Correlation between gene mutation status and molecular subtypes
Breast Invasive Carcinoma (Primary solid tumor)
15 July 2014  |  analyses__2014_07_15
Maintainer Information
Citation Information
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2014): Correlation between gene mutation status and molecular subtypes. Broad Institute of MIT and Harvard. doi:10.7908/C1ST7NJ5
Overview
Introduction

This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.

Summary

Testing the association between mutation status of 152 genes and 12 molecular subtypes across 976 patients, 49 significant findings detected with P value < 0.05 and Q value < 0.25.

  • PIK3CA mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TP53 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CDH1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • GATA3 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MAP3K1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • CBFB mutation correlated to 'MRNASEQ_CNMF'.

  • MAP2K4 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

Results
Overview of the results

Table 1.  Get Full Table Overview of the association between mutation status of 152 genes and 12 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 49 significant findings detected.

Clinical
Features
MRNA
CNMF
MRNA
CHIERARCHICAL
CN
CNMF
METHLYATION
CNMF
RPPA
CNMF
RPPA
CHIERARCHICAL
MRNASEQ
CNMF
MRNASEQ
CHIERARCHICAL
MIRSEQ
CNMF
MIRSEQ
CHIERARCHICAL
MIRSEQ
MATURE
CNMF
MIRSEQ
MATURE
CHIERARCHICAL
nMutated (%) nWild-Type Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test
PIK3CA 316 (32%) 660 1e-05
(0.0163)
1e-05
(0.0163)
1e-05
(0.0163)
1e-05
(0.0163)
0.00013
(0.207)
1e-05
(0.0163)
1e-05
(0.0163)
1e-05
(0.0163)
1e-05
(0.0163)
1e-05
(0.0163)
1e-05
(0.0163)
1e-05
(0.0163)
TP53 295 (30%) 681 1e-05
(0.0163)
1e-05
(0.0163)
1e-05
(0.0163)
1e-05
(0.0163)
1e-05
(0.0163)
1e-05
(0.0163)
1e-05
(0.0163)
1e-05
(0.0163)
1e-05
(0.0163)
1e-05
(0.0163)
1e-05
(0.0163)
1e-05
(0.0163)
GATA3 97 (10%) 879 1e-05
(0.0163)
1e-05
(0.0163)
0.00114
(1.00)
3e-05
(0.0478)
0.0158
(1.00)
0.00012
(0.191)
1e-05
(0.0163)
1e-05
(0.0163)
1e-05
(0.0163)
1e-05
(0.0163)
1e-05
(0.0163)
1e-05
(0.0163)
CDH1 106 (11%) 870 0.00035
(0.554)
0.00607
(1.00)
1e-05
(0.0163)
1e-05
(0.0163)
0.00852
(1.00)
0.0194
(1.00)
1e-05
(0.0163)
1e-05
(0.0163)
1e-05
(0.0163)
1e-05
(0.0163)
1e-05
(0.0163)
1e-05
(0.0163)
MAP3K1 70 (7%) 906 3e-05
(0.0478)
0.00015
(0.238)
0.00101
(1.00)
0.0507
(1.00)
0.00056
(0.884)
1e-05
(0.0163)
0.00021
(0.333)
6e-05
(0.0955)
0.00013
(0.207)
0.00021
(0.333)
0.00043
(0.68)
0.0208
(1.00)
CBFB 23 (2%) 953 0.0934
(1.00)
0.216
(1.00)
0.02
(1.00)
0.133
(1.00)
0.111
(1.00)
0.0811
(1.00)
3e-05
(0.0478)
0.00036
(0.57)
0.0133
(1.00)
0.00341
(1.00)
0.0052
(1.00)
0.00133
(1.00)
MAP2K4 32 (3%) 944 0.0576
(1.00)
0.00423
(1.00)
0.0419
(1.00)
0.047
(1.00)
0.00234
(1.00)
0.292
(1.00)
0.0058
(1.00)
0.00791
(1.00)
0.00046
(0.727)
0.00054
(0.853)
3e-05
(0.0478)
0.0016
(1.00)
RUNX1 29 (3%) 947 0.0159
(1.00)
0.0869
(1.00)
0.00508
(1.00)
0.168
(1.00)
1
(1.00)
0.299
(1.00)
0.0478
(1.00)
0.0299
(1.00)
0.0134
(1.00)
0.264
(1.00)
0.223
(1.00)
0.316
(1.00)
PTEN 35 (4%) 941 0.311
(1.00)
0.904
(1.00)
0.548
(1.00)
0.654
(1.00)
0.921
(1.00)
0.975
(1.00)
0.421
(1.00)
0.372
(1.00)
0.763
(1.00)
0.495
(1.00)
0.2
(1.00)
0.949
(1.00)
ARID1A 27 (3%) 949 0.303
(1.00)
0.94
(1.00)
0.0839
(1.00)
0.26
(1.00)
1
(1.00)
0.243
(1.00)
0.114
(1.00)
0.773
(1.00)
0.227
(1.00)
0.0708
(1.00)
0.151
(1.00)
0.381
(1.00)
MLL3 69 (7%) 907 0.669
(1.00)
0.154
(1.00)
0.387
(1.00)
0.356
(1.00)
0.638
(1.00)
0.527
(1.00)
0.0436
(1.00)
0.121
(1.00)
0.0624
(1.00)
0.364
(1.00)
0.177
(1.00)
0.219
(1.00)
FOXA1 23 (2%) 953 0.366
(1.00)
0.532
(1.00)
0.0538
(1.00)
0.0446
(1.00)
0.894
(1.00)
0.95
(1.00)
0.0731
(1.00)
0.177
(1.00)
0.134
(1.00)
0.695
(1.00)
0.0757
(1.00)
0.549
(1.00)
RBMX 14 (1%) 962 0.385
(1.00)
0.105
(1.00)
0.0973
(1.00)
0.141
(1.00)
0.556
(1.00)
0.585
(1.00)
0.0728
(1.00)
0.246
(1.00)
0.615
(1.00)
0.541
(1.00)
0.248
(1.00)
0.628
(1.00)
TBX3 27 (3%) 949 0.576
(1.00)
0.627
(1.00)
0.341
(1.00)
0.375
(1.00)
0.0828
(1.00)
0.975
(1.00)
0.143
(1.00)
0.388
(1.00)
0.0983
(1.00)
0.0855
(1.00)
0.387
(1.00)
0.0244
(1.00)
THEM5 11 (1%) 965 0.262
(1.00)
0.871
(1.00)
0.259
(1.00)
0.29
(1.00)
0.208
(1.00)
0.122
(1.00)
0.855
(1.00)
0.994
(1.00)
0.721
(1.00)
0.825
(1.00)
0.838
(1.00)
0.484
(1.00)
RB1 19 (2%) 957 0.88
(1.00)
0.303
(1.00)
0.0729
(1.00)
0.118
(1.00)
0.442
(1.00)
0.773
(1.00)
0.186
(1.00)
0.0279
(1.00)
0.0507
(1.00)
0.0312
(1.00)
0.00831
(1.00)
0.125
(1.00)
NF1 27 (3%) 949 0.574
(1.00)
0.804
(1.00)
0.481
(1.00)
0.152
(1.00)
0.937
(1.00)
0.261
(1.00)
0.0919
(1.00)
0.0989
(1.00)
0.847
(1.00)
0.87
(1.00)
0.479
(1.00)
0.758
(1.00)
ACTL6B 10 (1%) 966 0.35
(1.00)
0.287
(1.00)
0.0373
(1.00)
0.287
(1.00)
0.864
(1.00)
0.353
(1.00)
0.667
(1.00)
0.628
(1.00)
0.665
(1.00)
0.754
(1.00)
0.861
(1.00)
1
(1.00)
SPEN 32 (3%) 944 0.665
(1.00)
0.789
(1.00)
0.496
(1.00)
0.274
(1.00)
0.943
(1.00)
0.34
(1.00)
0.16
(1.00)
0.168
(1.00)
0.025
(1.00)
0.0291
(1.00)
0.362
(1.00)
0.0653
(1.00)
CDKN1B 10 (1%) 966 0.64
(1.00)
0.738
(1.00)
0.203
(1.00)
0.321
(1.00)
0.738
(1.00)
0.441
(1.00)
0.0825
(1.00)
0.174
(1.00)
0.0232
(1.00)
0.595
(1.00)
0.331
(1.00)
0.406
(1.00)
NCOR1 41 (4%) 935 0.74
(1.00)
0.967
(1.00)
0.969
(1.00)
0.646
(1.00)
0.436
(1.00)
0.524
(1.00)
0.656
(1.00)
0.161
(1.00)
0.862
(1.00)
0.301
(1.00)
1
(1.00)
0.179
(1.00)
SF3B1 16 (2%) 960 0.845
(1.00)
0.845
(1.00)
0.43
(1.00)
0.0462
(1.00)
0.451
(1.00)
0.164
(1.00)
0.53
(1.00)
0.709
(1.00)
0.0447
(1.00)
0.643
(1.00)
0.672
(1.00)
0.28
(1.00)
ZFP36L1 9 (1%) 967 0.403
(1.00)
0.898
(1.00)
0.00632
(1.00)
0.055
(1.00)
0.0264
(1.00)
0.231
(1.00)
0.454
(1.00)
0.156
(1.00)
0.532
(1.00)
0.655
(1.00)
1
(1.00)
0.859
(1.00)
KRAS 6 (1%) 970 0.54
(1.00)
0.632
(1.00)
0.353
(1.00)
0.258
(1.00)
0.2
(1.00)
0.712
(1.00)
0.315
(1.00)
0.37
(1.00)
0.667
(1.00)
0.642
(1.00)
0.743
(1.00)
0.103
(1.00)
TCP11 6 (1%) 970 0.783
(1.00)
0.512
(1.00)
0.481
(1.00)
0.863
(1.00)
0.919
(1.00)
0.771
(1.00)
0.773
(1.00)
0.887
(1.00)
0.73
(1.00)
AQP12A 6 (1%) 970 0.623
(1.00)
0.733
(1.00)
0.281
(1.00)
0.166
(1.00)
0.2
(1.00)
0.134
(1.00)
0.742
(1.00)
0.949
(1.00)
1
(1.00)
0.287
(1.00)
1
(1.00)
0.902
(1.00)
DLG1 13 (1%) 963 0.34
(1.00)
0.322
(1.00)
0.594
(1.00)
0.102
(1.00)
0.892
(1.00)
0.0959
(1.00)
0.0726
(1.00)
0.136
(1.00)
0.244
(1.00)
0.0194
(1.00)
0.744
(1.00)
0.431
(1.00)
MYB 12 (1%) 964 0.74
(1.00)
0.0284
(1.00)
0.266
(1.00)
0.619
(1.00)
1
(1.00)
0.685
(1.00)
0.901
(1.00)
0.11
(1.00)
0.579
(1.00)
0.784
(1.00)
0.0538
(1.00)
0.781
(1.00)
RPGR 19 (2%) 957 0.968
(1.00)
0.703
(1.00)
0.952
(1.00)
0.535
(1.00)
0.743
(1.00)
0.238
(1.00)
0.597
(1.00)
0.57
(1.00)
0.572
(1.00)
0.308
(1.00)
0.768
(1.00)
0.896
(1.00)
TBL1XR1 10 (1%) 966 0.158
(1.00)
0.0823
(1.00)
0.0501
(1.00)
0.926
(1.00)
0.448
(1.00)
0.134
(1.00)
0.0575
(1.00)
0.0342
(1.00)
0.237
(1.00)
0.393
(1.00)
0.64
(1.00)
0.204
(1.00)
KDM6A 16 (2%) 960 0.74
(1.00)
0.344
(1.00)
0.234
(1.00)
0.626
(1.00)
0.639
(1.00)
0.874
(1.00)
0.557
(1.00)
0.477
(1.00)
0.855
(1.00)
0.234
(1.00)
0.144
(1.00)
0.135
(1.00)
MYH9 18 (2%) 958 0.397
(1.00)
0.423
(1.00)
0.207
(1.00)
0.571
(1.00)
0.821
(1.00)
0.0208
(1.00)
0.445
(1.00)
0.605
(1.00)
0.757
(1.00)
0.91
(1.00)
0.64
(1.00)
0.275
(1.00)
HLA-C 9 (1%) 967 0.139
(1.00)
0.85
(1.00)
0.775
(1.00)
0.275
(1.00)
0.398
(1.00)
0.77
(1.00)
0.336
(1.00)
0.38
(1.00)
0.234
(1.00)
0.00634
(1.00)
0.141
(1.00)
0.112
(1.00)
RAB42 4 (0%) 972 0.405
(1.00)
0.0698
(1.00)
0.372
(1.00)
0.4
(1.00)
0.496
(1.00)
0.196
(1.00)
0.126
(1.00)
0.218
(1.00)
0.0108
(1.00)
FGFR2 11 (1%) 965 0.915
(1.00)
0.878
(1.00)
0.354
(1.00)
0.37
(1.00)
1
(1.00)
0.917
(1.00)
0.277
(1.00)
0.0731
(1.00)
0.545
(1.00)
0.6
(1.00)
0.245
(1.00)
0.66
(1.00)
ERBB2 21 (2%) 955 0.778
(1.00)
0.572
(1.00)
0.0408
(1.00)
0.0577
(1.00)
0.551
(1.00)
0.882
(1.00)
0.0879
(1.00)
0.148
(1.00)
0.00189
(1.00)
0.332
(1.00)
0.232
(1.00)
0.123
(1.00)
CTCF 17 (2%) 959 0.0588
(1.00)
0.0434
(1.00)
0.00385
(1.00)
0.0326
(1.00)
0.0631
(1.00)
0.126
(1.00)
0.0228
(1.00)
0.1
(1.00)
0.0355
(1.00)
0.0118
(1.00)
0.226
(1.00)
0.215
(1.00)
ZMYM3 14 (1%) 962 0.497
(1.00)
0.441
(1.00)
0.915
(1.00)
0.447
(1.00)
0.128
(1.00)
0.284
(1.00)
0.509
(1.00)
0.344
(1.00)
0.584
(1.00)
1
(1.00)
1
(1.00)
0.903
(1.00)
FRMPD2 12 (1%) 964 0.821
(1.00)
1
(1.00)
0.6
(1.00)
0.0963
(1.00)
0.467
(1.00)
0.883
(1.00)
0.538
(1.00)
0.0378
(1.00)
0.936
(1.00)
0.746
(1.00)
0.395
(1.00)
0.257
(1.00)
TFE3 7 (1%) 969 0.677
(1.00)
0.902
(1.00)
0.673
(1.00)
0.643
(1.00)
1
(1.00)
0.548
(1.00)
0.626
(1.00)
0.404
(1.00)
0.5
(1.00)
0.0238
(1.00)
0.512
(1.00)
0.649
(1.00)
GPS2 11 (1%) 965 0.0137
(1.00)
0.0478
(1.00)
0.0603
(1.00)
0.342
(1.00)
0.265
(1.00)
0.746
(1.00)
0.159
(1.00)
0.0952
(1.00)
0.405
(1.00)
0.633
(1.00)
1
(1.00)
0.207
(1.00)
DOCK11 20 (2%) 956 0.667
(1.00)
0.448
(1.00)
0.276
(1.00)
0.426
(1.00)
0.363
(1.00)
0.0652
(1.00)
0.26
(1.00)
0.0176
(1.00)
0.504
(1.00)
0.016
(1.00)
0.0407
(1.00)
0.167
(1.00)
HRNR 31 (3%) 945 0.988
(1.00)
0.782
(1.00)
0.143
(1.00)
0.747
(1.00)
0.592
(1.00)
0.72
(1.00)
0.987
(1.00)
0.702
(1.00)
0.484
(1.00)
0.217
(1.00)
0.908
(1.00)
0.52
(1.00)
CASZ1 14 (1%) 962 0.937
(1.00)
0.855
(1.00)
0.971
(1.00)
0.529
(1.00)
0.111
(1.00)
0.938
(1.00)
0.98
(1.00)
0.699
(1.00)
0.941
(1.00)
0.863
(1.00)
0.92
(1.00)
0.958
(1.00)
CDC42EP1 5 (1%) 971 0.52
(1.00)
0.463
(1.00)
0.513
(1.00)
0.259
(1.00)
1
(1.00)
0.584
(1.00)
0.254
(1.00)
0.555
(1.00)
0.612
(1.00)
0.0843
(1.00)
C1QTNF5 7 (1%) 969 0.647
(1.00)
0.199
(1.00)
0.508
(1.00)
0.645
(1.00)
0.711
(1.00)
0.529
(1.00)
0.285
(1.00)
0.303
(1.00)
0.00993
(1.00)
0.261
(1.00)
0.124
(1.00)
TGS1 13 (1%) 963 0.634
(1.00)
0.666
(1.00)
0.443
(1.00)
0.248
(1.00)
0.114
(1.00)
0.709
(1.00)
0.756
(1.00)
0.0796
(1.00)
0.193
(1.00)
0.155
(1.00)
0.802
(1.00)
0.0866
(1.00)
USP36 8 (1%) 968 0.837
(1.00)
0.183
(1.00)
1
(1.00)
1
(1.00)
0.714
(1.00)
0.315
(1.00)
0.554
(1.00)
0.128
(1.00)
0.904
(1.00)
0.363
(1.00)
1
(1.00)
0.902
(1.00)
ASB10 8 (1%) 968 0.944
(1.00)
0.0647
(1.00)
1
(1.00)
0.5
(1.00)
0.763
(1.00)
0.828
(1.00)
0.106
(1.00)
0.222
(1.00)
0.862
(1.00)
0.643
(1.00)
EIF4A2 9 (1%) 967 0.234
(1.00)
1
(1.00)
0.884
(1.00)
0.229
(1.00)
1
(1.00)
0.188
(1.00)
0.0391
(1.00)
0.0699
(1.00)
0.763
(1.00)
0.212
(1.00)
0.592
(1.00)
0.184
(1.00)
DNAH12 18 (2%) 958 1
(1.00)
0.734
(1.00)
0.627
(1.00)
0.41
(1.00)
0.453
(1.00)
0.879
(1.00)
0.156
(1.00)
0.926
(1.00)
0.715
(1.00)
0.697
(1.00)
0.287
(1.00)
0.253
(1.00)
RHBG 4 (0%) 972 0.829
(1.00)
0.188
(1.00)
0.17
(1.00)
0.492
(1.00)
0.281
(1.00)
0.291
(1.00)
0.505
(1.00)
PAX2 4 (0%) 972 0.945
(1.00)
0.335
(1.00)
0.371
(1.00)
0.296
(1.00)
0.379
(1.00)
0.318
(1.00)
0.254
(1.00)
0.0978
(1.00)
0.943
(1.00)
FXYD5 5 (1%) 971 0.564
(1.00)
0.787
(1.00)
0.567
(1.00)
0.642
(1.00)
1
(1.00)
0.178
(1.00)
0.484
(1.00)
0.337
(1.00)
0.398
(1.00)
BCORL1 15 (2%) 961 0.149
(1.00)
0.833
(1.00)
0.542
(1.00)
0.172
(1.00)
0.29
(1.00)
0.00796
(1.00)
0.447
(1.00)
0.331
(1.00)
0.303
(1.00)
0.872
(1.00)
0.381
(1.00)
0.641
(1.00)
ZNF362 5 (1%) 971 0.881
(1.00)
0.871
(1.00)
0.103
(1.00)
0.153
(1.00)
0.744
(1.00)
0.409
(1.00)
0.0502
(1.00)
0.237
(1.00)
0.0464
(1.00)
PTHLH 7 (1%) 969 0.229
(1.00)
0.897
(1.00)
0.0132
(1.00)
0.181
(1.00)
0.69
(1.00)
0.678
(1.00)
0.0489
(1.00)
0.646
(1.00)
0.16
(1.00)
0.595
(1.00)
GPRIN2 11 (1%) 965 0.602
(1.00)
0.627
(1.00)
0.887
(1.00)
0.64
(1.00)
0.877
(1.00)
0.0416
(1.00)
0.789
(1.00)
0.233
(1.00)
0.783
(1.00)
0.0682
(1.00)
0.588
(1.00)
0.22
(1.00)
ANKRD12 18 (2%) 958 0.277
(1.00)
0.132
(1.00)
0.563
(1.00)
0.875
(1.00)
0.385
(1.00)
0.121
(1.00)
0.19
(1.00)
0.0329
(1.00)
0.655
(1.00)
0.934
(1.00)
1
(1.00)
0.538
(1.00)
ZNF687 11 (1%) 965 0.342
(1.00)
0.129
(1.00)
0.347
(1.00)
0.132
(1.00)
0.13
(1.00)
0.0863
(1.00)
0.0397
(1.00)
0.131
(1.00)
0.224
(1.00)
0.0335
(1.00)
0.525
(1.00)
0.523
(1.00)
KCNN3 9 (1%) 967 0.145
(1.00)
0.509
(1.00)
0.216
(1.00)
0.0979
(1.00)
0.325
(1.00)
0.829
(1.00)
0.0756
(1.00)
0.156
(1.00)
0.259
(1.00)
0.579
(1.00)
0.279
(1.00)
0.527
(1.00)
ICOSLG 5 (1%) 971 0.769
(1.00)
0.131
(1.00)
0.0072
(1.00)
0.517
(1.00)
0.822
(1.00)
0.767
(1.00)
0.287
(1.00)
0.825
(1.00)
PIK3R1 15 (2%) 961 0.147
(1.00)
0.185
(1.00)
0.646
(1.00)
0.239
(1.00)
0.632
(1.00)
0.0117
(1.00)
0.13
(1.00)
0.071
(1.00)
0.0204
(1.00)
0.347
(1.00)
0.138
(1.00)
0.725
(1.00)
MR1 7 (1%) 969 0.213
(1.00)
0.703
(1.00)
0.894
(1.00)
0.346
(1.00)
1
(1.00)
1
(1.00)
0.432
(1.00)
0.641
(1.00)
0.645
(1.00)
0.221
(1.00)
0.288
(1.00)
0.796
(1.00)
CABYR 6 (1%) 970 0.904
(1.00)
0.34
(1.00)
0.0131
(1.00)
0.00028
(0.444)
0.525
(1.00)
0.227
(1.00)
0.0368
(1.00)
0.0992
(1.00)
AKT2 5 (1%) 971 0.141
(1.00)
1
(1.00)
0.623
(1.00)
0.243
(1.00)
0.118
(1.00)
0.216
(1.00)
0.0661
(1.00)
0.691
(1.00)
0.291
(1.00)
0.842
(1.00)
ZBTB7C 5 (1%) 971 0.46
(1.00)
0.8
(1.00)
0.88
(1.00)
0.49
(1.00)
0.741
(1.00)
0.397
(1.00)
0.779
(1.00)
0.945
(1.00)
RIBC1 4 (0%) 972 0.591
(1.00)
0.379
(1.00)
0.461
(1.00)
0.0537
(1.00)
0.706
(1.00)
1
(1.00)
0.395
(1.00)
0.845
(1.00)
CEP57 6 (1%) 970 0.374
(1.00)
0.276
(1.00)
0.104
(1.00)
0.198
(1.00)
0.143
(1.00)
0.751
(1.00)
0.0675
(1.00)
0.517
(1.00)
0.0604
(1.00)
0.174
(1.00)
TARBP2 6 (1%) 970 0.662
(1.00)
0.959
(1.00)
0.107
(1.00)
0.649
(1.00)
0.167
(1.00)
0.273
(1.00)
0.508
(1.00)
0.438
(1.00)
0.134
(1.00)
0.32
(1.00)
0.196
(1.00)
0.0108
(1.00)
OXCT2 4 (0%) 972 0.447
(1.00)
0.543
(1.00)
0.829
(1.00)
0.933
(1.00)
0.373
(1.00)
1
(1.00)
0.297
(1.00)
ANKRD20A4 7 (1%) 969 0.192
(1.00)
0.0963
(1.00)
0.802
(1.00)
0.877
(1.00)
0.779
(1.00)
0.656
(1.00)
0.0838
(1.00)
0.0794
(1.00)
1
(1.00)
0.61
(1.00)
0.636
(1.00)
0.513
(1.00)
HIST1H3B 11 (1%) 965 0.552
(1.00)
0.958
(1.00)
0.661
(1.00)
0.663
(1.00)
0.632
(1.00)
0.659
(1.00)
0.254
(1.00)
0.429
(1.00)
0.807
(1.00)
0.549
(1.00)
0.88
(1.00)
0.954
(1.00)
MED23 14 (1%) 962 0.0975
(1.00)
0.284
(1.00)
0.183
(1.00)
0.0421
(1.00)
0.155
(1.00)
0.677
(1.00)
0.138
(1.00)
0.00209
(1.00)
0.0429
(1.00)
0.201
(1.00)
0.12
(1.00)
0.547
(1.00)
MUC6 14 (1%) 962 0.0203
(1.00)
0.608
(1.00)
0.5
(1.00)
0.168
(1.00)
0.366
(1.00)
0.984
(1.00)
0.0597
(1.00)
0.253
(1.00)
0.167
(1.00)
0.0456
(1.00)
0.191
(1.00)
0.249
(1.00)
PSIP1 8 (1%) 968 0.69
(1.00)
0.717
(1.00)
0.475
(1.00)
0.875
(1.00)
0.691
(1.00)
1
(1.00)
0.544
(1.00)
0.828
(1.00)
0.191
(1.00)
0.91
(1.00)
1
(1.00)
0.296
(1.00)
PCNXL2 21 (2%) 955 0.954
(1.00)
0.937
(1.00)
0.623
(1.00)
0.909
(1.00)
0.483
(1.00)
0.323
(1.00)
0.936
(1.00)
0.338
(1.00)
0.644
(1.00)
0.771
(1.00)
0.666
(1.00)
0.516
(1.00)
SLC35B2 7 (1%) 969 1
(1.00)
0.245
(1.00)
0.96
(1.00)
0.558
(1.00)
0.557
(1.00)
0.965
(1.00)
0.829
(1.00)
0.718
(1.00)
0.664
(1.00)
0.862
(1.00)
0.759
(1.00)
ANGPT4 10 (1%) 966 0.202
(1.00)
1
(1.00)
0.26
(1.00)
0.135
(1.00)
0.517
(1.00)
0.548
(1.00)
0.00774
(1.00)
0.0742
(1.00)
0.191
(1.00)
0.378
(1.00)
0.719
(1.00)
0.387
(1.00)
MKL1 5 (1%) 971 0.901
(1.00)
0.685
(1.00)
0.347
(1.00)
0.779
(1.00)
0.0991
(1.00)
0.652
(1.00)
0.0645
(1.00)
0.526
(1.00)
0.856
(1.00)
NBPF9 5 (1%) 971 0.618
(1.00)
0.622
(1.00)
0.809
(1.00)
0.864
(1.00)
1
(1.00)
0.674
(1.00)
0.198
(1.00)
0.526
(1.00)
0.341
(1.00)
PRICKLE3 11 (1%) 965 0.261
(1.00)
0.0269
(1.00)
1
(1.00)
0.0472
(1.00)
0.511
(1.00)
0.588
(1.00)
0.3
(1.00)
0.34
(1.00)
0.803
(1.00)
0.553
(1.00)
0.521
(1.00)
0.119
(1.00)
CCDC82 6 (1%) 970 0.46
(1.00)
0.0582
(1.00)
0.713
(1.00)
0.0383
(1.00)
0.273
(1.00)
0.335
(1.00)
0.00539
(1.00)
0.341
(1.00)
0.345
(1.00)
0.107
(1.00)
0.962
(1.00)
CXCR3 6 (1%) 970 0.604
(1.00)
0.791
(1.00)
0.181
(1.00)
0.801
(1.00)
1
(1.00)
1
(1.00)
0.765
(1.00)
0.618
(1.00)
0.774
(1.00)
0.582
(1.00)
0.833
(1.00)
0.213
(1.00)
TPP2 8 (1%) 968 0.0876
(1.00)
0.946
(1.00)
0.912
(1.00)
0.675
(1.00)
0.626
(1.00)
0.392
(1.00)
0.608
(1.00)
0.758
(1.00)
0.521
(1.00)
0.941
(1.00)
C15ORF39 9 (1%) 967 0.604
(1.00)
0.51
(1.00)
0.00585
(1.00)
0.0156
(1.00)
0.64
(1.00)
0.498
(1.00)
0.0279
(1.00)
0.00111
(1.00)
0.0149
(1.00)
0.0178
(1.00)
0.00203
(1.00)
0.00097
(1.00)
SDC1 3 (0%) 973 0.867
(1.00)
0.338
(1.00)
0.00824
(1.00)
0.628
(1.00)
0.91
(1.00)
CASP8 12 (1%) 964 0.467
(1.00)
0.393
(1.00)
0.123
(1.00)
0.342
(1.00)
0.529
(1.00)
0.685
(1.00)
0.177
(1.00)
0.494
(1.00)
0.54
(1.00)
0.457
(1.00)
0.743
(1.00)
0.461
(1.00)
TNRC6B 18 (2%) 958 0.522
(1.00)
0.155
(1.00)
0.286
(1.00)
0.945
(1.00)
0.508
(1.00)
0.417
(1.00)
0.54
(1.00)
0.441
(1.00)
0.792
(1.00)
0.775
(1.00)
1
(1.00)
0.822
(1.00)
IRS4 11 (1%) 965 0.144
(1.00)
0.781
(1.00)
0.279
(1.00)
0.642
(1.00)
0.382
(1.00)
0.957
(1.00)
0.118
(1.00)
0.364
(1.00)
0.781
(1.00)
0.648
(1.00)
1
(1.00)
0.902
(1.00)
RHOA 6 (1%) 970 0.905
(1.00)
0.588
(1.00)
0.857
(1.00)
0.394
(1.00)
0.111
(1.00)
0.282
(1.00)
0.872
(1.00)
0.124
(1.00)
0.777
(1.00)
0.581
(1.00)
0.385
(1.00)
0.403
(1.00)
TTPAL 4 (0%) 972 0.238
(1.00)
0.305
(1.00)
0.179
(1.00)
0.645
(1.00)
0.46
(1.00)
0.386
(1.00)
0.326
(1.00)
0.215
(1.00)
0.28
(1.00)
MLL4 13 (1%) 963 0.401
(1.00)
0.511
(1.00)
0.85
(1.00)
0.59
(1.00)
0.131
(1.00)
0.392
(1.00)
0.303
(1.00)
0.222
(1.00)
0.18
(1.00)
0.102
(1.00)
0.126
(1.00)
0.223
(1.00)
ATHL1 10 (1%) 966 0.871
(1.00)
0.321
(1.00)
0.0502
(1.00)
0.334
(1.00)
1
(1.00)
0.708
(1.00)
1
(1.00)
0.0287
(1.00)
0.0853
(1.00)
0.171
(1.00)
0.124
(1.00)
0.197
(1.00)
TMEM120B 5 (1%) 971 0.257
(1.00)
0.251
(1.00)
0.933
(1.00)
1
(1.00)
0.0488
(1.00)
0.954
(1.00)
0.74
(1.00)
0.381
(1.00)
0.204
(1.00)
0.59
(1.00)
LILRA6 6 (1%) 970 0.658
(1.00)
0.222
(1.00)
0.748
(1.00)
0.207
(1.00)
0.61
(1.00)
0.983
(1.00)
0.964
(1.00)
1
(1.00)
0.478
(1.00)
1
(1.00)
0.712
(1.00)
MLH1 6 (1%) 970 0.797
(1.00)
0.731
(1.00)
1
(1.00)
0.868
(1.00)
0.716
(1.00)
0.416
(1.00)
0.184
(1.00)
0.802
(1.00)
1
(1.00)
0.963
(1.00)
NUP93 4 (0%) 972 0.0184
(1.00)
0.381
(1.00)
0.0273
(1.00)
0.594
(1.00)
0.79
(1.00)
0.761
(1.00)
ALDH1L1 9 (1%) 967 0.646
(1.00)
0.92
(1.00)
0.338
(1.00)
0.529
(1.00)
0.692
(1.00)
0.51
(1.00)
0.466
(1.00)
0.404
(1.00)
1
(1.00)
0.366
(1.00)
0.391
(1.00)
0.603
(1.00)
LRIG2 7 (1%) 969 0.564
(1.00)
0.0322
(1.00)
0.216
(1.00)
0.613
(1.00)
0.207
(1.00)
0.276
(1.00)
0.317
(1.00)
0.284
(1.00)
0.721
(1.00)
0.974
(1.00)
0.512
(1.00)
0.38
(1.00)
CCDC78 5 (1%) 971 0.437
(1.00)
0.667
(1.00)
0.654
(1.00)
0.173
(1.00)
1
(1.00)
0.923
(1.00)
0.74
(1.00)
0.743
(1.00)
GAL3ST1 5 (1%) 971 0.76
(1.00)
0.647
(1.00)
0.47
(1.00)
0.916
(1.00)
0.34
(1.00)
0.961
(1.00)
0.385
(1.00)
0.709
(1.00)
FAM20C 4 (0%) 972 0.603
(1.00)
0.853
(1.00)
0.24
(1.00)
0.818
(1.00)
0.643
(1.00)
0.292
(1.00)
0.357
(1.00)
RCC1 3 (0%) 973 0.717
(1.00)
0.111
(1.00)
0.197
(1.00)
0.441
(1.00)
0.417
(1.00)
1
(1.00)
0.402
(1.00)
SPTAN1 11 (1%) 965 0.787
(1.00)
0.644
(1.00)
0.624
(1.00)
0.784
(1.00)
0.113
(1.00)
0.0494
(1.00)
0.115
(1.00)
0.122
(1.00)
0.0927
(1.00)
0.445
(1.00)
0.13
(1.00)
0.265
(1.00)
CHD4 19 (2%) 957 0.231
(1.00)
0.356
(1.00)
0.458
(1.00)
0.0819
(1.00)
0.195
(1.00)
0.621
(1.00)
0.0322
(1.00)
0.157
(1.00)
0.167
(1.00)
0.0908
(1.00)
0.47
(1.00)
0.106
(1.00)
ZFP36L2 7 (1%) 969 0.396
(1.00)
1
(1.00)
0.0444
(1.00)
0.543
(1.00)
1
(1.00)
1
(1.00)
0.895
(1.00)
0.385
(1.00)
0.804
(1.00)
0.973
(1.00)
1
(1.00)
1
(1.00)
STAG2 13 (1%) 963 0.285
(1.00)
0.211
(1.00)
0.216
(1.00)
0.199
(1.00)
0.878
(1.00)
0.202
(1.00)
0.193
(1.00)
0.137
(1.00)
0.22
(1.00)
0.929
(1.00)
0.51
(1.00)
0.845
(1.00)
HIST1H2BC 6 (1%) 970 0.374
(1.00)
0.0461
(1.00)
0.786
(1.00)
0.349
(1.00)
0.392
(1.00)
0.244
(1.00)
0.322
(1.00)
0.553
(1.00)
0.886
(1.00)
0.514
(1.00)
1
(1.00)
0.443
(1.00)
BPHL 5 (1%) 971 0.471
(1.00)
0.468
(1.00)
0.686
(1.00)
0.691
(1.00)
0.464
(1.00)
0.117
(1.00)
0.172
(1.00)
0.285
(1.00)
0.855
(1.00)
0.509
(1.00)
0.381
(1.00)
ATP2A1 11 (1%) 965 1
(1.00)
0.683
(1.00)
0.837
(1.00)
0.735
(1.00)
0.714
(1.00)
0.332
(1.00)
1
(1.00)
0.901
(1.00)
0.548
(1.00)
0.949
(1.00)
LRRC37A3 10 (1%) 966 0.0364
(1.00)
0.553
(1.00)
0.938
(1.00)
0.885
(1.00)
0.399
(1.00)
0.771
(1.00)
0.176
(1.00)
0.452
(1.00)
0.559
(1.00)
0.606
(1.00)
0.392
(1.00)
0.0676
(1.00)
EPDR1 5 (1%) 971 0.314
(1.00)
0.823
(1.00)
0.686
(1.00)
0.555
(1.00)
0.133
(1.00)
0.207
(1.00)
0.626
(1.00)
0.82
(1.00)
0.718
(1.00)
0.383
(1.00)
0.0971
(1.00)
EXOC4 8 (1%) 968 0.0106
(1.00)
0.658
(1.00)
0.347
(1.00)
0.0754
(1.00)
0.0116
(1.00)
0.0146
(1.00)
0.492
(1.00)
0.589
(1.00)
0.395
(1.00)
0.152
(1.00)
C11ORF49 5 (1%) 971 0.166
(1.00)
0.382
(1.00)
0.116
(1.00)
0.027
(1.00)
0.0507
(1.00)
0.0928
(1.00)
0.0065
(1.00)
0.218
(1.00)
ACTG1 8 (1%) 968 0.286
(1.00)
0.39
(1.00)
0.958
(1.00)
0.0416
(1.00)
0.588
(1.00)
0.5
(1.00)
0.819
(1.00)
0.0818
(1.00)
1
(1.00)
0.114
(1.00)
ANXA11 3 (0%) 973 0.671
(1.00)
0.499
(1.00)
0.463
(1.00)
0.0617
(1.00)
0.898
(1.00)
0.303
(1.00)
0.953
(1.00)
0.632
(1.00)
0.757
(1.00)
PFKP 7 (1%) 969 0.407
(1.00)
0.013
(1.00)
0.229
(1.00)
0.698
(1.00)
0.282
(1.00)
0.227
(1.00)
0.473
(1.00)
0.365
(1.00)
0.376
(1.00)
0.0979
(1.00)
0.289
(1.00)
0.506
(1.00)
GYLTL1B 4 (0%) 972 0.419
(1.00)
0.72
(1.00)
1
(1.00)
0.688
(1.00)
0.532
(1.00)
0.687
(1.00)
0.47
(1.00)
0.82
(1.00)
0.473
(1.00)
ANGPTL6 3 (0%) 973 0.865
(1.00)
0.545
(1.00)
0.907
(1.00)
SP3 7 (1%) 969 0.88
(1.00)
0.552
(1.00)
0.553
(1.00)
0.91
(1.00)
0.198
(1.00)
0.459
(1.00)
0.246
(1.00)
0.594
(1.00)
0.26
(1.00)
0.831
(1.00)
RUFY1 6 (1%) 970 0.386
(1.00)
0.731
(1.00)
0.343
(1.00)
0.162
(1.00)
0.847
(1.00)
0.00535
(1.00)
0.667
(1.00)
0.345
(1.00)
0.319
(1.00)
0.64
(1.00)
LIFR 9 (1%) 967 0.325
(1.00)
0.481
(1.00)
0.211
(1.00)
0.279
(1.00)
0.00796
(1.00)
0.072
(1.00)
0.476
(1.00)
0.08
(1.00)
0.439
(1.00)
1
(1.00)
1
(1.00)
0.815
(1.00)
OR6C76 7 (1%) 969 0.291
(1.00)
0.342
(1.00)
0.422
(1.00)
0.735
(1.00)
0.519
(1.00)
0.711
(1.00)
0.503
(1.00)
0.873
(1.00)
0.499
(1.00)
0.239
(1.00)
0.532
(1.00)
0.489
(1.00)
HCFC2 10 (1%) 966 0.0304
(1.00)
0.551
(1.00)
0.158
(1.00)
0.843
(1.00)
0.0278
(1.00)
0.7
(1.00)
0.923
(1.00)
1
(1.00)
1
(1.00)
1
(1.00)
ACOT2 5 (1%) 971 0.185
(1.00)
0.343
(1.00)
0.414
(1.00)
0.108
(1.00)
0.736
(1.00)
0.933
(1.00)
0.338
(1.00)
0.923
(1.00)
KIAA0430 15 (2%) 961 0.672
(1.00)
0.747
(1.00)
0.143
(1.00)
0.151
(1.00)
0.327
(1.00)
0.275
(1.00)
0.581
(1.00)
0.586
(1.00)
1
(1.00)
0.808
(1.00)
0.741
(1.00)
0.231
(1.00)
GTF2IRD2 8 (1%) 968 0.573
(1.00)
0.96
(1.00)
0.0191
(1.00)
0.519
(1.00)
0.384
(1.00)
0.957
(1.00)
0.65
(1.00)
0.707
(1.00)
0.503
(1.00)
0.559
(1.00)
0.687
(1.00)
0.021
(1.00)
NPAS4 9 (1%) 967 0.673
(1.00)
0.146
(1.00)
0.166
(1.00)
0.537
(1.00)
0.835
(1.00)
0.883
(1.00)
0.232
(1.00)
0.0575
(1.00)
0.147
(1.00)
0.134
(1.00)
0.389
(1.00)
0.598
(1.00)
JAK1 11 (1%) 965 0.498
(1.00)
0.476
(1.00)
0.286
(1.00)
0.462
(1.00)
1
(1.00)
0.731
(1.00)
0.271
(1.00)
0.318
(1.00)
0.0517
(1.00)
0.5
(1.00)
0.231
(1.00)
0.579
(1.00)
FGFR3 4 (0%) 972 0.0743
(1.00)
0.922
(1.00)
0.897
(1.00)
0.435
(1.00)
0.638
(1.00)
0.217
(1.00)
0.246
(1.00)
FBXW7 15 (2%) 961 0.812
(1.00)
0.535
(1.00)
0.168
(1.00)
0.00416
(1.00)
0.779
(1.00)
0.548
(1.00)
0.129
(1.00)
0.0699
(1.00)
0.304
(1.00)
0.09
(1.00)
0.342
(1.00)
0.121
(1.00)
OR2T8 6 (1%) 970 0.782
(1.00)
0.691
(1.00)
0.766
(1.00)
0.619
(1.00)
0.03
(1.00)
0.157
(1.00)
0.164
(1.00)
0.631
(1.00)
SHANK2 15 (2%) 961 0.105
(1.00)
0.196
(1.00)
0.833
(1.00)
0.129
(1.00)
0.0686
(1.00)
0.124
(1.00)
0.234
(1.00)
0.227
(1.00)
0.54
(1.00)
0.634
(1.00)
0.4
(1.00)
0.711
(1.00)
TRMT2A 7 (1%) 969 0.954
(1.00)
0.922
(1.00)
0.722
(1.00)
0.54
(1.00)
0.393
(1.00)
0.616
(1.00)
0.779
(1.00)
0.444
(1.00)
0.889
(1.00)
0.782
(1.00)
0.392
(1.00)
0.642
(1.00)
SHISA4 5 (1%) 971 0.0874
(1.00)
0.732
(1.00)
0.0503
(1.00)
0.115
(1.00)
0.129
(1.00)
0.358
(1.00)
0.461
(1.00)
0.857
(1.00)
CCNL2 7 (1%) 969 0.863
(1.00)
0.856
(1.00)
1
(1.00)
0.348
(1.00)
0.15
(1.00)
0.725
(1.00)
0.426
(1.00)
0.63
(1.00)
1
(1.00)
0.901
(1.00)
SEC14L5 7 (1%) 969 0.214
(1.00)
0.00238
(1.00)
0.125
(1.00)
0.648
(1.00)
0.392
(1.00)
0.103
(1.00)
0.405
(1.00)
0.0361
(1.00)
0.0582
(1.00)
0.0427
(1.00)
0.0235
(1.00)
0.59
(1.00)
SARM1 6 (1%) 970 0.559
(1.00)
0.116
(1.00)
0.681
(1.00)
0.644
(1.00)
0.0365
(1.00)
0.286
(1.00)
0.0322
(1.00)
0.0848
(1.00)
0.328
(1.00)
0.105
(1.00)
0.217
(1.00)
CLEC18B 6 (1%) 970 0.567
(1.00)
1
(1.00)
0.65
(1.00)
0.679
(1.00)
0.4
(1.00)
0.546
(1.00)
0.659
(1.00)
0.887
(1.00)
0.776
(1.00)
0.783
(1.00)
0.51
(1.00)
0.617
(1.00)
GIPC3 4 (0%) 972 0.832
(1.00)
0.497
(1.00)
0.461
(1.00)
1
(1.00)
0.17
(1.00)
0.636
(1.00)
0.709
(1.00)
0.579
(1.00)
0.846
(1.00)
HPS3 9 (1%) 967 0.12
(1.00)
0.511
(1.00)
0.199
(1.00)
0.207
(1.00)
0.112
(1.00)
0.0497
(1.00)
0.135
(1.00)
0.005
(1.00)
0.0467
(1.00)
0.0425
(1.00)
0.143
(1.00)
0.0598
(1.00)
OR2T35 4 (0%) 972 1
(1.00)
0.0943
(1.00)
0.828
(1.00)
0.904
(1.00)
0.872
(1.00)
0.58
(1.00)
0.54
(1.00)
PPIL2 6 (1%) 970 0.498
(1.00)
0.678
(1.00)
0.427
(1.00)
0.674
(1.00)
1
(1.00)
0.922
(1.00)
0.0596
(1.00)
0.711
(1.00)
ZNF397 7 (1%) 969 0.072
(1.00)
0.849
(1.00)
0.461
(1.00)
0.594
(1.00)
0.809
(1.00)
0.393
(1.00)
0.573
(1.00)
0.321
(1.00)
0.56
(1.00)
0.523
(1.00)
MLL 17 (2%) 959 0.653
(1.00)
0.647
(1.00)
0.287
(1.00)
0.233
(1.00)
0.777
(1.00)
0.248
(1.00)
0.531
(1.00)
0.241
(1.00)
0.66
(1.00)
0.243
(1.00)
0.301
(1.00)
0.301
(1.00)
ACVR1B 7 (1%) 969 0.89
(1.00)
1
(1.00)
0.904
(1.00)
0.87
(1.00)
0.559
(1.00)
0.097
(1.00)
0.729
(1.00)
0.369
(1.00)
0.271
(1.00)
0.589
(1.00)
0.291
(1.00)
0.589
(1.00)
GPR158 3 (0%) 973 1
(1.00)
0.444
(1.00)
0.216
(1.00)
0.114
(1.00)
0.0762
(1.00)
ARHGEF15 9 (1%) 967 0.462
(1.00)
0.2
(1.00)
0.73
(1.00)
0.541
(1.00)
0.893
(1.00)
0.744
(1.00)
0.658
(1.00)
0.284
(1.00)
0.245
(1.00)
0.776
(1.00)
0.288
(1.00)
0.798
(1.00)
TXNDC2 4 (0%) 972 0.504
(1.00)
0.616
(1.00)
0.522
(1.00)
0.247
(1.00)
0.218
(1.00)
0.508
(1.00)
0.105
(1.00)
0.556
(1.00)
COL9A2 3 (0%) 973 0.359
(1.00)
0.215
(1.00)
0.418
(1.00)
0.203
(1.00)
PARP4 12 (1%) 964 0.735
(1.00)
0.82
(1.00)
0.454
(1.00)
0.149
(1.00)
0.19
(1.00)
0.0595
(1.00)
0.0487
(1.00)
0.47
(1.00)
0.181
(1.00)
0.494
(1.00)
'PIK3CA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S1.  Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
PIK3CA MUTATED 7 13 23 8 61 23 8 21
PIK3CA WILD-TYPE 14 25 91 89 47 50 11 18

Figure S1.  Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PIK3CA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S2.  Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
PIK3CA MUTATED 19 70 39 5 31
PIK3CA WILD-TYPE 77 82 77 84 25

Figure S2.  Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PIK3CA MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S3.  Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
PIK3CA MUTATED 147 52 53 51 11
PIK3CA WILD-TYPE 220 174 38 190 26

Figure S3.  Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PIK3CA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S4.  Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
PIK3CA MUTATED 7 81 53 31 36
PIK3CA WILD-TYPE 109 100 104 52 75

Figure S4.  Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PIK3CA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.21

Table S5.  Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
PIK3CA MUTATED 27 49 46
PIK3CA WILD-TYPE 119 80 72

Figure S5.  Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'PIK3CA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S6.  Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
PIK3CA MUTATED 30 51 12 23 6
PIK3CA WILD-TYPE 29 58 78 81 25

Figure S6.  Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'PIK3CA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S7.  Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
PIK3CA MUTATED 8 62 120 59 39 19 9
PIK3CA WILD-TYPE 171 73 95 97 186 29 6

Figure S7.  Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PIK3CA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S8.  Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
PIK3CA MUTATED 7 102 92 69 31 15
PIK3CA WILD-TYPE 161 120 96 103 140 37

Figure S8.  Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S9.  Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
PIK3CA MUTATED 119 153 42
PIK3CA WILD-TYPE 151 260 232

Figure S9.  Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S10.  Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
PIK3CA MUTATED 70 57 153 7 27
PIK3CA WILD-TYPE 82 117 237 118 89

Figure S10.  Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S11.  Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
PIK3CA MUTATED 94 88 29
PIK3CA WILD-TYPE 154 129 158

Figure S11.  Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S12.  Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
PIK3CA MUTATED 5 28 76 31 55 16
PIK3CA WILD-TYPE 110 35 113 86 53 44

Figure S12.  Get High-res Image Gene #1: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S13.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
TP53 MUTATED 7 6 18 73 6 41 7 6
TP53 WILD-TYPE 14 32 96 24 102 32 12 33

Figure S13.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TP53 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S14.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
TP53 MUTATED 12 17 65 68 2
TP53 WILD-TYPE 84 135 51 21 54

Figure S14.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S15.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
TP53 MUTATED 47 52 10 174 9
TP53 WILD-TYPE 320 174 81 67 28

Figure S15.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TP53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S16.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
TP53 MUTATED 85 13 48 11 33
TP53 WILD-TYPE 31 168 109 72 78

Figure S16.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TP53 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S17.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
TP53 MUTATED 94 10 33
TP53 WILD-TYPE 52 119 85

Figure S17.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'TP53 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S18.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
TP53 MUTATED 4 18 67 30 18
TP53 WILD-TYPE 55 91 23 74 13

Figure S18.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S19.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
TP53 MUTATED 131 12 17 90 31 7 6
TP53 WILD-TYPE 48 123 198 66 194 41 9

Figure S19.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S20.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
TP53 MUTATED 125 24 13 73 19 40
TP53 WILD-TYPE 43 198 175 99 152 12

Figure S20.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S21.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
TP53 MUTATED 30 81 177
TP53 WILD-TYPE 240 332 97

Figure S21.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S22.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
TP53 MUTATED 12 14 92 94 76
TP53 WILD-TYPE 140 160 298 31 40

Figure S22.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S23.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
TP53 MUTATED 42 24 130
TP53 WILD-TYPE 206 193 57

Figure S23.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S24.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
TP53 MUTATED 83 5 42 14 8 44
TP53 WILD-TYPE 32 58 147 103 100 16

Figure S24.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CDH1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00035 (Fisher's exact test), Q value = 0.55

Table S25.  Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
CDH1 MUTATED 0 6 2 1 10 6 1 7
CDH1 WILD-TYPE 21 32 112 96 98 67 18 32

Figure S25.  Get High-res Image Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CDH1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00607 (Fisher's exact test), Q value = 1

Table S26.  Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
CDH1 MUTATED 4 19 7 1 2
CDH1 WILD-TYPE 92 133 109 88 54

Figure S26.  Get High-res Image Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CDH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S27.  Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
CDH1 MUTATED 62 12 24 2 4
CDH1 WILD-TYPE 305 214 67 239 33

Figure S27.  Get High-res Image Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CDH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S28.  Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
CDH1 MUTATED 0 25 19 18 20
CDH1 WILD-TYPE 116 156 138 65 91

Figure S28.  Get High-res Image Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CDH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00852 (Fisher's exact test), Q value = 1

Table S29.  Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
CDH1 MUTATED 5 4 14
CDH1 WILD-TYPE 141 125 104

Figure S29.  Get High-res Image Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CDH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0194 (Fisher's exact test), Q value = 1

Table S30.  Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
CDH1 MUTATED 1 12 1 7 2
CDH1 WILD-TYPE 58 97 89 97 29

Figure S30.  Get High-res Image Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'CDH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S31.  Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
CDH1 MUTATED 1 32 34 11 12 15 1
CDH1 WILD-TYPE 178 103 181 145 213 33 14

Figure S31.  Get High-res Image Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CDH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S32.  Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
CDH1 MUTATED 1 59 20 15 8 3
CDH1 WILD-TYPE 167 163 168 157 163 49

Figure S32.  Get High-res Image Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CDH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S33.  Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
CDH1 MUTATED 76 24 4
CDH1 WILD-TYPE 194 389 270

Figure S33.  Get High-res Image Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CDH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S34.  Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
CDH1 MUTATED 54 17 31 0 2
CDH1 WILD-TYPE 98 157 359 125 114

Figure S34.  Get High-res Image Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S35.  Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
CDH1 MUTATED 13 64 3
CDH1 WILD-TYPE 235 153 184

Figure S35.  Get High-res Image Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S36.  Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
CDH1 MUTATED 0 9 12 5 52 2
CDH1 WILD-TYPE 115 54 177 112 56 58

Figure S36.  Get High-res Image Gene #3: 'CDH1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GATA3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S37.  Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
GATA3 MUTATED 1 6 27 2 18 4 2 0
GATA3 WILD-TYPE 20 32 87 95 90 69 17 39

Figure S37.  Get High-res Image Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GATA3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S38.  Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
GATA3 MUTATED 28 22 5 1 4
GATA3 WILD-TYPE 68 130 111 88 52

Figure S38.  Get High-res Image Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'GATA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00114 (Fisher's exact test), Q value = 1

Table S39.  Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
GATA3 MUTATED 43 30 12 10 1
GATA3 WILD-TYPE 324 196 79 231 36

Figure S39.  Get High-res Image Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GATA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.048

Table S40.  Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
GATA3 MUTATED 0 22 19 11 5
GATA3 WILD-TYPE 116 159 138 72 106

Figure S40.  Get High-res Image Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'GATA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0158 (Fisher's exact test), Q value = 1

Table S41.  Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
GATA3 MUTATED 12 24 10
GATA3 WILD-TYPE 134 105 108

Figure S41.  Get High-res Image Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'GATA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.19

Table S42.  Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
GATA3 MUTATED 12 8 2 21 3
GATA3 WILD-TYPE 47 101 88 83 28

Figure S42.  Get High-res Image Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'GATA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S43.  Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
GATA3 MUTATED 1 14 33 6 41 1 0
GATA3 WILD-TYPE 178 121 182 150 184 47 15

Figure S43.  Get High-res Image Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'GATA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S44.  Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
GATA3 MUTATED 0 12 36 15 33 0
GATA3 WILD-TYPE 168 210 152 157 138 52

Figure S44.  Get High-res Image Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'GATA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S45.  Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
GATA3 MUTATED 21 65 9
GATA3 WILD-TYPE 249 348 265

Figure S45.  Get High-res Image Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'GATA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S46.  Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
GATA3 MUTATED 11 24 56 0 4
GATA3 WILD-TYPE 141 150 334 125 112

Figure S46.  Get High-res Image Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GATA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S47.  Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
GATA3 MUTATED 47 16 4
GATA3 WILD-TYPE 201 201 183

Figure S47.  Get High-res Image Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'GATA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S48.  Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
GATA3 MUTATED 0 7 37 17 6 0
GATA3 WILD-TYPE 115 56 152 100 102 60

Figure S48.  Get High-res Image Gene #4: 'GATA3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MAP3K1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.048

Table S49.  Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
MAP3K1 MUTATED 5 1 12 1 16 1 0 3
MAP3K1 WILD-TYPE 16 37 102 96 92 72 19 36

Figure S49.  Get High-res Image Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MAP3K1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00015 (Fisher's exact test), Q value = 0.24

Table S50.  Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
MAP3K1 MUTATED 9 13 4 1 12
MAP3K1 WILD-TYPE 87 139 112 88 44

Figure S50.  Get High-res Image Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MAP3K1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00101 (Fisher's exact test), Q value = 1

Table S51.  Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
MAP3K1 MUTATED 41 14 7 6 2
MAP3K1 WILD-TYPE 326 212 84 235 35

Figure S51.  Get High-res Image Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MAP3K1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0507 (Fisher's exact test), Q value = 1

Table S52.  Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
MAP3K1 MUTATED 3 18 5 5 7
MAP3K1 WILD-TYPE 113 163 152 78 104
'MAP3K1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00056 (Fisher's exact test), Q value = 0.88

Table S53.  Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
MAP3K1 MUTATED 4 20 12
MAP3K1 WILD-TYPE 142 109 106

Figure S52.  Get High-res Image Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MAP3K1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.016

Table S54.  Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
MAP3K1 MUTATED 16 14 1 5 0
MAP3K1 WILD-TYPE 43 95 89 99 31

Figure S53.  Get High-res Image Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'MAP3K1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00021 (Fisher's exact test), Q value = 0.33

Table S55.  Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
MAP3K1 MUTATED 3 14 24 4 21 4 0
MAP3K1 WILD-TYPE 176 121 191 152 204 44 15

Figure S54.  Get High-res Image Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MAP3K1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.095

Table S56.  Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
MAP3K1 MUTATED 3 19 23 8 17 0
MAP3K1 WILD-TYPE 165 203 165 164 154 52

Figure S55.  Get High-res Image Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MAP3K1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.21

Table S57.  Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
MAP3K1 MUTATED 27 37 6
MAP3K1 WILD-TYPE 243 376 268

Figure S56.  Get High-res Image Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MAP3K1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00021 (Fisher's exact test), Q value = 0.33

Table S58.  Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
MAP3K1 MUTATED 19 21 24 2 4
MAP3K1 WILD-TYPE 133 153 366 123 112

Figure S57.  Get High-res Image Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MAP3K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00043 (Fisher's exact test), Q value = 0.68

Table S59.  Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
MAP3K1 MUTATED 26 18 3
MAP3K1 WILD-TYPE 222 199 184

Figure S58.  Get High-res Image Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MAP3K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0208 (Fisher's exact test), Q value = 1

Table S60.  Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
MAP3K1 MUTATED 3 8 12 12 11 1
MAP3K1 WILD-TYPE 112 55 177 105 97 59

Figure S59.  Get High-res Image Gene #5: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RUNX1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0159 (Fisher's exact test), Q value = 1

Table S61.  Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
RUNX1 MUTATED 3 1 3 0 5 2 0 4
RUNX1 WILD-TYPE 18 37 111 97 103 71 19 35

Figure S60.  Get High-res Image Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'RUNX1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0869 (Fisher's exact test), Q value = 1

Table S62.  Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
RUNX1 MUTATED 3 10 3 0 2
RUNX1 WILD-TYPE 93 142 113 89 54
'RUNX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00508 (Fisher's exact test), Q value = 1

Table S63.  Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
RUNX1 MUTATED 17 3 6 2 0
RUNX1 WILD-TYPE 350 223 85 239 37

Figure S61.  Get High-res Image Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RUNX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 1

Table S64.  Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
RUNX1 MUTATED 2 3 4 6 4
RUNX1 WILD-TYPE 114 178 153 77 107
'RUNX1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S65.  Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
RUNX1 MUTATED 4 3 3
RUNX1 WILD-TYPE 142 126 115
'RUNX1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 1

Table S66.  Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
RUNX1 MUTATED 1 4 0 4 1
RUNX1 WILD-TYPE 58 105 90 100 30
'RUNX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0478 (Fisher's exact test), Q value = 1

Table S67.  Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
RUNX1 MUTATED 1 7 10 6 3 2 0
RUNX1 WILD-TYPE 178 128 205 150 222 46 15

Figure S62.  Get High-res Image Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'RUNX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0299 (Fisher's exact test), Q value = 1

Table S68.  Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
RUNX1 MUTATED 1 9 8 9 2 0
RUNX1 WILD-TYPE 167 213 180 163 169 52

Figure S63.  Get High-res Image Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RUNX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0134 (Fisher's exact test), Q value = 1

Table S69.  Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
RUNX1 MUTATED 12 15 2
RUNX1 WILD-TYPE 258 398 272

Figure S64.  Get High-res Image Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RUNX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 1

Table S70.  Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
RUNX1 MUTATED 8 5 13 1 2
RUNX1 WILD-TYPE 144 169 377 124 114
'RUNX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 1

Table S71.  Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
RUNX1 MUTATED 7 10 3
RUNX1 WILD-TYPE 241 207 184
'RUNX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S72.  Gene #6: 'RUNX1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
RUNX1 MUTATED 1 3 6 2 6 2
RUNX1 WILD-TYPE 114 60 183 115 102 58
'PTEN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S73.  Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
PTEN MUTATED 2 2 3 1 4 1 0 0
PTEN WILD-TYPE 19 36 111 96 104 72 19 39
'PTEN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S74.  Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
PTEN MUTATED 3 5 3 1 1
PTEN WILD-TYPE 93 147 113 88 55
'PTEN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 1

Table S75.  Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
PTEN MUTATED 14 6 6 8 1
PTEN WILD-TYPE 353 220 85 233 36
'PTEN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 1

Table S76.  Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
PTEN MUTATED 6 5 9 3 6
PTEN WILD-TYPE 110 176 148 80 105
'PTEN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S77.  Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
PTEN MUTATED 3 4 3
PTEN WILD-TYPE 143 125 115
'PTEN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.975 (Fisher's exact test), Q value = 1

Table S78.  Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
PTEN MUTATED 2 3 2 3 0
PTEN WILD-TYPE 57 106 88 101 31
'PTEN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S79.  Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
PTEN MUTATED 4 8 6 8 7 1 1
PTEN WILD-TYPE 175 127 209 148 218 47 14
'PTEN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S80.  Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
PTEN MUTATED 5 7 7 10 3 3
PTEN WILD-TYPE 163 215 181 162 168 49
'PTEN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S81.  Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
PTEN MUTATED 11 16 8
PTEN WILD-TYPE 259 397 266
'PTEN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S82.  Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
PTEN MUTATED 8 3 15 4 5
PTEN WILD-TYPE 144 171 375 121 111
'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S83.  Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
PTEN MUTATED 7 13 6
PTEN WILD-TYPE 241 204 181
'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S84.  Gene #7: 'PTEN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
PTEN MUTATED 5 3 6 4 5 3
PTEN WILD-TYPE 110 60 183 113 103 57
'ARID1A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S85.  Gene #8: 'ARID1A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ARID1A MUTATED 3 1 4 2 3 1 0 1
ARID1A WILD-TYPE 18 37 110 95 105 72 19 38
'ARID1A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S86.  Gene #8: 'ARID1A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ARID1A MUTATED 4 5 3 2 1
ARID1A WILD-TYPE 92 147 113 87 55
'ARID1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0839 (Fisher's exact test), Q value = 1

Table S87.  Gene #8: 'ARID1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
ARID1A MUTATED 9 11 1 3 2
ARID1A WILD-TYPE 358 215 90 238 35
'ARID1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S88.  Gene #8: 'ARID1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ARID1A MUTATED 1 6 6 4 1
ARID1A WILD-TYPE 115 175 151 79 110
'ARID1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S89.  Gene #8: 'ARID1A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
ARID1A MUTATED 4 3 3
ARID1A WILD-TYPE 142 126 115
'ARID1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S90.  Gene #8: 'ARID1A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
ARID1A MUTATED 2 1 1 4 2
ARID1A WILD-TYPE 57 108 89 100 29
'ARID1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S91.  Gene #8: 'ARID1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
ARID1A MUTATED 2 3 3 5 13 1 0
ARID1A WILD-TYPE 177 132 212 151 212 47 15
'ARID1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S92.  Gene #8: 'ARID1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
ARID1A MUTATED 2 7 5 6 6 1
ARID1A WILD-TYPE 166 215 183 166 165 51
'ARID1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S93.  Gene #8: 'ARID1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
ARID1A MUTATED 8 15 4
ARID1A WILD-TYPE 262 398 270
'ARID1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0708 (Fisher's exact test), Q value = 1

Table S94.  Gene #8: 'ARID1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
ARID1A MUTATED 1 10 10 2 4
ARID1A WILD-TYPE 151 164 380 123 112
'ARID1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S95.  Gene #8: 'ARID1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
ARID1A MUTATED 6 7 1
ARID1A WILD-TYPE 242 210 186
'ARID1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S96.  Gene #8: 'ARID1A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
ARID1A MUTATED 0 1 4 4 3 2
ARID1A WILD-TYPE 115 62 185 113 105 58
'CBFB MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0934 (Fisher's exact test), Q value = 1

Table S97.  Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
CBFB MUTATED 1 1 0 1 6 2 0 0
CBFB WILD-TYPE 20 37 114 96 102 71 19 39
'CBFB MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 1

Table S98.  Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
CBFB MUTATED 0 6 2 1 2
CBFB WILD-TYPE 96 146 114 88 54
'CBFB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.02 (Fisher's exact test), Q value = 1

Table S99.  Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
CBFB MUTATED 13 4 5 1 0
CBFB WILD-TYPE 354 222 86 240 37

Figure S65.  Get High-res Image Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CBFB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 1

Table S100.  Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
CBFB MUTATED 0 7 4 3 1
CBFB WILD-TYPE 116 174 153 80 110
'CBFB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S101.  Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
CBFB MUTATED 1 6 3
CBFB WILD-TYPE 145 123 115
'CBFB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0811 (Fisher's exact test), Q value = 1

Table S102.  Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
CBFB MUTATED 5 2 2 1 0
CBFB WILD-TYPE 54 107 88 103 31
'CBFB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.048

Table S103.  Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
CBFB MUTATED 1 3 17 2 0 0 0
CBFB WILD-TYPE 178 132 198 154 225 48 15

Figure S66.  Get High-res Image Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CBFB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00036 (Fisher's exact test), Q value = 0.57

Table S104.  Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
CBFB MUTATED 1 3 14 3 1 1
CBFB WILD-TYPE 167 219 174 169 170 51

Figure S67.  Get High-res Image Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CBFB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0133 (Fisher's exact test), Q value = 1

Table S105.  Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
CBFB MUTATED 10 11 1
CBFB WILD-TYPE 260 402 273

Figure S68.  Get High-res Image Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CBFB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00341 (Fisher's exact test), Q value = 1

Table S106.  Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
CBFB MUTATED 7 1 14 0 0
CBFB WILD-TYPE 145 173 376 125 116

Figure S69.  Get High-res Image Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CBFB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0052 (Fisher's exact test), Q value = 1

Table S107.  Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
CBFB MUTATED 11 4 0
CBFB WILD-TYPE 237 213 187

Figure S70.  Get High-res Image Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CBFB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00133 (Fisher's exact test), Q value = 1

Table S108.  Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
CBFB MUTATED 0 6 7 1 1 0
CBFB WILD-TYPE 115 57 182 116 107 60

Figure S71.  Get High-res Image Gene #9: 'CBFB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MLL3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 1

Table S109.  Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
MLL3 MUTATED 1 1 8 5 12 4 1 4
MLL3 WILD-TYPE 20 37 106 92 96 69 18 35
'MLL3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S110.  Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
MLL3 MUTATED 6 10 6 5 9
MLL3 WILD-TYPE 90 142 110 84 47
'MLL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S111.  Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
MLL3 MUTATED 29 16 9 11 2
MLL3 WILD-TYPE 338 210 82 230 35
'MLL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S112.  Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
MLL3 MUTATED 5 18 14 7 6
MLL3 WILD-TYPE 111 163 143 76 105
'MLL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S113.  Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
MLL3 MUTATED 10 6 9
MLL3 WILD-TYPE 136 123 109
'MLL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S114.  Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
MLL3 MUTATED 6 6 7 4 2
MLL3 WILD-TYPE 53 103 83 100 29
'MLL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0436 (Fisher's exact test), Q value = 1

Table S115.  Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
MLL3 MUTATED 8 9 24 14 14 0 0
MLL3 WILD-TYPE 171 126 191 142 211 48 15

Figure S72.  Get High-res Image Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MLL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S116.  Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
MLL3 MUTATED 8 11 20 17 10 3
MLL3 WILD-TYPE 160 211 168 155 161 49
'MLL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0624 (Fisher's exact test), Q value = 1

Table S117.  Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
MLL3 MUTATED 20 35 11
MLL3 WILD-TYPE 250 378 263
'MLL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S118.  Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
MLL3 MUTATED 11 14 31 4 6
MLL3 WILD-TYPE 141 160 359 121 110
'MLL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 1

Table S119.  Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
MLL3 MUTATED 20 14 7
MLL3 WILD-TYPE 228 203 180
'MLL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S120.  Gene #10: 'MLL3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
MLL3 MUTATED 3 2 17 6 8 5
MLL3 WILD-TYPE 112 61 172 111 100 55
'FOXA1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S121.  Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
FOXA1 MUTATED 0 0 3 0 1 2 0 2
FOXA1 WILD-TYPE 21 38 111 97 107 71 19 37
'FOXA1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S122.  Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
FOXA1 MUTATED 3 2 2 0 1
FOXA1 WILD-TYPE 93 150 114 89 55
'FOXA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0538 (Fisher's exact test), Q value = 1

Table S123.  Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
FOXA1 MUTATED 14 5 3 1 0
FOXA1 WILD-TYPE 353 221 88 240 37
'FOXA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0446 (Fisher's exact test), Q value = 1

Table S124.  Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
FOXA1 MUTATED 0 5 9 1 2
FOXA1 WILD-TYPE 116 176 148 82 109

Figure S73.  Get High-res Image Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FOXA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S125.  Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
FOXA1 MUTATED 2 3 2
FOXA1 WILD-TYPE 144 126 116
'FOXA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S126.  Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
FOXA1 MUTATED 1 2 1 3 0
FOXA1 WILD-TYPE 58 107 89 101 31
'FOXA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0731 (Fisher's exact test), Q value = 1

Table S127.  Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
FOXA1 MUTATED 1 2 8 4 4 4 0
FOXA1 WILD-TYPE 178 133 207 152 221 44 15
'FOXA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 1

Table S128.  Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
FOXA1 MUTATED 1 10 4 5 3 0
FOXA1 WILD-TYPE 167 212 184 167 168 52
'FOXA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S129.  Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
FOXA1 MUTATED 10 10 3
FOXA1 WILD-TYPE 260 403 271
'FOXA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S130.  Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
FOXA1 MUTATED 5 5 10 1 2
FOXA1 WILD-TYPE 147 169 380 124 114
'FOXA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0757 (Fisher's exact test), Q value = 1

Table S131.  Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
FOXA1 MUTATED 9 7 1
FOXA1 WILD-TYPE 239 210 186
'FOXA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S132.  Gene #11: 'FOXA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
FOXA1 MUTATED 1 3 7 2 3 1
FOXA1 WILD-TYPE 114 60 182 115 105 59
'MAP2K4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0576 (Fisher's exact test), Q value = 1

Table S133.  Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
MAP2K4 MUTATED 0 3 3 0 8 2 1 2
MAP2K4 WILD-TYPE 21 35 111 97 100 71 18 37
'MAP2K4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00423 (Fisher's exact test), Q value = 1

Table S134.  Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
MAP2K4 MUTATED 2 9 2 0 6
MAP2K4 WILD-TYPE 94 143 114 89 50

Figure S74.  Get High-res Image Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MAP2K4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0419 (Fisher's exact test), Q value = 1

Table S135.  Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
MAP2K4 MUTATED 13 7 7 3 2
MAP2K4 WILD-TYPE 354 219 84 238 35

Figure S75.  Get High-res Image Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MAP2K4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.047 (Fisher's exact test), Q value = 1

Table S136.  Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
MAP2K4 MUTATED 1 13 7 2 2
MAP2K4 WILD-TYPE 115 168 150 81 109

Figure S76.  Get High-res Image Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MAP2K4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00234 (Fisher's exact test), Q value = 1

Table S137.  Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
MAP2K4 MUTATED 0 5 8
MAP2K4 WILD-TYPE 146 124 110

Figure S77.  Get High-res Image Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MAP2K4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.292 (Fisher's exact test), Q value = 1

Table S138.  Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
MAP2K4 MUTATED 2 7 1 3 0
MAP2K4 WILD-TYPE 57 102 89 101 31
'MAP2K4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0058 (Fisher's exact test), Q value = 1

Table S139.  Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
MAP2K4 MUTATED 0 3 12 3 12 1 1
MAP2K4 WILD-TYPE 179 132 203 153 213 47 14

Figure S78.  Get High-res Image Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MAP2K4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00791 (Fisher's exact test), Q value = 1

Table S140.  Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
MAP2K4 MUTATED 0 10 8 4 10 0
MAP2K4 WILD-TYPE 168 212 180 168 161 52

Figure S79.  Get High-res Image Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MAP2K4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00046 (Fisher's exact test), Q value = 0.73

Table S141.  Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
MAP2K4 MUTATED 6 24 2
MAP2K4 WILD-TYPE 264 389 272

Figure S80.  Get High-res Image Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MAP2K4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00054 (Fisher's exact test), Q value = 0.85

Table S142.  Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
MAP2K4 MUTATED 1 12 18 0 1
MAP2K4 WILD-TYPE 151 162 372 125 115

Figure S81.  Get High-res Image Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MAP2K4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.048

Table S143.  Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
MAP2K4 MUTATED 17 3 0
MAP2K4 WILD-TYPE 231 214 187

Figure S82.  Get High-res Image Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'MAP2K4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0016 (Fisher's exact test), Q value = 1

Table S144.  Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
MAP2K4 MUTATED 0 1 14 4 1 0
MAP2K4 WILD-TYPE 115 62 175 113 107 60

Figure S83.  Get High-res Image Gene #12: 'MAP2K4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RBMX MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S145.  Gene #13: 'RBMX MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
RBMX MUTATED 0 0 0 3 2 0 0 1
RBMX WILD-TYPE 21 38 114 94 106 73 19 38
'RBMX MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 1

Table S146.  Gene #13: 'RBMX MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
RBMX MUTATED 0 3 0 3 0
RBMX WILD-TYPE 96 149 116 86 56
'RBMX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0973 (Fisher's exact test), Q value = 1

Table S147.  Gene #13: 'RBMX MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
RBMX MUTATED 6 0 1 6 1
RBMX WILD-TYPE 361 226 90 235 36
'RBMX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S148.  Gene #13: 'RBMX MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
RBMX MUTATED 3 0 4 2 2
RBMX WILD-TYPE 113 181 153 81 109
'RBMX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S149.  Gene #13: 'RBMX MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
RBMX MUTATED 2 2 0
RBMX WILD-TYPE 144 127 118
'RBMX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.585 (Fisher's exact test), Q value = 1

Table S150.  Gene #13: 'RBMX MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
RBMX MUTATED 1 1 2 0 0
RBMX WILD-TYPE 58 108 88 104 31
'RBMX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0728 (Fisher's exact test), Q value = 1

Table S151.  Gene #13: 'RBMX MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
RBMX MUTATED 5 2 3 2 0 1 1
RBMX WILD-TYPE 174 133 212 154 225 47 14
'RBMX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 1

Table S152.  Gene #13: 'RBMX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
RBMX MUTATED 5 4 2 2 0 1
RBMX WILD-TYPE 163 218 186 170 171 51
'RBMX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S153.  Gene #13: 'RBMX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
RBMX MUTATED 3 5 6
RBMX WILD-TYPE 267 408 268
'RBMX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S154.  Gene #13: 'RBMX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
RBMX MUTATED 2 1 5 3 3
RBMX WILD-TYPE 150 173 385 122 113
'RBMX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S155.  Gene #13: 'RBMX MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
RBMX MUTATED 2 2 5
RBMX WILD-TYPE 246 215 182
'RBMX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S156.  Gene #13: 'RBMX MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
RBMX MUTATED 3 1 1 1 2 1
RBMX WILD-TYPE 112 62 188 116 106 59
'TBX3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S157.  Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
TBX3 MUTATED 0 1 3 2 7 1 0 2
TBX3 WILD-TYPE 21 37 111 95 101 72 19 37
'TBX3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S158.  Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
TBX3 MUTATED 3 6 3 1 3
TBX3 WILD-TYPE 93 146 113 88 53
'TBX3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S159.  Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
TBX3 MUTATED 13 6 4 3 1
TBX3 WILD-TYPE 354 220 87 238 36
'TBX3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S160.  Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
TBX3 MUTATED 1 7 2 3 3
TBX3 WILD-TYPE 115 174 155 80 108
'TBX3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0828 (Fisher's exact test), Q value = 1

Table S161.  Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
TBX3 MUTATED 1 3 6
TBX3 WILD-TYPE 145 126 112
'TBX3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.975 (Fisher's exact test), Q value = 1

Table S162.  Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
TBX3 MUTATED 2 3 2 3 0
TBX3 WILD-TYPE 57 106 88 101 31
'TBX3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S163.  Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
TBX3 MUTATED 2 8 9 2 5 1 0
TBX3 WILD-TYPE 177 127 206 154 220 47 15
'TBX3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S164.  Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
TBX3 MUTATED 2 10 7 4 3 1
TBX3 WILD-TYPE 166 212 181 168 168 51
'TBX3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0983 (Fisher's exact test), Q value = 1

Table S165.  Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
TBX3 MUTATED 10 14 3
TBX3 WILD-TYPE 260 399 271
'TBX3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0855 (Fisher's exact test), Q value = 1

Table S166.  Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
TBX3 MUTATED 8 8 8 1 2
TBX3 WILD-TYPE 144 166 382 124 114
'TBX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S167.  Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
TBX3 MUTATED 6 7 2
TBX3 WILD-TYPE 242 210 185
'TBX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0244 (Fisher's exact test), Q value = 1

Table S168.  Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
TBX3 MUTATED 1 4 2 1 6 1
TBX3 WILD-TYPE 114 59 187 116 102 59

Figure S84.  Get High-res Image Gene #14: 'TBX3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'THEM5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 1

Table S169.  Gene #15: 'THEM5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
THEM5 MUTATED 1 0 1 0 3 0 0 0
THEM5 WILD-TYPE 20 38 113 97 105 73 19 39
'THEM5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S170.  Gene #15: 'THEM5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
THEM5 MUTATED 1 2 1 0 1
THEM5 WILD-TYPE 95 150 115 89 55
'THEM5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S171.  Gene #15: 'THEM5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
THEM5 MUTATED 2 3 3 3 0
THEM5 WILD-TYPE 365 223 88 238 37
'THEM5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S172.  Gene #15: 'THEM5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
THEM5 MUTATED 0 1 3 1 3
THEM5 WILD-TYPE 116 180 154 82 108
'THEM5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S173.  Gene #15: 'THEM5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
THEM5 MUTATED 1 3 0
THEM5 WILD-TYPE 145 126 118
'THEM5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S174.  Gene #15: 'THEM5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
THEM5 MUTATED 2 0 0 2 0
THEM5 WILD-TYPE 57 109 90 102 31
'THEM5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S175.  Gene #15: 'THEM5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
THEM5 MUTATED 1 1 3 1 3 1 0
THEM5 WILD-TYPE 178 134 212 155 222 47 15
'THEM5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.994 (Fisher's exact test), Q value = 1

Table S176.  Gene #15: 'THEM5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
THEM5 MUTATED 1 3 2 2 2 0
THEM5 WILD-TYPE 167 219 186 170 169 52
'THEM5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S177.  Gene #15: 'THEM5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
THEM5 MUTATED 4 4 2
THEM5 WILD-TYPE 266 409 272
'THEM5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S178.  Gene #15: 'THEM5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
THEM5 MUTATED 1 2 6 1 0
THEM5 WILD-TYPE 151 172 384 124 116
'THEM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S179.  Gene #15: 'THEM5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
THEM5 MUTATED 3 4 2
THEM5 WILD-TYPE 245 213 185
'THEM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S180.  Gene #15: 'THEM5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
THEM5 MUTATED 1 0 2 4 2 0
THEM5 WILD-TYPE 114 63 187 113 106 60
'RB1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S181.  Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
RB1 MUTATED 0 0 2 4 2 2 0 0
RB1 WILD-TYPE 21 38 112 93 106 71 19 39
'RB1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S182.  Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
RB1 MUTATED 2 1 4 3 0
RB1 WILD-TYPE 94 151 112 86 56
'RB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0729 (Fisher's exact test), Q value = 1

Table S183.  Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
RB1 MUTATED 3 4 4 8 0
RB1 WILD-TYPE 364 222 87 233 37
'RB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S184.  Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
RB1 MUTATED 5 2 2 2 0
RB1 WILD-TYPE 111 179 155 81 111
'RB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S185.  Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
RB1 MUTATED 5 3 1
RB1 WILD-TYPE 141 126 117
'RB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S186.  Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
RB1 MUTATED 1 2 4 2 0
RB1 WILD-TYPE 58 107 86 102 31
'RB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 1

Table S187.  Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
RB1 MUTATED 7 0 4 5 3 0 0
RB1 WILD-TYPE 172 135 211 151 222 48 15
'RB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0279 (Fisher's exact test), Q value = 1

Table S188.  Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
RB1 MUTATED 6 0 2 6 4 1
RB1 WILD-TYPE 162 222 186 166 167 51

Figure S85.  Get High-res Image Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0507 (Fisher's exact test), Q value = 1

Table S189.  Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
RB1 MUTATED 1 7 8
RB1 WILD-TYPE 269 406 266
'RB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0312 (Fisher's exact test), Q value = 1

Table S190.  Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
RB1 MUTATED 0 2 6 2 6
RB1 WILD-TYPE 152 172 384 123 110

Figure S86.  Get High-res Image Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00831 (Fisher's exact test), Q value = 1

Table S191.  Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
RB1 MUTATED 5 0 7
RB1 WILD-TYPE 243 217 180

Figure S87.  Get High-res Image Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'RB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S192.  Gene #16: 'RB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
RB1 MUTATED 4 1 2 2 0 3
RB1 WILD-TYPE 111 62 187 115 108 57
'NF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S193.  Gene #17: 'NF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
NF1 MUTATED 1 0 2 3 4 2 0 3
NF1 WILD-TYPE 20 38 112 94 104 71 19 36
'NF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S194.  Gene #17: 'NF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
NF1 MUTATED 2 4 3 3 3
NF1 WILD-TYPE 94 148 113 86 53
'NF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S195.  Gene #17: 'NF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
NF1 MUTATED 13 3 3 7 0
NF1 WILD-TYPE 354 223 88 234 37
'NF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 1

Table S196.  Gene #17: 'NF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
NF1 MUTATED 3 2 7 1 6
NF1 WILD-TYPE 113 179 150 82 105
'NF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S197.  Gene #17: 'NF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
NF1 MUTATED 4 5 4
NF1 WILD-TYPE 142 124 114
'NF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S198.  Gene #17: 'NF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
NF1 MUTATED 0 6 2 5 0
NF1 WILD-TYPE 59 103 88 99 31
'NF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0919 (Fisher's exact test), Q value = 1

Table S199.  Gene #17: 'NF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
NF1 MUTATED 6 2 4 8 3 3 1
NF1 WILD-TYPE 173 133 211 148 222 45 14
'NF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0989 (Fisher's exact test), Q value = 1

Table S200.  Gene #17: 'NF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
NF1 MUTATED 6 7 1 9 3 1
NF1 WILD-TYPE 162 215 187 163 168 51
'NF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S201.  Gene #17: 'NF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
NF1 MUTATED 8 12 6
NF1 WILD-TYPE 262 401 268
'NF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S202.  Gene #17: 'NF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
NF1 MUTATED 4 4 11 5 2
NF1 WILD-TYPE 148 170 379 120 114
'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S203.  Gene #17: 'NF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
NF1 MUTATED 9 4 4
NF1 WILD-TYPE 239 213 183
'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S204.  Gene #17: 'NF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
NF1 MUTATED 3 1 7 1 3 2
NF1 WILD-TYPE 112 62 182 116 105 58
'ACTL6B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S205.  Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ACTL6B MUTATED 1 0 1 2 0 2 0 0
ACTL6B WILD-TYPE 20 38 113 95 108 71 19 39
'ACTL6B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S206.  Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ACTL6B MUTATED 1 0 2 2 1
ACTL6B WILD-TYPE 95 152 114 87 55
'ACTL6B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0373 (Fisher's exact test), Q value = 1

Table S207.  Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
ACTL6B MUTATED 2 1 0 5 2
ACTL6B WILD-TYPE 365 225 91 236 35

Figure S88.  Get High-res Image Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ACTL6B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S208.  Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ACTL6B MUTATED 3 3 1 0 0
ACTL6B WILD-TYPE 113 178 156 83 111
'ACTL6B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S209.  Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
ACTL6B MUTATED 2 1 2
ACTL6B WILD-TYPE 144 128 116
'ACTL6B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S210.  Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
ACTL6B MUTATED 0 3 2 0 0
ACTL6B WILD-TYPE 59 106 88 104 31
'ACTL6B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S211.  Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
ACTL6B MUTATED 3 0 2 2 2 1 0
ACTL6B WILD-TYPE 176 135 213 154 223 47 15
'ACTL6B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S212.  Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
ACTL6B MUTATED 3 1 1 2 2 1
ACTL6B WILD-TYPE 165 221 187 170 169 51
'ACTL6B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S213.  Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
ACTL6B MUTATED 2 6 2
ACTL6B WILD-TYPE 268 407 272
'ACTL6B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S214.  Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
ACTL6B MUTATED 1 3 3 2 1
ACTL6B WILD-TYPE 151 171 387 123 115
'ACTL6B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S215.  Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
ACTL6B MUTATED 2 1 2
ACTL6B WILD-TYPE 246 216 185
'ACTL6B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S216.  Gene #18: 'ACTL6B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
ACTL6B MUTATED 1 0 2 1 1 0
ACTL6B WILD-TYPE 114 63 187 116 107 60
'SPEN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S217.  Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
SPEN MUTATED 0 1 4 2 8 3 1 1
SPEN WILD-TYPE 21 37 110 95 100 70 18 38
'SPEN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S218.  Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
SPEN MUTATED 4 8 5 2 1
SPEN WILD-TYPE 92 144 111 87 55
'SPEN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S219.  Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
SPEN MUTATED 15 5 4 5 1
SPEN WILD-TYPE 352 221 87 236 36
'SPEN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S220.  Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
SPEN MUTATED 1 6 9 3 5
SPEN WILD-TYPE 115 175 148 80 106
'SPEN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S221.  Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
SPEN MUTATED 6 4 4
SPEN WILD-TYPE 140 125 114
'SPEN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S222.  Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
SPEN MUTATED 1 5 2 3 3
SPEN WILD-TYPE 58 104 88 101 28
'SPEN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 1

Table S223.  Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
SPEN MUTATED 2 4 10 5 7 2 2
SPEN WILD-TYPE 177 131 205 151 218 46 13
'SPEN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 1

Table S224.  Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
SPEN MUTATED 2 7 7 11 4 1
SPEN WILD-TYPE 166 215 181 161 167 51
'SPEN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.025 (Fisher's exact test), Q value = 1

Table S225.  Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
SPEN MUTATED 10 19 3
SPEN WILD-TYPE 260 394 271

Figure S89.  Get High-res Image Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SPEN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0291 (Fisher's exact test), Q value = 1

Table S226.  Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
SPEN MUTATED 3 7 20 2 0
SPEN WILD-TYPE 149 167 370 123 116

Figure S90.  Get High-res Image Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SPEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S227.  Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
SPEN MUTATED 5 7 2
SPEN WILD-TYPE 243 210 185
'SPEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0653 (Fisher's exact test), Q value = 1

Table S228.  Gene #19: 'SPEN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
SPEN MUTATED 0 1 7 1 5 0
SPEN WILD-TYPE 115 62 182 116 103 60
'CDKN1B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S229.  Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
CDKN1B MUTATED 0 0 1 0 3 1 0 1
CDKN1B WILD-TYPE 21 38 113 97 105 72 19 38
'CDKN1B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S230.  Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
CDKN1B MUTATED 1 3 1 0 1
CDKN1B WILD-TYPE 95 149 115 89 55
'CDKN1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S231.  Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
CDKN1B MUTATED 5 1 3 1 0
CDKN1B WILD-TYPE 362 225 88 240 37
'CDKN1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 1

Table S232.  Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
CDKN1B MUTATED 0 3 0 1 1
CDKN1B WILD-TYPE 116 178 157 82 110
'CDKN1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S233.  Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
CDKN1B MUTATED 1 2 2
CDKN1B WILD-TYPE 145 127 116
'CDKN1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S234.  Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
CDKN1B MUTATED 2 2 0 1 0
CDKN1B WILD-TYPE 57 107 90 103 31
'CDKN1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0825 (Fisher's exact test), Q value = 1

Table S235.  Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
CDKN1B MUTATED 0 1 5 2 1 0 1
CDKN1B WILD-TYPE 179 134 210 154 224 48 14
'CDKN1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 1

Table S236.  Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
CDKN1B MUTATED 0 4 4 2 0 0
CDKN1B WILD-TYPE 168 218 184 170 171 52
'CDKN1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0232 (Fisher's exact test), Q value = 1

Table S237.  Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
CDKN1B MUTATED 6 4 0
CDKN1B WILD-TYPE 264 409 274

Figure S91.  Get High-res Image Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CDKN1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S238.  Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
CDKN1B MUTATED 2 2 6 0 0
CDKN1B WILD-TYPE 150 172 384 125 116
'CDKN1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S239.  Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
CDKN1B MUTATED 3 3 0
CDKN1B WILD-TYPE 245 214 187
'CDKN1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S240.  Gene #20: 'CDKN1B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
CDKN1B MUTATED 0 1 3 0 2 0
CDKN1B WILD-TYPE 115 62 186 117 106 60
'NCOR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S241.  Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
NCOR1 MUTATED 0 2 4 3 7 3 0 0
NCOR1 WILD-TYPE 21 36 110 94 101 70 19 39
'NCOR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.967 (Fisher's exact test), Q value = 1

Table S242.  Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
NCOR1 MUTATED 3 6 4 3 3
NCOR1 WILD-TYPE 93 146 112 86 53
'NCOR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.969 (Fisher's exact test), Q value = 1

Table S243.  Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
NCOR1 MUTATED 16 10 4 8 1
NCOR1 WILD-TYPE 351 216 87 233 36
'NCOR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S244.  Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
NCOR1 MUTATED 4 7 9 6 4
NCOR1 WILD-TYPE 112 174 148 77 107
'NCOR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S245.  Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
NCOR1 MUTATED 5 2 5
NCOR1 WILD-TYPE 141 127 113
'NCOR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 1

Table S246.  Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
NCOR1 MUTATED 1 5 2 2 2
NCOR1 WILD-TYPE 58 104 88 102 29
'NCOR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S247.  Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
NCOR1 MUTATED 6 6 10 10 7 1 1
NCOR1 WILD-TYPE 173 129 205 146 218 47 14
'NCOR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 1

Table S248.  Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
NCOR1 MUTATED 6 7 8 14 4 2
NCOR1 WILD-TYPE 162 215 180 158 167 50
'NCOR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S249.  Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
NCOR1 MUTATED 12 19 10
NCOR1 WILD-TYPE 258 394 264
'NCOR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 1

Table S250.  Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
NCOR1 MUTATED 7 3 22 5 4
NCOR1 WILD-TYPE 145 171 368 120 112
'NCOR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S251.  Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
NCOR1 MUTATED 9 8 7
NCOR1 WILD-TYPE 239 209 180
'NCOR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S252.  Gene #21: 'NCOR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
NCOR1 MUTATED 3 1 10 1 7 2
NCOR1 WILD-TYPE 112 62 179 116 101 58
'SF3B1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S253.  Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
SF3B1 MUTATED 0 0 1 1 3 2 0 1
SF3B1 WILD-TYPE 21 38 113 96 105 71 19 38
'SF3B1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S254.  Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
SF3B1 MUTATED 1 4 2 1 0
SF3B1 WILD-TYPE 95 148 114 88 56
'SF3B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S255.  Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
SF3B1 MUTATED 6 7 1 2 0
SF3B1 WILD-TYPE 361 219 90 239 37
'SF3B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0462 (Fisher's exact test), Q value = 1

Table S256.  Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
SF3B1 MUTATED 0 7 5 2 0
SF3B1 WILD-TYPE 116 174 152 81 111

Figure S92.  Get High-res Image Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'SF3B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S257.  Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
SF3B1 MUTATED 1 1 3
SF3B1 WILD-TYPE 145 128 115
'SF3B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S258.  Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
SF3B1 MUTATED 0 4 1 0 0
SF3B1 WILD-TYPE 59 105 89 104 31
'SF3B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S259.  Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
SF3B1 MUTATED 1 3 6 3 2 1 0
SF3B1 WILD-TYPE 178 132 209 153 223 47 15
'SF3B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S260.  Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
SF3B1 MUTATED 1 5 4 4 2 0
SF3B1 WILD-TYPE 167 217 184 168 169 52
'SF3B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0447 (Fisher's exact test), Q value = 1

Table S261.  Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
SF3B1 MUTATED 8 7 1
SF3B1 WILD-TYPE 262 406 273

Figure S93.  Get High-res Image Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SF3B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S262.  Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
SF3B1 MUTATED 3 5 5 1 2
SF3B1 WILD-TYPE 149 169 385 124 114
'SF3B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S263.  Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
SF3B1 MUTATED 4 3 1
SF3B1 WILD-TYPE 244 214 186
'SF3B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S264.  Gene #22: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
SF3B1 MUTATED 0 1 2 4 1 0
SF3B1 WILD-TYPE 115 62 187 113 107 60
'ZFP36L1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S265.  Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ZFP36L1 MUTATED 1 0 1 0 1 1 0 1
ZFP36L1 WILD-TYPE 20 38 113 97 107 72 19 38
'ZFP36L1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S266.  Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ZFP36L1 MUTATED 1 2 2 0 0
ZFP36L1 WILD-TYPE 95 150 114 89 56
'ZFP36L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00632 (Fisher's exact test), Q value = 1

Table S267.  Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
ZFP36L1 MUTATED 1 4 3 0 1
ZFP36L1 WILD-TYPE 366 222 88 241 36

Figure S94.  Get High-res Image Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZFP36L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.055 (Fisher's exact test), Q value = 1

Table S268.  Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ZFP36L1 MUTATED 1 0 4 0 0
ZFP36L1 WILD-TYPE 115 181 153 83 111
'ZFP36L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 1

Table S269.  Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
ZFP36L1 MUTATED 0 0 3
ZFP36L1 WILD-TYPE 146 129 115

Figure S95.  Get High-res Image Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ZFP36L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S270.  Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
ZFP36L1 MUTATED 0 3 0 0 0
ZFP36L1 WILD-TYPE 59 106 90 104 31
'ZFP36L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S271.  Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
ZFP36L1 MUTATED 1 0 1 2 5 0 0
ZFP36L1 WILD-TYPE 178 135 214 154 220 48 15
'ZFP36L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 1

Table S272.  Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
ZFP36L1 MUTATED 1 1 0 2 4 1
ZFP36L1 WILD-TYPE 167 221 188 170 167 51
'ZFP36L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S273.  Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
ZFP36L1 MUTATED 3 5 1
ZFP36L1 WILD-TYPE 267 408 273
'ZFP36L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S274.  Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
ZFP36L1 MUTATED 0 2 4 1 2
ZFP36L1 WILD-TYPE 152 172 386 124 114
'ZFP36L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S275.  Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
ZFP36L1 MUTATED 2 2 1
ZFP36L1 WILD-TYPE 246 215 186
'ZFP36L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S276.  Gene #23: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
ZFP36L1 MUTATED 1 0 2 1 0 1
ZFP36L1 WILD-TYPE 114 63 187 116 108 59
'KRAS MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S277.  Gene #24: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
KRAS MUTATED 0 0 0 1 2 0 0 1
KRAS WILD-TYPE 21 38 114 96 106 73 19 38
'KRAS MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S278.  Gene #24: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
KRAS MUTATED 0 2 1 0 1
KRAS WILD-TYPE 96 150 115 89 55
'KRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S279.  Gene #24: 'KRAS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
KRAS MUTATED 5 0 0 1 0
KRAS WILD-TYPE 362 226 91 240 37
'KRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 1

Table S280.  Gene #24: 'KRAS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
KRAS MUTATED 0 2 0 0 2
KRAS WILD-TYPE 116 179 157 83 109
'KRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S281.  Gene #24: 'KRAS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
KRAS MUTATED 0 1 2
KRAS WILD-TYPE 146 128 116
'KRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S282.  Gene #24: 'KRAS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
KRAS MUTATED 1 1 1 0 0
KRAS WILD-TYPE 58 108 89 104 31
'KRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S283.  Gene #24: 'KRAS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
KRAS MUTATED 0 1 3 2 0 0 0
KRAS WILD-TYPE 179 134 212 154 225 48 15
'KRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S284.  Gene #24: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
KRAS MUTATED 0 2 2 1 0 1
KRAS WILD-TYPE 168 220 186 171 171 51
'KRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S285.  Gene #24: 'KRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
KRAS MUTATED 1 4 1
KRAS WILD-TYPE 269 409 273
'KRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S286.  Gene #24: 'KRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
KRAS MUTATED 1 0 4 0 1
KRAS WILD-TYPE 151 174 386 125 115
'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S287.  Gene #24: 'KRAS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
KRAS MUTATED 3 1 1
KRAS WILD-TYPE 245 216 186
'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S288.  Gene #24: 'KRAS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
KRAS MUTATED 0 2 2 0 0 1
KRAS WILD-TYPE 115 61 187 117 108 59
'TCP11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S289.  Gene #25: 'TCP11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
TCP11 MUTATED 0 1 2 1 1 0 0 1
TCP11 WILD-TYPE 21 37 112 96 107 73 19 38
'TCP11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S290.  Gene #25: 'TCP11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
TCP11 MUTATED 2 3 0 1 0
TCP11 WILD-TYPE 94 149 116 88 56
'TCP11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S291.  Gene #25: 'TCP11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
TCP11 MUTATED 3 1 0 1 1
TCP11 WILD-TYPE 364 225 91 240 36
'TCP11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S292.  Gene #25: 'TCP11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
TCP11 MUTATED 2 1 2
TCP11 WILD-TYPE 144 128 116
'TCP11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S293.  Gene #25: 'TCP11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
TCP11 MUTATED 0 2 1 2 0
TCP11 WILD-TYPE 59 107 89 102 31
'TCP11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S294.  Gene #25: 'TCP11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
TCP11 MUTATED 1 2 1 0 2 0 0
TCP11 WILD-TYPE 178 133 214 156 223 48 15
'TCP11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S295.  Gene #25: 'TCP11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
TCP11 MUTATED 1 3 1 1 0 0
TCP11 WILD-TYPE 167 219 187 171 171 52
'TCP11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S296.  Gene #25: 'TCP11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
TCP11 MUTATED 2 3 1
TCP11 WILD-TYPE 268 410 273
'TCP11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S297.  Gene #25: 'TCP11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
TCP11 MUTATED 2 1 2 1 0
TCP11 WILD-TYPE 150 173 388 124 116
'AQP12A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S298.  Gene #26: 'AQP12A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
AQP12A MUTATED 0 1 1 0 1 0 0 0
AQP12A WILD-TYPE 21 37 113 97 107 73 19 39
'AQP12A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S299.  Gene #26: 'AQP12A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
AQP12A MUTATED 1 2 0 0 0
AQP12A WILD-TYPE 95 150 116 89 56
'AQP12A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S300.  Gene #26: 'AQP12A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
AQP12A MUTATED 1 4 0 1 0
AQP12A WILD-TYPE 366 222 91 240 37
'AQP12A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S301.  Gene #26: 'AQP12A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
AQP12A MUTATED 1 0 3 0 0
AQP12A WILD-TYPE 115 181 154 83 111
'AQP12A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S302.  Gene #26: 'AQP12A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
AQP12A MUTATED 0 1 2
AQP12A WILD-TYPE 146 128 116
'AQP12A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S303.  Gene #26: 'AQP12A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
AQP12A MUTATED 0 0 0 3 0
AQP12A WILD-TYPE 59 109 90 101 31
'AQP12A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S304.  Gene #26: 'AQP12A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
AQP12A MUTATED 0 1 2 2 1 0 0
AQP12A WILD-TYPE 179 134 213 154 224 48 15
'AQP12A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S305.  Gene #26: 'AQP12A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
AQP12A MUTATED 1 1 1 1 2 0
AQP12A WILD-TYPE 167 221 187 171 169 52
'AQP12A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S306.  Gene #26: 'AQP12A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
AQP12A MUTATED 1 3 2
AQP12A WILD-TYPE 269 410 272
'AQP12A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S307.  Gene #26: 'AQP12A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
AQP12A MUTATED 0 3 2 1 0
AQP12A WILD-TYPE 152 171 388 124 116
'AQP12A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S308.  Gene #26: 'AQP12A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
AQP12A MUTATED 2 1 1
AQP12A WILD-TYPE 246 216 186
'AQP12A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S309.  Gene #26: 'AQP12A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
AQP12A MUTATED 1 0 2 0 1 0
AQP12A WILD-TYPE 114 63 187 117 107 60
'DLG1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S310.  Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
DLG1 MUTATED 0 2 1 0 2 2 0 0
DLG1 WILD-TYPE 21 36 113 97 106 71 19 39
'DLG1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S311.  Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
DLG1 MUTATED 0 4 2 0 1
DLG1 WILD-TYPE 96 148 114 89 55
'DLG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S312.  Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
DLG1 MUTATED 6 1 1 5 0
DLG1 WILD-TYPE 361 225 90 236 37
'DLG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S313.  Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
DLG1 MUTATED 3 1 1 0 4
DLG1 WILD-TYPE 113 180 156 83 107
'DLG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S314.  Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
DLG1 MUTATED 2 3 2
DLG1 WILD-TYPE 144 126 116
'DLG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0959 (Fisher's exact test), Q value = 1

Table S315.  Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
DLG1 MUTATED 2 2 0 1 2
DLG1 WILD-TYPE 57 107 90 103 29
'DLG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0726 (Fisher's exact test), Q value = 1

Table S316.  Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
DLG1 MUTATED 2 2 1 5 1 1 1
DLG1 WILD-TYPE 177 133 214 151 224 47 14
'DLG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S317.  Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
DLG1 MUTATED 1 4 2 4 0 2
DLG1 WILD-TYPE 167 218 186 168 171 50
'DLG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S318.  Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
DLG1 MUTATED 3 3 6
DLG1 WILD-TYPE 267 410 268
'DLG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0194 (Fisher's exact test), Q value = 1

Table S319.  Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
DLG1 MUTATED 0 1 6 0 5
DLG1 WILD-TYPE 152 173 384 125 111

Figure S96.  Get High-res Image Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DLG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S320.  Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
DLG1 MUTATED 2 3 3
DLG1 WILD-TYPE 246 214 184
'DLG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S321.  Gene #27: 'DLG1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
DLG1 MUTATED 1 1 3 0 1 2
DLG1 WILD-TYPE 114 62 186 117 107 58
'MYB MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S322.  Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
MYB MUTATED 0 0 2 2 4 0 0 1
MYB WILD-TYPE 21 38 112 95 104 73 19 38
'MYB MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0284 (Fisher's exact test), Q value = 1

Table S323.  Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
MYB MUTATED 0 2 1 2 4
MYB WILD-TYPE 96 150 115 87 52

Figure S97.  Get High-res Image Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MYB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S324.  Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
MYB MUTATED 6 1 3 2 0
MYB WILD-TYPE 361 225 88 239 37
'MYB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 1

Table S325.  Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
MYB MUTATED 2 1 1 1 0
MYB WILD-TYPE 114 180 156 82 111
'MYB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S326.  Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
MYB MUTATED 2 2 1
MYB WILD-TYPE 144 127 117
'MYB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S327.  Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
MYB MUTATED 2 1 1 1 0
MYB WILD-TYPE 57 108 89 103 31
'MYB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S328.  Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
MYB MUTATED 3 1 3 1 3 1 0
MYB WILD-TYPE 176 134 212 155 222 47 15
'MYB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S329.  Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
MYB MUTATED 3 2 6 1 0 0
MYB WILD-TYPE 165 220 182 171 171 52
'MYB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 1

Table S330.  Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
MYB MUTATED 3 7 2
MYB WILD-TYPE 267 406 272
'MYB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S331.  Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
MYB MUTATED 1 4 5 1 1
MYB WILD-TYPE 151 170 385 124 115
'MYB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0538 (Fisher's exact test), Q value = 1

Table S332.  Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
MYB MUTATED 5 0 1
MYB WILD-TYPE 243 217 186
'MYB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S333.  Gene #28: 'MYB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
MYB MUTATED 2 1 2 1 0 0
MYB WILD-TYPE 113 62 187 116 108 60
'RPGR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.968 (Fisher's exact test), Q value = 1

Table S334.  Gene #29: 'RPGR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
RPGR MUTATED 0 1 3 3 2 2 1 1
RPGR WILD-TYPE 21 37 111 94 106 71 18 38
'RPGR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S335.  Gene #29: 'RPGR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
RPGR MUTATED 3 5 2 3 0
RPGR WILD-TYPE 93 147 114 86 56
'RPGR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S336.  Gene #29: 'RPGR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
RPGR MUTATED 6 5 2 4 0
RPGR WILD-TYPE 361 221 89 237 37
'RPGR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 1

Table S337.  Gene #29: 'RPGR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
RPGR MUTATED 2 2 5 1 4
RPGR WILD-TYPE 114 179 152 82 107
'RPGR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S338.  Gene #29: 'RPGR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
RPGR MUTATED 5 4 2
RPGR WILD-TYPE 141 125 116
'RPGR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S339.  Gene #29: 'RPGR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
RPGR MUTATED 0 2 3 6 0
RPGR WILD-TYPE 59 107 87 98 31
'RPGR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S340.  Gene #29: 'RPGR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
RPGR MUTATED 4 1 4 4 5 0 1
RPGR WILD-TYPE 175 134 211 152 220 48 14
'RPGR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.57 (Fisher's exact test), Q value = 1

Table S341.  Gene #29: 'RPGR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
RPGR MUTATED 4 4 1 5 4 1
RPGR WILD-TYPE 164 218 187 167 167 51
'RPGR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S342.  Gene #29: 'RPGR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
RPGR MUTATED 3 9 6
RPGR WILD-TYPE 267 404 268
'RPGR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S343.  Gene #29: 'RPGR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
RPGR MUTATED 2 3 9 0 4
RPGR WILD-TYPE 150 171 381 125 112
'RPGR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S344.  Gene #29: 'RPGR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
RPGR MUTATED 4 2 3
RPGR WILD-TYPE 244 215 184
'RPGR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S345.  Gene #29: 'RPGR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
RPGR MUTATED 2 0 4 1 1 1
RPGR WILD-TYPE 113 63 185 116 107 59
'TBL1XR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S346.  Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
TBL1XR1 MUTATED 1 0 1 0 5 1 0 0
TBL1XR1 WILD-TYPE 20 38 113 97 103 72 19 39
'TBL1XR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0823 (Fisher's exact test), Q value = 1

Table S347.  Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
TBL1XR1 MUTATED 0 3 2 0 3
TBL1XR1 WILD-TYPE 96 149 114 89 53
'TBL1XR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0501 (Fisher's exact test), Q value = 1

Table S348.  Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
TBL1XR1 MUTATED 6 1 3 0 0
TBL1XR1 WILD-TYPE 361 225 88 241 37
'TBL1XR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S349.  Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
TBL1XR1 MUTATED 0 1 1 0 1
TBL1XR1 WILD-TYPE 116 180 156 83 110
'TBL1XR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S350.  Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
TBL1XR1 MUTATED 2 4 1
TBL1XR1 WILD-TYPE 144 125 117
'TBL1XR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S351.  Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
TBL1XR1 MUTATED 3 2 0 1 1
TBL1XR1 WILD-TYPE 56 107 90 103 30
'TBL1XR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0575 (Fisher's exact test), Q value = 1

Table S352.  Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
TBL1XR1 MUTATED 0 2 6 2 0 0 0
TBL1XR1 WILD-TYPE 179 133 209 154 225 48 15
'TBL1XR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0342 (Fisher's exact test), Q value = 1

Table S353.  Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
TBL1XR1 MUTATED 0 3 6 1 0 0
TBL1XR1 WILD-TYPE 168 219 182 171 171 52

Figure S98.  Get High-res Image Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TBL1XR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 1

Table S354.  Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
TBL1XR1 MUTATED 2 7 1
TBL1XR1 WILD-TYPE 268 406 273
'TBL1XR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S355.  Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
TBL1XR1 MUTATED 2 1 7 0 0
TBL1XR1 WILD-TYPE 150 173 383 125 116
'TBL1XR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S356.  Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
TBL1XR1 MUTATED 4 2 1
TBL1XR1 WILD-TYPE 244 215 186
'TBL1XR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S357.  Gene #30: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
TBL1XR1 MUTATED 0 1 5 0 1 0
TBL1XR1 WILD-TYPE 115 62 184 117 107 60
'KDM6A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S358.  Gene #31: 'KDM6A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
KDM6A MUTATED 0 1 1 2 3 0 0 1
KDM6A WILD-TYPE 21 37 113 95 105 73 19 38
'KDM6A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.344 (Fisher's exact test), Q value = 1

Table S359.  Gene #31: 'KDM6A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
KDM6A MUTATED 2 4 0 2 0
KDM6A WILD-TYPE 94 148 116 87 56
'KDM6A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S360.  Gene #31: 'KDM6A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
KDM6A MUTATED 5 3 4 3 1
KDM6A WILD-TYPE 362 223 87 238 36
'KDM6A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S361.  Gene #31: 'KDM6A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
KDM6A MUTATED 2 3 3 2 0
KDM6A WILD-TYPE 114 178 154 81 111
'KDM6A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S362.  Gene #31: 'KDM6A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
KDM6A MUTATED 4 2 1
KDM6A WILD-TYPE 142 127 117
'KDM6A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S363.  Gene #31: 'KDM6A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
KDM6A MUTATED 1 1 2 3 0
KDM6A WILD-TYPE 58 108 88 101 31
'KDM6A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S364.  Gene #31: 'KDM6A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
KDM6A MUTATED 5 3 1 2 4 1 0
KDM6A WILD-TYPE 174 132 214 154 221 47 15
'KDM6A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S365.  Gene #31: 'KDM6A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
KDM6A MUTATED 5 4 1 4 2 0
KDM6A WILD-TYPE 163 218 187 168 169 52
'KDM6A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S366.  Gene #31: 'KDM6A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
KDM6A MUTATED 5 6 5
KDM6A WILD-TYPE 265 407 269
'KDM6A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S367.  Gene #31: 'KDM6A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
KDM6A MUTATED 1 5 4 4 2
KDM6A WILD-TYPE 151 169 386 121 114
'KDM6A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 1

Table S368.  Gene #31: 'KDM6A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
KDM6A MUTATED 6 1 5
KDM6A WILD-TYPE 242 216 182
'KDM6A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 1

Table S369.  Gene #31: 'KDM6A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
KDM6A MUTATED 5 1 5 0 1 0
KDM6A WILD-TYPE 110 62 184 117 107 60
'MYH9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S370.  Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
MYH9 MUTATED 0 1 0 2 2 1 1 1
MYH9 WILD-TYPE 21 37 114 95 106 72 18 38
'MYH9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S371.  Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
MYH9 MUTATED 0 4 3 1 0
MYH9 WILD-TYPE 96 148 113 88 56
'MYH9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S372.  Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
MYH9 MUTATED 11 3 0 2 0
MYH9 WILD-TYPE 356 223 91 239 37
'MYH9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 1

Table S373.  Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
MYH9 MUTATED 2 3 6 1 1
MYH9 WILD-TYPE 114 178 151 82 110
'MYH9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S374.  Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
MYH9 MUTATED 4 2 2
MYH9 WILD-TYPE 142 127 116
'MYH9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0208 (Fisher's exact test), Q value = 1

Table S375.  Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
MYH9 MUTATED 1 3 1 0 3
MYH9 WILD-TYPE 58 106 89 104 28

Figure S99.  Get High-res Image Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'MYH9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S376.  Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
MYH9 MUTATED 3 3 5 5 1 1 0
MYH9 WILD-TYPE 176 132 210 151 224 47 15
'MYH9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S377.  Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
MYH9 MUTATED 3 5 4 3 1 2
MYH9 WILD-TYPE 165 217 184 169 170 50
'MYH9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S378.  Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
MYH9 MUTATED 6 8 4
MYH9 WILD-TYPE 264 405 270
'MYH9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S379.  Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
MYH9 MUTATED 3 4 7 3 1
MYH9 WILD-TYPE 149 170 383 122 115
'MYH9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S380.  Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
MYH9 MUTATED 4 6 3
MYH9 WILD-TYPE 244 211 184
'MYH9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S381.  Gene #32: 'MYH9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
MYH9 MUTATED 2 0 3 1 4 3
MYH9 WILD-TYPE 113 63 186 116 104 57
'HLA-C MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S382.  Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
HLA-C MUTATED 0 1 0 0 0 1 0 1
HLA-C WILD-TYPE 21 37 114 97 108 72 19 38
'HLA-C MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S383.  Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
HLA-C MUTATED 0 2 1 0 0
HLA-C WILD-TYPE 96 150 115 89 56
'HLA-C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S384.  Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
HLA-C MUTATED 3 2 0 4 0
HLA-C WILD-TYPE 364 224 91 237 37
'HLA-C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S385.  Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
HLA-C MUTATED 4 2 1 0 1
HLA-C WILD-TYPE 112 179 156 83 110
'HLA-C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S386.  Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
HLA-C MUTATED 1 0 2
HLA-C WILD-TYPE 145 129 116
'HLA-C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S387.  Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
HLA-C MUTATED 0 1 0 2 0
HLA-C WILD-TYPE 59 108 90 102 31
'HLA-C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S388.  Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
HLA-C MUTATED 4 1 3 1 0 0 0
HLA-C WILD-TYPE 175 134 212 155 225 48 15
'HLA-C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 1

Table S389.  Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
HLA-C MUTATED 4 2 2 1 0 0
HLA-C WILD-TYPE 164 220 186 171 171 52
'HLA-C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S390.  Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
HLA-C MUTATED 2 2 5
HLA-C WILD-TYPE 268 411 269
'HLA-C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00634 (Fisher's exact test), Q value = 1

Table S391.  Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
HLA-C MUTATED 1 3 0 4 1
HLA-C WILD-TYPE 151 171 390 121 115

Figure S100.  Get High-res Image Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'HLA-C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S392.  Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
HLA-C MUTATED 1 1 4
HLA-C WILD-TYPE 247 216 183
'HLA-C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S393.  Gene #33: 'HLA-C MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
HLA-C MUTATED 4 0 1 0 1 0
HLA-C WILD-TYPE 111 63 188 117 107 60
'RAB42 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S394.  Gene #34: 'RAB42 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
RAB42 MUTATED 0 0 0 3 1 0 0 0
RAB42 WILD-TYPE 21 38 114 94 107 73 19 39
'RAB42 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0698 (Fisher's exact test), Q value = 1

Table S395.  Gene #34: 'RAB42 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
RAB42 MUTATED 0 1 0 3 0
RAB42 WILD-TYPE 96 151 116 86 56
'RAB42 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S396.  Gene #34: 'RAB42 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
RAB42 MUTATED 1 0 0 3 0
RAB42 WILD-TYPE 366 226 91 238 37
'RAB42 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S397.  Gene #34: 'RAB42 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
RAB42 MUTATED 1 0 2
RAB42 WILD-TYPE 145 129 116
'RAB42 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S398.  Gene #34: 'RAB42 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
RAB42 MUTATED 0 1 2 0 0
RAB42 WILD-TYPE 59 108 88 104 31
'RAB42 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 1

Table S399.  Gene #34: 'RAB42 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
RAB42 MUTATED 3 0 1 0 0 0 0
RAB42 WILD-TYPE 176 135 214 156 225 48 15
'RAB42 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 1

Table S400.  Gene #34: 'RAB42 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
RAB42 MUTATED 3 1 0 0 0 0
RAB42 WILD-TYPE 165 221 188 172 171 52
'RAB42 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 1

Table S401.  Gene #34: 'RAB42 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
RAB42 MUTATED 0 1 3
RAB42 WILD-TYPE 270 412 271
'RAB42 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0108 (Fisher's exact test), Q value = 1

Table S402.  Gene #34: 'RAB42 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
RAB42 MUTATED 0 1 0 3 0
RAB42 WILD-TYPE 152 173 390 122 116

Figure S101.  Get High-res Image Gene #34: 'RAB42 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FGFR2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S403.  Gene #35: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
FGFR2 MUTATED 0 0 1 1 2 2 0 0
FGFR2 WILD-TYPE 21 38 113 96 106 71 19 39
'FGFR2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S404.  Gene #35: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
FGFR2 MUTATED 1 1 2 1 1
FGFR2 WILD-TYPE 95 151 114 88 55
'FGFR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 1

Table S405.  Gene #35: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
FGFR2 MUTATED 3 3 3 2 0
FGFR2 WILD-TYPE 364 223 88 239 37
'FGFR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S406.  Gene #35: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
FGFR2 MUTATED 0 1 3 1 0
FGFR2 WILD-TYPE 116 180 154 82 111
'FGFR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S407.  Gene #35: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
FGFR2 MUTATED 2 2 1
FGFR2 WILD-TYPE 144 127 117
'FGFR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.917 (Fisher's exact test), Q value = 1

Table S408.  Gene #35: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
FGFR2 MUTATED 0 2 1 2 0
FGFR2 WILD-TYPE 59 107 89 102 31
'FGFR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S409.  Gene #35: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
FGFR2 MUTATED 1 0 3 3 3 0 1
FGFR2 WILD-TYPE 178 135 212 153 222 48 14
'FGFR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0731 (Fisher's exact test), Q value = 1

Table S410.  Gene #35: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
FGFR2 MUTATED 1 1 1 6 1 1
FGFR2 WILD-TYPE 167 221 187 166 170 51
'FGFR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S411.  Gene #35: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
FGFR2 MUTATED 2 4 5
FGFR2 WILD-TYPE 268 409 269
'FGFR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S412.  Gene #35: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
FGFR2 MUTATED 0 3 6 1 1
FGFR2 WILD-TYPE 152 171 384 124 115
'FGFR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S413.  Gene #35: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
FGFR2 MUTATED 1 2 4
FGFR2 WILD-TYPE 247 215 183
'FGFR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S414.  Gene #35: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
FGFR2 MUTATED 0 0 3 1 2 1
FGFR2 WILD-TYPE 115 63 186 116 106 59
'ERBB2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S415.  Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ERBB2 MUTATED 1 1 2 1 3 3 0 1
ERBB2 WILD-TYPE 20 37 112 96 105 70 19 38
'ERBB2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S416.  Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ERBB2 MUTATED 2 6 3 1 0
ERBB2 WILD-TYPE 94 146 113 88 56
'ERBB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0408 (Fisher's exact test), Q value = 1

Table S417.  Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
ERBB2 MUTATED 11 2 5 2 0
ERBB2 WILD-TYPE 356 224 86 239 37

Figure S102.  Get High-res Image Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ERBB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0577 (Fisher's exact test), Q value = 1

Table S418.  Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ERBB2 MUTATED 0 1 4 3 4
ERBB2 WILD-TYPE 116 180 153 80 107
'ERBB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S419.  Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
ERBB2 MUTATED 2 2 4
ERBB2 WILD-TYPE 144 127 114
'ERBB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S420.  Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
ERBB2 MUTATED 1 2 1 3 1
ERBB2 WILD-TYPE 58 107 89 101 30
'ERBB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0879 (Fisher's exact test), Q value = 1

Table S421.  Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
ERBB2 MUTATED 1 5 4 8 3 0 0
ERBB2 WILD-TYPE 178 130 211 148 222 48 15
'ERBB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 1

Table S422.  Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
ERBB2 MUTATED 1 7 2 5 3 3
ERBB2 WILD-TYPE 167 215 186 167 168 49
'ERBB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00189 (Fisher's exact test), Q value = 1

Table S423.  Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
ERBB2 MUTATED 10 10 0
ERBB2 WILD-TYPE 260 403 274

Figure S103.  Get High-res Image Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ERBB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S424.  Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
ERBB2 MUTATED 5 4 8 0 3
ERBB2 WILD-TYPE 147 170 382 125 113
'ERBB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 1

Table S425.  Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
ERBB2 MUTATED 5 6 1
ERBB2 WILD-TYPE 243 211 186
'ERBB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S426.  Gene #36: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
ERBB2 MUTATED 0 2 3 1 3 3
ERBB2 WILD-TYPE 115 61 186 116 105 57
'CTCF MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0588 (Fisher's exact test), Q value = 1

Table S427.  Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
CTCF MUTATED 1 0 2 1 8 0 0 1
CTCF WILD-TYPE 20 38 112 96 100 73 19 38
'CTCF MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0434 (Fisher's exact test), Q value = 1

Table S428.  Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
CTCF MUTATED 3 3 1 1 5
CTCF WILD-TYPE 93 149 115 88 51

Figure S104.  Get High-res Image Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CTCF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00385 (Fisher's exact test), Q value = 1

Table S429.  Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
CTCF MUTATED 14 1 0 1 1
CTCF WILD-TYPE 353 225 91 240 36

Figure S105.  Get High-res Image Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CTCF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0326 (Fisher's exact test), Q value = 1

Table S430.  Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
CTCF MUTATED 0 8 1 1 1
CTCF WILD-TYPE 116 173 156 82 110

Figure S106.  Get High-res Image Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CTCF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0631 (Fisher's exact test), Q value = 1

Table S431.  Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
CTCF MUTATED 1 7 3
CTCF WILD-TYPE 145 122 115
'CTCF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 1

Table S432.  Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
CTCF MUTATED 5 3 1 2 0
CTCF WILD-TYPE 54 106 89 102 31
'CTCF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0228 (Fisher's exact test), Q value = 1

Table S433.  Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
CTCF MUTATED 1 3 10 1 1 1 0
CTCF WILD-TYPE 178 132 205 155 224 47 15

Figure S107.  Get High-res Image Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CTCF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 1

Table S434.  Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
CTCF MUTATED 1 3 8 1 4 0
CTCF WILD-TYPE 167 219 180 171 167 52
'CTCF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0355 (Fisher's exact test), Q value = 1

Table S435.  Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
CTCF MUTATED 4 12 1
CTCF WILD-TYPE 266 401 273

Figure S108.  Get High-res Image Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CTCF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0118 (Fisher's exact test), Q value = 1

Table S436.  Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
CTCF MUTATED 2 9 5 0 1
CTCF WILD-TYPE 150 165 385 125 115

Figure S109.  Get High-res Image Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CTCF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S437.  Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
CTCF MUTATED 6 1 2
CTCF WILD-TYPE 242 216 185
'CTCF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S438.  Gene #37: 'CTCF MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
CTCF MUTATED 1 0 2 5 1 0
CTCF WILD-TYPE 114 63 187 112 107 60
'ZMYM3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S439.  Gene #38: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
ZMYM3 MUTATED 1 0 1 4 4 1 0 0
ZMYM3 WILD-TYPE 20 38 113 93 104 72 19 39
'ZMYM3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S440.  Gene #38: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
ZMYM3 MUTATED 1 4 1 4 1
ZMYM3 WILD-TYPE 95 148 115 85 55
'ZMYM3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S441.  Gene #38: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
ZMYM3 MUTATED 7 2 1 4 0
ZMYM3 WILD-TYPE 360 224 90 237 37
'ZMYM3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S442.  Gene #38: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
ZMYM3 MUTATED 3 1 1 0 1
ZMYM3 WILD-TYPE 113 180 156 83 110
'ZMYM3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 1

Table S443.  Gene #38: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
ZMYM3 MUTATED 5 2 0
ZMYM3 WILD-TYPE 141 127 118
'ZMYM3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S444.  Gene #38: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
ZMYM3 MUTATED 1 0 3 2 1
ZMYM3 WILD-TYPE 58 109 87 102 30
'ZMYM3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S445.  Gene #38: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
ZMYM3 MUTATED 4 0 5 1 4 0 0
ZMYM3 WILD-TYPE 175 135 210 155 221 48 15
'ZMYM3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.344 (Fisher's exact test), Q value = 1

Table S446.  Gene #38: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
ZMYM3 MUTATED 4 1 4 4 1 0
ZMYM3 WILD-TYPE 164 221 184 168 170 52
'ZMYM3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S447.  Gene #38: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
ZMYM3 MUTATED 2 7 5
ZMYM3 WILD-TYPE 268 406 269
'ZMYM3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S448.  Gene #38: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
ZMYM3 MUTATED 2 2 6 2 2
ZMYM3 WILD-TYPE 150 172 384 123 114
'ZMYM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S449.  Gene #38: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
ZMYM3 MUTATED 3 2 2
ZMYM3 WILD-TYPE 245 215 185
'ZMYM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S450.  Gene #38: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
ZMYM3 MUTATED 1 0 3 1 2 0
ZMYM3 WILD-TYPE 114 63 186 116 106 60
'FRMPD2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S451.  Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
FRMPD2 MUTATED 0 1 1 1 1 2 0 0
FRMPD2 WILD-TYPE 21 37 113 96 107 71 19 39
'FRMPD2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S452.  Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
FRMPD2 MUTATED 1 2 2 1 0
FRMPD2 WILD-TYPE 95 150 114 88 56
'FRMPD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S453.  Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
FRMPD2 MUTATED 4 3 0 4 1
FRMPD2 WILD-TYPE 363 223 91 237 36
'FRMPD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0963 (Fisher's exact test), Q value = 1

Table S454.  Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
FRMPD2 MUTATED 4 0 3 1 1
FRMPD2 WILD-TYPE 112 181 154 82 110
'FRMPD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S455.  Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
FRMPD2 MUTATED 2 0 2
FRMPD2 WILD-TYPE 144 129 116
'FRMPD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S456.  Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
FRMPD2 MUTATED 0 1 1 2 0
FRMPD2 WILD-TYPE 59 108 89 102 31
'FRMPD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S457.  Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
FRMPD2 MUTATED 4 1 2 3 1 1 0
FRMPD2 WILD-TYPE 175 134 213 153 224 47 15
'FRMPD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0378 (Fisher's exact test), Q value = 1

Table S458.  Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
FRMPD2 MUTATED 4 3 0 5 0 0
FRMPD2 WILD-TYPE 164 219 188 167 171 52

Figure S110.  Get High-res Image Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FRMPD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S459.  Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
FRMPD2 MUTATED 3 5 4
FRMPD2 WILD-TYPE 267 408 270
'FRMPD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S460.  Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
FRMPD2 MUTATED 2 1 5 3 1
FRMPD2 WILD-TYPE 150 173 385 122 115
'FRMPD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S461.  Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
FRMPD2 MUTATED 1 2 3
FRMPD2 WILD-TYPE 247 215 184
'FRMPD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S462.  Gene #39: 'FRMPD2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
FRMPD2 MUTATED 3 0 1 0 2 0
FRMPD2 WILD-TYPE 112 63 188 117 106 60
'TFE3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S463.  Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
TFE3 MUTATED 1 1 1 2 1 1 0 0
TFE3 WILD-TYPE 20 37 113 95 107 72 19 39
'TFE3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S464.  Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
TFE3 MUTATED 1 2 2 2 0
TFE3 WILD-TYPE 95 150 114 87 56
'TFE3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S465.  Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
TFE3 MUTATED 2 1 1 3 0
TFE3 WILD-TYPE 365 225 90 238 37
'TFE3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S466.  Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
TFE3 MUTATED 1 1 0 1 1
TFE3 WILD-TYPE 115 180 157 82 110
'TFE3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S467.  Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
TFE3 MUTATED 1 1 1
TFE3 WILD-TYPE 145 128 117
'TFE3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 1

Table S468.  Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
TFE3 MUTATED 0 0 1 2 0
TFE3 WILD-TYPE 59 109 89 102 31
'TFE3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S469.  Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
TFE3 MUTATED 2 2 0 1 2 0 0
TFE3 WILD-TYPE 177 133 215 155 223 48 15
'TFE3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S470.  Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
TFE3 MUTATED 2 1 0 1 2 1
TFE3 WILD-TYPE 166 221 188 171 169 51
'TFE3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S471.  Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
TFE3 MUTATED 3 2 2
TFE3 WILD-TYPE 267 411 272
'TFE3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0238 (Fisher's exact test), Q value = 1

Table S472.  Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
TFE3 MUTATED 1 2 0 1 3
TFE3 WILD-TYPE 151 172 390 124 113

Figure S111.  Get High-res Image Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TFE3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S473.  Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
TFE3 MUTATED 2 0 1
TFE3 WILD-TYPE 246 217 186
'TFE3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S474.  Gene #40: 'TFE3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
TFE3 MUTATED 1 1 1 0 0 0
TFE3 WILD-TYPE 114 62 188 117 108 60
'GPS2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0137 (Fisher's exact test), Q value = 1

Table S475.  Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
GPS2 MUTATED 0 4 2 0 1 0 0 1
GPS2 WILD-TYPE 21 34 112 97 107 73 19 38

Figure S112.  Get High-res Image Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'GPS2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0478 (Fisher's exact test), Q value = 1

Table S476.  Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
GPS2 MUTATED 2 6 0 0 0
GPS2 WILD-TYPE 94 146 116 89 56

Figure S113.  Get High-res Image Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'GPS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0603 (Fisher's exact test), Q value = 1

Table S477.  Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
GPS2 MUTATED 9 2 0 0 0
GPS2 WILD-TYPE 358 224 91 241 37
'GPS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S478.  Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
GPS2 MUTATED 2 1 4 1 0
GPS2 WILD-TYPE 114 180 153 82 111
'GPS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 1

Table S479.  Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
GPS2 MUTATED 0 2 2
GPS2 WILD-TYPE 146 127 116
'GPS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S480.  Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
GPS2 MUTATED 1 1 0 2 0
GPS2 WILD-TYPE 58 108 90 102 31
'GPS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 1

Table S481.  Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
GPS2 MUTATED 0 2 1 3 3 2 0
GPS2 WILD-TYPE 179 133 214 153 222 46 15
'GPS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0952 (Fisher's exact test), Q value = 1

Table S482.  Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
GPS2 MUTATED 0 5 1 1 2 2
GPS2 WILD-TYPE 168 217 187 171 169 50
'GPS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S483.  Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
GPS2 MUTATED 5 3 3
GPS2 WILD-TYPE 265 410 271
'GPS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S484.  Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
GPS2 MUTATED 2 3 4 0 2
GPS2 WILD-TYPE 150 171 386 125 114
'GPS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S485.  Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
GPS2 MUTATED 2 2 1
GPS2 WILD-TYPE 246 215 186
'GPS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S486.  Gene #41: 'GPS2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
GPS2 MUTATED 0 0 2 0 1 2
GPS2 WILD-TYPE 115 63 187 117 107 58
'DOCK11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S487.  Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
DOCK11 MUTATED 0 0 3 4 1 3 0 0
DOCK11 WILD-TYPE 21 38 111 93 107 70 19 39
'DOCK11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S488.  Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
DOCK11 MUTATED 2 2 5 2 0
DOCK11 WILD-TYPE 94 150 111 87 56
'DOCK11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 1

Table S489.  Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
DOCK11 MUTATED 8 2 1 9 0
DOCK11 WILD-TYPE 359 224 90 232 37
'DOCK11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S490.  Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
DOCK11 MUTATED 2 2 5 0 3
DOCK11 WILD-TYPE 114 179 152 83 108
'DOCK11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S491.  Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
DOCK11 MUTATED 5 2 1
DOCK11 WILD-TYPE 141 127 117
'DOCK11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0652 (Fisher's exact test), Q value = 1

Table S492.  Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
DOCK11 MUTATED 0 0 4 4 0
DOCK11 WILD-TYPE 59 109 86 100 31
'DOCK11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S493.  Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
DOCK11 MUTATED 5 1 2 7 5 0 0
DOCK11 WILD-TYPE 174 134 213 149 220 48 15
'DOCK11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0176 (Fisher's exact test), Q value = 1

Table S494.  Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
DOCK11 MUTATED 4 2 1 8 2 3
DOCK11 WILD-TYPE 164 220 187 164 169 49

Figure S114.  Get High-res Image Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'DOCK11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S495.  Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
DOCK11 MUTATED 4 8 8
DOCK11 WILD-TYPE 266 405 266
'DOCK11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.016 (Fisher's exact test), Q value = 1

Table S496.  Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
DOCK11 MUTATED 1 1 10 1 7
DOCK11 WILD-TYPE 151 173 380 124 109

Figure S115.  Get High-res Image Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'DOCK11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0407 (Fisher's exact test), Q value = 1

Table S497.  Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
DOCK11 MUTATED 2 3 8
DOCK11 WILD-TYPE 246 214 179

Figure S116.  Get High-res Image Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'DOCK11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 1

Table S498.  Gene #42: 'DOCK11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
DOCK11 MUTATED 3 0 3 1 2 4
DOCK11 WILD-TYPE 112 63 186 116 106 56
'HRNR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.988 (Fisher's exact test), Q value = 1

Table S499.  Gene #43: 'HRNR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
HRNR MUTATED 0 1 5 5 4 4 0 1
HRNR WILD-TYPE 21 37 109 92 104 69 19 38
'HRNR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S500.  Gene #43: 'HRNR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
HRNR MUTATED 2 7 4 5 2
HRNR WILD-TYPE 94 145 112 84 54
'HRNR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S501.  Gene #43: 'HRNR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
HRNR MUTATED 13 3 4 8 3
HRNR WILD-TYPE 354 223 87 233 34
'HRNR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S502.  Gene #43: 'HRNR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
HRNR MUTATED 4 6 3 4 3
HRNR WILD-TYPE 112 175 154 79 108
'HRNR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S503.  Gene #43: 'HRNR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
HRNR MUTATED 4 6 6
HRNR WILD-TYPE 142 123 112
'HRNR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S504.  Gene #43: 'HRNR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
HRNR MUTATED 2 3 3 6 2
HRNR WILD-TYPE 57 106 87 98 29
'HRNR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.987 (Fisher's exact test), Q value = 1

Table S505.  Gene #43: 'HRNR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
HRNR MUTATED 7 4 7 6 6 1 0
HRNR WILD-TYPE 172 131 208 150 219 47 15
'HRNR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S506.  Gene #43: 'HRNR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
HRNR MUTATED 7 8 5 4 4 3
HRNR WILD-TYPE 161 214 183 168 167 49
'HRNR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S507.  Gene #43: 'HRNR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
HRNR MUTATED 6 13 11
HRNR WILD-TYPE 264 400 263
'HRNR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 1

Table S508.  Gene #43: 'HRNR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
HRNR MUTATED 3 9 10 2 6
HRNR WILD-TYPE 149 165 380 123 110
'HRNR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S509.  Gene #43: 'HRNR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
HRNR MUTATED 7 6 4
HRNR WILD-TYPE 241 211 183
'HRNR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S510.  Gene #43: 'HRNR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
HRNR MUTATED 4 0 4 4 2 3
HRNR WILD-TYPE 111 63 185 113 106 57
'CASZ1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S511.  Gene #44: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
CASZ1 MUTATED 0 1 1 2 2 1 0 0
CASZ1 WILD-TYPE 21 37 113 95 106 72 19 39
'CASZ1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S512.  Gene #44: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
CASZ1 MUTATED 1 3 1 2 0
CASZ1 WILD-TYPE 95 149 115 87 56
'CASZ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.971 (Fisher's exact test), Q value = 1

Table S513.  Gene #44: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
CASZ1 MUTATED 5 4 1 3 0
CASZ1 WILD-TYPE 362 222 90 238 37
'CASZ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S514.  Gene #44: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
CASZ1 MUTATED 3 2 4 0 1
CASZ1 WILD-TYPE 113 179 153 83 110
'CASZ1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S515.  Gene #44: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
CASZ1 MUTATED 1 0 3
CASZ1 WILD-TYPE 145 129 115
'CASZ1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S516.  Gene #44: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
CASZ1 MUTATED 0 2 1 1 0
CASZ1 WILD-TYPE 59 107 89 103 31
'CASZ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.98 (Fisher's exact test), Q value = 1

Table S517.  Gene #44: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
CASZ1 MUTATED 4 2 3 2 3 0 0
CASZ1 WILD-TYPE 175 133 212 154 222 48 15
'CASZ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S518.  Gene #44: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
CASZ1 MUTATED 4 2 2 4 2 0
CASZ1 WILD-TYPE 164 220 186 168 169 52
'CASZ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S519.  Gene #44: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
CASZ1 MUTATED 4 6 3
CASZ1 WILD-TYPE 266 407 271
'CASZ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S520.  Gene #44: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
CASZ1 MUTATED 2 2 5 3 1
CASZ1 WILD-TYPE 150 172 385 122 115
'CASZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S521.  Gene #44: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
CASZ1 MUTATED 4 3 2
CASZ1 WILD-TYPE 244 214 185
'CASZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.958 (Fisher's exact test), Q value = 1

Table S522.  Gene #44: 'CASZ1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
CASZ1 MUTATED 2 1 3 1 2 0
CASZ1 WILD-TYPE 113 62 186 116 106 60
'CDC42EP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S523.  Gene #45: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
CDC42EP1 MUTATED 0 0 1 2 0 0 0 1
CDC42EP1 WILD-TYPE 21 38 113 95 108 73 19 38
'CDC42EP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 1

Table S524.  Gene #45: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
CDC42EP1 MUTATED 1 1 0 2 0
CDC42EP1 WILD-TYPE 95 151 116 87 56
'CDC42EP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S525.  Gene #45: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
CDC42EP1 MUTATED 2 0 1 2 0
CDC42EP1 WILD-TYPE 365 226 90 239 37
'CDC42EP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S526.  Gene #45: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
CDC42EP1 MUTATED 0 1 0 0 2
CDC42EP1 WILD-TYPE 116 180 157 83 109
'CDC42EP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S527.  Gene #45: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
CDC42EP1 MUTATED 2 1 1
CDC42EP1 WILD-TYPE 144 128 117
'CDC42EP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S528.  Gene #45: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
CDC42EP1 MUTATED 1 1 2 0 0
CDC42EP1 WILD-TYPE 58 108 88 104 31
'CDC42EP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S529.  Gene #45: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
CDC42EP1 MUTATED 2 1 0 0 1 1 0
CDC42EP1 WILD-TYPE 177 134 215 156 224 47 15
'CDC42EP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S530.  Gene #45: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
CDC42EP1 MUTATED 2 2 0 0 1 0
CDC42EP1 WILD-TYPE 166 220 188 172 170 52
'CDC42EP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S531.  Gene #45: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
CDC42EP1 MUTATED 2 1 2
CDC42EP1 WILD-TYPE 268 412 272
'CDC42EP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0843 (Fisher's exact test), Q value = 1

Table S532.  Gene #45: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
CDC42EP1 MUTATED 1 1 0 1 2
CDC42EP1 WILD-TYPE 151 173 390 124 114
'C1QTNF5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S533.  Gene #46: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
C1QTNF5 MUTATED 0 0 2 0 0 1 0 0
C1QTNF5 WILD-TYPE 21 38 112 97 108 72 19 39
'C1QTNF5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S534.  Gene #46: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
C1QTNF5 MUTATED 2 0 1 0 0
C1QTNF5 WILD-TYPE 94 152 115 89 56
'C1QTNF5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S535.  Gene #46: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
C1QTNF5 MUTATED 2 1 2 2 0
C1QTNF5 WILD-TYPE 365 225 89 239 37
'C1QTNF5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S536.  Gene #46: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
C1QTNF5 MUTATED 2 0 1
C1QTNF5 WILD-TYPE 144 129 117
'C1QTNF5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S537.  Gene #46: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
C1QTNF5 MUTATED 1 1 1 0 0
C1QTNF5 WILD-TYPE 58 108 89 104 31
'C1QTNF5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S538.  Gene #46: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
C1QTNF5 MUTATED 0 1 1 3 2 0 0
C1QTNF5 WILD-TYPE 179 134 214 153 223 48 15
'C1QTNF5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S539.  Gene #46: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
C1QTNF5 MUTATED 0 2 0 2 2 1
C1QTNF5 WILD-TYPE 168 220 188 170 169 51
'C1QTNF5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S540.  Gene #46: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
C1QTNF5 MUTATED 3 1 3
C1QTNF5 WILD-TYPE 267 412 271
'C1QTNF5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00993 (Fisher's exact test), Q value = 1

Table S541.  Gene #46: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
C1QTNF5 MUTATED 1 4 0 0 2
C1QTNF5 WILD-TYPE 151 170 390 125 114

Figure S117.  Get High-res Image Gene #46: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'C1QTNF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S542.  Gene #46: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
C1QTNF5 MUTATED 1 3 0
C1QTNF5 WILD-TYPE 247 214 187
'C1QTNF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S543.  Gene #46: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
C1QTNF5 MUTATED 0 0 1 0 3 0
C1QTNF5 WILD-TYPE 115 63 188 117 105 60
'TGS1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S544.  Gene #47: 'TGS1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
TGS1 MUTATED 1 0 1 1 1 2 0 0
TGS1 WILD-TYPE 20 38 113 96 107 71 19 39
'TGS1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S545.  Gene #47: 'TGS1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
TGS1 MUTATED 1 1 3 1 0
TGS1 WILD-TYPE 95 151 113 88 56
'TGS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S546.  Gene #47: 'TGS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
TGS1 MUTATED 7 2 0 2 1
TGS1 WILD-TYPE 360 224 91 239 36
'TGS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S547.  Gene #47: 'TGS1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
TGS1 MUTATED 0 4 4 0 3
TGS1 WILD-TYPE 116 177 153 83 108
'TGS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S548.  Gene #47: 'TGS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
TGS1 MUTATED 1 0 3
TGS1 WILD-TYPE 145 129 115
'TGS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S549.  Gene #47: 'TGS1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
TGS1 MUTATED 0 1 1 1 1
TGS1 WILD-TYPE 59 108 89 103 30
'TGS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S550.  Gene #47: 'TGS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
TGS1 MUTATED 2 1 3 4 2 1 0
TGS1 WILD-TYPE 177 134 212 152 223 47 15
'TGS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0796 (Fisher's exact test), Q value = 1

Table S551.  Gene #47: 'TGS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
TGS1 MUTATED 1 2 3 6 0 1
TGS1 WILD-TYPE 167 220 185 166 171 51
'TGS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S552.  Gene #47: 'TGS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
TGS1 MUTATED 4 8 1
TGS1 WILD-TYPE 266 405 273
'TGS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S553.  Gene #47: 'TGS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
TGS1 MUTATED 3 1 9 0 0
TGS1 WILD-TYPE 149 173 381 125 116
'TGS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S554.  Gene #47: 'TGS1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187
TGS1 MUTATED 3 3 1
TGS1 WILD-TYPE 245 214 186
'TGS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0866 (Fisher's exact test), Q value = 1

Table S555.  Gene #47: 'TGS1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 115 63 189 117 108 60
TGS1 MUTATED 0 0 3 0 4 0
TGS1 WILD-TYPE 115 63 186 117 104 60
'USP36 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S556.  Gene #48: 'USP36 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
ALL 21 38 114 97 108 73 19 39
USP36 MUTATED 0 0 2 3 2 0 0 0
USP36 WILD-TYPE 21 38 112 94 106 73 19 39
'USP36 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S557.  Gene #48: 'USP36 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 96 152 116 89 56
USP36 MUTATED 2 1 0 3 1
USP36 WILD-TYPE 94 151 116 86 55
'USP36 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S558.  Gene #48: 'USP36 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 367 226 91 241 37
USP36 MUTATED 3 2 1 2 0
USP36 WILD-TYPE 364 224 90 239 37
'USP36 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S559.  Gene #48: 'USP36 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 116 181 157 83 111
USP36 MUTATED 1 1 1 0 0
USP36 WILD-TYPE 115 180 156 83 111
'USP36 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S560.  Gene #48: 'USP36 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 146 129 118
USP36 MUTATED 3 3 1
USP36 WILD-TYPE 143 126 117
'USP36 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S561.  Gene #48: 'USP36 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 59 109 90 104 31
USP36 MUTATED 1 0 3 3 0
USP36 WILD-TYPE 58 109 87 101 31
'USP36 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S562.  Gene #48: 'USP36 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
ALL 179 135 215 156 225 48 15
USP36 MUTATED 3 0 2 0 3 0 0
USP36 WILD-TYPE 176 135 213 156 222 48 15
'USP36 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 1

Table S563.  Gene #48: 'USP36 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 168 222 188 172 171 52
USP36 MUTATED 3 0 2 0 3 0
USP36 WILD-TYPE 165 222 186 172 168 52
'USP36 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S564.  Gene #48: 'USP36 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 270 413 274
USP36 MUTATED 2 3 3
USP36 WILD-TYPE 268 410 271
'USP36 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S565.  Gene #48: 'USP36 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 152 174 390 125 116
USP36 MUTATED 1 1 3 3 0
USP36 WILD-TYPE 151 173 387 122 116
'USP36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S566.  Gene #48: 'USP36 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

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nPatients CLUS_1 CLUS_2 CLUS_3
ALL 248 217 187