 'ATN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
ATN1 MUTATED 0 2 0 2 0
ATN1 WILD-TYPE 21 17 8 6 6
'ATN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S944.  Gene #135: 'ATN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
ATN1 MUTATED 1 1 0 1 0
ATN1 WILD-TYPE 12 7 14 13 7
'ATN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S945.  Gene #135: 'ATN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
ATN1 MUTATED 1 1 0 1
ATN1 WILD-TYPE 16 7 14 15
'ATN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S946.  Gene #135: 'ATN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
ATN1 MUTATED 1 1 0 1
ATN1 WILD-TYPE 15 15 5 17
'ATN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S947.  Gene #135: 'ATN1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
ATN1 MUTATED 1 1 1
ATN1 WILD-TYPE 25 11 17
'ATN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S948.  Gene #135: 'ATN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
ATN1 MUTATED 1 2 0 0 0
ATN1 WILD-TYPE 12 17 8 14 2
'ATN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S949.  Gene #135: 'ATN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
ATN1 MUTATED 1 1 1
ATN1 WILD-TYPE 26 12 15
'ATN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S950.  Gene #135: 'ATN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
ATN1 MUTATED 1 2 0 0 0 0
ATN1 WILD-TYPE 8 15 7 12 6 5
'FAM46A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S951.  Gene #136: 'FAM46A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
FAM46A MUTATED 1 2 0 0 0
FAM46A WILD-TYPE 20 17 8 8 6
'UTS2R MUTATION STATUS' versus 'CN_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 1

Table S952.  Gene #137: 'UTS2R MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
UTS2R MUTATED 0 1 0 1 1
UTS2R WILD-TYPE 21 18 8 7 5
'UTS2R MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S953.  Gene #137: 'UTS2R MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
UTS2R MUTATED 1 0 0 1 1
UTS2R WILD-TYPE 12 8 14 13 6
'UTS2R MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S954.  Gene #137: 'UTS2R MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
UTS2R MUTATED 1 0 0 2
UTS2R WILD-TYPE 16 8 14 14
'UTS2R MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S955.  Gene #137: 'UTS2R MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
UTS2R MUTATED 1 0 0 2
UTS2R WILD-TYPE 15 16 5 16
'UTS2R MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.586 (Fisher's exact test), Q value = 1

Table S956.  Gene #137: 'UTS2R MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
UTS2R MUTATED 1 0 2
UTS2R WILD-TYPE 25 12 16
'UTS2R MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S957.  Gene #137: 'UTS2R MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
UTS2R MUTATED 1 2 0 0 0
UTS2R WILD-TYPE 12 17 8 14 2
'UTS2R MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S958.  Gene #137: 'UTS2R MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
UTS2R MUTATED 1 0 2
UTS2R WILD-TYPE 26 13 14
'UTS2R MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S959.  Gene #137: 'UTS2R MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
UTS2R MUTATED 1 2 0 0 0 0
UTS2R WILD-TYPE 8 15 7 12 6 5
'SMG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S960.  Gene #138: 'SMG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
SMG1 MUTATED 0 1 1 0 1
SMG1 WILD-TYPE 21 18 7 8 5
'SMG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S961.  Gene #138: 'SMG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
SMG1 MUTATED 0 2 1 0 0
SMG1 WILD-TYPE 13 6 13 14 7
'SMG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S962.  Gene #138: 'SMG1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
SMG1 MUTATED 0 1 2 0
SMG1 WILD-TYPE 17 7 12 16
'SMG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0621 (Fisher's exact test), Q value = 1

Table S963.  Gene #138: 'SMG1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
SMG1 MUTATED 0 3 0 0
SMG1 WILD-TYPE 16 13 5 18
'SMG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 1

Table S964.  Gene #138: 'SMG1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
SMG1 MUTATED 3 0 0
SMG1 WILD-TYPE 23 12 18
'SMG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0256 (Fisher's exact test), Q value = 1

Table S965.  Gene #138: 'SMG1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
SMG1 MUTATED 1 0 1 0 1
SMG1 WILD-TYPE 12 19 7 14 1

Figure S70.  Get High-res Image Gene #138: 'SMG1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'SMG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S966.  Gene #138: 'SMG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
SMG1 MUTATED 3 0 0
SMG1 WILD-TYPE 24 13 16
'SMG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S967.  Gene #138: 'SMG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
SMG1 MUTATED 1 0 1 0 1 0
SMG1 WILD-TYPE 8 17 6 12 5 5
'FUCA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S968.  Gene #139: 'FUCA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
FUCA1 MUTATED 1 0 1 1 0
FUCA1 WILD-TYPE 20 19 7 7 6
'FEZ2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S969.  Gene #140: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
FEZ2 MUTATED 0 2 1 0 0
FEZ2 WILD-TYPE 21 17 7 8 6
'FEZ2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S970.  Gene #140: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
FEZ2 MUTATED 0 1 1 0 1
FEZ2 WILD-TYPE 13 7 13 14 6
'FEZ2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S971.  Gene #140: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
FEZ2 MUTATED 0 1 0 2
FEZ2 WILD-TYPE 17 7 14 14
'FEZ2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S972.  Gene #140: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
FEZ2 MUTATED 1 0 0 2
FEZ2 WILD-TYPE 15 16 5 16
'FEZ2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S973.  Gene #140: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
FEZ2 MUTATED 0 1 2
FEZ2 WILD-TYPE 26 11 16
'FEZ2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S974.  Gene #140: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
FEZ2 MUTATED 0 1 1 1 0
FEZ2 WILD-TYPE 13 18 7 13 2
'FEZ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 1

Table S975.  Gene #140: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
FEZ2 MUTATED 0 1 2
FEZ2 WILD-TYPE 27 12 14
'FEZ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S976.  Gene #140: 'FEZ2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
FEZ2 MUTATED 0 1 0 1 0 1
FEZ2 WILD-TYPE 9 16 7 11 6 4
'GLI3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S977.  Gene #141: 'GLI3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
GLI3 MUTATED 3 1 0 1 0
GLI3 WILD-TYPE 18 18 8 7 6
'GLI3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S978.  Gene #141: 'GLI3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
GLI3 MUTATED 2 0 0 1 1
GLI3 WILD-TYPE 11 8 14 13 6
'GLI3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S979.  Gene #141: 'GLI3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
GLI3 MUTATED 2 0 1 1
GLI3 WILD-TYPE 15 8 13 15
'GLI3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S980.  Gene #141: 'GLI3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
GLI3 MUTATED 2 1 0 1
GLI3 WILD-TYPE 14 15 5 17
'GLI3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S981.  Gene #141: 'GLI3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
GLI3 MUTATED 4 0 0
GLI3 WILD-TYPE 22 12 18
'GLI3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S982.  Gene #141: 'GLI3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
GLI3 MUTATED 1 0 1 2 0
GLI3 WILD-TYPE 12 19 7 12 2
'GLI3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S983.  Gene #141: 'GLI3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
GLI3 MUTATED 4 0 0
GLI3 WILD-TYPE 23 13 16
'GLI3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0919 (Fisher's exact test), Q value = 1

Table S984.  Gene #141: 'GLI3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
GLI3 MUTATED 0 0 2 2 0 0
GLI3 WILD-TYPE 9 17 5 10 6 5
'NOL9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00202 (Fisher's exact test), Q value = 1

Table S985.  Gene #142: 'NOL9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 21 19 8 8 6
NOL9 MUTATED 0 0 0 3 1
NOL9 WILD-TYPE 21 19 8 5 5

Figure S71.  Get High-res Image Gene #142: 'NOL9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NOL9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S986.  Gene #142: 'NOL9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 8 14 14 7
NOL9 MUTATED 1 0 1 1 0
NOL9 WILD-TYPE 12 8 13 13 7
'NOL9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S987.  Gene #142: 'NOL9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 17 8 14 16
NOL9 MUTATED 1 0 1 1
NOL9 WILD-TYPE 16 8 13 15
'NOL9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S988.  Gene #142: 'NOL9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 16 16 5 18
NOL9 MUTATED 1 1 0 1
NOL9 WILD-TYPE 15 15 5 17
'NOL9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S989.  Gene #142: 'NOL9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 26 12 18
NOL9 MUTATED 1 1 1
NOL9 WILD-TYPE 25 11 17
'NOL9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S990.  Gene #142: 'NOL9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 13 19 8 14 2
NOL9 MUTATED 0 1 0 2 0
NOL9 WILD-TYPE 13 18 8 12 2
'NOL9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S991.  Gene #142: 'NOL9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 27 13 16
NOL9 MUTATED 1 1 1
NOL9 WILD-TYPE 26 12 15
'NOL9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S992.  Gene #142: 'NOL9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 9 17 7 12 6 5
NOL9 MUTATED 0 1 0 2 0 0
NOL9 WILD-TYPE 9 16 7 10 6 5
Methods & Data
Input
  • Mutation data file = transformed.cor.cli.txt

  • Molecular subtypes file = ACC-TP.transferedmergedcluster.txt

  • Number of patients = 64

  • Number of significantly mutated genes = 142

  • Number of Molecular subtypes = 8

  • Exclude genes that fewer than K tumors have mutations, K = 3

Fisher's exact test

For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R

Q value calculation

For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.

Download Results

In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.

References
[1] Fisher, R.A., On the interpretation of chi-square from contingency tables, and the calculation of P, Journal of the Royal Statistical Society 85(1):87-94 (1922)
[2] Benjamini and Hochberg, Controlling the false discovery rate: a practical and powerful approach to multiple testing, Journal of the Royal Statistical Society Series B 59:289-300 (1995)