name	nmut	n_coding	n_flank	n_coding_nonsilent	fracflank	callscheme	callscheme_name	N_tot	nsil_tot	nnon_tot	rate_sil	rate_non
TCGA-A1-A0SB-01A-11D-A142-09	17	17	0	15	0	1	exome+100bp flanks	34834024	2	12	5.741513e-08	3.444908e-07
TCGA-A1-A0SD-01A-11D-A10Y-09	27	27	0	25	0	1	exome+100bp flanks	34834024	2	22	5.741513e-08	6.315664e-07
TCGA-A1-A0SE-01A-11D-A099-09	27	27	0	18	0	1	exome+100bp flanks	34834024	8	17	2.296605e-07	4.880286e-07
TCGA-A1-A0SF-01A-11D-A142-09	38	37	1	31	2.631579e-02	1	exome+100bp flanks	34834024	5	28	1.435378e-07	8.038118e-07
TCGA-A1-A0SG-01A-11D-A142-09	32	32	0	26	0	1	exome+100bp flanks	34834024	5	25	1.435378e-07	7.176891e-07
TCGA-A1-A0SH-01A-11D-A099-09	94	90	4	74	4.255319e-02	1	exome+100bp flanks	34834024	16	67	4.593210e-07	1.923407e-06
TCGA-A1-A0SI-01A-11D-A142-09	194	190	4	145	2.061856e-02	0	coding only	34834024	43	140	1.234425e-06	4.019059e-06
TCGA-A1-A0SJ-01A-11D-A099-09	31	31	0	27	0	1	exome+100bp flanks	34834024	3	24	8.612269e-08	6.889816e-07
TCGA-A1-A0SK-01A-12D-A099-09	161	141	20	95	1.242236e-01	1	exome+100bp flanks	34834024	29	73	8.325194e-07	2.095652e-06
TCGA-A1-A0SM-01A-11D-A099-09	32	29	3	23	9.375000e-02	1	exome+100bp flanks	34834024	6	23	1.722454e-07	6.602740e-07
TCGA-A1-A0SN-01A-11D-A142-09	50	50	0	40	0	0	coding only	34834024	10	36	2.870756e-07	1.033472e-06
TCGA-A1-A0SP-01A-11D-A099-09	44	42	2	33	4.545455e-02	1	exome+100bp flanks	34834024	7	29	2.009530e-07	8.325194e-07
TCGA-A1-A0SQ-01A-21D-A142-09	26	26	0	20	0	1	exome+100bp flanks	34834024	6	20	1.722454e-07	5.741513e-07
TCGA-A2-A04N-01A-11D-A10Y-09	41	41	0	34	0	1	exome+100bp flanks	34834024	6	30	1.722454e-07	8.612269e-07
TCGA-A2-A04P-01A-31D-A128-09	113	110	3	88	2.654867e-02	0	coding only	34834024	20	82	5.741513e-07	2.354020e-06
TCGA-A2-A04Q-01A-21W-A050-09	12	12	0	8	0	1	exome+100bp flanks	34834024	4	7	1.148303e-07	2.009530e-07
TCGA-A2-A04R-01A-41D-A117-09	81	80	1	65	1.234568e-02	0	coding only	34834024	15	64	4.306135e-07	1.837284e-06
TCGA-A2-A04T-01A-21W-A050-09	93	87	6	70	6.451613e-02	1	exome+100bp flanks	34834024	17	67	4.880286e-07	1.923407e-06
TCGA-A2-A04U-01A-11D-A10Y-09	55	55	0	46	0	0	coding only	34834024	9	44	2.583681e-07	1.263133e-06
TCGA-A2-A04V-01A-21W-A050-09	34	32	2	27	5.882353e-02	1	exome+100bp flanks	34834024	5	24	1.435378e-07	6.889816e-07
TCGA-A2-A04W-01A-31D-A10Y-09	108	106	2	84	1.851852e-02	0	coding only	34834024	19	82	5.454437e-07	2.354020e-06
TCGA-A2-A04X-01A-21W-A050-09	30	29	1	21	3.333333e-02	1	exome+100bp flanks	34834024	8	21	2.296605e-07	6.028589e-07
TCGA-A2-A04Y-01A-21W-A050-09	47	46	1	43	2.127660e-02	1	exome+100bp flanks	34834024	3	40	8.612269e-08	1.148303e-06
TCGA-A2-A0CK-01A-11D-A228-09	26	23	3	14	1.153846e-01	1	exome+100bp flanks	34834024	9	14	2.583681e-07	4.019059e-07
TCGA-A2-A0CL-01A-11D-A10Y-09	23	20	3	16	1.304348e-01	1	exome+100bp flanks	34834024	4	15	1.148303e-07	4.306135e-07
TCGA-A2-A0CM-01A-31W-A050-09	54	53	1	46	1.851852e-02	0	coding only	34834024	7	42	2.009530e-07	1.205718e-06
TCGA-A2-A0CO-01A-13D-A228-09	37	30	7	21	1.891892e-01	1	exome+100bp flanks	34834024	9	19	2.583681e-07	5.454437e-07
TCGA-A2-A0CP-01A-11W-A050-09	82	80	2	76	2.439024e-02	0	coding only	34834024	3	69	8.612269e-08	1.980822e-06
TCGA-A2-A0CQ-01A-21W-A050-09	37	36	1	26	2.702703e-02	1	exome+100bp flanks	34834024	8	23	2.296605e-07	6.602740e-07
TCGA-A2-A0CR-01A-11D-A228-09	120	112	8	91	6.666667e-02	1	exome+100bp flanks	34834024	21	85	6.028589e-07	2.440143e-06
TCGA-A2-A0CS-01A-11D-A10Y-09	34	33	1	26	2.941176e-02	1	exome+100bp flanks	34834024	7	26	2.009530e-07	7.463967e-07
TCGA-A2-A0CT-01A-31W-A071-09	77	77	0	59	0	0	coding only	34834024	17	57	4.880286e-07	1.636331e-06
TCGA-A2-A0CU-01A-12W-A050-09	40	40	0	35	0	1	exome+100bp flanks	34834024	5	31	1.435378e-07	8.899345e-07
TCGA-A2-A0CV-01A-31D-A10Y-09	22	22	0	20	0	1	exome+100bp flanks	34834024	2	19	5.741513e-08	5.454437e-07
TCGA-A2-A0CW-01A-21D-A10Y-09	60	59	1	50	1.666667e-02	0	coding only	34834024	8	45	2.296605e-07	1.291840e-06
TCGA-A2-A0CX-01A-21W-A019-09	203	199	4	155	1.970443e-02	0	coding only	34834024	44	147	1.263133e-06	4.220012e-06
TCGA-A2-A0CZ-01A-11W-A050-09	16	16	0	14	0	1	exome+100bp flanks	34834024	2	12	5.741513e-08	3.444908e-07
TCGA-A2-A0D0-01A-11W-A019-09	66	65	1	52	1.515152e-02	0	coding only	34834024	13	50	3.731983e-07	1.435378e-06
TCGA-A2-A0D1-01A-11W-A050-09	75	73	2	57	2.666667e-02	0	coding only	34834024	15	54	4.306135e-07	1.550208e-06
TCGA-A2-A0D2-01A-21W-A050-09	80	80	0	67	0	0	coding only	34834024	13	62	3.731983e-07	1.779869e-06
TCGA-A2-A0D3-01A-11D-A10Y-09	27	26	1	19	3.703704e-02	1	exome+100bp flanks	34834024	7	19	2.009530e-07	5.454437e-07
TCGA-A2-A0D4-01A-11W-A019-09	29	29	0	25	0	1	exome+100bp flanks	34834024	4	25	1.148303e-07	7.176891e-07
TCGA-A2-A0EM-01A-11W-A050-09	25	25	0	25	0	1	exome+100bp flanks	34834024	0	23	0	6.602740e-07
TCGA-A2-A0EN-01A-13D-A099-09	36	32	4	26	1.111111e-01	1	exome+100bp flanks	34834024	5	24	1.435378e-07	6.889816e-07
TCGA-A2-A0EO-01A-11W-A050-09	30	29	1	23	3.333333e-02	1	exome+100bp flanks	34834024	6	22	1.722454e-07	6.315664e-07
TCGA-A2-A0EP-01A-52D-A22X-09	9	3	6	3	6.666667e-01	2	all capture (no interval list)	65505363	0	3	0	4.579778e-08
TCGA-A2-A0EQ-01A-11W-A050-09	82	81	1	66	1.219512e-02	0	coding only	34834024	15	62	4.306135e-07	1.779869e-06
TCGA-A2-A0ER-01A-21W-A050-09	28	27	1	22	3.571429e-02	1	exome+100bp flanks	34834024	5	22	1.435378e-07	6.315664e-07
TCGA-A2-A0ES-01A-11D-A10Y-09	5	5	0	4	0	1	exome+100bp flanks	34834024	1	3	2.870756e-08	8.612269e-08
TCGA-A2-A0ET-01A-31D-A045-09	32	30	2	24	6.250000e-02	1	exome+100bp flanks	34834024	6	21	1.722454e-07	6.028589e-07
TCGA-A2-A0EU-01A-22W-A071-09	40	40	0	33	0	1	exome+100bp flanks	34834024	7	32	2.009530e-07	9.186421e-07
TCGA-A2-A0EV-01A-11W-A050-09	59	59	0	52	0	0	coding only	34834024	7	50	2.009530e-07	1.435378e-06
TCGA-A2-A0EW-01A-21D-A10Y-09	14	14	0	11	0	1	exome+100bp flanks	34834024	3	10	8.612269e-08	2.870756e-07
TCGA-A2-A0EX-01A-21W-A050-09	28	28	0	25	0	1	exome+100bp flanks	34834024	3	24	8.612269e-08	6.889816e-07
TCGA-A2-A0EY-01A-11W-A050-09	210	208	2	154	9.523810e-03	0	coding only	34834024	53	148	1.521501e-06	4.248720e-06
TCGA-A2-A0ST-01A-12D-A099-09	8	7	1	4	1.250000e-01	1	exome+100bp flanks	34834024	3	4	8.612269e-08	1.148303e-07
TCGA-A2-A0SU-01A-11D-A099-09	23	23	0	18	0	1	exome+100bp flanks	34834024	5	18	1.435378e-07	5.167362e-07
TCGA-A2-A0SV-01A-11D-A099-09	35	35	0	25	0	1	exome+100bp flanks	34834024	10	25	2.870756e-07	7.176891e-07
TCGA-A2-A0SW-01A-11D-A099-09	54	53	1	42	1.851852e-02	0	coding only	34834024	10	37	2.870756e-07	1.062180e-06
TCGA-A2-A0SX-01A-12D-A099-09	24	24	0	19	0	1	exome+100bp flanks	34834024	5	18	1.435378e-07	5.167362e-07
TCGA-A2-A0SY-01A-31D-A099-09	131	129	2	98	1.526718e-02	0	coding only	34834024	26	88	7.463967e-07	2.526266e-06
TCGA-A2-A0T0-01A-22D-A099-09	174	171	3	138	1.724138e-02	0	coding only	34834024	29	129	8.325194e-07	3.703276e-06
TCGA-A2-A0T1-01A-21D-A099-09	16	16	0	11	0	1	exome+100bp flanks	34834024	5	11	1.435378e-07	3.157832e-07
TCGA-A2-A0T2-01A-11W-A097-09	34	33	1	25	2.941176e-02	1	exome+100bp flanks	34834024	7	24	2.009530e-07	6.889816e-07
TCGA-A2-A0T3-01A-21D-A10Y-09	36	35	1	26	2.777778e-02	1	exome+100bp flanks	34834024	9	23	2.583681e-07	6.602740e-07
TCGA-A2-A0T4-01A-31D-A099-09	32	32	0	26	0	1	exome+100bp flanks	34834024	6	25	1.722454e-07	7.176891e-07
TCGA-A2-A0T5-01A-21D-A099-09	1556	1460	96	1143	6.169666e-02	1	exome+100bp flanks	34834024	298	1072	8.554854e-06	3.077451e-05
TCGA-A2-A0T6-01A-11D-A099-09	120	116	4	95	3.333333e-02	1	exome+100bp flanks	34834024	19	86	5.454437e-07	2.468851e-06
TCGA-A2-A0T7-01A-21D-A099-09	23	23	0	18	0	1	exome+100bp flanks	34834024	4	16	1.148303e-07	4.593210e-07
TCGA-A2-A0YC-01A-11D-A117-09	18	18	0	16	0	1	exome+100bp flanks	34834024	2	15	5.741513e-08	4.306135e-07
TCGA-A2-A0YD-01A-11D-A10G-09	64	62	2	44	3.125000e-02	1	exome+100bp flanks	34834024	18	42	5.167362e-07	1.205718e-06
TCGA-A2-A0YE-01A-11D-A10G-09	52	45	7	34	1.346154e-01	1	exome+100bp flanks	34834024	9	30	2.583681e-07	8.612269e-07
TCGA-A2-A0YF-01A-21D-A10G-09	28	26	2	16	7.142857e-02	1	exome+100bp flanks	34834024	9	15	2.583681e-07	4.306135e-07
TCGA-A2-A0YG-01A-21D-A10G-09	51	50	1	37	1.960784e-02	0	coding only	34834024	10	34	2.870756e-07	9.760572e-07
TCGA-A2-A0YH-01A-11D-A10G-09	60	60	0	50	0	0	coding only	34834024	10	48	2.870756e-07	1.377963e-06
TCGA-A2-A0YI-01A-31D-A10M-09	14	14	0	9	0	1	exome+100bp flanks	34834024	5	9	1.435378e-07	2.583681e-07
TCGA-A2-A0YJ-01A-11D-A10G-09	54	54	0	46	0	0	coding only	34834024	7	45	2.009530e-07	1.291840e-06
TCGA-A2-A0YK-01A-22D-A117-09	195	192	3	141	1.538462e-02	0	coding only	34834024	51	131	1.464086e-06	3.760691e-06
TCGA-A2-A0YL-01A-21D-A10G-09	13	13	0	8	0	1	exome+100bp flanks	34834024	5	8	1.435378e-07	2.296605e-07
TCGA-A2-A0YM-01A-11D-A10G-09	71	71	0	58	0	0	coding only	34834024	13	55	3.731983e-07	1.578916e-06
TCGA-A2-A0YT-01A-11D-A10G-09	53	50	3	43	5.660377e-02	1	exome+100bp flanks	34834024	7	41	2.009530e-07	1.177010e-06
TCGA-A2-A1FV-01A-11D-A13L-09	40	38	2	31	5.000000e-02	1	exome+100bp flanks	34834024	6	31	1.722454e-07	8.899345e-07
TCGA-A2-A1FW-01A-11D-A13L-09	66	66	0	43	0	0	coding only	34834024	21	43	6.028589e-07	1.234425e-06
TCGA-A2-A1FX-01A-11D-A13L-09	20	20	0	17	0	1	exome+100bp flanks	34834024	3	17	8.612269e-08	4.880286e-07
TCGA-A2-A1FZ-01A-51D-A17G-09	31	30	1	25	3.225806e-02	1	exome+100bp flanks	34834024	4	23	1.148303e-07	6.602740e-07
TCGA-A2-A1G0-01A-11D-A13L-09	22	21	1	20	4.545455e-02	1	exome+100bp flanks	34834024	1	19	2.870756e-08	5.454437e-07
TCGA-A2-A1G1-01A-21D-A13L-09	30	29	1	21	3.333333e-02	1	exome+100bp flanks	34834024	8	20	2.296605e-07	5.741513e-07
TCGA-A2-A1G4-01A-11D-A13L-09	35	35	0	26	0	1	exome+100bp flanks	34834024	9	24	2.583681e-07	6.889816e-07
TCGA-A2-A1G6-01A-11D-A13L-09	5	4	1	4	2.000000e-01	1	exome+100bp flanks	34834024	0	4	0	1.148303e-07
TCGA-A2-A259-01A-11D-A16D-09	14	13	1	11	7.142857e-02	1	exome+100bp flanks	34834024	2	10	5.741513e-08	2.870756e-07
TCGA-A2-A25A-01A-12D-A16D-09	103	99	4	82	3.883495e-02	1	exome+100bp flanks	34834024	16	81	4.593210e-07	2.325313e-06
TCGA-A2-A25B-01A-11D-A167-09	87	83	4	68	4.597701e-02	1	exome+100bp flanks	34834024	15	64	4.306135e-07	1.837284e-06
TCGA-A2-A25C-01A-11D-A167-09	24	24	0	20	0	1	exome+100bp flanks	34834024	4	19	1.148303e-07	5.454437e-07
TCGA-A2-A25D-01A-12D-A16D-09	55	55	0	40	0	0	coding only	34834024	12	36	3.444908e-07	1.033472e-06
TCGA-A2-A25E-01A-11D-A167-09	55	54	1	46	1.818182e-02	0	coding only	34834024	8	44	2.296605e-07	1.263133e-06
TCGA-A2-A25F-01A-11D-A167-09	3	3	0	0	0	1	exome+100bp flanks	34834024	3	0	8.612269e-08	0
TCGA-A2-A3KC-01A-11D-A20S-09	41	32	9	26	2.195122e-01	1	exome+100bp flanks	34834024	5	21	1.435378e-07	6.028589e-07
TCGA-A2-A3KD-01A-12D-A20S-09	18	11	7	7	3.888889e-01	2	all capture (no interval list)	65505363	3	6	4.579778e-08	9.159555e-08
TCGA-A2-A3XS-01A-11D-A22X-09	34	27	7	22	2.058824e-01	1	exome+100bp flanks	34834024	4	22	1.148303e-07	6.315664e-07
TCGA-A2-A3XT-01A-11D-A22X-09	103	87	16	73	1.553398e-01	1	exome+100bp flanks	34834024	14	66	4.019059e-07	1.894699e-06
TCGA-A2-A3XU-01A-12D-A22X-09	31	25	6	20	1.935484e-01	1	exome+100bp flanks	34834024	4	18	1.148303e-07	5.167362e-07
TCGA-A2-A3XV-01A-21D-A23C-09	56	47	9	42	1.607143e-01	1	exome+100bp flanks	34834024	5	41	1.435378e-07	1.177010e-06
TCGA-A2-A3XW-01A-11D-A23C-09	12	6	6	4	5.000000e-01	2	all capture (no interval list)	65505363	2	3	3.053185e-08	4.579778e-08
TCGA-A2-A3XX-01A-21D-A23C-09	41	38	3	32	7.317073e-02	1	exome+100bp flanks	34834024	4	27	1.148303e-07	7.751042e-07
TCGA-A2-A3XY-01A-11D-A23C-09	60	52	8	37	1.333333e-01	1	exome+100bp flanks	34834024	14	33	4.019059e-07	9.473496e-07
TCGA-A2-A3XZ-01A-42D-A23C-09	52	42	10	33	1.923077e-01	1	exome+100bp flanks	34834024	9	32	2.583681e-07	9.186421e-07
TCGA-A2-A3Y0-01A-11D-A23C-09	199	177	22	145	1.105528e-01	1	exome+100bp flanks	34834024	31	138	8.899345e-07	3.961644e-06
TCGA-A2-A4RW-01A-21D-A25Q-09	126	117	9	94	7.142857e-02	1	exome+100bp flanks	34834024	21	87	6.028589e-07	2.497558e-06
TCGA-A2-A4RX-01A-11D-A25Q-09	22	17	5	13	2.272727e-01	1	exome+100bp flanks	34834024	4	12	1.148303e-07	3.444908e-07
TCGA-A2-A4RY-01A-31D-A25Q-09	32	16	16	13	5.000000e-01	2	all capture (no interval list)	65505363	2	12	3.053185e-08	1.831911e-07
TCGA-A2-A4S0-01A-21D-A25Q-09	17	10	7	6	4.117647e-01	2	all capture (no interval list)	65505363	4	6	6.106370e-08	9.159555e-08
TCGA-A2-A4S1-01A-21D-A25Q-09	80	67	13	63	1.625000e-01	1	exome+100bp flanks	34834024	4	53	1.148303e-07	1.521501e-06
TCGA-A2-A4S2-01A-12D-A25Q-09	45	41	4	33	8.888889e-02	1	exome+100bp flanks	34834024	7	31	2.009530e-07	8.899345e-07
TCGA-A2-A4S3-01A-21D-A25Q-09	89	79	10	60	1.123596e-01	1	exome+100bp flanks	34834024	19	54	5.454437e-07	1.550208e-06
TCGA-A7-A0CD-01A-11W-A019-09	33	32	1	25	3.030303e-02	1	exome+100bp flanks	34834024	6	22	1.722454e-07	6.315664e-07
TCGA-A7-A0CE-01A-11W-A019-09	114	112	2	96	1.754386e-02	0	coding only	34834024	16	96	4.593210e-07	2.755926e-06
TCGA-A7-A0CG-01A-11W-A019-09	33	31	2	27	6.060606e-02	1	exome+100bp flanks	34834024	4	26	1.148303e-07	7.463967e-07
TCGA-A7-A0CH-01A-21W-A019-09	30	28	2	25	6.666667e-02	1	exome+100bp flanks	34834024	3	25	8.612269e-08	7.176891e-07
TCGA-A7-A0CJ-01A-21W-A019-09	51	49	2	40	3.921569e-02	1	exome+100bp flanks	34834024	9	39	2.583681e-07	1.119595e-06
TCGA-A7-A0D9-01A-31W-A071-09	24	24	0	21	0	1	exome+100bp flanks	34834024	3	20	8.612269e-08	5.741513e-07
TCGA-A7-A0DA-01A-31D-A10Y-09	131	128	3	111	2.290076e-02	0	coding only	34834024	17	103	4.880286e-07	2.956879e-06
TCGA-A7-A0DB-01A-11D-A272-09	42	38	4	27	9.523810e-02	1	exome+100bp flanks	34834024	10	25	2.870756e-07	7.176891e-07
TCGA-A7-A0DB-01A-11W-A019-09	50	48	2	38	4.000000e-02	1	exome+100bp flanks	34834024	9	37	2.583681e-07	1.062180e-06
TCGA-A7-A13D-01A-13D-A12Q-09	103	101	2	82	1.941748e-02	0	coding only	34834024	16	75	4.593210e-07	2.153067e-06
TCGA-A7-A13D-01A-13D-A272-09	114	101	13	79	1.140351e-01	1	exome+100bp flanks	34834024	19	70	5.454437e-07	2.009530e-06
TCGA-A7-A13E-01A-11D-A12Q-09	137	132	5	102	3.649635e-02	1	exome+100bp flanks	34834024	26	96	7.463967e-07	2.755926e-06
TCGA-A7-A13E-01A-11D-A272-09	72	63	9	49	1.250000e-01	1	exome+100bp flanks	34834024	13	46	3.731983e-07	1.320548e-06
TCGA-A7-A13F-01A-11D-A12Q-09	34	33	1	31	2.941176e-02	1	exome+100bp flanks	34834024	2	29	5.741513e-08	8.325194e-07
TCGA-A7-A13G-01A-11D-A13L-09	26	25	1	17	3.846154e-02	1	exome+100bp flanks	34834024	6	16	1.722454e-07	4.593210e-07
TCGA-A7-A13H-01A-11D-A228-09	26	23	3	22	1.153846e-01	1	exome+100bp flanks	34834024	1	19	2.870756e-08	5.454437e-07
TCGA-A7-A26E-01A-11D-A167-09	40	39	1	29	2.500000e-02	1	exome+100bp flanks	34834024	9	28	2.583681e-07	8.038118e-07
TCGA-A7-A26E-01A-11D-A272-09	50	43	7	34	1.400000e-01	1	exome+100bp flanks	34834024	8	33	2.296605e-07	9.473496e-07
TCGA-A7-A26E-01B-06D-A272-09	284	259	25	211	8.802817e-02	1	exome+100bp flanks	34834024	43	203	1.234425e-06	5.827636e-06
TCGA-A7-A26F-01A-21D-A167-09	34	33	1	26	2.941176e-02	1	exome+100bp flanks	34834024	7	26	2.009530e-07	7.463967e-07
TCGA-A7-A26F-01B-04D-A22N-09	66	63	3	56	4.545455e-02	1	exome+100bp flanks	34834024	7	52	2.009530e-07	1.492793e-06
TCGA-A7-A26G-01A-21D-A167-09	54	52	2	38	3.703704e-02	1	exome+100bp flanks	34834024	14	36	4.019059e-07	1.033472e-06
TCGA-A7-A26H-01A-11D-A167-09	100	98	2	75	2.000000e-02	0	coding only	34834024	22	72	6.315664e-07	2.066945e-06
TCGA-A7-A26I-01A-11D-A167-09	34	33	1	29	2.941176e-02	1	exome+100bp flanks	34834024	4	25	1.148303e-07	7.176891e-07
TCGA-A7-A26I-01B-06D-A22N-09	1	1	0	1	0	1	exome+100bp flanks	34834024	0	1	0	2.870756e-08
TCGA-A7-A26J-01A-11D-A167-09	21	21	0	18	0	1	exome+100bp flanks	34834024	3	17	8.612269e-08	4.880286e-07
TCGA-A7-A26J-01A-11D-A272-09	29	25	4	21	1.379310e-01	1	exome+100bp flanks	34834024	4	20	1.148303e-07	5.741513e-07
TCGA-A7-A26J-01B-02D-A272-09	163	148	15	130	9.202454e-02	1	exome+100bp flanks	34834024	17	121	4.880286e-07	3.473615e-06
TCGA-A7-A2KD-01A-31D-A21Q-09	49	39	10	31	2.040816e-01	1	exome+100bp flanks	34834024	7	31	2.009530e-07	8.899345e-07
TCGA-A7-A3IY-01A-21D-A21Q-09	25	17	8	11	3.200000e-01	2	all capture (no interval list)	65505363	5	11	7.632963e-08	1.679252e-07
TCGA-A7-A3IZ-01A-11D-A20S-09	126	104	22	70	1.746032e-01	1	exome+100bp flanks	34834024	26	63	7.463967e-07	1.808577e-06
TCGA-A7-A3J0-01A-11D-A20S-09	88	52	36	34	4.090909e-01	2	all capture (no interval list)	65505363	17	19	2.595207e-07	2.900526e-07
TCGA-A7-A3J1-01A-11D-A20S-09	33	27	6	20	1.818182e-01	1	exome+100bp flanks	34834024	4	19	1.148303e-07	5.454437e-07
TCGA-A7-A3RF-01A-11D-A228-09	71	65	6	47	8.450704e-02	1	exome+100bp flanks	34834024	18	43	5.167362e-07	1.234425e-06
TCGA-A7-A425-01A-11D-A243-09	46	39	7	34	1.521739e-01	1	exome+100bp flanks	34834024	3	29	8.612269e-08	8.325194e-07
TCGA-A7-A426-01A-22D-A243-09	46	36	10	29	2.173913e-01	1	exome+100bp flanks	34834024	6	28	1.722454e-07	8.038118e-07
TCGA-A7-A4SA-01A-11D-A25Q-09	93	80	13	59	1.397849e-01	1	exome+100bp flanks	34834024	19	55	5.454437e-07	1.578916e-06
TCGA-A7-A4SB-01A-21D-A25Q-09	42	35	7	31	1.666667e-01	1	exome+100bp flanks	34834024	4	27	1.148303e-07	7.751042e-07
TCGA-A7-A4SC-01A-12D-A25Q-09	46	41	5	33	1.086957e-01	1	exome+100bp flanks	34834024	7	30	2.009530e-07	8.612269e-07
TCGA-A7-A4SD-01A-11D-A25Q-09	60	50	10	39	1.666667e-01	1	exome+100bp flanks	34834024	11	33	3.157832e-07	9.473496e-07
TCGA-A7-A4SE-01A-11D-A25Q-09	114	96	18	79	1.578947e-01	1	exome+100bp flanks	34834024	15	70	4.306135e-07	2.009530e-06
TCGA-A7-A4SF-01A-11D-A25Q-09	88	75	13	52	1.477273e-01	1	exome+100bp flanks	34834024	22	51	6.315664e-07	1.464086e-06
TCGA-A7-A56D-01A-11D-A27P-09	150	134	16	95	1.066667e-01	1	exome+100bp flanks	34834024	32	86	9.186421e-07	2.468851e-06
TCGA-A7-A5ZV-01A-11D-A28B-09	216	186	30	145	1.388889e-01	1	exome+100bp flanks	34834024	41	133	1.177010e-06	3.818106e-06
TCGA-A7-A5ZW-01A-12D-A29N-09	30	27	3	23	1.000000e-01	1	exome+100bp flanks	34834024	4	17	1.148303e-07	4.880286e-07
TCGA-A7-A5ZX-01A-12D-A29N-09	31	27	4	25	1.290323e-01	1	exome+100bp flanks	34834024	2	24	5.741513e-08	6.889816e-07
TCGA-A8-A06N-01A-11W-A019-09	32	32	0	24	0	1	exome+100bp flanks	34834024	7	23	2.009530e-07	6.602740e-07
TCGA-A8-A06O-01A-11W-A019-09	63	60	3	53	4.761905e-02	1	exome+100bp flanks	34834024	7	50	2.009530e-07	1.435378e-06
TCGA-A8-A06P-01A-11W-A019-09	42	42	0	38	0	1	exome+100bp flanks	34834024	4	36	1.148303e-07	1.033472e-06
TCGA-A8-A06Q-01A-11W-A050-09	216	215	1	181	4.629630e-03	0	coding only	34834024	32	167	9.186421e-07	4.794163e-06
TCGA-A8-A06R-01A-11D-A015-09	56	55	1	45	1.785714e-02	0	coding only	34834024	10	44	2.870756e-07	1.263133e-06
TCGA-A8-A06T-01A-11W-A019-09	27	26	1	23	3.703704e-02	1	exome+100bp flanks	34834024	3	22	8.612269e-08	6.315664e-07
TCGA-A8-A06U-01A-11W-A019-09	57	57	0	45	0	0	coding only	34834024	12	42	3.444908e-07	1.205718e-06
TCGA-A8-A06X-01A-21W-A019-09	192	190	2	149	1.041667e-02	0	coding only	34834024	39	146	1.119595e-06	4.191304e-06
TCGA-A8-A06Y-01A-21W-A019-09	34	32	2	27	5.882353e-02	1	exome+100bp flanks	34834024	5	25	1.435378e-07	7.176891e-07
TCGA-A8-A06Z-01A-11W-A019-09	60	57	3	46	5.000000e-02	1	exome+100bp flanks	34834024	11	46	3.157832e-07	1.320548e-06
TCGA-A8-A075-01A-11D-A099-09	74	71	3	53	4.054054e-02	1	exome+100bp flanks	34834024	17	52	4.880286e-07	1.492793e-06
TCGA-A8-A076-01A-21W-A019-09	55	52	3	45	5.454545e-02	1	exome+100bp flanks	34834024	6	42	1.722454e-07	1.205718e-06
TCGA-A8-A079-01A-21W-A019-09	51	49	2	38	3.921569e-02	1	exome+100bp flanks	34834024	9	36	2.583681e-07	1.033472e-06
TCGA-A8-A07B-01A-11W-A019-09	67	65	2	50	2.985075e-02	0	coding only	34834024	14	46	4.019059e-07	1.320548e-06
TCGA-A8-A07C-01A-11D-A045-09	138	137	1	115	7.246377e-03	0	coding only	34834024	22	108	6.315664e-07	3.100417e-06
TCGA-A8-A07E-01A-11W-A050-09	74	73	1	67	1.351351e-02	0	coding only	34834024	4	64	1.148303e-07	1.837284e-06
TCGA-A8-A07F-01A-11W-A019-09	30	29	1	23	3.333333e-02	1	exome+100bp flanks	34834024	6	20	1.722454e-07	5.741513e-07
TCGA-A8-A07G-01A-11W-A050-09	48	48	0	42	0	1	exome+100bp flanks	34834024	6	42	1.722454e-07	1.205718e-06
TCGA-A8-A07I-01A-11W-A019-09	40	38	2	30	5.000000e-02	1	exome+100bp flanks	34834024	7	30	2.009530e-07	8.612269e-07
TCGA-A8-A07J-01A-11W-A019-09	42	40	2	30	4.761905e-02	1	exome+100bp flanks	34834024	10	30	2.870756e-07	8.612269e-07
TCGA-A8-A07L-01A-11W-A019-09	94	91	3	73	3.191489e-02	1	exome+100bp flanks	34834024	17	71	4.880286e-07	2.038237e-06
TCGA-A8-A07O-01A-11W-A019-09	41	41	0	35	0	1	exome+100bp flanks	34834024	6	34	1.722454e-07	9.760572e-07
TCGA-A8-A07P-01A-11W-A019-09	52	50	2	40	3.846154e-02	1	exome+100bp flanks	34834024	10	37	2.870756e-07	1.062180e-06
TCGA-A8-A07R-01A-21W-A050-09	472	439	33	364	6.991525e-02	1	exome+100bp flanks	34834024	71	343	2.038237e-06	9.846695e-06
TCGA-A8-A07U-01A-11W-A050-09	38	38	0	30	0	1	exome+100bp flanks	34834024	8	30	2.296605e-07	8.612269e-07
TCGA-A8-A07W-01A-11W-A019-09	80	78	2	60	2.500000e-02	0	coding only	34834024	18	55	5.167362e-07	1.578916e-06
TCGA-A8-A07Z-01A-11W-A019-09	23	23	0	18	0	1	exome+100bp flanks	34834024	5	18	1.435378e-07	5.167362e-07
TCGA-A8-A081-01A-11W-A019-09	83	80	3	68	3.614458e-02	1	exome+100bp flanks	34834024	12	62	3.444908e-07	1.779869e-06
TCGA-A8-A082-01A-11W-A019-09	21	21	0	16	0	1	exome+100bp flanks	34834024	5	16	1.435378e-07	4.593210e-07
TCGA-A8-A083-01A-21W-A019-09	29	27	2	27	6.896552e-02	1	exome+100bp flanks	34834024	0	27	0	7.751042e-07
TCGA-A8-A084-01A-21W-A019-09	66	65	1	56	1.515152e-02	0	coding only	34834024	9	54	2.583681e-07	1.550208e-06
TCGA-A8-A085-01A-11W-A019-09	68	68	0	52	0	0	coding only	34834024	16	51	4.593210e-07	1.464086e-06
TCGA-A8-A086-01A-11W-A019-09	23	23	0	19	0	1	exome+100bp flanks	34834024	4	19	1.148303e-07	5.454437e-07
TCGA-A8-A08A-01A-11W-A019-09	31	31	0	26	0	1	exome+100bp flanks	34834024	5	25	1.435378e-07	7.176891e-07
TCGA-A8-A08B-01A-11W-A019-09	33	31	2	18	6.060606e-02	1	exome+100bp flanks	34834024	12	18	3.444908e-07	5.167362e-07
TCGA-A8-A08C-01A-11W-A019-09	2	2	0	2	0	1	exome+100bp flanks	34834024	0	2	0	5.741513e-08
TCGA-A8-A08F-01A-11W-A019-09	116	112	4	91	3.448276e-02	1	exome+100bp flanks	34834024	20	89	5.741513e-07	2.554973e-06
TCGA-A8-A08G-01A-11W-A019-09	34	34	0	28	0	1	exome+100bp flanks	34834024	6	25	1.722454e-07	7.176891e-07
TCGA-A8-A08H-01A-21W-A019-09	55	52	3	44	5.454545e-02	1	exome+100bp flanks	34834024	8	44	2.296605e-07	1.263133e-06
TCGA-A8-A08I-01A-11W-A019-09	40	39	1	32	2.500000e-02	1	exome+100bp flanks	34834024	7	29	2.009530e-07	8.325194e-07
TCGA-A8-A08J-01A-11W-A019-09	28	28	0	25	0	1	exome+100bp flanks	34834024	2	24	5.741513e-08	6.889816e-07
TCGA-A8-A08L-01A-11W-A019-09	203	201	2	164	9.852217e-03	0	coding only	34834024	36	156	1.033472e-06	4.478380e-06
TCGA-A8-A08O-01A-21W-A071-09	25	24	1	19	4.000000e-02	1	exome+100bp flanks	34834024	5	19	1.435378e-07	5.454437e-07
TCGA-A8-A08P-01A-11W-A019-09	38	38	0	32	0	1	exome+100bp flanks	34834024	6	31	1.722454e-07	8.899345e-07
TCGA-A8-A08R-01A-11W-A050-09	173	169	4	133	2.312139e-02	0	coding only	34834024	35	123	1.004765e-06	3.531030e-06
TCGA-A8-A08S-01A-11W-A050-09	52	51	1	43	1.923077e-02	0	coding only	34834024	8	40	2.296605e-07	1.148303e-06
TCGA-A8-A08T-01A-21W-A019-09	50	50	0	40	0	0	coding only	34834024	10	36	2.870756e-07	1.033472e-06
TCGA-A8-A08X-01A-21W-A019-09	17	17	0	13	0	1	exome+100bp flanks	34834024	4	11	1.148303e-07	3.157832e-07
TCGA-A8-A08Z-01A-21W-A019-09	30	30	0	23	0	1	exome+100bp flanks	34834024	7	23	2.009530e-07	6.602740e-07
TCGA-A8-A090-01A-11W-A019-09	35	35	0	28	0	1	exome+100bp flanks	34834024	7	26	2.009530e-07	7.463967e-07
TCGA-A8-A091-01A-11W-A019-09	25	24	1	17	4.000000e-02	1	exome+100bp flanks	34834024	7	17	2.009530e-07	4.880286e-07
TCGA-A8-A092-01A-11W-A019-09	85	80	5	68	5.882353e-02	1	exome+100bp flanks	34834024	12	68	3.444908e-07	1.952114e-06
TCGA-A8-A093-01A-11W-A019-09	101	100	1	79	9.900990e-03	0	coding only	34834024	20	77	5.741513e-07	2.210482e-06
TCGA-A8-A094-01A-11W-A019-09	177	176	1	142	5.649718e-03	0	coding only	34834024	31	136	8.899345e-07	3.904229e-06
TCGA-A8-A095-01A-11W-A019-09	125	120	5	92	4.000000e-02	1	exome+100bp flanks	34834024	26	88	7.463967e-07	2.526266e-06
TCGA-A8-A096-01A-11W-A019-09	28	27	1	25	3.571429e-02	1	exome+100bp flanks	34834024	2	23	5.741513e-08	6.602740e-07
TCGA-A8-A097-01A-11W-A050-09	104	104	0	81	0	0	coding only	34834024	22	75	6.315664e-07	2.153067e-06
TCGA-A8-A099-01A-11W-A019-09	22	21	1	16	4.545455e-02	1	exome+100bp flanks	34834024	4	14	1.148303e-07	4.019059e-07
TCGA-A8-A09A-01A-11W-A019-09	106	102	4	83	3.773585e-02	1	exome+100bp flanks	34834024	18	82	5.167362e-07	2.354020e-06
TCGA-A8-A09B-01A-11W-A019-09	40	38	2	30	5.000000e-02	1	exome+100bp flanks	34834024	8	27	2.296605e-07	7.751042e-07
TCGA-A8-A09C-01A-11W-A019-09	30	30	0	20	0	1	exome+100bp flanks	34834024	10	20	2.870756e-07	5.741513e-07
TCGA-A8-A09D-01A-11W-A019-09	47	46	1	32	2.127660e-02	1	exome+100bp flanks	34834024	12	30	3.444908e-07	8.612269e-07
TCGA-A8-A09E-01A-11W-A019-09	45	45	0	41	0	1	exome+100bp flanks	34834024	4	40	1.148303e-07	1.148303e-06
TCGA-A8-A09G-01A-21W-A019-09	243	238	5	191	2.057613e-02	0	coding only	34834024	44	185	1.263133e-06	5.310899e-06
TCGA-A8-A09I-01A-22W-A050-09	128	126	2	96	1.562500e-02	0	coding only	34834024	28	92	8.038118e-07	2.641096e-06
TCGA-A8-A09K-01A-11W-A019-09	35	35	0	29	0	1	exome+100bp flanks	34834024	6	29	1.722454e-07	8.325194e-07
TCGA-A8-A09M-01A-11W-A019-09	92	89	3	68	3.260870e-02	1	exome+100bp flanks	34834024	20	64	5.741513e-07	1.837284e-06
TCGA-A8-A09N-01A-11W-A019-09	77	75	2	53	2.597403e-02	0	coding only	34834024	19	51	5.454437e-07	1.464086e-06
TCGA-A8-A09Q-01A-11W-A019-09	98	96	2	75	2.040816e-02	0	coding only	34834024	21	73	6.028589e-07	2.095652e-06
TCGA-A8-A09R-01A-11W-A019-09	50	49	1	42	2.000000e-02	0	coding only	34834024	7	42	2.009530e-07	1.205718e-06
TCGA-A8-A09T-01A-11W-A019-09	24	24	0	20	0	1	exome+100bp flanks	34834024	2	20	5.741513e-08	5.741513e-07
TCGA-A8-A09V-01A-11D-A045-09	24	24	0	20	0	1	exome+100bp flanks	34834024	4	19	1.148303e-07	5.454437e-07
TCGA-A8-A09W-01A-11W-A019-09	81	79	2	65	2.469136e-02	0	coding only	34834024	14	65	4.019059e-07	1.865992e-06
TCGA-A8-A09X-01A-11W-A019-09	57	56	1	45	1.754386e-02	0	coding only	34834024	11	44	3.157832e-07	1.263133e-06
TCGA-A8-A09Z-01A-11W-A019-09	1403	1281	122	1032	8.695652e-02	1	exome+100bp flanks	34834024	242	980	6.947231e-06	2.813341e-05
TCGA-A8-A0A1-01A-11W-A019-09	37	36	1	31	2.702703e-02	1	exome+100bp flanks	34834024	5	30	1.435378e-07	8.612269e-07
TCGA-A8-A0A2-01A-11W-A050-09	34	34	0	23	0	1	exome+100bp flanks	34834024	11	21	3.157832e-07	6.028589e-07
TCGA-A8-A0A4-01A-11W-A019-09	35	34	1	27	2.857143e-02	1	exome+100bp flanks	34834024	7	27	2.009530e-07	7.751042e-07
TCGA-A8-A0A6-01A-12W-A071-09	3174	3046	128	2186	4.032766e-02	1	exome+100bp flanks	34834024	818	2084	2.348279e-05	5.982656e-05
TCGA-A8-A0A7-01A-11W-A019-09	90	89	1	71	1.111111e-02	0	coding only	34834024	17	68	4.880286e-07	1.952114e-06
TCGA-A8-A0A9-01A-11W-A019-09	47	45	2	39	4.255319e-02	1	exome+100bp flanks	34834024	6	38	1.722454e-07	1.090887e-06
TCGA-A8-A0AB-01A-11W-A050-09	25	24	1	19	4.000000e-02	1	exome+100bp flanks	34834024	5	19	1.435378e-07	5.454437e-07
TCGA-A8-A0AD-01A-11W-A071-09	28	28	0	18	0	1	exome+100bp flanks	34834024	10	18	2.870756e-07	5.167362e-07
TCGA-AC-A23C-01A-12D-A167-09	97	96	1	78	1.030928e-02	0	coding only	34834024	18	74	5.167362e-07	2.124360e-06
TCGA-AC-A23E-01A-11D-A159-09	18	18	0	15	0	1	exome+100bp flanks	34834024	2	14	5.741513e-08	4.019059e-07
TCGA-AC-A23G-01A-11D-A20S-09	30	29	1	19	3.333333e-02	1	exome+100bp flanks	34834024	10	18	2.870756e-07	5.167362e-07
TCGA-AC-A23H-01A-11D-A159-09	4718	4659	59	3655	1.250530e-02	0	coding only	34834024	955	3440	2.741572e-05	9.875402e-05
TCGA-AC-A2B8-01A-11D-A17D-09	103	97	6	73	5.825243e-02	1	exome+100bp flanks	34834024	23	70	6.602740e-07	2.009530e-06
TCGA-AC-A2BK-01A-11D-A21Q-09	97	80	17	63	1.752577e-01	1	exome+100bp flanks	34834024	16	59	4.593210e-07	1.693746e-06
TCGA-AC-A2BM-01A-11D-A21Q-09	25	22	3	17	1.200000e-01	1	exome+100bp flanks	34834024	4	15	1.148303e-07	4.306135e-07
TCGA-AC-A2FB-01A-11D-A17D-09	17	16	1	14	5.882353e-02	1	exome+100bp flanks	34834024	2	13	5.741513e-08	3.731983e-07
TCGA-AC-A2FE-01A-11D-A19Y-09	35	22	13	19	3.714286e-01	2	all capture (no interval list)	65505363	3	15	4.579778e-08	2.289889e-07
TCGA-AC-A2FF-01A-11D-A17D-09	13	12	1	12	7.692308e-02	1	exome+100bp flanks	34834024	0	12	0	3.444908e-07
TCGA-AC-A2FG-01A-11D-A17D-09	53	49	4	39	7.547170e-02	1	exome+100bp flanks	34834024	9	35	2.583681e-07	1.004765e-06
TCGA-AC-A2FK-01A-12D-A17W-09	1	1	0	1	0	1	exome+100bp flanks	34834024	0	1	0	2.870756e-08
TCGA-AC-A2FM-01A-11D-A19Y-09	59	46	13	33	2.203390e-01	1	exome+100bp flanks	34834024	9	29	2.583681e-07	8.325194e-07
TCGA-AC-A2FO-01A-11D-A17W-09	25	25	0	21	0	1	exome+100bp flanks	34834024	4	21	1.148303e-07	6.028589e-07
TCGA-AC-A2QH-01A-11D-A18P-09	27	27	0	24	0	1	exome+100bp flanks	34834024	3	23	8.612269e-08	6.602740e-07
TCGA-AC-A2QH-01B-04D-A22N-09	60	59	1	56	1.666667e-02	0	coding only	34834024	3	50	8.612269e-08	1.435378e-06
TCGA-AC-A2QI-01A-12D-A19Y-09	92	79	13	59	1.413043e-01	1	exome+100bp flanks	34834024	20	57	5.741513e-07	1.636331e-06
TCGA-AC-A2QJ-01A-12D-A19Y-09	97	52	45	49	4.639175e-01	2	all capture (no interval list)	65505363	2	33	3.053185e-08	5.037755e-07
TCGA-AC-A3BB-01A-21D-A19Y-09	138	94	44	69	3.188406e-01	2	all capture (no interval list)	65505363	19	58	2.900526e-07	8.854237e-07
TCGA-AC-A3EH-01A-22D-A228-09	66	51	15	39	2.272727e-01	1	exome+100bp flanks	34834024	10	36	2.870756e-07	1.033472e-06
TCGA-AC-A3HN-01A-11D-A20S-09	20	17	3	13	1.500000e-01	1	exome+100bp flanks	34834024	4	11	1.148303e-07	3.157832e-07
TCGA-AC-A3OD-01A-11D-A21Q-09	23	21	2	19	8.695652e-02	1	exome+100bp flanks	34834024	2	18	5.741513e-08	5.167362e-07
TCGA-AC-A3OD-01B-06D-A22N-09	127	114	13	96	1.023622e-01	1	exome+100bp flanks	34834024	18	81	5.167362e-07	2.325313e-06
TCGA-AC-A3QP-01A-11D-A22X-09	34	32	2	26	5.882353e-02	1	exome+100bp flanks	34834024	6	24	1.722454e-07	6.889816e-07
TCGA-AC-A3TM-01A-11D-A228-09	106	58	48	49	4.528302e-01	2	all capture (no interval list)	65505363	7	36	1.068615e-07	5.495733e-07
TCGA-AC-A3TN-01A-11D-A228-09	222	122	100	93	4.504505e-01	2	all capture (no interval list)	65505363	19	59	2.900526e-07	9.006896e-07
TCGA-AC-A3W5-01A-11D-A228-09	158	132	26	104	1.645570e-01	1	exome+100bp flanks	34834024	27	95	7.751042e-07	2.727219e-06
TCGA-AC-A3W6-01A-12D-A228-09	271	203	68	160	2.509225e-01	1	exome+100bp flanks	34834024	40	146	1.148303e-06	4.191304e-06
TCGA-AC-A3W7-01A-11D-A228-09	89	80	9	57	1.011236e-01	1	exome+100bp flanks	34834024	20	55	5.741513e-07	1.578916e-06
TCGA-AC-A3YI-01A-21D-A23C-09	20	15	5	12	2.500000e-01	1	exome+100bp flanks	34834024	3	12	8.612269e-08	3.444908e-07
TCGA-AC-A3YJ-01A-11D-A22X-09	35	31	4	24	1.142857e-01	1	exome+100bp flanks	34834024	6	23	1.722454e-07	6.602740e-07
TCGA-AC-A5EH-01A-11D-A28B-09	159	143	16	112	1.006289e-01	1	exome+100bp flanks	34834024	30	100	8.612269e-07	2.870756e-06
TCGA-AC-A5EI-01A-11D-A27P-09	36	32	4	26	1.111111e-01	1	exome+100bp flanks	34834024	5	24	1.435378e-07	6.889816e-07
TCGA-AC-A5XS-01A-11D-A29N-09	559	511	48	388	8.586762e-02	1	exome+100bp flanks	34834024	113	362	3.243955e-06	1.039214e-05
TCGA-AC-A5XU-01A-11D-A28B-09	73	62	11	43	1.506849e-01	1	exome+100bp flanks	34834024	18	38	5.167362e-07	1.090887e-06
TCGA-AC-A62X-01A-11D-A29N-09	68	58	10	47	1.470588e-01	1	exome+100bp flanks	34834024	11	40	3.157832e-07	1.148303e-06
TCGA-AC-A62Y-01A-11D-A29N-09	72	65	7	54	9.722222e-02	1	exome+100bp flanks	34834024	10	48	2.870756e-07	1.377963e-06
TCGA-AN-A03X-01A-21W-A019-09	43	41	2	35	4.651163e-02	1	exome+100bp flanks	34834024	6	35	1.722454e-07	1.004765e-06
TCGA-AN-A03Y-01A-21W-A019-09	29	29	0	22	0	1	exome+100bp flanks	34834024	6	20	1.722454e-07	5.741513e-07
TCGA-AN-A041-01A-11W-A050-09	24	23	1	19	4.166667e-02	1	exome+100bp flanks	34834024	4	19	1.148303e-07	5.454437e-07
TCGA-AN-A046-01A-21W-A050-09	5705	5444	261	4541	4.574934e-02	1	exome+100bp flanks	34834024	858	4252	2.463109e-05	1.220646e-04
TCGA-AN-A049-01A-21W-A019-09	35	35	0	29	0	1	exome+100bp flanks	34834024	6	29	1.722454e-07	8.325194e-07
TCGA-AN-A04A-01A-21W-A050-09	30	28	2	20	6.666667e-02	1	exome+100bp flanks	34834024	7	19	2.009530e-07	5.454437e-07
TCGA-AN-A04C-01A-21W-A050-09	66	65	1	51	1.515152e-02	0	coding only	34834024	14	50	4.019059e-07	1.435378e-06
TCGA-AN-A04D-01A-21W-A050-09	94	93	1	72	1.063830e-02	0	coding only	34834024	21	67	6.028589e-07	1.923407e-06
TCGA-AN-A0AJ-01A-11W-A019-09	78	76	2	58	2.564103e-02	0	coding only	34834024	17	56	4.880286e-07	1.607624e-06
TCGA-AN-A0AK-01A-21W-A019-09	1263	1156	107	911	8.471892e-02	1	exome+100bp flanks	34834024	229	869	6.574032e-06	2.494687e-05
TCGA-AN-A0AL-01A-11W-A019-09	79	76	3	66	3.797468e-02	1	exome+100bp flanks	34834024	9	61	2.583681e-07	1.751161e-06
TCGA-AN-A0AM-01A-11W-A050-09	49	49	0	39	0	1	exome+100bp flanks	34834024	10	36	2.870756e-07	1.033472e-06
TCGA-AN-A0AR-01A-11W-A019-09	115	109	6	90	5.217391e-02	1	exome+100bp flanks	34834024	19	87	5.454437e-07	2.497558e-06
TCGA-AN-A0AS-01A-11W-A019-09	39	39	0	36	0	1	exome+100bp flanks	34834024	3	36	8.612269e-08	1.033472e-06
TCGA-AN-A0AT-01A-11D-A045-09	108	108	0	91	0	0	coding only	34834024	16	86	4.593210e-07	2.468851e-06
TCGA-AN-A0FD-01A-11W-A050-09	40	39	1	32	2.500000e-02	1	exome+100bp flanks	34834024	6	32	1.722454e-07	9.186421e-07
TCGA-AN-A0FF-01A-11W-A050-09	27	24	3	21	1.111111e-01	1	exome+100bp flanks	34834024	3	19	8.612269e-08	5.454437e-07
TCGA-AN-A0FJ-01A-11W-A019-09	85	84	1	71	1.176471e-02	0	coding only	34834024	13	70	3.731983e-07	2.009530e-06
TCGA-AN-A0FK-01A-11W-A050-09	45	45	0	34	0	1	exome+100bp flanks	34834024	11	31	3.157832e-07	8.899345e-07
TCGA-AN-A0FL-01A-11W-A050-09	177	174	3	141	1.694915e-02	0	coding only	34834024	31	134	8.899345e-07	3.846814e-06
TCGA-AN-A0FN-01A-11W-A050-09	32	28	4	26	1.250000e-01	1	exome+100bp flanks	34834024	2	23	5.741513e-08	6.602740e-07
TCGA-AN-A0FS-01A-11W-A050-09	64	64	0	51	0	0	coding only	34834024	12	50	3.444908e-07	1.435378e-06
TCGA-AN-A0FT-01A-11W-A050-09	97	96	1	71	1.030928e-02	0	coding only	34834024	24	64	6.889816e-07	1.837284e-06
TCGA-AN-A0FV-01A-11W-A019-09	83	81	2	59	2.409639e-02	0	coding only	34834024	21	55	6.028589e-07	1.578916e-06
TCGA-AN-A0FW-01A-11W-A050-09	97	93	4	75	4.123711e-02	1	exome+100bp flanks	34834024	15	66	4.306135e-07	1.894699e-06
TCGA-AN-A0FX-01A-11W-A050-09	148	144	4	130	2.702703e-02	0	coding only	34834024	13	122	3.731983e-07	3.502323e-06
TCGA-AN-A0FY-01A-11W-A050-09	51	50	1	46	1.960784e-02	0	coding only	34834024	4	44	1.148303e-07	1.263133e-06
TCGA-AN-A0FZ-01A-11W-A050-09	46	46	0	39	0	1	exome+100bp flanks	34834024	7	38	2.009530e-07	1.090887e-06
TCGA-AN-A0G0-01A-11W-A050-09	39	37	2	34	5.128205e-02	1	exome+100bp flanks	34834024	3	30	8.612269e-08	8.612269e-07
TCGA-AN-A0XL-01A-11D-A10M-09	30	27	3	21	1.000000e-01	1	exome+100bp flanks	34834024	6	20	1.722454e-07	5.741513e-07
TCGA-AN-A0XN-01A-21D-A10G-09	120	120	0	96	0	0	coding only	34834024	21	89	6.028589e-07	2.554973e-06
TCGA-AN-A0XO-01A-11D-A10G-09	27	25	2	20	7.407407e-02	1	exome+100bp flanks	34834024	5	19	1.435378e-07	5.454437e-07
TCGA-AN-A0XP-01A-11D-A117-09	27	26	1	21	3.703704e-02	1	exome+100bp flanks	34834024	5	21	1.435378e-07	6.028589e-07
TCGA-AN-A0XR-01A-11D-A10G-09	34	32	2	27	5.882353e-02	1	exome+100bp flanks	34834024	5	25	1.435378e-07	7.176891e-07
TCGA-AN-A0XS-01A-22D-A10G-09	27	27	0	24	0	1	exome+100bp flanks	34834024	2	23	5.741513e-08	6.602740e-07
TCGA-AN-A0XT-01A-11D-A10G-09	18	16	2	8	1.111111e-01	1	exome+100bp flanks	34834024	7	8	2.009530e-07	2.296605e-07
TCGA-AN-A0XU-01A-11D-A10G-09	97	96	1	80	1.030928e-02	0	coding only	34834024	16	73	4.593210e-07	2.095652e-06
TCGA-AN-A0XV-01A-11D-A10G-09	29	28	1	24	3.448276e-02	1	exome+100bp flanks	34834024	4	24	1.148303e-07	6.889816e-07
TCGA-AN-A0XW-01A-11D-A10G-09	224	218	6	170	2.678571e-02	0	coding only	34834024	44	160	1.263133e-06	4.593210e-06
TCGA-AO-A03L-01A-41W-A071-09	25	24	1	22	4.000000e-02	1	exome+100bp flanks	34834024	2	22	5.741513e-08	6.315664e-07
TCGA-AO-A03M-01B-11D-A10M-09	779	743	36	573	4.621309e-02	1	exome+100bp flanks	34834024	162	533	4.650625e-06	1.530113e-05
TCGA-AO-A03N-01B-11D-A10M-09	101	100	1	74	9.900990e-03	0	coding only	34834024	26	69	7.463967e-07	1.980822e-06
TCGA-AO-A03O-01A-11W-A019-09	62	61	1	54	1.612903e-02	0	coding only	34834024	7	51	2.009530e-07	1.464086e-06
TCGA-AO-A03P-01A-11W-A019-09	49	47	2	37	4.081633e-02	1	exome+100bp flanks	34834024	10	34	2.870756e-07	9.760572e-07
TCGA-AO-A03R-01A-21W-A050-09	43	43	0	31	0	1	exome+100bp flanks	34834024	12	29	3.444908e-07	8.325194e-07
TCGA-AO-A03T-01A-21W-A050-09	92	91	1	76	1.086957e-02	0	coding only	34834024	15	73	4.306135e-07	2.095652e-06
TCGA-AO-A03U-01B-21D-A10M-09	8	8	0	6	0	1	exome+100bp flanks	34834024	1	5	2.870756e-08	1.435378e-07
TCGA-AO-A03V-01A-11D-A10Y-09	52	51	1	44	1.923077e-02	0	coding only	34834024	7	43	2.009530e-07	1.234425e-06
TCGA-AO-A0J2-01A-11W-A050-09	69	66	3	47	4.347826e-02	1	exome+100bp flanks	34834024	19	44	5.454437e-07	1.263133e-06
TCGA-AO-A0J3-01A-11W-A050-09	78	78	0	64	0	0	coding only	34834024	13	60	3.731983e-07	1.722454e-06
TCGA-AO-A0J4-01A-11W-A050-09	85	84	1	67	1.176471e-02	0	coding only	34834024	17	63	4.880286e-07	1.808577e-06
TCGA-AO-A0J5-01A-11W-A050-09	56	55	1	43	1.785714e-02	0	coding only	34834024	12	42	3.444908e-07	1.205718e-06
TCGA-AO-A0J6-01A-11W-A050-09	103	103	0	89	0	0	coding only	34834024	12	81	3.444908e-07	2.325313e-06
TCGA-AO-A0J7-01A-11W-A050-09	22	22	0	20	0	1	exome+100bp flanks	34834024	2	18	5.741513e-08	5.167362e-07
TCGA-AO-A0J8-01A-21D-A045-09	26	23	3	16	1.153846e-01	1	exome+100bp flanks	34834024	7	16	2.009530e-07	4.593210e-07
TCGA-AO-A0J9-01A-11W-A050-09	97	95	2	77	2.061856e-02	0	coding only	34834024	14	73	4.019059e-07	2.095652e-06
TCGA-AO-A0JA-01A-11W-A071-09	30	30	0	23	0	1	exome+100bp flanks	34834024	6	21	1.722454e-07	6.028589e-07
TCGA-AO-A0JB-01A-11W-A071-09	86	85	1	72	1.162791e-02	0	coding only	34834024	11	66	3.157832e-07	1.894699e-06
TCGA-AO-A0JC-01A-11W-A071-09	9	9	0	6	0	1	exome+100bp flanks	34834024	2	4	5.741513e-08	1.148303e-07
TCGA-AO-A0JD-01A-11W-A071-09	105	100	5	85	4.761905e-02	1	exome+100bp flanks	34834024	15	81	4.306135e-07	2.325313e-06
TCGA-AO-A0JE-01A-11W-A071-09	40	40	0	32	0	1	exome+100bp flanks	34834024	8	31	2.296605e-07	8.899345e-07
TCGA-AO-A0JF-01A-11W-A071-09	29	27	2	21	6.896552e-02	1	exome+100bp flanks	34834024	6	18	1.722454e-07	5.167362e-07
TCGA-AO-A0JI-01A-21W-A100-09	15	15	0	13	0	1	exome+100bp flanks	34834024	2	11	5.741513e-08	3.157832e-07
TCGA-AO-A0JJ-01A-11W-A071-09	12	12	0	10	0	1	exome+100bp flanks	34834024	2	10	5.741513e-08	2.870756e-07
TCGA-AO-A0JL-01A-11W-A071-09	63	63	0	49	0	0	coding only	34834024	14	48	4.019059e-07	1.377963e-06
TCGA-AO-A0JM-01A-21W-A071-09	35	33	2	25	5.714286e-02	1	exome+100bp flanks	34834024	8	24	2.296605e-07	6.889816e-07
TCGA-AO-A124-01A-11D-A10M-09	140	137	3	115	2.142857e-02	0	coding only	34834024	22	105	6.315664e-07	3.014294e-06
TCGA-AO-A125-01A-11D-A10M-09	42	40	2	32	4.761905e-02	1	exome+100bp flanks	34834024	8	26	2.296605e-07	7.463967e-07
TCGA-AO-A126-01A-11D-A10M-09	21	21	0	16	0	1	exome+100bp flanks	34834024	5	16	1.435378e-07	4.593210e-07
TCGA-AO-A128-01A-11D-A10M-09	983	941	42	720	4.272635e-02	1	exome+100bp flanks	34834024	206	678	5.913758e-06	1.946373e-05
TCGA-AO-A129-01A-21D-A10M-09	87	87	0	69	0	0	coding only	34834024	18	65	5.167362e-07	1.865992e-06
TCGA-AO-A12A-01A-21D-A10Y-09	15	15	0	11	0	1	exome+100bp flanks	34834024	4	8	1.148303e-07	2.296605e-07
TCGA-AO-A12B-01A-11D-A10M-09	17	16	1	14	5.882353e-02	1	exome+100bp flanks	34834024	1	13	2.870756e-08	3.731983e-07
TCGA-AO-A12D-01A-11D-A10Y-09	36	36	0	31	0	1	exome+100bp flanks	34834024	4	25	1.148303e-07	7.176891e-07
TCGA-AO-A12E-01A-11D-A10M-09	622	548	74	369	1.189711e-01	1	exome+100bp flanks	34834024	140	275	4.019059e-06	7.894580e-06
TCGA-AO-A12F-01A-11D-A10Y-09	32	30	2	28	6.250000e-02	1	exome+100bp flanks	34834024	2	27	5.741513e-08	7.751042e-07
TCGA-AO-A12G-01A-11D-A10M-09	36	34	2	29	5.555556e-02	1	exome+100bp flanks	34834024	4	27	1.148303e-07	7.751042e-07
TCGA-AO-A12H-01A-11D-A10Y-09	21	20	1	16	4.761905e-02	1	exome+100bp flanks	34834024	4	12	1.148303e-07	3.444908e-07
TCGA-AO-A1KO-01A-31D-A188-09	32	31	1	24	3.125000e-02	1	exome+100bp flanks	34834024	7	24	2.009530e-07	6.889816e-07
TCGA-AO-A1KP-01A-11D-A13L-09	21	20	1	14	4.761905e-02	1	exome+100bp flanks	34834024	6	14	1.722454e-07	4.019059e-07
TCGA-AO-A1KR-01A-12D-A142-09	69	68	1	49	1.449275e-02	0	coding only	34834024	18	46	5.167362e-07	1.320548e-06
TCGA-AO-A1KS-01A-11D-A13L-09	42	41	1	30	2.380952e-02	1	exome+100bp flanks	34834024	11	30	3.157832e-07	8.612269e-07
TCGA-AO-A1KT-01A-11D-A13L-09	39	38	1	24	2.564103e-02	1	exome+100bp flanks	34834024	13	23	3.731983e-07	6.602740e-07
TCGA-AQ-A04H-01B-11D-A10M-09	69	69	0	56	0	0	coding only	34834024	11	55	3.157832e-07	1.578916e-06
TCGA-AQ-A04J-01A-02W-A050-09	58	57	1	45	1.724138e-02	0	coding only	34834024	12	43	3.444908e-07	1.234425e-06
TCGA-AQ-A04L-01B-21D-A10M-09	51	47	4	37	7.843137e-02	1	exome+100bp flanks	34834024	9	32	2.583681e-07	9.186421e-07
TCGA-AQ-A0Y5-01A-11D-A14K-09	48	47	1	37	2.083333e-02	1	exome+100bp flanks	34834024	10	36	2.870756e-07	1.033472e-06
TCGA-AQ-A1H2-01A-11D-A13L-09	27	27	0	23	0	1	exome+100bp flanks	34834024	4	23	1.148303e-07	6.602740e-07
TCGA-AQ-A1H3-01A-31D-A13L-09	28	28	0	20	0	1	exome+100bp flanks	34834024	8	19	2.296605e-07	5.454437e-07
TCGA-AQ-A54N-01A-11D-A25Q-09	82	75	7	63	8.536585e-02	1	exome+100bp flanks	34834024	11	55	3.157832e-07	1.578916e-06
TCGA-AQ-A54O-01A-11D-A25Q-09	31	28	3	22	9.677419e-02	1	exome+100bp flanks	34834024	6	22	1.722454e-07	6.315664e-07
TCGA-AR-A0TS-01A-11D-A10Y-09	40	39	1	33	2.500000e-02	1	exome+100bp flanks	34834024	6	32	1.722454e-07	9.186421e-07
TCGA-AR-A0TU-01A-31D-A10G-09	78	78	0	61	0	0	coding only	34834024	16	60	4.593210e-07	1.722454e-06
TCGA-AR-A0TX-01A-11D-A099-09	287	281	6	222	2.090592e-02	0	coding only	34834024	56	208	1.607624e-06	5.971173e-06
TCGA-AR-A0TY-01A-12W-A12T-09	91	88	3	78	3.296703e-02	1	exome+100bp flanks	34834024	10	72	2.870756e-07	2.066945e-06
TCGA-AR-A0U0-01A-11D-A10G-09	49	48	1	42	2.040816e-02	1	exome+100bp flanks	34834024	6	38	1.722454e-07	1.090887e-06
TCGA-AR-A0U1-01A-11D-A10Y-09	67	65	2	54	2.985075e-02	0	coding only	34834024	10	51	2.870756e-07	1.464086e-06
TCGA-AR-A0U2-01A-11D-A10G-09	57	56	1	47	1.754386e-02	0	coding only	34834024	8	44	2.296605e-07	1.263133e-06
TCGA-AR-A0U3-01A-11D-A10G-09	35	34	1	27	2.857143e-02	1	exome+100bp flanks	34834024	7	22	2.009530e-07	6.315664e-07
TCGA-AR-A1AH-01A-11D-A12B-09	94	92	2	66	2.127660e-02	0	coding only	34834024	24	63	6.889816e-07	1.808577e-06
TCGA-AR-A1AI-01A-11D-A12Q-09	61	61	0	51	0	0	coding only	34834024	10	47	2.870756e-07	1.349256e-06
TCGA-AR-A1AJ-01A-21D-A12Q-09	25	24	1	21	4.000000e-02	1	exome+100bp flanks	34834024	2	19	5.741513e-08	5.454437e-07
TCGA-AR-A1AK-01A-21D-A12Q-09	64	60	4	49	6.250000e-02	1	exome+100bp flanks	34834024	10	48	2.870756e-07	1.377963e-06
TCGA-AR-A1AL-01A-21D-A12Q-09	25	24	1	19	4.000000e-02	1	exome+100bp flanks	34834024	5	18	1.435378e-07	5.167362e-07
TCGA-AR-A1AM-01A-41D-A228-09	29	26	3	21	1.034483e-01	1	exome+100bp flanks	34834024	4	19	1.148303e-07	5.454437e-07
TCGA-AR-A1AN-01A-11D-A12Q-09	18	18	0	14	0	1	exome+100bp flanks	34834024	4	14	1.148303e-07	4.019059e-07
TCGA-AR-A1AO-01A-11D-A12Q-09	8	8	0	5	0	1	exome+100bp flanks	34834024	3	5	8.612269e-08	1.435378e-07
TCGA-AR-A1AP-01A-11D-A12Q-09	34	33	1	31	2.941176e-02	1	exome+100bp flanks	34834024	1	28	2.870756e-08	8.038118e-07
TCGA-AR-A1AQ-01A-11D-A12Q-09	43	43	0	36	0	1	exome+100bp flanks	34834024	6	31	1.722454e-07	8.899345e-07
TCGA-AR-A1AR-01A-31D-A135-09	53	51	2	41	3.773585e-02	1	exome+100bp flanks	34834024	10	39	2.870756e-07	1.119595e-06
TCGA-AR-A1AS-01A-11D-A12Q-09	40	39	1	29	2.500000e-02	1	exome+100bp flanks	34834024	9	28	2.583681e-07	8.038118e-07
TCGA-AR-A1AT-01A-11D-A12Q-09	30	29	1	22	3.333333e-02	1	exome+100bp flanks	34834024	7	20	2.009530e-07	5.741513e-07
TCGA-AR-A1AU-01A-11D-A12Q-09	20	18	2	14	1.000000e-01	1	exome+100bp flanks	34834024	4	13	1.148303e-07	3.731983e-07
TCGA-AR-A1AV-01A-21D-A12Q-09	40	39	1	34	2.500000e-02	1	exome+100bp flanks	34834024	5	32	1.435378e-07	9.186421e-07
TCGA-AR-A1AW-01A-21D-A12Q-09	20	19	1	16	5.000000e-02	1	exome+100bp flanks	34834024	3	16	8.612269e-08	4.593210e-07
TCGA-AR-A1AX-01A-11D-A12Q-09	14	13	1	11	7.142857e-02	1	exome+100bp flanks	34834024	1	11	2.870756e-08	3.157832e-07
TCGA-AR-A1AY-01A-21D-A12Q-09	49	48	1	38	2.040816e-02	1	exome+100bp flanks	34834024	10	35	2.870756e-07	1.004765e-06
TCGA-AR-A24H-01A-11D-A167-09	127	125	2	104	1.574803e-02	0	coding only	34834024	20	98	5.741513e-07	2.813341e-06
TCGA-AR-A24K-01A-11D-A167-09	27	26	1	20	3.703704e-02	1	exome+100bp flanks	34834024	5	18	1.435378e-07	5.167362e-07
TCGA-AR-A24L-01A-11D-A167-09	43	43	0	33	0	1	exome+100bp flanks	34834024	10	31	2.870756e-07	8.899345e-07
TCGA-AR-A24M-01A-11D-A167-09	22	20	2	15	9.090909e-02	1	exome+100bp flanks	34834024	4	15	1.148303e-07	4.306135e-07
TCGA-AR-A24N-01A-11D-A167-09	33	31	2	25	6.060606e-02	1	exome+100bp flanks	34834024	6	24	1.722454e-07	6.889816e-07
TCGA-AR-A24O-01A-11D-A167-09	18	18	0	16	0	1	exome+100bp flanks	34834024	2	14	5.741513e-08	4.019059e-07
TCGA-AR-A24P-01A-11D-A167-09	18	18	0	17	0	1	exome+100bp flanks	34834024	1	16	2.870756e-08	4.593210e-07
TCGA-AR-A24Q-01A-12D-A167-09	144	142	2	106	1.388889e-02	0	coding only	34834024	33	102	9.473496e-07	2.928172e-06
TCGA-AR-A24R-01A-11D-A167-09	24	24	0	20	0	1	exome+100bp flanks	34834024	4	20	1.148303e-07	5.741513e-07
TCGA-AR-A24S-01A-11D-A167-09	42	40	2	31	4.761905e-02	1	exome+100bp flanks	34834024	8	28	2.296605e-07	8.038118e-07
TCGA-AR-A24T-01A-11D-A167-09	21	21	0	18	0	1	exome+100bp flanks	34834024	2	14	5.741513e-08	4.019059e-07
TCGA-AR-A24U-01A-11D-A167-09	20	19	1	14	5.000000e-02	1	exome+100bp flanks	34834024	5	13	1.435378e-07	3.731983e-07
TCGA-AR-A24V-01A-21D-A167-09	26	26	0	19	0	1	exome+100bp flanks	34834024	5	17	1.435378e-07	4.880286e-07
TCGA-AR-A24W-01A-11D-A17G-09	7	6	1	6	1.428571e-01	1	exome+100bp flanks	34834024	0	5	0	1.435378e-07
TCGA-AR-A24X-01A-11D-A167-09	29	28	1	19	3.448276e-02	1	exome+100bp flanks	34834024	8	18	2.296605e-07	5.167362e-07
TCGA-AR-A24Z-01A-11D-A167-09	39	39	0	32	0	1	exome+100bp flanks	34834024	6	31	1.722454e-07	8.899345e-07
TCGA-AR-A250-01A-31D-A167-09	67	66	1	51	1.492537e-02	0	coding only	34834024	13	47	3.731983e-07	1.349256e-06
TCGA-AR-A251-01A-12D-A167-09	152	152	0	124	0	0	coding only	34834024	28	118	8.038118e-07	3.387493e-06
TCGA-AR-A252-01A-11D-A167-09	8	8	0	7	0	1	exome+100bp flanks	34834024	1	7	2.870756e-08	2.009530e-07
TCGA-AR-A254-01A-21D-A167-09	32	32	0	28	0	1	exome+100bp flanks	34834024	4	28	1.148303e-07	8.038118e-07
TCGA-AR-A255-01A-11D-A167-09	56	54	2	46	3.571429e-02	1	exome+100bp flanks	34834024	8	42	2.296605e-07	1.205718e-06
TCGA-AR-A256-01A-11D-A167-09	186	184	2	146	1.075269e-02	0	coding only	34834024	37	141	1.062180e-06	4.047767e-06
TCGA-AR-A2LE-01A-11D-A17W-09	315	306	9	234	2.857143e-02	0	coding only	34834024	67	228	1.923407e-06	6.545325e-06
TCGA-AR-A2LH-01A-31D-A18P-09	21	21	0	18	0	1	exome+100bp flanks	34834024	3	16	8.612269e-08	4.593210e-07
TCGA-AR-A2LJ-01A-12D-A19Y-09	15	13	2	11	1.333333e-01	1	exome+100bp flanks	34834024	2	11	5.741513e-08	3.157832e-07
TCGA-AR-A2LK-01A-11D-A17W-09	37	37	0	28	0	1	exome+100bp flanks	34834024	9	27	2.583681e-07	7.751042e-07
TCGA-AR-A2LL-01A-11D-A17W-09	29	29	0	25	0	1	exome+100bp flanks	34834024	2	25	5.741513e-08	7.176891e-07
TCGA-AR-A2LM-01A-11D-A17W-09	15	15	0	11	0	1	exome+100bp flanks	34834024	3	11	8.612269e-08	3.157832e-07
TCGA-AR-A2LN-01A-21D-A18P-09	37	37	0	26	0	1	exome+100bp flanks	34834024	10	23	2.870756e-07	6.602740e-07
TCGA-AR-A2LO-01A-31D-A18P-09	12	12	0	11	0	1	exome+100bp flanks	34834024	1	11	2.870756e-08	3.157832e-07
TCGA-AR-A2LQ-01A-22D-A18P-09	6	5	1	4	1.666667e-01	1	exome+100bp flanks	34834024	1	3	2.870756e-08	8.612269e-08
TCGA-AR-A2LR-01A-12D-A18P-09	63	62	1	50	1.587302e-02	0	coding only	34834024	12	47	3.444908e-07	1.349256e-06
TCGA-AR-A5QM-01A-11D-A27P-09	34	29	5	24	1.470588e-01	1	exome+100bp flanks	34834024	5	24	1.435378e-07	6.889816e-07
TCGA-AR-A5QN-01A-12D-A28B-09	43	38	5	28	1.162791e-01	1	exome+100bp flanks	34834024	9	26	2.583681e-07	7.463967e-07
TCGA-AR-A5QP-01A-11D-A28B-09	26	23	3	21	1.153846e-01	1	exome+100bp flanks	34834024	1	20	2.870756e-08	5.741513e-07
TCGA-AR-A5QQ-01A-11D-A28B-09	61	53	8	42	1.311475e-01	1	exome+100bp flanks	34834024	10	38	2.870756e-07	1.090887e-06
TCGA-B6-A0I1-01A-11D-A21Q-09	64	53	11	39	1.718750e-01	1	exome+100bp flanks	34834024	13	33	3.731983e-07	9.473496e-07
TCGA-B6-A0I2-01A-11W-A050-09	51	50	1	41	1.960784e-02	0	coding only	34834024	8	39	2.296605e-07	1.119595e-06
TCGA-B6-A0I5-01A-11W-A100-09	23	22	1	18	4.347826e-02	1	exome+100bp flanks	34834024	4	17	1.148303e-07	4.880286e-07
TCGA-B6-A0I6-01A-11D-A128-09	102	95	7	74	6.862745e-02	1	exome+100bp flanks	34834024	17	73	4.880286e-07	2.095652e-06
TCGA-B6-A0I8-01A-11W-A050-09	106	105	1	79	9.433962e-03	0	coding only	34834024	25	73	7.176891e-07	2.095652e-06
TCGA-B6-A0I9-01A-11W-A050-09	73	69	4	58	5.479452e-02	1	exome+100bp flanks	34834024	11	56	3.157832e-07	1.607624e-06
TCGA-B6-A0IA-01A-11W-A050-09	48	47	1	41	2.083333e-02	1	exome+100bp flanks	34834024	5	39	1.435378e-07	1.119595e-06
TCGA-B6-A0IB-01A-11W-A050-09	57	56	1	50	1.754386e-02	0	coding only	34834024	6	46	1.722454e-07	1.320548e-06
TCGA-B6-A0IC-01A-11W-A050-09	47	44	3	37	6.382979e-02	1	exome+100bp flanks	34834024	7	34	2.009530e-07	9.760572e-07
TCGA-B6-A0IE-01A-11W-A050-09	31	31	0	27	0	1	exome+100bp flanks	34834024	4	26	1.148303e-07	7.463967e-07
TCGA-B6-A0IG-01A-11W-A050-09	45	45	0	40	0	1	exome+100bp flanks	34834024	5	38	1.435378e-07	1.090887e-06
TCGA-B6-A0IH-01A-11D-A10Y-09	23	23	0	21	0	1	exome+100bp flanks	34834024	2	21	5.741513e-08	6.028589e-07
TCGA-B6-A0IJ-01A-11W-A050-09	136	133	3	113	2.205882e-02	0	coding only	34834024	19	104	5.454437e-07	2.985587e-06
TCGA-B6-A0IK-01A-12W-A071-09	150	145	5	113	3.333333e-02	1	exome+100bp flanks	34834024	29	109	8.325194e-07	3.129125e-06
TCGA-B6-A0IM-01A-11W-A050-09	35	33	2	27	5.714286e-02	1	exome+100bp flanks	34834024	6	26	1.722454e-07	7.463967e-07
TCGA-B6-A0IN-01A-11W-A050-09	41	39	2	30	4.878049e-02	1	exome+100bp flanks	34834024	9	29	2.583681e-07	8.325194e-07
TCGA-B6-A0IO-01A-11W-A050-09	68	64	4	50	5.882353e-02	1	exome+100bp flanks	34834024	14	50	4.019059e-07	1.435378e-06
TCGA-B6-A0IP-01A-11D-A045-09	26	25	1	22	3.846154e-02	1	exome+100bp flanks	34834024	3	20	8.612269e-08	5.741513e-07
TCGA-B6-A0IQ-01A-11W-A050-09	58	56	2	46	3.448276e-02	1	exome+100bp flanks	34834024	9	44	2.583681e-07	1.263133e-06
TCGA-B6-A0RE-01A-11W-A071-09	103	100	3	80	2.912621e-02	0	coding only	34834024	20	75	5.741513e-07	2.153067e-06
TCGA-B6-A0RG-01A-11W-A071-09	60	58	2	49	3.333333e-02	1	exome+100bp flanks	34834024	9	48	2.583681e-07	1.377963e-06
TCGA-B6-A0RH-01A-21D-A10Y-09	40	36	4	30	1.000000e-01	1	exome+100bp flanks	34834024	6	28	1.722454e-07	8.038118e-07
TCGA-B6-A0RI-01A-11W-A071-09	17	17	0	15	0	1	exome+100bp flanks	34834024	2	14	5.741513e-08	4.019059e-07
TCGA-B6-A0RN-01A-12D-A099-09	39	38	1	29	2.564103e-02	1	exome+100bp flanks	34834024	9	28	2.583681e-07	8.038118e-07
TCGA-B6-A0RO-01A-22D-A099-09	37	35	2	29	5.405405e-02	1	exome+100bp flanks	34834024	6	25	1.722454e-07	7.176891e-07
TCGA-B6-A0RP-01A-21D-A099-09	20	20	0	18	0	1	exome+100bp flanks	34834024	2	15	5.741513e-08	4.306135e-07
TCGA-B6-A0RQ-01A-11D-A10Y-09	17	16	1	12	5.882353e-02	1	exome+100bp flanks	34834024	3	11	8.612269e-08	3.157832e-07
TCGA-B6-A0RT-01A-21D-A099-09	12	12	0	11	0	1	exome+100bp flanks	34834024	1	11	2.870756e-08	3.157832e-07
TCGA-B6-A0RU-01A-11D-A099-09	43	42	1	36	2.325581e-02	1	exome+100bp flanks	34834024	6	33	1.722454e-07	9.473496e-07
TCGA-B6-A0RV-01A-11D-A099-09	46	45	1	31	2.173913e-02	1	exome+100bp flanks	34834024	14	27	4.019059e-07	7.751042e-07
TCGA-B6-A0WS-01A-11D-A10Y-09	22	22	0	12	0	1	exome+100bp flanks	34834024	9	12	2.583681e-07	3.444908e-07
TCGA-B6-A0WT-01A-11D-A10G-09	19	19	0	15	0	1	exome+100bp flanks	34834024	4	14	1.148303e-07	4.019059e-07
TCGA-B6-A0WV-01A-11D-A10G-09	29	27	2	23	6.896552e-02	1	exome+100bp flanks	34834024	4	23	1.148303e-07	6.602740e-07
TCGA-B6-A0WW-01A-11D-A10G-09	38	38	0	29	0	1	exome+100bp flanks	34834024	9	27	2.583681e-07	7.751042e-07
TCGA-B6-A0WX-01A-11D-A10G-09	30	30	0	22	0	1	exome+100bp flanks	34834024	7	21	2.009530e-07	6.028589e-07
TCGA-B6-A0WY-01A-11D-A10G-09	15	13	2	12	1.333333e-01	1	exome+100bp flanks	34834024	1	12	2.870756e-08	3.444908e-07
TCGA-B6-A0WZ-01A-11D-A10G-09	39	39	0	25	0	1	exome+100bp flanks	34834024	12	24	3.444908e-07	6.889816e-07
TCGA-B6-A0X0-01A-21D-A10Y-09	21	21	0	16	0	1	exome+100bp flanks	34834024	5	15	1.435378e-07	4.306135e-07
TCGA-B6-A0X1-01A-11D-A10G-09	64	60	4	47	6.250000e-02	1	exome+100bp flanks	34834024	12	45	3.444908e-07	1.291840e-06
TCGA-B6-A0X4-01A-11D-A10G-09	19	19	0	16	0	1	exome+100bp flanks	34834024	3	16	8.612269e-08	4.593210e-07
TCGA-B6-A0X5-01A-21D-A10G-09	33	32	1	22	3.030303e-02	1	exome+100bp flanks	34834024	10	20	2.870756e-07	5.741513e-07
TCGA-B6-A0X7-01A-11D-A10M-09	19	18	1	11	5.263158e-02	1	exome+100bp flanks	34834024	6	11	1.722454e-07	3.157832e-07
TCGA-B6-A1KC-01B-11D-A159-09	26	25	1	19	3.846154e-02	1	exome+100bp flanks	34834024	6	18	1.722454e-07	5.167362e-07
TCGA-B6-A1KF-01A-11D-A13L-09	51	50	1	39	1.960784e-02	0	coding only	34834024	7	36	2.009530e-07	1.033472e-06
TCGA-B6-A1KI-01A-11D-A14K-09	20	19	1	15	5.000000e-02	1	exome+100bp flanks	34834024	4	13	1.148303e-07	3.731983e-07
TCGA-B6-A1KN-01A-11D-A13L-09	55	53	2	46	3.636364e-02	1	exome+100bp flanks	34834024	7	43	2.009530e-07	1.234425e-06
TCGA-B6-A2IU-01A-32D-A19T-09	43	42	1	33	2.325581e-02	1	exome+100bp flanks	34834024	8	28	2.296605e-07	8.038118e-07
TCGA-B6-A3ZX-01A-11D-A23C-09	57	49	8	36	1.403509e-01	1	exome+100bp flanks	34834024	13	32	3.731983e-07	9.186421e-07
TCGA-B6-A400-01A-11D-A23C-09	134	119	15	97	1.119403e-01	1	exome+100bp flanks	34834024	21	94	6.028589e-07	2.698511e-06
TCGA-B6-A401-01A-11D-A23C-09	24	20	4	16	1.666667e-01	1	exome+100bp flanks	34834024	4	15	1.148303e-07	4.306135e-07
TCGA-B6-A402-01A-11D-A23C-09	67	56	11	41	1.641791e-01	1	exome+100bp flanks	34834024	11	34	3.157832e-07	9.760572e-07
TCGA-B6-A408-01A-12D-A243-09	52	44	8	31	1.538462e-01	1	exome+100bp flanks	34834024	12	30	3.444908e-07	8.612269e-07
TCGA-B6-A409-01A-11D-A243-09	37	35	2	24	5.405405e-02	1	exome+100bp flanks	34834024	10	23	2.870756e-07	6.602740e-07
TCGA-B6-A40B-01A-11D-A23C-09	64	55	9	44	1.406250e-01	1	exome+100bp flanks	34834024	9	40	2.583681e-07	1.148303e-06
TCGA-B6-A40C-01A-11D-A23C-09	40	39	1	29	2.500000e-02	1	exome+100bp flanks	34834024	9	27	2.583681e-07	7.751042e-07
TCGA-BH-A0AU-01A-11D-A12Q-09	20	20	0	14	0	1	exome+100bp flanks	34834024	6	13	1.722454e-07	3.731983e-07
TCGA-BH-A0AV-01A-31D-A10Y-09	67	65	2	47	2.985075e-02	0	coding only	34834024	16	46	4.593210e-07	1.320548e-06
TCGA-BH-A0AW-01A-11W-A071-09	146	143	3	108	2.054795e-02	0	coding only	34834024	33	102	9.473496e-07	2.928172e-06
TCGA-BH-A0AY-01A-21W-A019-09	57	54	3	44	5.263158e-02	1	exome+100bp flanks	34834024	10	43	2.870756e-07	1.234425e-06
TCGA-BH-A0AZ-01A-21D-A12Q-09	58	57	1	45	1.724138e-02	0	coding only	34834024	12	41	3.444908e-07	1.177010e-06
TCGA-BH-A0B0-01A-21D-A10Y-09	51	49	2	38	3.921569e-02	1	exome+100bp flanks	34834024	9	33	2.583681e-07	9.473496e-07
TCGA-BH-A0B1-01A-12W-A071-09	60	60	0	50	0	0	coding only	34834024	10	47	2.870756e-07	1.349256e-06
TCGA-BH-A0B3-01A-11W-A071-09	38	34	4	27	1.052632e-01	1	exome+100bp flanks	34834024	7	25	2.009530e-07	7.176891e-07
TCGA-BH-A0B4-01A-11W-A019-09	65	64	1	57	1.538462e-02	0	coding only	34834024	7	54	2.009530e-07	1.550208e-06
TCGA-BH-A0B5-01A-11D-A12Q-09	64	63	1	52	1.562500e-02	0	coding only	34834024	9	48	2.583681e-07	1.377963e-06
TCGA-BH-A0B6-01A-11D-A19Y-09	830	741	89	540	1.072289e-01	1	exome+100bp flanks	34834024	183	506	5.253484e-06	1.452603e-05
TCGA-BH-A0B7-01A-12D-A10Y-09	14	13	1	12	7.142857e-02	1	exome+100bp flanks	34834024	1	12	2.870756e-08	3.444908e-07
TCGA-BH-A0B8-01A-21W-A071-09	42	41	1	34	2.380952e-02	1	exome+100bp flanks	34834024	7	33	2.009530e-07	9.473496e-07
TCGA-BH-A0B9-01A-11W-A071-09	38	38	0	32	0	1	exome+100bp flanks	34834024	6	30	1.722454e-07	8.612269e-07
TCGA-BH-A0BA-01A-11W-A071-09	31	28	3	23	9.677419e-02	1	exome+100bp flanks	34834024	5	21	1.435378e-07	6.028589e-07
TCGA-BH-A0BC-01A-22D-A099-09	34	33	1	25	2.941176e-02	1	exome+100bp flanks	34834024	8	24	2.296605e-07	6.889816e-07
TCGA-BH-A0BD-01A-11W-A050-09	18	17	1	15	5.555556e-02	1	exome+100bp flanks	34834024	2	14	5.741513e-08	4.019059e-07
TCGA-BH-A0BF-01A-21D-A12Q-09	30	27	3	19	1.000000e-01	1	exome+100bp flanks	34834024	8	19	2.296605e-07	5.454437e-07
TCGA-BH-A0BG-01A-11D-A10Y-09	42	38	4	28	9.523810e-02	1	exome+100bp flanks	34834024	9	26	2.583681e-07	7.463967e-07
TCGA-BH-A0BJ-01A-11W-A071-09	28	27	1	24	3.571429e-02	1	exome+100bp flanks	34834024	3	24	8.612269e-08	6.889816e-07
TCGA-BH-A0BL-01A-11D-A10Y-09	54	53	1	47	1.851852e-02	0	coding only	34834024	5	44	1.435378e-07	1.263133e-06
TCGA-BH-A0BM-01A-11W-A071-09	40	38	2	30	5.000000e-02	1	exome+100bp flanks	34834024	8	30	2.296605e-07	8.612269e-07
TCGA-BH-A0BO-01A-23D-A12B-09	24	24	0	22	0	1	exome+100bp flanks	34834024	2	20	5.741513e-08	5.741513e-07
TCGA-BH-A0BP-01A-11D-A10Y-09	136	134	2	109	1.470588e-02	0	coding only	34834024	24	100	6.889816e-07	2.870756e-06
TCGA-BH-A0BQ-01A-21D-A10Y-09	22	21	1	16	4.545455e-02	1	exome+100bp flanks	34834024	5	15	1.435378e-07	4.306135e-07
TCGA-BH-A0BR-01A-21W-A12T-09	59	58	1	50	1.694915e-02	0	coding only	34834024	7	47	2.009530e-07	1.349256e-06
TCGA-BH-A0BS-01A-11D-A12Q-09	14	14	0	10	0	1	exome+100bp flanks	34834024	4	9	1.148303e-07	2.583681e-07
TCGA-BH-A0BT-01A-11D-A12Q-09	35	34	1	28	2.857143e-02	1	exome+100bp flanks	34834024	3	28	8.612269e-08	8.038118e-07
TCGA-BH-A0BV-01A-11W-A019-09	33	32	1	27	3.030303e-02	1	exome+100bp flanks	34834024	5	25	1.435378e-07	7.176891e-07
TCGA-BH-A0BW-01A-11D-A10Y-09	91	89	2	75	2.197802e-02	0	coding only	34834024	13	68	3.731983e-07	1.952114e-06
TCGA-BH-A0BZ-01A-31D-A12Q-09	222	219	3	183	1.351351e-02	0	coding only	34834024	36	178	1.033472e-06	5.109947e-06
TCGA-BH-A0C0-01A-21W-A071-09	74	71	3	62	4.054054e-02	1	exome+100bp flanks	34834024	8	61	2.296605e-07	1.751161e-06
TCGA-BH-A0C1-01B-11D-A12B-09	33	30	3	22	9.090909e-02	1	exome+100bp flanks	34834024	7	19	2.009530e-07	5.454437e-07
TCGA-BH-A0C3-01A-21D-A12Q-09	14	14	0	10	0	1	exome+100bp flanks	34834024	4	9	1.148303e-07	2.583681e-07
TCGA-BH-A0C7-01B-11D-A10Y-09	37	36	1	30	2.702703e-02	1	exome+100bp flanks	34834024	6	29	1.722454e-07	8.325194e-07
TCGA-BH-A0DD-01A-31D-A12Q-09	21	21	0	13	0	1	exome+100bp flanks	34834024	7	11	2.009530e-07	3.157832e-07
TCGA-BH-A0DE-01A-11D-A10Y-09	31	29	2	24	6.451613e-02	1	exome+100bp flanks	34834024	4	23	1.148303e-07	6.602740e-07
TCGA-BH-A0DG-01A-21D-A12Q-09	24	24	0	23	0	1	exome+100bp flanks	34834024	1	22	2.870756e-08	6.315664e-07
TCGA-BH-A0DH-01A-11D-A099-09	40	37	3	31	7.500000e-02	1	exome+100bp flanks	34834024	5	29	1.435378e-07	8.325194e-07
TCGA-BH-A0DI-01A-21D-A12Q-09	31	30	1	23	3.225806e-02	1	exome+100bp flanks	34834024	6	23	1.722454e-07	6.602740e-07
TCGA-BH-A0DK-01A-21W-A071-09	89	84	5	72	5.617978e-02	1	exome+100bp flanks	34834024	12	70	3.444908e-07	2.009530e-06
TCGA-BH-A0DL-01A-11D-A10Y-09	43	42	1	36	2.325581e-02	1	exome+100bp flanks	34834024	5	34	1.435378e-07	9.760572e-07
TCGA-BH-A0DO-01B-11D-A12B-09	22	20	2	13	9.090909e-02	1	exome+100bp flanks	34834024	5	13	1.435378e-07	3.731983e-07
TCGA-BH-A0DP-01A-21W-A071-09	40	38	2	33	5.000000e-02	1	exome+100bp flanks	34834024	4	31	1.148303e-07	8.899345e-07
TCGA-BH-A0DQ-01A-11D-A099-09	27	27	0	24	0	1	exome+100bp flanks	34834024	3	22	8.612269e-08	6.315664e-07
TCGA-BH-A0DS-01A-11W-A071-09	31	29	2	22	6.451613e-02	1	exome+100bp flanks	34834024	6	20	1.722454e-07	5.741513e-07
TCGA-BH-A0DT-01A-21D-A12B-09	14	14	0	12	0	1	exome+100bp flanks	34834024	2	11	5.741513e-08	3.157832e-07
TCGA-BH-A0DV-01A-21D-A12Q-09	5	5	0	4	0	1	exome+100bp flanks	34834024	1	4	2.870756e-08	1.148303e-07
TCGA-BH-A0DX-01A-11D-A10Y-09	60	60	0	55	0	0	coding only	34834024	4	51	1.148303e-07	1.464086e-06
TCGA-BH-A0DZ-01A-11W-A019-09	266	260	6	186	2.255639e-02	0	coding only	34834024	68	179	1.952114e-06	5.138654e-06
TCGA-BH-A0E0-01A-11W-A071-09	29	29	0	24	0	1	exome+100bp flanks	34834024	5	22	1.435378e-07	6.315664e-07
TCGA-BH-A0E1-01A-11W-A071-09	34	34	0	24	0	1	exome+100bp flanks	34834024	9	24	2.583681e-07	6.889816e-07
TCGA-BH-A0E2-01A-11W-A071-09	35	35	0	30	0	1	exome+100bp flanks	34834024	5	30	1.435378e-07	8.612269e-07
TCGA-BH-A0E6-01A-11W-A050-09	55	53	2	45	3.636364e-02	1	exome+100bp flanks	34834024	8	44	2.296605e-07	1.263133e-06
TCGA-BH-A0E7-01A-11W-A050-09	48	48	0	39	0	1	exome+100bp flanks	34834024	8	36	2.296605e-07	1.033472e-06
TCGA-BH-A0E9-01B-11D-A10Y-09	12	11	1	9	8.333333e-02	1	exome+100bp flanks	34834024	2	9	5.741513e-08	2.583681e-07
TCGA-BH-A0EA-01A-11D-A10Y-09	21	21	0	17	0	1	exome+100bp flanks	34834024	4	17	1.148303e-07	4.880286e-07
TCGA-BH-A0EB-01A-11W-A050-09	38	36	2	27	5.263158e-02	1	exome+100bp flanks	34834024	8	24	2.296605e-07	6.889816e-07
TCGA-BH-A0EE-01A-11W-A050-09	80	76	4	66	5.000000e-02	1	exome+100bp flanks	34834024	9	65	2.583681e-07	1.865992e-06
TCGA-BH-A0EI-01A-11D-A10Y-09	18	16	2	13	1.111111e-01	1	exome+100bp flanks	34834024	3	13	8.612269e-08	3.731983e-07
TCGA-BH-A0GY-01A-11W-A071-09	45	44	1	38	2.222222e-02	1	exome+100bp flanks	34834024	6	34	1.722454e-07	9.760572e-07
TCGA-BH-A0GZ-01A-11W-A071-09	27	26	1	22	3.703704e-02	1	exome+100bp flanks	34834024	3	22	8.612269e-08	6.315664e-07
TCGA-BH-A0H0-01A-11W-A071-09	20	20	0	14	0	1	exome+100bp flanks	34834024	5	13	1.435378e-07	3.731983e-07
TCGA-BH-A0H3-01A-11D-A12Q-09	16	16	0	13	0	1	exome+100bp flanks	34834024	1	13	2.870756e-08	3.731983e-07
TCGA-BH-A0H5-01A-21D-A10Y-09	8	7	1	5	1.250000e-01	1	exome+100bp flanks	34834024	2	4	5.741513e-08	1.148303e-07
TCGA-BH-A0H6-01A-21W-A071-09	17	16	1	12	5.882353e-02	1	exome+100bp flanks	34834024	4	12	1.148303e-07	3.444908e-07
TCGA-BH-A0H7-01A-13W-A071-09	63	61	2	50	3.174603e-02	1	exome+100bp flanks	34834024	11	49	3.157832e-07	1.406671e-06
TCGA-BH-A0H9-01A-11W-A071-09	40	39	1	32	2.500000e-02	1	exome+100bp flanks	34834024	7	31	2.009530e-07	8.899345e-07
TCGA-BH-A0HA-01A-11D-A12Q-09	285	279	6	225	2.105263e-02	0	coding only	34834024	47	218	1.349256e-06	6.258249e-06
TCGA-BH-A0HB-01A-11W-A071-09	33	32	1	27	3.030303e-02	1	exome+100bp flanks	34834024	5	26	1.435378e-07	7.463967e-07
TCGA-BH-A0HF-01A-11W-A071-09	929	877	52	600	5.597417e-02	1	exome+100bp flanks	34834024	270	583	7.751042e-06	1.673651e-05
TCGA-BH-A0HI-01A-11D-A099-09	25	25	0	22	0	1	exome+100bp flanks	34834024	3	19	8.612269e-08	5.454437e-07
TCGA-BH-A0HK-01A-11W-A071-09	104	102	2	79	1.923077e-02	0	coding only	34834024	22	73	6.315664e-07	2.095652e-06
TCGA-BH-A0HL-01A-11W-A050-09	35	35	0	28	0	1	exome+100bp flanks	34834024	6	27	1.722454e-07	7.751042e-07
TCGA-BH-A0HN-01A-11D-A099-09	27	25	2	20	7.407407e-02	1	exome+100bp flanks	34834024	4	20	1.148303e-07	5.741513e-07
TCGA-BH-A0HO-01A-11W-A050-09	22	21	1	15	4.545455e-02	1	exome+100bp flanks	34834024	6	15	1.722454e-07	4.306135e-07
TCGA-BH-A0HP-01A-12D-A099-09	237	234	3	179	1.265823e-02	0	coding only	34834024	50	169	1.435378e-06	4.851578e-06
TCGA-BH-A0HQ-01A-11W-A050-09	32	30	2	25	6.250000e-02	1	exome+100bp flanks	34834024	5	22	1.435378e-07	6.315664e-07
TCGA-BH-A0HU-01A-11W-A050-09	34	33	1	27	2.941176e-02	1	exome+100bp flanks	34834024	4	25	1.148303e-07	7.176891e-07
TCGA-BH-A0HW-01A-11W-A050-09	39	38	1	31	2.564103e-02	1	exome+100bp flanks	34834024	7	31	2.009530e-07	8.899345e-07
TCGA-BH-A0HX-01A-21W-A071-09	57	57	0	44	0	0	coding only	34834024	13	44	3.731983e-07	1.263133e-06
TCGA-BH-A0HY-01A-11W-A071-09	53	53	0	41	0	0	coding only	34834024	10	39	2.870756e-07	1.119595e-06
TCGA-BH-A0RX-01A-21D-A099-09	19	19	0	15	0	1	exome+100bp flanks	34834024	4	14	1.148303e-07	4.019059e-07
TCGA-BH-A0W3-01A-11D-A10G-09	20	20	0	13	0	1	exome+100bp flanks	34834024	6	13	1.722454e-07	3.731983e-07
TCGA-BH-A0W4-01A-11D-A10G-09	30	30	0	26	0	1	exome+100bp flanks	34834024	4	23	1.148303e-07	6.602740e-07
TCGA-BH-A0W5-01A-11D-A10G-09	25	24	1	21	4.000000e-02	1	exome+100bp flanks	34834024	3	20	8.612269e-08	5.741513e-07
TCGA-BH-A0W7-01A-11D-A10Y-09	176	173	3	124	1.704545e-02	0	coding only	34834024	46	116	1.320548e-06	3.330078e-06
TCGA-BH-A0WA-01A-11D-A10G-09	89	86	3	70	3.370787e-02	1	exome+100bp flanks	34834024	15	68	4.306135e-07	1.952114e-06
TCGA-BH-A18F-01A-11D-A12B-09	54	52	2	39	3.703704e-02	1	exome+100bp flanks	34834024	13	38	3.731983e-07	1.090887e-06
TCGA-BH-A18G-01A-11D-A12B-09	1471	1358	113	1065	7.681849e-02	1	exome+100bp flanks	34834024	278	1005	7.980703e-06	2.885110e-05
TCGA-BH-A18H-01A-11D-A12B-09	29	29	0	24	0	1	exome+100bp flanks	34834024	5	23	1.435378e-07	6.602740e-07
TCGA-BH-A18I-01A-11D-A12B-09	24	24	0	19	0	1	exome+100bp flanks	34834024	5	19	1.435378e-07	5.454437e-07
TCGA-BH-A18J-01A-11D-A12B-09	63	60	3	48	4.761905e-02	1	exome+100bp flanks	34834024	12	45	3.444908e-07	1.291840e-06
TCGA-BH-A18K-01A-11D-A12B-09	43	43	0	30	0	1	exome+100bp flanks	34834024	12	27	3.444908e-07	7.751042e-07
TCGA-BH-A18L-01A-32D-A12B-09	40	38	2	30	5.000000e-02	1	exome+100bp flanks	34834024	8	30	2.296605e-07	8.612269e-07
TCGA-BH-A18M-01A-11D-A12B-09	13	12	1	11	7.692308e-02	1	exome+100bp flanks	34834024	1	11	2.870756e-08	3.157832e-07
TCGA-BH-A18N-01A-11D-A12B-09	31	31	0	27	0	1	exome+100bp flanks	34834024	4	26	1.148303e-07	7.463967e-07
TCGA-BH-A18P-01A-11D-A12B-09	315	310	5	233	1.587302e-02	0	coding only	34834024	73	223	2.095652e-06	6.401787e-06
TCGA-BH-A18Q-01A-12D-A12B-09	78	78	0	59	0	0	coding only	34834024	19	57	5.454437e-07	1.636331e-06
TCGA-BH-A18R-01A-11D-A12B-09	26	25	1	18	3.846154e-02	1	exome+100bp flanks	34834024	7	15	2.009530e-07	4.306135e-07
TCGA-BH-A18S-01A-11D-A12B-09	25	24	1	18	4.000000e-02	1	exome+100bp flanks	34834024	6	18	1.722454e-07	5.167362e-07
TCGA-BH-A18T-01A-11D-A12B-09	73	72	1	55	1.369863e-02	0	coding only	34834024	16	54	4.593210e-07	1.550208e-06
TCGA-BH-A18U-01A-21D-A12B-09	96	94	2	64	2.083333e-02	0	coding only	34834024	28	62	8.038118e-07	1.779869e-06
TCGA-BH-A18V-01A-11D-A12B-09	183	179	4	143	2.185792e-02	0	coding only	34834024	34	133	9.760572e-07	3.818106e-06
TCGA-BH-A1EN-01A-11D-A17G-09	47	46	1	35	2.127660e-02	1	exome+100bp flanks	34834024	11	33	3.157832e-07	9.473496e-07
TCGA-BH-A1EO-01A-11D-A135-09	33	30	3	27	9.090909e-02	1	exome+100bp flanks	34834024	2	25	5.741513e-08	7.176891e-07
TCGA-BH-A1ES-01A-11D-A135-09	18	17	1	16	5.555556e-02	1	exome+100bp flanks	34834024	1	15	2.870756e-08	4.306135e-07
TCGA-BH-A1ET-01A-11D-A135-09	23	23	0	18	0	1	exome+100bp flanks	34834024	4	14	1.148303e-07	4.019059e-07
TCGA-BH-A1EU-01A-11D-A135-09	16	16	0	13	0	1	exome+100bp flanks	34834024	3	13	8.612269e-08	3.731983e-07
TCGA-BH-A1EV-01A-11D-A135-09	84	84	0	67	0	0	coding only	34834024	16	63	4.593210e-07	1.808577e-06
TCGA-BH-A1EW-01A-11D-A135-09	14	13	1	9	7.142857e-02	1	exome+100bp flanks	34834024	4	7	1.148303e-07	2.009530e-07
TCGA-BH-A1EX-01A-11D-A13L-09	13	12	1	11	7.692308e-02	1	exome+100bp flanks	34834024	1	11	2.870756e-08	3.157832e-07
TCGA-BH-A1EY-01A-11D-A13L-09	43	43	0	28	0	1	exome+100bp flanks	34834024	14	27	4.019059e-07	7.751042e-07
TCGA-BH-A1F0-01A-11D-A135-09	21	21	0	15	0	1	exome+100bp flanks	34834024	6	13	1.722454e-07	3.731983e-07
TCGA-BH-A1F2-01A-31D-A13L-09	46	44	2	30	4.347826e-02	1	exome+100bp flanks	34834024	14	27	4.019059e-07	7.751042e-07
TCGA-BH-A1F5-01A-12D-A13L-09	31	31	0	25	0	1	exome+100bp flanks	34834024	6	21	1.722454e-07	6.028589e-07
TCGA-BH-A1F6-01A-11D-A13L-09	67	64	3	45	4.477612e-02	1	exome+100bp flanks	34834024	19	42	5.454437e-07	1.205718e-06
TCGA-BH-A1F8-01A-11D-A13L-09	135	135	0	106	0	0	coding only	34834024	28	96	8.038118e-07	2.755926e-06
TCGA-BH-A1FC-01A-11D-A13L-09	74	72	2	63	2.702703e-02	0	coding only	34834024	6	57	1.722454e-07	1.636331e-06
TCGA-BH-A1FD-01A-11W-A14Q-09	28	27	1	22	3.571429e-02	1	exome+100bp flanks	34834024	5	19	1.435378e-07	5.454437e-07
TCGA-BH-A1FE-01A-11D-A13L-09	13	12	1	11	7.692308e-02	1	exome+100bp flanks	34834024	1	11	2.870756e-08	3.157832e-07
TCGA-BH-A1FG-01A-11D-A13L-09	17	17	0	13	0	1	exome+100bp flanks	34834024	3	13	8.612269e-08	3.731983e-07
TCGA-BH-A1FH-01A-12D-A13L-09	4	4	0	2	0	1	exome+100bp flanks	34834024	2	2	5.741513e-08	5.741513e-08
TCGA-BH-A1FJ-01A-11D-A13L-09	27	27	0	20	0	1	exome+100bp flanks	34834024	7	20	2.009530e-07	5.741513e-07
TCGA-BH-A1FL-01A-11D-A13L-09	23	22	1	20	4.347826e-02	1	exome+100bp flanks	34834024	1	19	2.870756e-08	5.454437e-07
TCGA-BH-A1FM-01A-11D-A13L-09	37	36	1	31	2.702703e-02	1	exome+100bp flanks	34834024	5	30	1.435378e-07	8.612269e-07
TCGA-BH-A1FN-01A-11D-A13L-09	109	108	1	85	9.174312e-03	0	coding only	34834024	22	78	6.315664e-07	2.239190e-06
TCGA-BH-A1FR-01A-11D-A13L-09	13	13	0	12	0	1	exome+100bp flanks	34834024	1	9	2.870756e-08	2.583681e-07
TCGA-BH-A1FU-01A-11D-A14G-09	27	27	0	21	0	1	exome+100bp flanks	34834024	6	20	1.722454e-07	5.741513e-07
TCGA-BH-A201-01A-11D-A14K-09	17	16	1	14	5.882353e-02	1	exome+100bp flanks	34834024	2	14	5.741513e-08	4.019059e-07
TCGA-BH-A202-01A-11D-A14K-09	28	28	0	24	0	1	exome+100bp flanks	34834024	4	24	1.148303e-07	6.889816e-07
TCGA-BH-A203-01A-12D-A167-09	59	59	0	43	0	0	coding only	34834024	16	39	4.593210e-07	1.119595e-06
TCGA-BH-A204-01A-11D-A159-09	40	39	1	34	2.500000e-02	1	exome+100bp flanks	34834024	5	31	1.435378e-07	8.899345e-07
TCGA-BH-A208-01A-11D-A159-09	57	55	2	45	3.508772e-02	1	exome+100bp flanks	34834024	10	42	2.870756e-07	1.205718e-06
TCGA-BH-A209-01A-11D-A17G-09	75	73	2	54	2.666667e-02	0	coding only	34834024	19	50	5.454437e-07	1.435378e-06
TCGA-BH-A28O-01A-11D-A228-09	24	19	5	12	2.083333e-01	1	exome+100bp flanks	34834024	5	11	1.435378e-07	3.157832e-07
TCGA-BH-A28Q-01A-11D-A16D-09	23	22	1	16	4.347826e-02	1	exome+100bp flanks	34834024	3	16	8.612269e-08	4.593210e-07
TCGA-BH-A2L8-01A-11D-A18P-09	416	413	3	312	7.211538e-03	0	coding only	34834024	99	287	2.842049e-06	8.239071e-06
TCGA-BH-A42T-01A-11D-A243-09	37	34	3	26	8.108108e-02	1	exome+100bp flanks	34834024	6	23	1.722454e-07	6.602740e-07
TCGA-BH-A42U-01A-12D-A243-09	14	11	3	10	2.142857e-01	1	exome+100bp flanks	34834024	0	7	0	2.009530e-07
TCGA-BH-A42V-01A-11D-A243-09	37	34	3	30	8.108108e-02	1	exome+100bp flanks	34834024	3	29	8.612269e-08	8.325194e-07
TCGA-BH-A5IZ-01A-11D-A27P-09	93	80	13	63	1.397849e-01	1	exome+100bp flanks	34834024	15	59	4.306135e-07	1.693746e-06
TCGA-BH-A5J0-01A-11D-A27P-09	67	61	6	51	8.955224e-02	1	exome+100bp flanks	34834024	10	50	2.870756e-07	1.435378e-06
TCGA-C8-A12K-01A-21D-A10Y-09	108	108	0	83	0	0	coding only	34834024	25	80	7.176891e-07	2.296605e-06
TCGA-C8-A12L-01A-11D-A10Y-09	72	71	1	59	1.388889e-02	0	coding only	34834024	12	58	3.444908e-07	1.665039e-06
TCGA-C8-A12M-01A-11D-A135-09	57	57	0	46	0	0	coding only	34834024	10	42	2.870756e-07	1.205718e-06
TCGA-C8-A12N-01A-11D-A10Y-09	24	24	0	17	0	1	exome+100bp flanks	34834024	7	17	2.009530e-07	4.880286e-07
TCGA-C8-A12O-01A-11D-A10Y-09	30	28	2	24	6.666667e-02	1	exome+100bp flanks	34834024	4	23	1.148303e-07	6.602740e-07
TCGA-C8-A12P-01A-11D-A10Y-09	155	150	5	116	3.225806e-02	1	exome+100bp flanks	34834024	33	112	9.473496e-07	3.215247e-06
TCGA-C8-A12Q-01A-11D-A10Y-09	100	100	0	77	0	0	coding only	34834024	18	74	5.167362e-07	2.124360e-06
TCGA-C8-A12T-01A-11D-A10Y-09	154	151	3	123	1.948052e-02	0	coding only	34834024	26	114	7.463967e-07	3.272662e-06
TCGA-C8-A12U-01A-11D-A10Y-09	36	36	0	29	0	1	exome+100bp flanks	34834024	7	26	2.009530e-07	7.463967e-07
TCGA-C8-A12V-01A-11D-A10Y-09	15	15	0	13	0	1	exome+100bp flanks	34834024	2	13	5.741513e-08	3.731983e-07
TCGA-C8-A12W-01A-11D-A10Y-09	47	47	0	38	0	1	exome+100bp flanks	34834024	8	38	2.296605e-07	1.090887e-06
TCGA-C8-A12X-01A-11D-A10Y-09	44	43	1	33	2.272727e-02	1	exome+100bp flanks	34834024	9	33	2.583681e-07	9.473496e-07
TCGA-C8-A12Y-01A-11D-A12B-09	32	30	2	22	6.250000e-02	1	exome+100bp flanks	34834024	8	22	2.296605e-07	6.315664e-07
TCGA-C8-A12Z-01A-11D-A10Y-09	48	47	1	38	2.083333e-02	1	exome+100bp flanks	34834024	8	37	2.296605e-07	1.062180e-06
TCGA-C8-A130-01A-31D-A10Y-09	39	37	2	26	5.128205e-02	1	exome+100bp flanks	34834024	11	23	3.157832e-07	6.602740e-07
TCGA-C8-A131-01A-11D-A10Y-09	56	56	0	47	0	0	coding only	34834024	8	45	2.296605e-07	1.291840e-06
TCGA-C8-A132-01A-31D-A10Y-09	50	49	1	40	2.000000e-02	0	coding only	34834024	9	39	2.583681e-07	1.119595e-06
TCGA-C8-A133-01A-32D-A12B-09	23	23	0	19	0	1	exome+100bp flanks	34834024	4	18	1.148303e-07	5.167362e-07
TCGA-C8-A134-01A-11D-A10Y-09	96	95	1	75	1.041667e-02	0	coding only	34834024	18	71	5.167362e-07	2.038237e-06
TCGA-C8-A135-01A-11D-A10Y-09	49	49	0	39	0	1	exome+100bp flanks	34834024	10	36	2.870756e-07	1.033472e-06
TCGA-C8-A137-01A-11D-A10Y-09	47	47	0	37	0	1	exome+100bp flanks	34834024	9	33	2.583681e-07	9.473496e-07
TCGA-C8-A138-01A-11D-A10Y-09	49	49	0	40	0	1	exome+100bp flanks	34834024	9	39	2.583681e-07	1.119595e-06
TCGA-C8-A1HE-01A-11D-A188-09	39	39	0	31	0	1	exome+100bp flanks	34834024	8	27	2.296605e-07	7.751042e-07
TCGA-C8-A1HF-01A-11D-A135-09	33	30	3	22	9.090909e-02	1	exome+100bp flanks	34834024	8	21	2.296605e-07	6.028589e-07
TCGA-C8-A1HG-01A-11D-A135-09	45	45	0	28	0	1	exome+100bp flanks	34834024	16	27	4.593210e-07	7.751042e-07
TCGA-C8-A1HI-01A-11D-A135-09	37	36	1	27	2.702703e-02	1	exome+100bp flanks	34834024	9	25	2.583681e-07	7.176891e-07
TCGA-C8-A1HJ-01A-11D-A13L-09	117	115	2	92	1.709402e-02	0	coding only	34834024	21	87	6.028589e-07	2.497558e-06
TCGA-C8-A1HK-01A-21D-A13L-09	50	49	1	40	2.000000e-02	0	coding only	34834024	8	40	2.296605e-07	1.148303e-06
TCGA-C8-A1HL-01A-11D-A135-09	29	29	0	23	0	1	exome+100bp flanks	34834024	5	22	1.435378e-07	6.315664e-07
TCGA-C8-A1HM-01A-12D-A135-09	300	295	5	239	1.666667e-02	0	coding only	34834024	50	226	1.435378e-06	6.487910e-06
TCGA-C8-A1HN-01A-11D-A135-09	49	49	0	37	0	1	exome+100bp flanks	34834024	10	34	2.870756e-07	9.760572e-07
TCGA-C8-A1HO-01A-11D-A13L-09	26	26	0	18	0	1	exome+100bp flanks	34834024	7	18	2.009530e-07	5.167362e-07
TCGA-C8-A26V-01A-11D-A16D-09	75	74	1	57	1.333333e-02	0	coding only	34834024	16	55	4.593210e-07	1.578916e-06
TCGA-C8-A26W-01A-11D-A16D-09	50	50	0	37	0	0	coding only	34834024	12	36	3.444908e-07	1.033472e-06
TCGA-C8-A26X-01A-31D-A16D-09	45	44	1	39	2.222222e-02	1	exome+100bp flanks	34834024	5	38	1.435378e-07	1.090887e-06
TCGA-C8-A26Y-01A-11D-A16D-09	695	684	11	534	1.582734e-02	0	coding only	34834024	137	506	3.932936e-06	1.452603e-05
TCGA-C8-A26Z-01A-11D-A16D-09	42	42	0	36	0	1	exome+100bp flanks	34834024	5	35	1.435378e-07	1.004765e-06
TCGA-C8-A273-01A-11D-A16D-09	18	18	0	12	0	1	exome+100bp flanks	34834024	6	12	1.722454e-07	3.444908e-07
TCGA-C8-A274-01A-11D-A16D-09	192	187	5	143	2.604167e-02	0	coding only	34834024	41	139	1.177010e-06	3.990352e-06
TCGA-C8-A275-01A-21D-A16D-09	121	120	1	92	8.264463e-03	0	coding only	34834024	28	82	8.038118e-07	2.354020e-06
TCGA-C8-A278-01A-11D-A167-09	27	27	0	24	0	1	exome+100bp flanks	34834024	3	23	8.612269e-08	6.602740e-07
TCGA-C8-A27A-01A-11D-A167-09	24	23	1	18	4.166667e-02	1	exome+100bp flanks	34834024	5	17	1.435378e-07	4.880286e-07
TCGA-C8-A27B-01A-11D-A167-09	138	136	2	114	1.449275e-02	0	coding only	34834024	17	106	4.880286e-07	3.043002e-06
TCGA-C8-A3M7-01A-12D-A21Q-09	178	155	23	116	1.292135e-01	1	exome+100bp flanks	34834024	38	114	1.090887e-06	3.272662e-06
TCGA-C8-A3M8-01A-11D-A20S-09	60	50	10	41	1.666667e-01	1	exome+100bp flanks	34834024	8	40	2.296605e-07	1.148303e-06
TCGA-D8-A13Y-01A-11D-A10Y-09	67	66	1	52	1.492537e-02	0	coding only	34834024	14	52	4.019059e-07	1.492793e-06
TCGA-D8-A13Z-01A-11D-A10Y-09	62	62	0	54	0	0	coding only	34834024	7	51	2.009530e-07	1.464086e-06
TCGA-D8-A140-01A-11D-A10Y-09	91	87	4	67	4.395604e-02	1	exome+100bp flanks	34834024	19	63	5.454437e-07	1.808577e-06
TCGA-D8-A141-01A-11D-A10Y-09	17	16	1	13	5.882353e-02	1	exome+100bp flanks	34834024	3	12	8.612269e-08	3.444908e-07
TCGA-D8-A142-01A-11D-A10Y-09	65	64	1	45	1.538462e-02	0	coding only	34834024	18	44	5.167362e-07	1.263133e-06
TCGA-D8-A143-01A-11D-A10Y-09	42	42	0	36	0	1	exome+100bp flanks	34834024	5	34	1.435378e-07	9.760572e-07
TCGA-D8-A145-01A-11D-A10Y-09	27	26	1	19	3.703704e-02	1	exome+100bp flanks	34834024	7	19	2.009530e-07	5.454437e-07
TCGA-D8-A146-01A-31D-A10Y-09	30	30	0	26	0	1	exome+100bp flanks	34834024	4	24	1.148303e-07	6.889816e-07
TCGA-D8-A147-01A-11D-A10Y-09	120	119	1	96	8.333333e-03	0	coding only	34834024	21	89	6.028589e-07	2.554973e-06
TCGA-D8-A1J8-01A-11D-A13L-09	730	724	6	576	8.219178e-03	0	coding only	34834024	141	533	4.047767e-06	1.530113e-05
TCGA-D8-A1J9-01A-11D-A13L-09	168	165	3	120	1.785714e-02	0	coding only	34834024	43	111	1.234425e-06	3.186540e-06
TCGA-D8-A1JA-01A-11D-A13L-09	943	923	20	728	2.120891e-02	0	coding only	34834024	188	687	5.397022e-06	1.972210e-05
TCGA-D8-A1JB-01A-11D-A13L-09	26	25	1	21	3.846154e-02	1	exome+100bp flanks	34834024	3	20	8.612269e-08	5.741513e-07
TCGA-D8-A1JC-01A-11D-A13L-09	80	78	2	60	2.500000e-02	0	coding only	34834024	15	56	4.306135e-07	1.607624e-06
TCGA-D8-A1JD-01A-11D-A13L-09	78	77	1	65	1.282051e-02	0	coding only	34834024	10	61	2.870756e-07	1.751161e-06
TCGA-D8-A1JE-01A-11D-A13L-09	34	33	1	29	2.941176e-02	1	exome+100bp flanks	34834024	2	27	5.741513e-08	7.751042e-07
TCGA-D8-A1JF-01A-11D-A13L-09	43	42	1	35	2.325581e-02	1	exome+100bp flanks	34834024	7	32	2.009530e-07	9.186421e-07
TCGA-D8-A1JG-01B-11D-A13L-09	111	109	2	84	1.801802e-02	0	coding only	34834024	24	79	6.889816e-07	2.267898e-06
TCGA-D8-A1JH-01A-11D-A188-09	18	17	1	14	5.555556e-02	1	exome+100bp flanks	34834024	3	14	8.612269e-08	4.019059e-07
TCGA-D8-A1JI-01A-11D-A13L-09	35	34	1	25	2.857143e-02	1	exome+100bp flanks	34834024	9	24	2.583681e-07	6.889816e-07
TCGA-D8-A1JJ-01A-31D-A14K-09	72	69	3	49	4.166667e-02	1	exome+100bp flanks	34834024	20	41	5.741513e-07	1.177010e-06
TCGA-D8-A1JK-01A-11D-A13L-09	180	175	5	136	2.777778e-02	0	coding only	34834024	37	127	1.062180e-06	3.645861e-06
TCGA-D8-A1JL-01A-11D-A13L-09	107	104	3	76	2.803738e-02	0	coding only	34834024	23	71	6.602740e-07	2.038237e-06
TCGA-D8-A1JM-01A-11D-A13L-09	42	42	0	28	0	1	exome+100bp flanks	34834024	13	26	3.731983e-07	7.463967e-07
TCGA-D8-A1JN-01A-11D-A13L-09	172	168	4	118	2.325581e-02	0	coding only	34834024	48	112	1.377963e-06	3.215247e-06
TCGA-D8-A1JP-01A-11D-A13L-09	108	106	2	84	1.851852e-02	0	coding only	34834024	20	79	5.741513e-07	2.267898e-06
TCGA-D8-A1JS-01A-11D-A13L-09	21	21	0	15	0	1	exome+100bp flanks	34834024	5	15	1.435378e-07	4.306135e-07
TCGA-D8-A1JT-01A-31D-A13L-09	32	32	0	25	0	1	exome+100bp flanks	34834024	6	24	1.722454e-07	6.889816e-07
TCGA-D8-A1JU-01A-11D-A13L-09	12	12	0	8	0	1	exome+100bp flanks	34834024	4	8	1.148303e-07	2.296605e-07
TCGA-D8-A1X5-01A-11D-A14G-09	48	48	0	32	0	1	exome+100bp flanks	34834024	16	32	4.593210e-07	9.186421e-07
TCGA-D8-A1X6-01A-11D-A14K-09	40	39	1	35	2.500000e-02	1	exome+100bp flanks	34834024	4	32	1.148303e-07	9.186421e-07
TCGA-D8-A1X7-01A-11D-A14K-09	25	23	2	20	8.000000e-02	1	exome+100bp flanks	34834024	3	19	8.612269e-08	5.454437e-07
TCGA-D8-A1X8-01A-11D-A14K-09	27	27	0	18	0	1	exome+100bp flanks	34834024	8	17	2.296605e-07	4.880286e-07
TCGA-D8-A1X9-01A-12D-A159-09	89	87	2	69	2.247191e-02	0	coding only	34834024	17	65	4.880286e-07	1.865992e-06
TCGA-D8-A1XA-01A-11D-A14G-09	26	26	0	22	0	1	exome+100bp flanks	34834024	3	22	8.612269e-08	6.315664e-07
TCGA-D8-A1XB-01A-11D-A14G-09	29	29	0	23	0	1	exome+100bp flanks	34834024	5	21	1.435378e-07	6.028589e-07
TCGA-D8-A1XC-01A-11D-A14G-09	29	29	0	24	0	1	exome+100bp flanks	34834024	4	23	1.148303e-07	6.602740e-07
TCGA-D8-A1XF-01A-11D-A14G-09	40	39	1	30	2.500000e-02	1	exome+100bp flanks	34834024	9	30	2.583681e-07	8.612269e-07
TCGA-D8-A1XG-01A-11D-A14G-09	24	24	0	18	0	1	exome+100bp flanks	34834024	5	18	1.435378e-07	5.167362e-07
TCGA-D8-A1XJ-01A-11D-A14K-09	80	77	3	61	3.750000e-02	1	exome+100bp flanks	34834024	14	60	4.019059e-07	1.722454e-06
TCGA-D8-A1XK-01A-21D-A14K-09	940	920	20	723	2.127660e-02	0	coding only	34834024	190	686	5.454437e-06	1.969339e-05
TCGA-D8-A1XL-01A-11D-A14K-09	92	89	3	81	3.260870e-02	1	exome+100bp flanks	34834024	7	79	2.009530e-07	2.267898e-06
TCGA-D8-A1XM-01A-21D-A14K-09	58	53	5	41	8.620690e-02	1	exome+100bp flanks	34834024	11	40	3.157832e-07	1.148303e-06
TCGA-D8-A1XO-01A-11D-A14K-09	18	17	1	11	5.555556e-02	1	exome+100bp flanks	34834024	6	11	1.722454e-07	3.157832e-07
TCGA-D8-A1XQ-01A-11D-A14K-09	727	720	7	569	9.628611e-03	0	coding only	34834024	141	542	4.047767e-06	1.555950e-05
TCGA-D8-A1XR-01A-11D-A14K-09	24	24	0	21	0	1	exome+100bp flanks	34834024	2	21	5.741513e-08	6.028589e-07
TCGA-D8-A1XS-01A-11D-A14K-09	20	20	0	11	0	1	exome+100bp flanks	34834024	8	11	2.296605e-07	3.157832e-07
TCGA-D8-A1XT-01A-11D-A14K-09	46	43	3	34	6.521739e-02	1	exome+100bp flanks	34834024	9	33	2.583681e-07	9.473496e-07
TCGA-D8-A1XU-01A-11D-A14K-09	27	27	0	16	0	1	exome+100bp flanks	34834024	8	14	2.296605e-07	4.019059e-07
TCGA-D8-A1XV-01A-11D-A14K-09	29	29	0	23	0	1	exome+100bp flanks	34834024	6	21	1.722454e-07	6.028589e-07
TCGA-D8-A1XW-01A-11D-A14K-09	89	87	2	69	2.247191e-02	0	coding only	34834024	18	67	5.167362e-07	1.923407e-06
TCGA-D8-A1XY-01A-11D-A14K-09	41	40	1	30	2.439024e-02	1	exome+100bp flanks	34834024	10	27	2.870756e-07	7.751042e-07
TCGA-D8-A1XZ-01A-11D-A14K-09	60	60	0	48	0	0	coding only	34834024	12	43	3.444908e-07	1.234425e-06
TCGA-D8-A1Y0-01A-11D-A14K-09	67	62	5	48	7.462687e-02	1	exome+100bp flanks	34834024	14	46	4.019059e-07	1.320548e-06
TCGA-D8-A1Y1-01A-21D-A14K-09	194	193	1	151	5.154639e-03	0	coding only	34834024	42	139	1.205718e-06	3.990352e-06
TCGA-D8-A1Y2-01A-11D-A159-09	23	22	1	17	4.347826e-02	1	exome+100bp flanks	34834024	5	17	1.435378e-07	4.880286e-07
TCGA-D8-A1Y3-01A-11D-A159-09	53	52	1	39	1.886792e-02	0	coding only	34834024	13	35	3.731983e-07	1.004765e-06
TCGA-D8-A27E-01A-11D-A16D-09	8	8	0	8	0	1	exome+100bp flanks	34834024	0	7	0	2.009530e-07
TCGA-D8-A27F-01A-11D-A16D-09	56	54	2	42	3.571429e-02	1	exome+100bp flanks	34834024	10	40	2.870756e-07	1.148303e-06
TCGA-D8-A27G-01A-11D-A16D-09	974	930	44	746	4.517454e-02	1	exome+100bp flanks	34834024	175	708	5.023824e-06	2.032496e-05
TCGA-D8-A27H-01A-11D-A16D-09	116	114	2	93	1.724138e-02	0	coding only	34834024	19	84	5.454437e-07	2.411435e-06
TCGA-D8-A27I-01A-11D-A16D-09	32	32	0	26	0	1	exome+100bp flanks	34834024	6	25	1.722454e-07	7.176891e-07
TCGA-D8-A27K-01A-11D-A16D-09	22	22	0	18	0	1	exome+100bp flanks	34834024	4	18	1.148303e-07	5.167362e-07
TCGA-D8-A27L-01A-11D-A16D-09	36	35	1	26	2.777778e-02	1	exome+100bp flanks	34834024	8	24	2.296605e-07	6.889816e-07
TCGA-D8-A27M-01A-11D-A16D-09	61	57	4	46	6.557377e-02	1	exome+100bp flanks	34834024	10	42	2.870756e-07	1.205718e-06
TCGA-D8-A27N-01A-11D-A16D-09	46	44	2	37	4.347826e-02	1	exome+100bp flanks	34834024	7	35	2.009530e-07	1.004765e-06
TCGA-D8-A27P-01A-11D-A16D-09	24	23	1	17	4.166667e-02	1	exome+100bp flanks	34834024	6	17	1.722454e-07	4.880286e-07
TCGA-D8-A27R-01A-11D-A16D-09	26	25	1	22	3.846154e-02	1	exome+100bp flanks	34834024	3	19	8.612269e-08	5.454437e-07
TCGA-D8-A27T-01A-11D-A16D-09	22	22	0	18	0	1	exome+100bp flanks	34834024	4	18	1.148303e-07	5.167362e-07
TCGA-D8-A27V-01A-12D-A17D-09	229	215	14	168	6.113537e-02	1	exome+100bp flanks	34834024	43	157	1.234425e-06	4.507088e-06
TCGA-D8-A27W-01A-11D-A16D-09	20	20	0	18	0	1	exome+100bp flanks	34834024	2	18	5.741513e-08	5.167362e-07
TCGA-D8-A3Z5-01A-41D-A243-09	30	23	7	14	2.333333e-01	1	exome+100bp flanks	34834024	7	13	2.009530e-07	3.731983e-07
TCGA-D8-A3Z6-01A-11D-A23C-09	34	32	2	24	5.882353e-02	1	exome+100bp flanks	34834024	7	21	2.009530e-07	6.028589e-07
TCGA-D8-A4Z1-01A-21D-A25Q-09	16	15	1	9	6.250000e-02	1	exome+100bp flanks	34834024	6	9	1.722454e-07	2.583681e-07
TCGA-E2-A105-01A-11D-A10M-09	59	59	0	49	0	0	coding only	34834024	10	47	2.870756e-07	1.349256e-06
TCGA-E2-A107-01A-11D-A10M-09	31	29	2	21	6.451613e-02	1	exome+100bp flanks	34834024	7	19	2.009530e-07	5.454437e-07
TCGA-E2-A108-01A-13D-A10M-09	53	53	0	40	0	0	coding only	34834024	11	37	3.157832e-07	1.062180e-06
TCGA-E2-A109-01A-11D-A10M-09	82	81	1	69	1.219512e-02	0	coding only	34834024	11	67	3.157832e-07	1.923407e-06
TCGA-E2-A10A-01A-21D-A10Y-09	20	20	0	15	0	1	exome+100bp flanks	34834024	5	15	1.435378e-07	4.306135e-07
TCGA-E2-A10B-01A-11D-A10M-09	38	38	0	30	0	1	exome+100bp flanks	34834024	7	30	2.009530e-07	8.612269e-07
TCGA-E2-A10C-01A-21D-A10M-09	355	352	3	274	8.450704e-03	0	coding only	34834024	74	256	2.124360e-06	7.349137e-06
TCGA-E2-A10E-01A-21D-A10M-09	25	25	0	22	0	1	exome+100bp flanks	34834024	3	22	8.612269e-08	6.315664e-07
TCGA-E2-A10F-01A-11D-A10M-09	26	26	0	21	0	1	exome+100bp flanks	34834024	5	20	1.435378e-07	5.741513e-07
TCGA-E2-A14N-01A-31D-A135-09	57	57	0	46	0	0	coding only	34834024	11	45	3.157832e-07	1.291840e-06
TCGA-E2-A14O-01A-31D-A10Y-09	35	34	1	32	2.857143e-02	1	exome+100bp flanks	34834024	2	27	5.741513e-08	7.751042e-07
TCGA-E2-A14P-01A-31D-A12B-09	82	78	4	54	4.878049e-02	1	exome+100bp flanks	34834024	22	51	6.315664e-07	1.464086e-06
TCGA-E2-A14Q-01A-11D-A12B-09	23	22	1	17	4.347826e-02	1	exome+100bp flanks	34834024	5	17	1.435378e-07	4.880286e-07
TCGA-E2-A14R-01A-11D-A10Y-09	105	102	3	88	2.857143e-02	0	coding only	34834024	12	78	3.444908e-07	2.239190e-06
TCGA-E2-A14S-01A-11D-A12B-09	35	32	3	25	8.571429e-02	1	exome+100bp flanks	34834024	6	24	1.722454e-07	6.889816e-07
TCGA-E2-A14T-01A-11D-A10Y-09	32	32	0	26	0	1	exome+100bp flanks	34834024	6	25	1.722454e-07	7.176891e-07
TCGA-E2-A14U-01A-11D-A228-09	20	16	4	11	2.000000e-01	1	exome+100bp flanks	34834024	5	11	1.435378e-07	3.157832e-07
TCGA-E2-A14V-01A-11D-A12B-09	75	73	2	62	2.666667e-02	0	coding only	34834024	11	56	3.157832e-07	1.607624e-06
TCGA-E2-A14W-01A-11D-A12B-09	84	83	1	68	1.190476e-02	0	coding only	34834024	13	63	3.731983e-07	1.808577e-06
TCGA-E2-A14X-01A-11D-A10Y-09	24	24	0	18	0	1	exome+100bp flanks	34834024	6	18	1.722454e-07	5.167362e-07
TCGA-E2-A14Y-01A-21D-A12B-09	35	33	2	26	5.714286e-02	1	exome+100bp flanks	34834024	7	25	2.009530e-07	7.176891e-07
TCGA-E2-A14Z-01A-11D-A10Y-09	63	62	1	44	1.587302e-02	0	coding only	34834024	18	42	5.167362e-07	1.205718e-06
TCGA-E2-A150-01A-11D-A12B-09	47	46	1	37	2.127660e-02	1	exome+100bp flanks	34834024	8	35	2.296605e-07	1.004765e-06
TCGA-E2-A152-01A-11D-A12B-09	121	120	1	97	8.264463e-03	0	coding only	34834024	21	86	6.028589e-07	2.468851e-06
TCGA-E2-A153-01A-12D-A12B-09	23	23	0	18	0	1	exome+100bp flanks	34834024	4	16	1.148303e-07	4.593210e-07
TCGA-E2-A154-01A-11D-A10Y-09	41	41	0	33	0	1	exome+100bp flanks	34834024	8	30	2.296605e-07	8.612269e-07
TCGA-E2-A155-01A-11D-A12B-09	55	54	1	40	1.818182e-02	0	coding only	34834024	14	37	4.019059e-07	1.062180e-06
TCGA-E2-A156-01A-11D-A12B-09	17	17	0	17	0	1	exome+100bp flanks	34834024	0	15	0	4.306135e-07
TCGA-E2-A158-01A-11D-A12B-09	87	85	2	76	2.298851e-02	0	coding only	34834024	9	73	2.583681e-07	2.095652e-06
TCGA-E2-A159-01A-11D-A10Y-09	148	147	1	114	6.756757e-03	0	coding only	34834024	32	110	9.186421e-07	3.157832e-06
TCGA-E2-A15A-01A-11D-A12B-09	40	38	2	36	5.000000e-02	1	exome+100bp flanks	34834024	2	35	5.741513e-08	1.004765e-06
TCGA-E2-A15C-01A-31D-A12B-09	29	28	1	22	3.448276e-02	1	exome+100bp flanks	34834024	6	22	1.722454e-07	6.315664e-07
TCGA-E2-A15D-01A-11D-A10Y-09	28	28	0	26	0	1	exome+100bp flanks	34834024	2	24	5.741513e-08	6.889816e-07
TCGA-E2-A15E-01A-11D-A12B-09	28	28	0	25	0	1	exome+100bp flanks	34834024	3	23	8.612269e-08	6.602740e-07
TCGA-E2-A15F-01A-11D-A10Y-09	22	22	0	19	0	1	exome+100bp flanks	34834024	3	19	8.612269e-08	5.454437e-07
TCGA-E2-A15G-01A-11D-A12B-09	59	58	1	41	1.694915e-02	0	coding only	34834024	17	39	4.880286e-07	1.119595e-06
TCGA-E2-A15H-01A-11D-A12B-09	32	31	1	27	3.125000e-02	1	exome+100bp flanks	34834024	4	26	1.148303e-07	7.463967e-07
TCGA-E2-A15I-01A-21D-A135-09	127	108	19	82	1.496063e-01	1	exome+100bp flanks	34834024	26	78	7.463967e-07	2.239190e-06
TCGA-E2-A15J-01A-11D-A12Q-09	24	24	0	19	0	1	exome+100bp flanks	34834024	5	18	1.435378e-07	5.167362e-07
TCGA-E2-A15K-01A-11D-A12Q-09	40	40	0	33	0	1	exome+100bp flanks	34834024	6	32	1.722454e-07	9.186421e-07
TCGA-E2-A15L-01A-11D-A12B-09	32	31	1	29	3.125000e-02	1	exome+100bp flanks	34834024	2	28	5.741513e-08	8.038118e-07
TCGA-E2-A15M-01A-11D-A12B-09	66	66	0	50	0	0	coding only	34834024	16	50	4.593210e-07	1.435378e-06
TCGA-E2-A15O-01A-11D-A10Y-09	35	33	2	25	5.714286e-02	1	exome+100bp flanks	34834024	7	25	2.009530e-07	7.176891e-07
TCGA-E2-A15P-01A-11D-A10Y-09	45	44	1	39	2.222222e-02	1	exome+100bp flanks	34834024	5	38	1.435378e-07	1.090887e-06
TCGA-E2-A15R-01A-11D-A10Y-09	42	40	2	31	4.761905e-02	1	exome+100bp flanks	34834024	8	29	2.296605e-07	8.325194e-07
TCGA-E2-A15S-01A-11D-A10Y-09	45	45	0	35	0	1	exome+100bp flanks	34834024	10	33	2.870756e-07	9.473496e-07
TCGA-E2-A15T-01A-11D-A10Y-09	43	43	0	33	0	1	exome+100bp flanks	34834024	9	28	2.583681e-07	8.038118e-07
TCGA-E2-A1AZ-01A-11D-A12Q-09	54	52	2	39	3.703704e-02	1	exome+100bp flanks	34834024	13	38	3.731983e-07	1.090887e-06
TCGA-E2-A1B0-01A-11D-A12Q-09	40	40	0	27	0	1	exome+100bp flanks	34834024	12	25	3.444908e-07	7.176891e-07
TCGA-E2-A1B1-01A-21D-A12Q-09	14	14	0	10	0	1	exome+100bp flanks	34834024	4	10	1.148303e-07	2.870756e-07
TCGA-E2-A1B4-01A-11D-A12Q-09	34	31	3	29	8.823529e-02	1	exome+100bp flanks	34834024	2	28	5.741513e-08	8.038118e-07
TCGA-E2-A1B5-01A-21D-A12Q-09	15	15	0	13	0	1	exome+100bp flanks	34834024	2	13	5.741513e-08	3.731983e-07
TCGA-E2-A1B6-01A-31D-A12Q-09	11	10	1	8	9.090909e-02	1	exome+100bp flanks	34834024	1	8	2.870756e-08	2.296605e-07
TCGA-E2-A1BC-01A-11D-A14G-09	34	31	3	24	8.823529e-02	1	exome+100bp flanks	34834024	7	20	2.009530e-07	5.741513e-07
TCGA-E2-A1BD-01A-11D-A12Q-09	29	29	0	24	0	1	exome+100bp flanks	34834024	4	24	1.148303e-07	6.889816e-07
TCGA-E2-A1IE-01A-11D-A188-09	20	18	2	17	1.000000e-01	1	exome+100bp flanks	34834024	1	16	2.870756e-08	4.593210e-07
TCGA-E2-A1IF-01A-11D-A142-09	15	15	0	14	0	1	exome+100bp flanks	34834024	1	13	2.870756e-08	3.731983e-07
TCGA-E2-A1IG-01A-11D-A142-09	41	40	1	31	2.439024e-02	1	exome+100bp flanks	34834024	8	28	2.296605e-07	8.038118e-07
TCGA-E2-A1IH-01A-11D-A188-09	63	63	0	53	0	0	coding only	34834024	9	51	2.583681e-07	1.464086e-06
TCGA-E2-A1II-01A-11D-A142-09	27	27	0	21	0	1	exome+100bp flanks	34834024	6	20	1.722454e-07	5.741513e-07
TCGA-E2-A1IJ-01A-11D-A142-09	19	18	1	17	5.263158e-02	1	exome+100bp flanks	34834024	1	15	2.870756e-08	4.306135e-07
TCGA-E2-A1IK-01A-11D-A17G-09	17	15	2	11	1.176471e-01	1	exome+100bp flanks	34834024	3	11	8.612269e-08	3.157832e-07
TCGA-E2-A1IL-01A-11D-A14G-09	21	21	0	17	0	1	exome+100bp flanks	34834024	3	16	8.612269e-08	4.593210e-07
TCGA-E2-A1IN-01A-11D-A13L-09	194	190	4	140	2.061856e-02	0	coding only	34834024	48	132	1.377963e-06	3.789399e-06
TCGA-E2-A1IO-01A-11D-A142-09	14	14	0	13	0	1	exome+100bp flanks	34834024	1	13	2.870756e-08	3.731983e-07
TCGA-E2-A1IU-01A-11D-A14G-09	24	22	2	16	8.333333e-02	1	exome+100bp flanks	34834024	6	14	1.722454e-07	4.019059e-07
TCGA-E2-A1L6-01A-11D-A13L-09	19	18	1	15	5.263158e-02	1	exome+100bp flanks	34834024	3	15	8.612269e-08	4.306135e-07
TCGA-E2-A1L7-01A-11D-A142-09	65	63	2	56	3.076923e-02	1	exome+100bp flanks	34834024	7	54	2.009530e-07	1.550208e-06
TCGA-E2-A1L8-01A-11D-A13L-09	30	29	1	23	3.333333e-02	1	exome+100bp flanks	34834024	4	21	1.148303e-07	6.028589e-07
TCGA-E2-A1L9-01A-11D-A13L-09	23	23	0	19	0	1	exome+100bp flanks	34834024	4	17	1.148303e-07	4.880286e-07
TCGA-E2-A1LA-01A-11D-A142-09	84	83	1	63	1.190476e-02	0	coding only	34834024	20	58	5.741513e-07	1.665039e-06
TCGA-E2-A1LB-01A-11D-A142-09	40	40	0	31	0	1	exome+100bp flanks	34834024	8	28	2.296605e-07	8.038118e-07
TCGA-E2-A1LE-01A-12D-A19Y-09	82	69	13	55	1.585366e-01	1	exome+100bp flanks	34834024	12	52	3.444908e-07	1.492793e-06
TCGA-E2-A1LG-01A-21D-A14K-09	127	122	5	93	3.937008e-02	1	exome+100bp flanks	34834024	28	89	8.038118e-07	2.554973e-06
TCGA-E2-A1LH-01A-11D-A14G-09	152	151	1	126	6.578947e-03	0	coding only	34834024	25	119	7.176891e-07	3.416200e-06
TCGA-E2-A1LI-01A-12D-A159-09	14	12	2	9	1.428571e-01	1	exome+100bp flanks	34834024	2	9	5.741513e-08	2.583681e-07
TCGA-E2-A1LK-01A-21D-A14G-09	44	42	2	29	4.545455e-02	1	exome+100bp flanks	34834024	13	27	3.731983e-07	7.751042e-07
TCGA-E2-A1LL-01A-11D-A142-09	25	24	1	19	4.000000e-02	1	exome+100bp flanks	34834024	4	17	1.148303e-07	4.880286e-07
TCGA-E2-A1LS-01A-12D-A159-09	74	70	4	57	5.405405e-02	1	exome+100bp flanks	34834024	12	56	3.444908e-07	1.607624e-06
TCGA-E2-A2P5-01A-11D-A19Y-09	105	92	13	71	1.238095e-01	1	exome+100bp flanks	34834024	20	66	5.741513e-07	1.894699e-06
TCGA-E2-A2P6-01A-11D-A19Y-09	165	145	20	101	1.212121e-01	1	exome+100bp flanks	34834024	39	98	1.119595e-06	2.813341e-06
TCGA-E2-A3DX-01A-21D-A20S-09	21	14	7	9	3.333333e-01	2	all capture (no interval list)	65505363	3	8	4.579778e-08	1.221274e-07
TCGA-E2-A56Z-01A-12D-A29N-09	54	51	3	45	5.555556e-02	1	exome+100bp flanks	34834024	6	42	1.722454e-07	1.205718e-06
TCGA-E2-A570-01A-11D-A29N-09	33	28	5	20	1.515152e-01	1	exome+100bp flanks	34834024	8	16	2.296605e-07	4.593210e-07
TCGA-E2-A573-01A-11D-A29N-09	61	55	6	44	9.836066e-02	1	exome+100bp flanks	34834024	10	41	2.870756e-07	1.177010e-06
TCGA-E2-A574-01A-11D-A29N-09	121	109	12	85	9.917355e-02	1	exome+100bp flanks	34834024	22	80	6.315664e-07	2.296605e-06
TCGA-E9-A1N3-01A-12D-A159-09	27	25	2	22	7.407407e-02	1	exome+100bp flanks	34834024	3	22	8.612269e-08	6.315664e-07
TCGA-E9-A1N4-01A-11D-A14K-09	27	26	1	17	3.703704e-02	1	exome+100bp flanks	34834024	8	17	2.296605e-07	4.880286e-07
TCGA-E9-A1N5-01A-11D-A14G-09	30	29	1	24	3.333333e-02	1	exome+100bp flanks	34834024	5	24	1.435378e-07	6.889816e-07
TCGA-E9-A1N8-01A-11D-A142-09	28	25	3	23	1.071429e-01	1	exome+100bp flanks	34834024	2	23	5.741513e-08	6.602740e-07
TCGA-E9-A1N9-01A-11D-A14G-09	50	50	0	42	0	0	coding only	34834024	7	40	2.009530e-07	1.148303e-06
TCGA-E9-A1NA-01A-11D-A142-09	92	90	2	74	2.173913e-02	0	coding only	34834024	16	71	4.593210e-07	2.038237e-06
TCGA-E9-A1NC-01A-12W-A16L-09	111	110	1	99	9.009009e-03	0	coding only	34834024	11	92	3.157832e-07	2.641096e-06
TCGA-E9-A1ND-01A-11D-A142-09	67	65	2	55	2.985075e-02	0	coding only	34834024	10	54	2.870756e-07	1.550208e-06
TCGA-E9-A1NE-01A-21D-A14K-09	34	33	1	31	2.941176e-02	1	exome+100bp flanks	34834024	2	28	5.741513e-08	8.038118e-07
TCGA-E9-A1NF-01A-11D-A14G-09	44	43	1	37	2.272727e-02	1	exome+100bp flanks	34834024	6	33	1.722454e-07	9.473496e-07
TCGA-E9-A1NG-01A-21D-A14K-09	19	17	2	14	1.052632e-01	1	exome+100bp flanks	34834024	3	13	8.612269e-08	3.731983e-07
TCGA-E9-A1NH-01A-11D-A14G-09	27	26	1	19	3.703704e-02	1	exome+100bp flanks	34834024	7	19	2.009530e-07	5.454437e-07
TCGA-E9-A1NI-01A-11W-A16H-09	89	86	3	82	3.370787e-02	1	exome+100bp flanks	34834024	4	77	1.148303e-07	2.210482e-06
TCGA-E9-A1QZ-01A-21D-A167-09	10	9	1	8	1.000000e-01	1	exome+100bp flanks	34834024	1	7	2.870756e-08	2.009530e-07
TCGA-E9-A1R0-01A-22D-A16D-09	25	25	0	19	0	1	exome+100bp flanks	34834024	5	18	1.435378e-07	5.167362e-07
TCGA-E9-A1R2-01A-11D-A14G-09	54	51	3	42	5.555556e-02	1	exome+100bp flanks	34834024	9	37	2.583681e-07	1.062180e-06
TCGA-E9-A1R3-01A-31D-A14K-09	24	24	0	19	0	1	exome+100bp flanks	34834024	4	19	1.148303e-07	5.454437e-07
TCGA-E9-A1R4-01A-21D-A14G-09	97	97	0	77	0	0	coding only	34834024	20	74	5.741513e-07	2.124360e-06
TCGA-E9-A1R5-01A-11D-A14K-09	34	34	0	26	0	1	exome+100bp flanks	34834024	8	26	2.296605e-07	7.463967e-07
TCGA-E9-A1R6-01A-11D-A14G-09	26	26	0	20	0	1	exome+100bp flanks	34834024	6	18	1.722454e-07	5.167362e-07
TCGA-E9-A1R7-01A-11D-A14K-09	53	52	1	39	1.886792e-02	0	coding only	34834024	11	38	3.157832e-07	1.090887e-06
TCGA-E9-A1RA-01A-11D-A14G-09	21	20	1	12	4.761905e-02	1	exome+100bp flanks	34834024	7	12	2.009530e-07	3.444908e-07
TCGA-E9-A1RB-01A-11D-A17G-09	31	29	2	20	6.451613e-02	1	exome+100bp flanks	34834024	8	19	2.296605e-07	5.454437e-07
TCGA-E9-A1RC-01A-11D-A159-09	48	47	1	35	2.083333e-02	1	exome+100bp flanks	34834024	12	33	3.444908e-07	9.473496e-07
TCGA-E9-A1RD-01A-11D-A159-09	25	25	0	19	0	1	exome+100bp flanks	34834024	5	18	1.435378e-07	5.167362e-07
TCGA-E9-A1RE-01A-11D-A159-09	47	45	2	36	4.255319e-02	1	exome+100bp flanks	34834024	9	33	2.583681e-07	9.473496e-07
TCGA-E9-A1RF-01A-11D-A159-09	130	128	2	104	1.538462e-02	0	coding only	34834024	23	97	6.602740e-07	2.784634e-06
TCGA-E9-A1RG-01A-11D-A14G-09	38	38	0	32	0	1	exome+100bp flanks	34834024	6	29	1.722454e-07	8.325194e-07
TCGA-E9-A1RH-01A-21D-A167-09	81	79	2	64	2.469136e-02	0	coding only	34834024	15	60	4.306135e-07	1.722454e-06
TCGA-E9-A1RI-01A-11D-A167-09	16	16	0	8	0	1	exome+100bp flanks	34834024	7	7	2.009530e-07	2.009530e-07
TCGA-E9-A226-01A-21D-A159-09	31	31	0	22	0	1	exome+100bp flanks	34834024	9	22	2.583681e-07	6.315664e-07
TCGA-E9-A227-01A-11D-A159-09	14	13	1	10	7.142857e-02	1	exome+100bp flanks	34834024	3	10	8.612269e-08	2.870756e-07
TCGA-E9-A228-01A-31D-A159-09	42	41	1	30	2.380952e-02	1	exome+100bp flanks	34834024	10	28	2.870756e-07	8.038118e-07
TCGA-E9-A229-01A-31D-A17G-09	21	21	0	14	0	1	exome+100bp flanks	34834024	6	13	1.722454e-07	3.731983e-07
TCGA-E9-A22A-01A-11D-A159-09	29	29	0	23	0	1	exome+100bp flanks	34834024	6	22	1.722454e-07	6.315664e-07
TCGA-E9-A22B-01A-11D-A159-09	52	51	1	39	1.923077e-02	0	coding only	34834024	11	37	3.157832e-07	1.062180e-06
TCGA-E9-A22D-01A-11D-A159-09	19	19	0	14	0	1	exome+100bp flanks	34834024	4	13	1.148303e-07	3.731983e-07
TCGA-E9-A22E-01A-11D-A159-09	85	84	1	67	1.176471e-02	0	coding only	34834024	16	60	4.593210e-07	1.722454e-06
TCGA-E9-A22G-01A-11D-A159-09	101	98	3	77	2.970297e-02	0	coding only	34834024	17	72	4.880286e-07	2.066945e-06
TCGA-E9-A22H-01A-11D-A159-09	19	19	0	18	0	1	exome+100bp flanks	34834024	1	16	2.870756e-08	4.593210e-07
TCGA-E9-A243-01A-21D-A167-09	62	61	1	50	1.612903e-02	0	coding only	34834024	10	47	2.870756e-07	1.349256e-06
TCGA-E9-A244-01A-11D-A167-09	87	83	4	65	4.597701e-02	1	exome+100bp flanks	34834024	18	58	5.167362e-07	1.665039e-06
TCGA-E9-A245-01A-22D-A16D-09	18	18	0	12	0	1	exome+100bp flanks	34834024	5	12	1.435378e-07	3.444908e-07
TCGA-E9-A247-01A-11D-A167-09	33	33	0	28	0	1	exome+100bp flanks	34834024	5	26	1.435378e-07	7.463967e-07
TCGA-E9-A248-01A-11D-A167-09	16	16	0	14	0	1	exome+100bp flanks	34834024	2	13	5.741513e-08	3.731983e-07
TCGA-E9-A249-01A-11D-A167-09	16	16	0	11	0	1	exome+100bp flanks	34834024	5	10	1.435378e-07	2.870756e-07
TCGA-E9-A24A-01A-11D-A167-09	18	18	0	18	0	1	exome+100bp flanks	34834024	0	18	0	5.167362e-07
TCGA-E9-A295-01A-11D-A16D-09	68	68	0	59	0	0	coding only	34834024	9	58	2.583681e-07	1.665039e-06
TCGA-E9-A2JS-01A-11D-A17W-09	77	68	9	52	1.168831e-01	1	exome+100bp flanks	34834024	16	51	4.593210e-07	1.464086e-06
TCGA-E9-A2JT-01A-22D-A18P-09	7	6	1	4	1.428571e-01	1	exome+100bp flanks	34834024	1	3	2.870756e-08	8.612269e-08
TCGA-E9-A3HO-01A-11D-A20S-09	75	67	8	58	1.066667e-01	1	exome+100bp flanks	34834024	8	53	2.296605e-07	1.521501e-06
TCGA-E9-A3Q9-01A-11D-A21Q-09	72	44	28	34	3.888889e-01	2	all capture (no interval list)	65505363	10	30	1.526593e-07	4.579778e-07
TCGA-E9-A3QA-01A-61D-A228-09	68	64	4	50	5.882353e-02	1	exome+100bp flanks	34834024	14	46	4.019059e-07	1.320548e-06
TCGA-E9-A3X8-01A-31D-A22X-09	20	18	2	13	1.000000e-01	1	exome+100bp flanks	34834024	5	13	1.435378e-07	3.731983e-07
TCGA-E9-A54X-01A-11D-A25Q-09	39	33	6	25	1.538462e-01	1	exome+100bp flanks	34834024	7	21	2.009530e-07	6.028589e-07
TCGA-E9-A54Y-01A-11D-A25Q-09	51	42	9	31	1.764706e-01	1	exome+100bp flanks	34834024	11	29	3.157832e-07	8.325194e-07
TCGA-E9-A5FK-01A-11D-A27P-09	18	16	2	13	1.111111e-01	1	exome+100bp flanks	34834024	3	11	8.612269e-08	3.157832e-07
TCGA-E9-A5FL-01A-11D-A27P-09	98	87	11	71	1.122449e-01	1	exome+100bp flanks	34834024	16	68	4.593210e-07	1.952114e-06
TCGA-E9-A5UO-01A-11D-A28B-09	38	33	5	27	1.315789e-01	1	exome+100bp flanks	34834024	5	26	1.435378e-07	7.463967e-07
TCGA-E9-A5UP-01A-11D-A28B-09	39	30	9	24	2.307692e-01	1	exome+100bp flanks	34834024	5	20	1.435378e-07	5.741513e-07
TCGA-EW-A1IW-01A-11D-A13L-09	82	82	0	63	0	0	coding only	34834024	18	59	5.167362e-07	1.693746e-06
TCGA-EW-A1IX-01A-12D-A142-09	22	21	1	18	4.545455e-02	1	exome+100bp flanks	34834024	2	15	5.741513e-08	4.306135e-07
TCGA-EW-A1IY-01A-11D-A188-09	26	26	0	18	0	1	exome+100bp flanks	34834024	8	17	2.296605e-07	4.880286e-07
TCGA-EW-A1IZ-01A-11D-A188-09	321	317	4	240	1.246106e-02	0	coding only	34834024	74	218	2.124360e-06	6.258249e-06
TCGA-EW-A1J1-01A-11D-A188-09	21	21	0	14	0	1	exome+100bp flanks	34834024	6	13	1.722454e-07	3.731983e-07
TCGA-EW-A1J2-01A-21D-A13L-09	29	28	1	22	3.448276e-02	1	exome+100bp flanks	34834024	6	22	1.722454e-07	6.315664e-07
TCGA-EW-A1J3-01A-11D-A13L-09	27	26	1	21	3.703704e-02	1	exome+100bp flanks	34834024	5	20	1.435378e-07	5.741513e-07
TCGA-EW-A1J5-01A-11D-A13L-09	413	407	6	310	1.452785e-02	0	coding only	34834024	92	293	2.641096e-06	8.411316e-06
TCGA-EW-A1J6-01A-11D-A188-09	43	43	0	27	0	1	exome+100bp flanks	34834024	16	26	4.593210e-07	7.463967e-07
TCGA-EW-A1OV-01A-11D-A142-09	92	92	0	71	0	0	coding only	34834024	20	67	5.741513e-07	1.923407e-06
TCGA-EW-A1OX-01A-11D-A142-09	24	23	1	15	4.166667e-02	1	exome+100bp flanks	34834024	6	13	1.722454e-07	3.731983e-07
TCGA-EW-A1OY-01A-11D-A142-09	64	62	2	51	3.125000e-02	1	exome+100bp flanks	34834024	11	47	3.157832e-07	1.349256e-06
TCGA-EW-A1OZ-01A-11D-A142-09	51	49	2	42	3.921569e-02	1	exome+100bp flanks	34834024	7	41	2.009530e-07	1.177010e-06
TCGA-EW-A1P0-01A-11D-A142-09	24	24	0	19	0	1	exome+100bp flanks	34834024	5	17	1.435378e-07	4.880286e-07
TCGA-EW-A1P1-01A-31D-A14G-09	3	3	0	2	0	1	exome+100bp flanks	34834024	1	0	2.870756e-08	0
TCGA-EW-A1P3-01A-11D-A142-09	13	13	0	10	0	1	exome+100bp flanks	34834024	3	9	8.612269e-08	2.583681e-07
TCGA-EW-A1P4-01A-21D-A142-09	59	58	1	48	1.694915e-02	0	coding only	34834024	8	43	2.296605e-07	1.234425e-06
TCGA-EW-A1P5-01A-11D-A142-09	18	17	1	12	5.555556e-02	1	exome+100bp flanks	34834024	5	12	1.435378e-07	3.444908e-07
TCGA-EW-A1P6-01A-11D-A142-09	22	19	3	17	1.363636e-01	1	exome+100bp flanks	34834024	2	17	5.741513e-08	4.880286e-07
TCGA-EW-A1P7-01A-21D-A142-09	8	8	0	6	0	1	exome+100bp flanks	34834024	2	5	5.741513e-08	1.435378e-07
TCGA-EW-A1P8-01A-11D-A142-09	39	38	1	27	2.564103e-02	1	exome+100bp flanks	34834024	9	24	2.583681e-07	6.889816e-07
TCGA-EW-A1PA-01A-11D-A142-09	35	34	1	25	2.857143e-02	1	exome+100bp flanks	34834024	9	25	2.583681e-07	7.176891e-07
TCGA-EW-A1PB-01A-11D-A142-09	138	135	3	110	2.173913e-02	0	coding only	34834024	25	106	7.176891e-07	3.043002e-06
TCGA-EW-A1PC-01B-11D-A21Q-09	149	130	19	100	1.275168e-01	1	exome+100bp flanks	34834024	27	85	7.751042e-07	2.440143e-06
TCGA-EW-A1PD-01A-11D-A142-09	71	70	1	58	1.408451e-02	0	coding only	34834024	12	52	3.444908e-07	1.492793e-06
TCGA-EW-A1PE-01A-11D-A142-09	35	31	4	25	1.142857e-01	1	exome+100bp flanks	34834024	6	23	1.722454e-07	6.602740e-07
TCGA-EW-A1PG-01A-11D-A142-09	6	6	0	6	0	1	exome+100bp flanks	34834024	0	6	0	1.722454e-07
TCGA-EW-A1PH-01A-11D-A14K-09	43	42	1	38	2.325581e-02	1	exome+100bp flanks	34834024	4	37	1.148303e-07	1.062180e-06
TCGA-EW-A2FR-01A-11D-A21Q-09	55	48	7	41	1.272727e-01	1	exome+100bp flanks	34834024	6	38	1.722454e-07	1.090887e-06
TCGA-EW-A2FS-01A-11D-A17D-09	28	28	0	19	0	1	exome+100bp flanks	34834024	9	17	2.583681e-07	4.880286e-07
TCGA-EW-A2FV-01A-11D-A17D-09	22	20	2	17	9.090909e-02	1	exome+100bp flanks	34834024	3	17	8.612269e-08	4.880286e-07
TCGA-EW-A2FW-01A-11D-A17D-09	20	19	1	17	5.000000e-02	1	exome+100bp flanks	34834024	2	17	5.741513e-08	4.880286e-07
TCGA-EW-A3E8-01B-11D-A243-09	101	88	13	71	1.287129e-01	1	exome+100bp flanks	34834024	17	66	4.880286e-07	1.894699e-06
TCGA-EW-A3U0-01A-11D-A228-09	148	132	16	103	1.081081e-01	1	exome+100bp flanks	34834024	29	96	8.325194e-07	2.755926e-06
TCGA-EW-A423-01A-11D-A243-09	70	60	10	38	1.428571e-01	1	exome+100bp flanks	34834024	21	35	6.028589e-07	1.004765e-06
TCGA-GI-A2C8-01A-11D-A16D-09	109	107	2	87	1.834862e-02	0	coding only	34834024	18	82	5.167362e-07	2.354020e-06
TCGA-GI-A2C9-01A-11D-A21Q-09	162	139	23	108	1.419753e-01	1	exome+100bp flanks	34834024	30	101	8.612269e-07	2.899464e-06
TCGA-GM-A2D9-01A-11D-A18P-09	395	391	4	307	1.012658e-02	0	coding only	34834024	82	289	2.354020e-06	8.296486e-06
TCGA-GM-A2DA-01A-11D-A18P-09	33	30	3	20	9.090909e-02	1	exome+100bp flanks	34834024	9	17	2.583681e-07	4.880286e-07
TCGA-GM-A2DB-01A-31D-A19Y-09	97	95	2	84	2.061856e-02	0	coding only	34834024	11	79	3.157832e-07	2.267898e-06
TCGA-GM-A2DC-01A-11D-A18P-09	20	20	0	16	0	1	exome+100bp flanks	34834024	4	14	1.148303e-07	4.019059e-07
TCGA-GM-A2DD-01A-11D-A17W-09	47	45	2	36	4.255319e-02	1	exome+100bp flanks	34834024	9	34	2.583681e-07	9.760572e-07
TCGA-GM-A2DF-01A-11D-A17W-09	34	32	2	26	5.882353e-02	1	exome+100bp flanks	34834024	5	26	1.435378e-07	7.463967e-07
TCGA-GM-A2DH-01A-11D-A17W-09	120	115	5	96	4.166667e-02	1	exome+100bp flanks	34834024	18	86	5.167362e-07	2.468851e-06
TCGA-GM-A2DI-01A-31D-A18P-09	26	26	0	20	0	1	exome+100bp flanks	34834024	6	20	1.722454e-07	5.741513e-07
TCGA-GM-A2DK-01A-21D-A17W-09	24	23	1	15	4.166667e-02	1	exome+100bp flanks	34834024	6	14	1.722454e-07	4.019059e-07
TCGA-GM-A2DL-01A-11D-A18P-09	43	42	1	38	2.325581e-02	1	exome+100bp flanks	34834024	4	36	1.148303e-07	1.033472e-06
TCGA-GM-A2DM-01A-11D-A17W-09	20	19	1	18	5.000000e-02	1	exome+100bp flanks	34834024	1	17	2.870756e-08	4.880286e-07
TCGA-GM-A2DN-01A-11D-A17W-09	21	20	1	17	4.761905e-02	1	exome+100bp flanks	34834024	3	17	8.612269e-08	4.880286e-07
TCGA-GM-A2DO-01A-11D-A19Y-09	93	93	0	72	0	0	coding only	34834024	20	68	5.741513e-07	1.952114e-06
TCGA-GM-A3NW-01A-21D-A228-09	92	85	7	65	7.608696e-02	1	exome+100bp flanks	34834024	16	60	4.593210e-07	1.722454e-06
TCGA-GM-A3NY-01A-11D-A21Q-09	126	75	51	57	4.047619e-01	2	all capture (no interval list)	65505363	15	44	2.289889e-07	6.717007e-07
TCGA-GM-A3XG-01A-31D-A243-09	8	6	2	5	2.500000e-01	1	exome+100bp flanks	34834024	0	4	0	1.148303e-07
TCGA-GM-A3XL-01A-11D-A22X-09	95	86	9	71	9.473684e-02	1	exome+100bp flanks	34834024	13	64	3.731983e-07	1.837284e-06
TCGA-GM-A3XN-01A-12D-A22X-09	26	20	6	14	2.307692e-01	1	exome+100bp flanks	34834024	5	12	1.435378e-07	3.444908e-07
TCGA-GM-A4E0-01A-12D-A25Q-09	29	25	4	20	1.379310e-01	1	exome+100bp flanks	34834024	4	17	1.148303e-07	4.880286e-07
TCGA-GM-A5PV-01A-11D-A28B-09	26	22	4	18	1.538462e-01	1	exome+100bp flanks	34834024	4	17	1.148303e-07	4.880286e-07
TCGA-GM-A5PX-01A-12D-A28B-09	33	29	4	21	1.212121e-01	1	exome+100bp flanks	34834024	8	19	2.296605e-07	5.454437e-07
TCGA-HN-A2NL-01A-11D-A18P-09	72	71	1	57	1.388889e-02	0	coding only	34834024	13	54	3.731983e-07	1.550208e-06
TCGA-HN-A2OB-01A-21D-A27P-09	12	11	1	10	8.333333e-02	1	exome+100bp flanks	34834024	1	10	2.870756e-08	2.870756e-07
TCGA-JL-A3YW-01A-12D-A23C-09	98	83	15	68	1.530612e-01	1	exome+100bp flanks	34834024	15	64	4.306135e-07	1.837284e-06
TCGA-JL-A3YX-01A-11D-A22X-09	41	35	6	29	1.463415e-01	1	exome+100bp flanks	34834024	6	27	1.722454e-07	7.751042e-07
TCGA-LL-A440-01A-11D-A243-09	8	7	1	4	1.250000e-01	1	exome+100bp flanks	34834024	3	4	8.612269e-08	1.148303e-07
TCGA-LL-A441-01A-11D-A243-09	80	72	8	51	1.000000e-01	1	exome+100bp flanks	34834024	17	45	4.880286e-07	1.291840e-06
TCGA-LL-A50Y-01A-11D-A25Q-09	43	38	5	26	1.162791e-01	1	exome+100bp flanks	34834024	12	25	3.444908e-07	7.176891e-07
TCGA-LL-A5YL-01A-12D-A29N-09	78	73	5	55	6.410256e-02	1	exome+100bp flanks	34834024	18	47	5.167362e-07	1.349256e-06
TCGA-LL-A5YM-01A-11D-A28B-09	30	27	3	21	1.000000e-01	1	exome+100bp flanks	34834024	6	17	1.722454e-07	4.880286e-07
TCGA-LL-A5YN-01A-11D-A28B-09	28	25	3	23	1.071429e-01	1	exome+100bp flanks	34834024	2	21	5.741513e-08	6.028589e-07
TCGA-LL-A5YO-01A-21D-A28B-09	39	37	2	31	5.128205e-02	1	exome+100bp flanks	34834024	6	30	1.722454e-07	8.612269e-07
TCGA-LL-A5YP-01A-21D-A28B-09	94	80	14	67	1.489362e-01	1	exome+100bp flanks	34834024	12	61	3.444908e-07	1.751161e-06
TCGA-LQ-A4E4-01A-11D-A25Q-09	97	85	12	64	1.237113e-01	1	exome+100bp flanks	34834024	21	51	6.028589e-07	1.464086e-06
TCGA-MS-A51U-01A-31D-A25Q-09	19	15	4	11	2.105263e-01	1	exome+100bp flanks	34834024	4	11	1.148303e-07	3.157832e-07
TCGA-OK-A5Q2-01A-11D-A27P-09	32	28	4	24	1.250000e-01	1	exome+100bp flanks	34834024	4	23	1.148303e-07	6.602740e-07
TCGA-OL-A5D6-01A-21D-A27P-09	42	40	2	32	4.761905e-02	1	exome+100bp flanks	34834024	7	32	2.009530e-07	9.186421e-07
TCGA-OL-A5D7-01A-11D-A27P-09	59	53	6	41	1.016949e-01	1	exome+100bp flanks	34834024	11	38	3.157832e-07	1.090887e-06
TCGA-OL-A5D8-01A-11D-A27P-09	35	34	1	27	2.857143e-02	1	exome+100bp flanks	34834024	5	26	1.435378e-07	7.463967e-07
TCGA-OL-A5DA-01A-11D-A27P-09	65	59	6	44	9.230769e-02	1	exome+100bp flanks	34834024	14	41	4.019059e-07	1.177010e-06
TCGA-OL-A5RU-01A-11D-A28B-09	29	25	4	22	1.379310e-01	1	exome+100bp flanks	34834024	3	21	8.612269e-08	6.028589e-07
TCGA-OL-A5RV-01A-12D-A28B-09	17	13	4	11	2.352941e-01	1	exome+100bp flanks	34834024	2	11	5.741513e-08	3.157832e-07
TCGA-OL-A5RW-01A-11D-A28B-09	172	153	19	123	1.104651e-01	1	exome+100bp flanks	34834024	28	118	8.038118e-07	3.387493e-06
TCGA-OL-A5RX-01A-11D-A28B-09	30	28	2	22	6.666667e-02	1	exome+100bp flanks	34834024	6	21	1.722454e-07	6.028589e-07
TCGA-OL-A5RY-01A-21D-A28B-09	13	10	3	8	2.307692e-01	1	exome+100bp flanks	34834024	2	7	5.741513e-08	2.009530e-07
TCGA-OL-A5RZ-01A-11D-A28B-09	118	110	8	83	6.779661e-02	1	exome+100bp flanks	34834024	24	82	6.889816e-07	2.354020e-06
TCGA-OL-A5S0-01A-11D-A28B-09	43	37	6	31	1.395349e-01	1	exome+100bp flanks	34834024	6	28	1.722454e-07	8.038118e-07
TCGA-OL-A66H-01A-11D-A29N-09	26	25	1	19	3.846154e-02	1	exome+100bp flanks	34834024	6	17	1.722454e-07	4.880286e-07
TCGA-OL-A66I-01A-21D-A29N-09	40	38	2	29	5.000000e-02	1	exome+100bp flanks	34834024	9	28	2.583681e-07	8.038118e-07
TCGA-OL-A66J-01A-11D-A29N-09	62	57	5	49	8.064516e-02	1	exome+100bp flanks	34834024	8	46	2.296605e-07	1.320548e-06
TCGA-OL-A66K-01A-11D-A29N-09	32	30	2	23	6.250000e-02	1	exome+100bp flanks	34834024	7	21	2.009530e-07	6.028589e-07
TCGA-PE-A5DC-01A-12D-A27P-09	128	115	13	85	1.015625e-01	1	exome+100bp flanks	34834024	28	80	8.038118e-07	2.296605e-06
TCGA-PE-A5DD-01A-12D-A27P-09	65	57	8	43	1.230769e-01	1	exome+100bp flanks	34834024	14	38	4.019059e-07	1.090887e-06
TCGA-PE-A5DE-01A-11D-A27P-09	433	394	39	292	9.006928e-02	1	exome+100bp flanks	34834024	94	273	2.698511e-06	7.837165e-06