Clinical Features	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1p31.3	67 (33%)	139	0.090919	1	0.52312	1	0.2324	1	0.099889	1	0.60721	1	0.14705	1	0.9822	1	0.04604	1
amp_1q21.3	108 (52%)	98	0.00134	0.547	0.2891	1	0.19107	1	0.35824	1	0.92195	1	0.54575	1	0.85061	1	0.082489	1
amp_2p24.3	54 (26%)	152	0.03028	1	0.0321	1	0.19878	1	0.14039	1	0.28043	1	0.01362	1	0.35748	1	0.01933	1
amp_2q32.3	36 (17%)	170	4e-05	0.0175	0.0071599	1	0.00166	0.667	0.01291	1	0.11583	1	0.1063	1	0.31488	1	0.26231	1
amp_3q26.31	160 (78%)	46	9.9999e-06	0.00456	0.00011	0.0475	0.00247	0.971	0.00035	0.149	0.03322	1	0.00078999	0.327	0.01129	1	3e-05	0.0132
amp_3q28	160 (78%)	46	9.9999e-06	0.00456	4e-05	0.0175	0.00195	0.772	0.00058999	0.247	0.02612	1	0.00041	0.173	0.0098399	1	3e-05	0.0132
amp_4q12	14 (7%)	192	0.93509	1	0.04814	1	0.77441	1	0.32331	1	0.34257	1	0.2233	1	0.30343	1	0.5347	1
amp_5p15.33	88 (43%)	118	9.9999e-06	0.00456	0.057509	1	0.02476	1	0.10419	1	0.03196	1	0.003	1	0.00448	1	0.31156	1
amp_6p21.33	56 (27%)	150	0.0252	1	0.01126	1	0.00351	1	0.02014	1	0.35393	1	0.12793	1	0.68247	1	0.04052	1
amp_7p11.2	34 (17%)	172	2e-05	0.00888	0.02662	1	0.00282	1	0.03381	1	0.0073999	1	0.083299	1	0.0053399	1	0.41252	1
amp_8q24.21	84 (41%)	122	0.38607	1	0.38835	1	0.60284	1	0.27152	1	0.01721	1	0.83245	1	0.17168	1	0.15005	1
amp_9p24.1	43 (21%)	163	0.02525	1	0.62319	1	0.77722	1	0.26133	1	0.93202	1	0.4635	1	0.97602	1	0.82643	1
amp_11p13	18 (9%)	188	0.11846	1	0.86101	1	0.70015	1	0.25132	1	0.4529	1	0.73848	1	0.47535	1	0.44593	1
amp_11q13.3	24 (12%)	182	0.01195	1	0.03056	1	0.00451	1	3e-05	0.0132	0.11404	1	0.25345	1	0.17211	1	0.00373	1
amp_11q22.1	35 (17%)	171	2e-05	0.00888	9.9999e-06	0.00456	3e-05	0.0132	9.9999e-06	0.00456	0.0145	1	0.058619	1	0.00065999	0.276	9.9999e-06	0.00456
amp_13q22.1	45 (22%)	161	0.03713	1	0.01345	1	0.95297	1	0.99352	1	0.22236	1	0.22513	1	0.22984	1	0.10606	1
amp_15q26.1	50 (24%)	156	0.83014	1	0.41653	1	0.83203	1	0.78371	1	0.41468	1	1	1	0.69166	1	0.81141	1
amp_16p13.13	43 (21%)	163	0.29683	1	0.4512	1	0.67964	1	0.28897	1	0.37698	1	0.21063	1	0.25697	1	0.36372	1
amp_17q12	38 (18%)	168	0.0424	1	0.01616	1	0.01178	1	0.04591	1	0.10799	1	0.02574	1	0.28801	1	0.29117	1
amp_17q25.1	56 (27%)	150	0.00017	0.0733	0.077199	1	0.10149	1	0.1015	1	0.03229	1	0.25241	1	0.057409	1	0.737	1
amp_19q13.2	62 (30%)	144	9.9999e-06	0.00456	0.04761	1	0.19174	1	0.16989	1	0.28245	1	0.30638	1	0.44938	1	0.56491	1
amp_20q11.21	92 (45%)	114	0.00387	1	0.054819	1	0.24943	1	0.080259	1	0.28009	1	0.01096	1	0.12539	1	0.37259	1
amp_xq28	50 (24%)	156	0.93423	1	0.43627	1	0.31068	1	0.68516	1	0.0082499	1	0.12586	1	0.0093799	1	0.69554	1
del_1p36.31	26 (13%)	180	0.02789	1	0.14488	1	0.0061599	1	0.00298	1	0.43422	1	0.00173	0.692	0.03953	1	0.01287	1
del_1p13.2	22 (11%)	184	0.066269	1	0.01804	1	0.00269	1	0.25417	1	0.14122	1	0.22102	1	0.03187	1	0.11452	1
del_2q22.1	41 (20%)	165	0.26055	1	0.94194	1	0.76639	1	0.6014	1	0.90517	1	0.47828	1	0.4839	1	0.87327	1
del_2q37.1	87 (42%)	119	0.0050699	1	0.0092099	1	0.00032	0.137	0.00028	0.12	0.01177	1	0.00345	1	0.00154	0.627	0.0052599	1
del_2q37.3	84 (41%)	122	0.00169	0.678	0.01435	1	0.00036	0.153	0.00038	0.161	0.01486	1	0.00304	1	0.00249	0.976	0.0037	1
del_3p14.2	87 (42%)	119	0.00043	0.181	0.00078999	0.327	0.02803	1	0.00125	0.511	0.0082599	1	0.00185	0.734	0.0248	1	0.00226	0.893
del_4q21.3	66 (32%)	140	9.9999e-06	0.00456	0.42705	1	0.29117	1	0.0054699	1	0.41921	1	0.11292	1	0.45222	1	0.1448	1
del_4q22.1	63 (31%)	143	9.9999e-06	0.00456	0.55872	1	0.1504	1	0.00437	1	0.38527	1	0.15124	1	0.84525	1	0.03043	1
del_4q35.2	76 (37%)	130	9.9999e-06	0.00456	0.36482	1	0.04752	1	0.0018	0.718	0.34646	1	0.22602	1	0.788	1	0.02235	1
del_5q22.3	52 (25%)	154	0.0044	1	0.67832	1	0.44896	1	0.37542	1	0.25637	1	0.26987	1	0.16424	1	0.00349	1
del_5q35.2	53 (26%)	153	0.00426	1	0.96663	1	0.56725	1	0.91427	1	0.063189	1	0.49857	1	0.03078	1	0.01833	1
del_6p24.2	30 (15%)	176	0.9668	1	0.22495	1	0.080779	1	0.68479	1	0.428	1	0.24014	1	0.7722	1	0.80937	1
del_6q26	70 (34%)	136	0.00271	1	0.28792	1	0.34361	1	0.51076	1	0.39925	1	0.61866	1	0.29283	1	0.48449	1
del_7q34	45 (22%)	161	0.00439	1	0.37943	1	0.43164	1	0.65293	1	0.34781	1	0.56481	1	0.44178	1	0.17551	1
del_8p23.3	73 (35%)	133	0.00156	0.632	0.072339	1	0.02383	1	0.6341	1	0.60164	1	0.82356	1	0.75525	1	0.59258	1
del_10q23.31	60 (29%)	146	0.00259	1	0.46932	1	0.68171	1	0.6334	1	0.98044	1	0.80611	1	1	1	0.95492	1
del_11p15.1	68 (33%)	138	0.10306	1	0.053389	1	0.091249	1	0.03156	1	0.072139	1	0.071129	1	0.25712	1	0.097499	1
del_11q25	115 (56%)	91	2e-05	0.00888	0.062479	1	0.072569	1	0.04264	1	0.23385	1	0.03006	1	0.4898	1	0.00363	1
del_13q12.11	73 (35%)	133	0.04208	1	0.02446	1	0.00070999	0.295	0.01018	1	0.051069	1	0.00295	1	0.077389	1	0.061069	1
del_13q14.2	81 (39%)	125	0.02761	1	0.01059	1	0.00229	0.902	0.0128	1	0.03849	1	0.00429	1	0.10008	1	0.060129	1
del_14q32.31	32 (16%)	174	0.0071699	1	0.41713	1	0.00494	1	0.00155	0.629	0.13815	1	0.51118	1	0.02805	1	0.30199	1
del_15q21.1	40 (19%)	166	0.0186	1	0.092579	1	0.02934	1	0.14636	1	0.10739	1	0.14415	1	0.23569	1	0.52563	1
del_16q12.1	41 (20%)	165	0.38152	1	0.0498	1	0.15759	1	0.37161	1	0.16758	1	0.01915	1	0.059999	1	0.01877	1
del_16q23.1	41 (20%)	165	0.40099	1	0.0076799	1	0.0063399	1	0.04233	1	0.23894	1	0.00156	0.632	0.03633	1	0.0056899	1
del_17p12	68 (33%)	138	0.00165	0.665	0.34601	1	0.20259	1	0.04547	1	0.063049	1	0.19972	1	0.1207	1	0.2553	1
del_17q25.3	35 (17%)	171	0.14072	1	0.0074299	1	9.9999e-06	0.00456	0.00088999	0.367	8.9999e-05	0.0391	0.00407	1	0.00019	0.0817	0.02543	1
del_18q21.2	57 (28%)	149	0.00388	1	4e-05	0.0175	9.9999e-06	0.00456	0.00022	0.0944	0.058699	1	0.00315	1	0.01625	1	9.9999e-05	0.0433
del_19p13.3	63 (31%)	143	0.00067999	0.284	0.00047	0.197	0.00118	0.485	0.00122	0.5	0.069859	1	0.03076	1	0.26684	1	0.0018	0.718
del_19q13.33	25 (12%)	181	0.16397	1	0.29469	1	0.26572	1	0.51244	1	0.25801	1	0.63407	1	0.44176	1	0.64998	1
del_20p12.1	27 (13%)	179	0.96496	1	0.24718	1	0.6153	1	1	1	0.3162	1	0.65237	1	0.41723	1	0.071309	1
del_21q11.2	40 (19%)	166	0.0054499	1	0.17149	1	0.29654	1	0.0092399	1	0.88172	1	0.71097	1	0.63549	1	0.1572	1
del_22q13.32	57 (28%)	149	0.12245	1	0.26777	1	0.40073	1	0.28963	1	0.85215	1	0.67709	1	0.88656	1	0.6182	1
del_xp11.3	49 (24%)	157	0.00338	1	0.0052399	1	0.04072	1	0.04766	1	0.00033	0.141	0.02907	1	0.00068999	0.287	0.01803	1
del_xq21.33	43 (21%)	163	0.231	1	0.01403	1	0.16118	1	0.052909	1	0.093129	1	0.10065	1	0.24142	1	0.0084699	1