This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.
Testing the association between mutation status of 27 genes and 9 molecular subtypes across 154 patients, 11 significant findings detected with P value < 0.05 and Q value < 0.25.
-
TP53 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
-
BRAF mutation correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
-
CASP8 mutation correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
-
MIER3 mutation correlated to 'MRNA_CNMF'.
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
CN CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
||
nMutated (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
BRAF | 20 (13%) | 134 |
1e-05 (0.0023) |
1e-05 (0.0023) |
4e-05 (0.00892) |
0.722 (1.00) |
0.525 (1.00) |
0.0114 (1.00) |
1e-05 (0.0023) |
0.462 (1.00) |
0.0394 (1.00) |
CASP8 | 10 (6%) | 144 |
0.00049 (0.109) |
3e-05 (0.00672) |
0.00109 (0.24) |
0.0158 (1.00) |
0.15 (1.00) |
0.0358 (1.00) |
2e-05 (0.0045) |
1 (1.00) |
0.0761 (1.00) |
TP53 | 73 (47%) | 81 |
0.00457 (0.964) |
0.00334 (0.721) |
1e-05 (0.0023) |
0.2 (1.00) |
0.736 (1.00) |
1e-05 (0.0023) |
0.00118 (0.258) |
0.621 (1.00) |
0.494 (1.00) |
MIER3 | 10 (6%) | 144 |
0.00106 (0.234) |
0.00487 (1.00) |
0.00496 (1.00) |
0.772 (1.00) |
0.782 (1.00) |
0.945 (1.00) |
0.0116 (1.00) |
1 (1.00) |
0.175 (1.00) |
APC | 107 (69%) | 47 |
0.136 (1.00) |
0.00648 (1.00) |
0.0402 (1.00) |
0.161 (1.00) |
0.219 (1.00) |
0.889 (1.00) |
0.012 (1.00) |
1 (1.00) |
0.868 (1.00) |
KRAS | 59 (38%) | 95 |
0.0331 (1.00) |
0.00802 (1.00) |
0.0793 (1.00) |
0.718 (1.00) |
0.992 (1.00) |
0.302 (1.00) |
0.722 (1.00) |
0.631 (1.00) |
0.526 (1.00) |
NRAS | 15 (10%) | 139 |
0.0771 (1.00) |
0.0921 (1.00) |
0.783 (1.00) |
0.468 (1.00) |
0.955 (1.00) |
0.15 (1.00) |
0.734 (1.00) |
1 (1.00) |
1 (1.00) |
SMAD4 | 18 (12%) | 136 |
0.303 (1.00) |
0.227 (1.00) |
0.0211 (1.00) |
0.852 (1.00) |
0.569 (1.00) |
0.603 (1.00) |
0.515 (1.00) |
1 (1.00) |
0.866 (1.00) |
FBXW7 | 29 (19%) | 125 |
0.228 (1.00) |
0.0559 (1.00) |
0.00261 (0.566) |
0.00342 (0.735) |
0.194 (1.00) |
0.152 (1.00) |
0.00434 (0.92) |
1 (1.00) |
0.182 (1.00) |
SMAD2 | 10 (6%) | 144 |
0.099 (1.00) |
0.109 (1.00) |
0.0278 (1.00) |
1 (1.00) |
0.941 (1.00) |
0.193 (1.00) |
0.805 (1.00) |
1 (1.00) |
1 (1.00) |
FAM123B | 19 (12%) | 135 |
0.208 (1.00) |
0.184 (1.00) |
0.0264 (1.00) |
0.285 (1.00) |
0.189 (1.00) |
0.179 (1.00) |
0.35 (1.00) |
0.425 (1.00) |
0.416 (1.00) |
MGC42105 | 10 (6%) | 144 |
0.00432 (0.92) |
0.14 (1.00) |
0.252 (1.00) |
0.411 (1.00) |
0.174 (1.00) |
0.476 (1.00) |
0.194 (1.00) |
1 (1.00) |
0.594 (1.00) |
ACVR1B | 13 (8%) | 141 |
0.366 (1.00) |
0.158 (1.00) |
0.0167 (1.00) |
0.701 (1.00) |
0.432 (1.00) |
0.147 (1.00) |
0.103 (1.00) |
1 (1.00) |
0.373 (1.00) |
DNMT1 | 12 (8%) | 142 |
0.0292 (1.00) |
0.00783 (1.00) |
0.0879 (1.00) |
0.0512 (1.00) |
0.348 (1.00) |
0.0388 (1.00) |
0.0105 (1.00) |
1 (1.00) |
0.00423 (0.905) |
PCBP1 | 4 (3%) | 150 |
0.329 (1.00) |
0.434 (1.00) |
0.297 (1.00) |
0.818 (1.00) |
0.637 (1.00) |
1 (1.00) |
0.602 (1.00) |
||
CDC27 | 10 (6%) | 144 |
0.0025 (0.545) |
0.0734 (1.00) |
0.00711 (1.00) |
1 (1.00) |
0.955 (1.00) |
0.436 (1.00) |
0.0197 (1.00) |
0.186 (1.00) |
0.0139 (1.00) |
PIK3CA | 26 (17%) | 128 |
0.331 (1.00) |
0.582 (1.00) |
0.0149 (1.00) |
0.12 (1.00) |
0.857 (1.00) |
0.0389 (1.00) |
0.562 (1.00) |
0.514 (1.00) |
0.229 (1.00) |
BCOR | 6 (4%) | 148 |
0.0346 (1.00) |
0.0545 (1.00) |
0.244 (1.00) |
0.2 (1.00) |
0.601 (1.00) |
0.631 (1.00) |
0.12 (1.00) |
1 (1.00) |
0.0965 (1.00) |
ZHX2 | 8 (5%) | 146 |
0.217 (1.00) |
0.228 (1.00) |
0.171 (1.00) |
0.23 (1.00) |
0.577 (1.00) |
0.919 (1.00) |
0.0848 (1.00) |
1 (1.00) |
0.196 (1.00) |
KLHL5 | 5 (3%) | 149 |
0.373 (1.00) |
0.297 (1.00) |
0.421 (1.00) |
0.222 (1.00) |
0.875 (1.00) |
0.632 (1.00) |
1 (1.00) |
1 (1.00) |
0.16 (1.00) |
PCDHGB1 | 7 (5%) | 147 |
0.109 (1.00) |
0.267 (1.00) |
0.144 (1.00) |
0.43 (1.00) |
1 (1.00) |
0.618 (1.00) |
0.52 (1.00) |
1 (1.00) |
0.196 (1.00) |
UBXN11 | 3 (2%) | 151 |
0.326 (1.00) |
0.201 (1.00) |
0.0558 (1.00) |
1 (1.00) |
0.604 (1.00) |
||||
TBC1D10C | 3 (2%) | 151 |
0.237 (1.00) |
0.13 (1.00) |
0.783 (1.00) |
0.133 (1.00) |
0.24 (1.00) |
1 (1.00) |
0.603 (1.00) |
||
TCF7L2 | 11 (7%) | 143 |
0.218 (1.00) |
1 (1.00) |
0.151 (1.00) |
0.949 (1.00) |
0.86 (1.00) |
0.672 (1.00) |
1 (1.00) |
1 (1.00) |
0.319 (1.00) |
PCDHGA9 | 5 (3%) | 149 |
0.372 (1.00) |
0.422 (1.00) |
0.425 (1.00) |
0.65 (1.00) |
0.385 (1.00) |
0.115 (1.00) |
0.259 (1.00) |
1 (1.00) |
1 (1.00) |
PCDHGA7 | 5 (3%) | 149 |
0.7 (1.00) |
0.848 (1.00) |
0.0449 (1.00) |
1 (1.00) |
0.665 (1.00) |
1 (1.00) |
0.36 (1.00) |
||
KLK2 | 3 (2%) | 151 |
0.417 (1.00) |
0.131 (1.00) |
0.784 (1.00) |
0.721 (1.00) |
0.24 (1.00) |
1 (1.00) |
P value = 0.136 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 57 | 28 | 22 |
APC MUTATED | 18 | 42 | 21 | 17 |
APC WILD-TYPE | 16 | 15 | 7 | 5 |
P value = 0.00648 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 69 | 30 |
APC MUTATED | 22 | 50 | 26 |
APC WILD-TYPE | 20 | 19 | 4 |
P value = 0.0402 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 11 | 64 | 61 | 16 |
APC MUTATED | 9 | 50 | 34 | 12 |
APC WILD-TYPE | 2 | 14 | 27 | 4 |
P value = 0.161 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 47 | 18 | 16 |
APC MUTATED | 20 | 29 | 12 | 10 |
APC WILD-TYPE | 3 | 18 | 6 | 6 |
P value = 0.219 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 9 | 32 | 6 | 36 | 13 | 8 |
APC MUTATED | 9 | 20 | 3 | 26 | 8 | 5 |
APC WILD-TYPE | 0 | 12 | 3 | 10 | 5 | 3 |
P value = 0.889 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 20 | 4 | 20 | 100 |
APC MUTATED | 7 | 14 | 3 | 13 | 68 |
APC WILD-TYPE | 1 | 6 | 1 | 7 | 32 |
P value = 0.012 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 1 | 4 | 1 | 111 | 35 |
APC MUTATED | 1 | 2 | 0 | 84 | 18 |
APC WILD-TYPE | 0 | 2 | 1 | 27 | 17 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_2 | CLUS_3 |
---|---|---|
ALL | 4 | 137 |
APC MUTATED | 3 | 95 |
APC WILD-TYPE | 1 | 42 |
P value = 0.868 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_3 | CLUS_4 |
---|---|---|---|
ALL | 4 | 36 | 101 |
APC MUTATED | 3 | 24 | 71 |
APC WILD-TYPE | 1 | 12 | 30 |
P value = 0.00457 (Fisher's exact test), Q value = 0.96
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 57 | 28 | 22 |
TP53 MUTATED | 12 | 38 | 9 | 10 |
TP53 WILD-TYPE | 22 | 19 | 19 | 12 |
P value = 0.00334 (Fisher's exact test), Q value = 0.72
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 69 | 30 |
TP53 MUTATED | 12 | 37 | 20 |
TP53 WILD-TYPE | 30 | 32 | 10 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 11 | 64 | 61 | 16 |
TP53 MUTATED | 4 | 47 | 11 | 10 |
TP53 WILD-TYPE | 7 | 17 | 50 | 6 |
P value = 0.2 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 47 | 18 | 16 |
TP53 MUTATED | 7 | 24 | 8 | 4 |
TP53 WILD-TYPE | 16 | 23 | 10 | 12 |
P value = 0.736 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 9 | 32 | 6 | 36 | 13 | 8 |
TP53 MUTATED | 3 | 14 | 3 | 17 | 3 | 3 |
TP53 WILD-TYPE | 6 | 18 | 3 | 19 | 10 | 5 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 20 | 4 | 20 | 100 |
TP53 MUTATED | 3 | 12 | 0 | 1 | 56 |
TP53 WILD-TYPE | 5 | 8 | 4 | 19 | 44 |
P value = 0.00118 (Fisher's exact test), Q value = 0.26
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 1 | 4 | 1 | 111 | 35 |
TP53 MUTATED | 0 | 3 | 0 | 61 | 8 |
TP53 WILD-TYPE | 1 | 1 | 1 | 50 | 27 |
P value = 0.621 (Fisher's exact test), Q value = 1
nPatients | CLUS_2 | CLUS_3 |
---|---|---|
ALL | 4 | 137 |
TP53 MUTATED | 1 | 67 |
TP53 WILD-TYPE | 3 | 70 |
P value = 0.494 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_3 | CLUS_4 |
---|---|---|---|
ALL | 4 | 36 | 101 |
TP53 MUTATED | 3 | 16 | 49 |
TP53 WILD-TYPE | 1 | 20 | 52 |
P value = 0.0331 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 57 | 28 | 22 |
KRAS MUTATED | 10 | 17 | 17 | 7 |
KRAS WILD-TYPE | 24 | 40 | 11 | 15 |
P value = 0.00802 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 69 | 30 |
KRAS MUTATED | 16 | 31 | 4 |
KRAS WILD-TYPE | 26 | 38 | 26 |
P value = 0.0793 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 11 | 64 | 61 | 16 |
KRAS MUTATED | 8 | 20 | 24 | 6 |
KRAS WILD-TYPE | 3 | 44 | 37 | 10 |
P value = 0.718 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 47 | 18 | 16 |
KRAS MUTATED | 9 | 22 | 6 | 8 |
KRAS WILD-TYPE | 14 | 25 | 12 | 8 |
P value = 0.992 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 9 | 32 | 6 | 36 | 13 | 8 |
KRAS MUTATED | 4 | 13 | 3 | 16 | 5 | 4 |
KRAS WILD-TYPE | 5 | 19 | 3 | 20 | 8 | 4 |
P value = 0.302 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 20 | 4 | 20 | 100 |
KRAS MUTATED | 2 | 5 | 2 | 11 | 37 |
KRAS WILD-TYPE | 6 | 15 | 2 | 9 | 63 |
P value = 0.722 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 1 | 4 | 1 | 111 | 35 |
KRAS MUTATED | 1 | 2 | 0 | 41 | 13 |
KRAS WILD-TYPE | 0 | 2 | 1 | 70 | 22 |
P value = 0.631 (Fisher's exact test), Q value = 1
nPatients | CLUS_2 | CLUS_3 |
---|---|---|
ALL | 4 | 137 |
KRAS MUTATED | 2 | 51 |
KRAS WILD-TYPE | 2 | 86 |
P value = 0.526 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_3 | CLUS_4 |
---|---|---|---|
ALL | 4 | 36 | 101 |
KRAS MUTATED | 1 | 11 | 41 |
KRAS WILD-TYPE | 3 | 25 | 60 |
P value = 0.0771 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 57 | 28 | 22 |
NRAS MUTATED | 0 | 8 | 4 | 2 |
NRAS WILD-TYPE | 34 | 49 | 24 | 20 |
P value = 0.0921 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 69 | 30 |
NRAS MUTATED | 2 | 11 | 1 |
NRAS WILD-TYPE | 40 | 58 | 29 |
P value = 0.783 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 11 | 64 | 61 | 16 |
NRAS MUTATED | 0 | 8 | 6 | 1 |
NRAS WILD-TYPE | 11 | 56 | 55 | 15 |
P value = 0.468 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 47 | 18 | 16 |
NRAS MUTATED | 1 | 8 | 1 | 2 |
NRAS WILD-TYPE | 22 | 39 | 17 | 14 |
P value = 0.955 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 9 | 32 | 6 | 36 | 13 | 8 |
NRAS MUTATED | 1 | 4 | 0 | 5 | 2 | 0 |
NRAS WILD-TYPE | 8 | 28 | 6 | 31 | 11 | 8 |
P value = 0.15 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 20 | 4 | 20 | 100 |
NRAS MUTATED | 2 | 3 | 0 | 3 | 6 |
NRAS WILD-TYPE | 6 | 17 | 4 | 17 | 94 |
P value = 0.734 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 1 | 4 | 1 | 111 | 35 |
NRAS MUTATED | 0 | 0 | 0 | 12 | 2 |
NRAS WILD-TYPE | 1 | 4 | 1 | 99 | 33 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_2 | CLUS_3 |
---|---|---|
ALL | 4 | 137 |
NRAS MUTATED | 0 | 13 |
NRAS WILD-TYPE | 4 | 124 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_3 | CLUS_4 |
---|---|---|---|
ALL | 4 | 36 | 101 |
NRAS MUTATED | 0 | 3 | 10 |
NRAS WILD-TYPE | 4 | 33 | 91 |
P value = 0.303 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 57 | 28 | 22 |
SMAD4 MUTATED | 6 | 4 | 5 | 2 |
SMAD4 WILD-TYPE | 28 | 53 | 23 | 20 |
P value = 0.227 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 69 | 30 |
SMAD4 MUTATED | 7 | 9 | 1 |
SMAD4 WILD-TYPE | 35 | 60 | 29 |
P value = 0.0211 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 11 | 64 | 61 | 16 |
SMAD4 MUTATED | 0 | 3 | 11 | 4 |
SMAD4 WILD-TYPE | 11 | 61 | 50 | 12 |
P value = 0.852 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 47 | 18 | 16 |
SMAD4 MUTATED | 3 | 8 | 2 | 1 |
SMAD4 WILD-TYPE | 20 | 39 | 16 | 15 |
P value = 0.569 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 9 | 32 | 6 | 36 | 13 | 8 |
SMAD4 MUTATED | 2 | 5 | 1 | 3 | 1 | 2 |
SMAD4 WILD-TYPE | 7 | 27 | 5 | 33 | 12 | 6 |
P value = 0.603 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 20 | 4 | 20 | 100 |
SMAD4 MUTATED | 1 | 1 | 0 | 4 | 11 |
SMAD4 WILD-TYPE | 7 | 19 | 4 | 16 | 89 |
P value = 0.515 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 1 | 4 | 1 | 111 | 35 |
SMAD4 MUTATED | 0 | 0 | 0 | 11 | 6 |
SMAD4 WILD-TYPE | 1 | 4 | 1 | 100 | 29 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_2 | CLUS_3 |
---|---|---|
ALL | 4 | 137 |
SMAD4 MUTATED | 0 | 17 |
SMAD4 WILD-TYPE | 4 | 120 |
P value = 0.866 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_3 | CLUS_4 |
---|---|---|---|
ALL | 4 | 36 | 101 |
SMAD4 MUTATED | 0 | 5 | 12 |
SMAD4 WILD-TYPE | 4 | 31 | 89 |
P value = 0.228 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 57 | 28 | 22 |
FBXW7 MUTATED | 10 | 7 | 5 | 3 |
FBXW7 WILD-TYPE | 24 | 50 | 23 | 19 |
P value = 0.0559 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 69 | 30 |
FBXW7 MUTATED | 12 | 11 | 2 |
FBXW7 WILD-TYPE | 30 | 58 | 28 |
P value = 0.00261 (Fisher's exact test), Q value = 0.57
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 11 | 64 | 61 | 16 |
FBXW7 MUTATED | 0 | 6 | 20 | 3 |
FBXW7 WILD-TYPE | 11 | 58 | 41 | 13 |
P value = 0.00342 (Fisher's exact test), Q value = 0.74
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 47 | 18 | 16 |
FBXW7 MUTATED | 4 | 8 | 1 | 9 |
FBXW7 WILD-TYPE | 19 | 39 | 17 | 7 |
P value = 0.194 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 9 | 32 | 6 | 36 | 13 | 8 |
FBXW7 MUTATED | 1 | 6 | 2 | 5 | 6 | 2 |
FBXW7 WILD-TYPE | 8 | 26 | 4 | 31 | 7 | 6 |
P value = 0.152 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 20 | 4 | 20 | 100 |
FBXW7 MUTATED | 1 | 1 | 0 | 7 | 20 |
FBXW7 WILD-TYPE | 7 | 19 | 4 | 13 | 80 |
P value = 0.00434 (Fisher's exact test), Q value = 0.92
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 1 | 4 | 1 | 111 | 35 |
FBXW7 MUTATED | 0 | 1 | 0 | 14 | 14 |
FBXW7 WILD-TYPE | 1 | 3 | 1 | 97 | 21 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_2 | CLUS_3 |
---|---|---|
ALL | 4 | 137 |
FBXW7 MUTATED | 0 | 27 |
FBXW7 WILD-TYPE | 4 | 110 |
P value = 0.182 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_3 | CLUS_4 |
---|---|---|---|
ALL | 4 | 36 | 101 |
FBXW7 MUTATED | 2 | 5 | 20 |
FBXW7 WILD-TYPE | 2 | 31 | 81 |
P value = 0.099 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 57 | 28 | 22 |
SMAD2 MUTATED | 3 | 1 | 4 | 1 |
SMAD2 WILD-TYPE | 31 | 56 | 24 | 21 |
P value = 0.109 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 69 | 30 |
SMAD2 MUTATED | 5 | 4 | 0 |
SMAD2 WILD-TYPE | 37 | 65 | 30 |
P value = 0.0278 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 11 | 64 | 61 | 16 |
SMAD2 MUTATED | 2 | 1 | 7 | 0 |
SMAD2 WILD-TYPE | 9 | 63 | 54 | 16 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 47 | 18 | 16 |
SMAD2 MUTATED | 2 | 3 | 1 | 1 |
SMAD2 WILD-TYPE | 21 | 44 | 17 | 15 |
P value = 0.941 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 9 | 32 | 6 | 36 | 13 | 8 |
SMAD2 MUTATED | 0 | 2 | 0 | 3 | 1 | 1 |
SMAD2 WILD-TYPE | 9 | 30 | 6 | 33 | 12 | 7 |
P value = 0.193 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 20 | 4 | 20 | 100 |
SMAD2 MUTATED | 0 | 1 | 0 | 4 | 5 |
SMAD2 WILD-TYPE | 8 | 19 | 4 | 16 | 95 |
P value = 0.805 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 1 | 4 | 1 | 111 | 35 |
SMAD2 MUTATED | 0 | 0 | 0 | 7 | 3 |
SMAD2 WILD-TYPE | 1 | 4 | 1 | 104 | 32 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_2 | CLUS_3 |
---|---|---|
ALL | 4 | 137 |
SMAD2 MUTATED | 0 | 9 |
SMAD2 WILD-TYPE | 4 | 128 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_3 | CLUS_4 |
---|---|---|---|
ALL | 4 | 36 | 101 |
SMAD2 MUTATED | 0 | 2 | 7 |
SMAD2 WILD-TYPE | 4 | 34 | 94 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 57 | 28 | 22 |
BRAF MUTATED | 14 | 1 | 3 | 0 |
BRAF WILD-TYPE | 20 | 56 | 25 | 22 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 69 | 30 |
BRAF MUTATED | 15 | 2 | 1 |
BRAF WILD-TYPE | 27 | 67 | 29 |
P value = 4e-05 (Fisher's exact test), Q value = 0.0089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 11 | 64 | 61 | 16 |
BRAF MUTATED | 0 | 2 | 18 | 0 |
BRAF WILD-TYPE | 11 | 62 | 43 | 16 |
P value = 0.722 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 47 | 18 | 16 |
BRAF MUTATED | 3 | 4 | 3 | 1 |
BRAF WILD-TYPE | 20 | 43 | 15 | 15 |
P value = 0.525 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 9 | 32 | 6 | 36 | 13 | 8 |
BRAF MUTATED | 1 | 3 | 2 | 3 | 1 | 1 |
BRAF WILD-TYPE | 8 | 29 | 4 | 33 | 12 | 7 |
P value = 0.0114 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 20 | 4 | 20 | 100 |
BRAF MUTATED | 0 | 0 | 1 | 7 | 12 |
BRAF WILD-TYPE | 8 | 20 | 3 | 13 | 88 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 1 | 4 | 1 | 111 | 35 |
BRAF MUTATED | 0 | 0 | 1 | 4 | 15 |
BRAF WILD-TYPE | 1 | 4 | 0 | 107 | 20 |
P value = 0.462 (Fisher's exact test), Q value = 1
nPatients | CLUS_2 | CLUS_3 |
---|---|---|
ALL | 4 | 137 |
BRAF MUTATED | 1 | 19 |
BRAF WILD-TYPE | 3 | 118 |
P value = 0.0394 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_3 | CLUS_4 |
---|---|---|---|
ALL | 4 | 36 | 101 |
BRAF MUTATED | 0 | 1 | 19 |
BRAF WILD-TYPE | 4 | 35 | 82 |
P value = 0.208 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 57 | 28 | 22 |
FAM123B MUTATED | 8 | 6 | 4 | 1 |
FAM123B WILD-TYPE | 26 | 51 | 24 | 21 |
P value = 0.184 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 69 | 30 |
FAM123B MUTATED | 9 | 8 | 2 |
FAM123B WILD-TYPE | 33 | 61 | 28 |
P value = 0.0264 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 11 | 64 | 61 | 16 |
FAM123B MUTATED | 1 | 4 | 13 | 0 |
FAM123B WILD-TYPE | 10 | 60 | 48 | 16 |
P value = 0.285 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 47 | 18 | 16 |
FAM123B MUTATED | 2 | 4 | 1 | 4 |
FAM123B WILD-TYPE | 21 | 43 | 17 | 12 |
P value = 0.189 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 9 | 32 | 6 | 36 | 13 | 8 |
FAM123B MUTATED | 1 | 4 | 0 | 2 | 4 | 0 |
FAM123B WILD-TYPE | 8 | 28 | 6 | 34 | 9 | 8 |
P value = 0.179 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 20 | 4 | 20 | 100 |
FAM123B MUTATED | 0 | 0 | 1 | 2 | 16 |
FAM123B WILD-TYPE | 8 | 20 | 3 | 18 | 84 |
P value = 0.35 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 1 | 4 | 1 | 111 | 35 |
FAM123B MUTATED | 0 | 0 | 0 | 11 | 8 |
FAM123B WILD-TYPE | 1 | 4 | 1 | 100 | 27 |
P value = 0.425 (Fisher's exact test), Q value = 1
nPatients | CLUS_2 | CLUS_3 |
---|---|---|
ALL | 4 | 137 |
FAM123B MUTATED | 1 | 17 |
FAM123B WILD-TYPE | 3 | 120 |
P value = 0.416 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_3 | CLUS_4 |
---|---|---|---|
ALL | 4 | 36 | 101 |
FAM123B MUTATED | 1 | 3 | 14 |
FAM123B WILD-TYPE | 3 | 33 | 87 |
P value = 0.00432 (Fisher's exact test), Q value = 0.92
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 57 | 28 | 22 |
MGC42105 MUTATED | 7 | 1 | 2 | 0 |
MGC42105 WILD-TYPE | 27 | 56 | 26 | 22 |
P value = 0.14 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 69 | 30 |
MGC42105 MUTATED | 6 | 3 | 1 |
MGC42105 WILD-TYPE | 36 | 66 | 29 |
P value = 0.252 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 11 | 64 | 61 | 16 |
MGC42105 MUTATED | 0 | 2 | 7 | 1 |
MGC42105 WILD-TYPE | 11 | 62 | 54 | 15 |
P value = 0.411 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 47 | 18 | 16 |
MGC42105 MUTATED | 0 | 3 | 1 | 2 |
MGC42105 WILD-TYPE | 23 | 44 | 17 | 14 |
P value = 0.174 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 9 | 32 | 6 | 36 | 13 | 8 |
MGC42105 MUTATED | 1 | 0 | 0 | 2 | 2 | 1 |
MGC42105 WILD-TYPE | 8 | 32 | 6 | 34 | 11 | 7 |
P value = 0.476 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 20 | 4 | 20 | 100 |
MGC42105 MUTATED | 1 | 0 | 0 | 2 | 6 |
MGC42105 WILD-TYPE | 7 | 20 | 4 | 18 | 94 |
P value = 0.194 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 1 | 4 | 1 | 111 | 35 |
MGC42105 MUTATED | 0 | 0 | 0 | 4 | 5 |
MGC42105 WILD-TYPE | 1 | 4 | 1 | 107 | 30 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_2 | CLUS_3 |
---|---|---|
ALL | 4 | 137 |
MGC42105 MUTATED | 0 | 10 |
MGC42105 WILD-TYPE | 4 | 127 |
P value = 0.594 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_3 | CLUS_4 |
---|---|---|---|
ALL | 4 | 36 | 101 |
MGC42105 MUTATED | 0 | 1 | 9 |
MGC42105 WILD-TYPE | 4 | 35 | 92 |
P value = 0.366 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 57 | 28 | 22 |
ACVR1B MUTATED | 4 | 2 | 3 | 1 |
ACVR1B WILD-TYPE | 30 | 55 | 25 | 21 |
P value = 0.158 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 69 | 30 |
ACVR1B MUTATED | 5 | 5 | 0 |
ACVR1B WILD-TYPE | 37 | 64 | 30 |
P value = 0.0167 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 11 | 64 | 61 | 16 |
ACVR1B MUTATED | 1 | 1 | 10 | 1 |
ACVR1B WILD-TYPE | 10 | 63 | 51 | 15 |
P value = 0.701 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 47 | 18 | 16 |
ACVR1B MUTATED | 2 | 5 | 1 | 3 |
ACVR1B WILD-TYPE | 21 | 42 | 17 | 13 |
P value = 0.432 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 9 | 32 | 6 | 36 | 13 | 8 |
ACVR1B MUTATED | 1 | 1 | 1 | 5 | 2 | 1 |
ACVR1B WILD-TYPE | 8 | 31 | 5 | 31 | 11 | 7 |
P value = 0.147 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 20 | 4 | 20 | 100 |
ACVR1B MUTATED | 0 | 1 | 0 | 5 | 7 |
ACVR1B WILD-TYPE | 8 | 19 | 4 | 15 | 93 |
P value = 0.103 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 1 | 4 | 1 | 111 | 35 |
ACVR1B MUTATED | 0 | 0 | 0 | 6 | 7 |
ACVR1B WILD-TYPE | 1 | 4 | 1 | 105 | 28 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_2 | CLUS_3 |
---|---|---|
ALL | 4 | 137 |
ACVR1B MUTATED | 0 | 13 |
ACVR1B WILD-TYPE | 4 | 124 |
P value = 0.373 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_3 | CLUS_4 |
---|---|---|---|
ALL | 4 | 36 | 101 |
ACVR1B MUTATED | 1 | 2 | 10 |
ACVR1B WILD-TYPE | 3 | 34 | 91 |
P value = 0.0292 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 57 | 28 | 22 |
DNMT1 MUTATED | 6 | 1 | 3 | 1 |
DNMT1 WILD-TYPE | 28 | 56 | 25 | 21 |
P value = 0.00783 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 69 | 30 |
DNMT1 MUTATED | 8 | 2 | 1 |
DNMT1 WILD-TYPE | 34 | 67 | 29 |
P value = 0.0879 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 11 | 64 | 61 | 16 |
DNMT1 MUTATED | 0 | 2 | 9 | 1 |
DNMT1 WILD-TYPE | 11 | 62 | 52 | 15 |
P value = 0.0512 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 47 | 18 | 16 |
DNMT1 MUTATED | 1 | 3 | 0 | 4 |
DNMT1 WILD-TYPE | 22 | 44 | 18 | 12 |
P value = 0.348 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 9 | 32 | 6 | 36 | 13 | 8 |
DNMT1 MUTATED | 1 | 2 | 0 | 2 | 3 | 0 |
DNMT1 WILD-TYPE | 8 | 30 | 6 | 34 | 10 | 8 |
P value = 0.0388 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 20 | 4 | 20 | 100 |
DNMT1 MUTATED | 1 | 0 | 0 | 5 | 6 |
DNMT1 WILD-TYPE | 7 | 20 | 4 | 15 | 94 |
P value = 0.0105 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 1 | 4 | 1 | 111 | 35 |
DNMT1 MUTATED | 0 | 1 | 0 | 4 | 7 |
DNMT1 WILD-TYPE | 1 | 3 | 1 | 107 | 28 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_2 | CLUS_3 |
---|---|---|
ALL | 4 | 137 |
DNMT1 MUTATED | 0 | 10 |
DNMT1 WILD-TYPE | 4 | 127 |
P value = 0.00423 (Fisher's exact test), Q value = 0.91
nPatients | CLUS_1 | CLUS_3 | CLUS_4 |
---|---|---|---|
ALL | 4 | 36 | 101 |
DNMT1 MUTATED | 2 | 0 | 8 |
DNMT1 WILD-TYPE | 2 | 36 | 93 |
P value = 0.329 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 57 | 28 | 22 |
PCBP1 MUTATED | 0 | 2 | 2 | 0 |
PCBP1 WILD-TYPE | 34 | 55 | 26 | 22 |
P value = 0.434 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 69 | 30 |
PCBP1 MUTATED | 0 | 3 | 1 |
PCBP1 WILD-TYPE | 42 | 66 | 29 |
P value = 0.297 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 11 | 64 | 61 | 16 |
PCBP1 MUTATED | 1 | 1 | 1 | 1 |
PCBP1 WILD-TYPE | 10 | 63 | 60 | 15 |
P value = 0.818 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 20 | 4 | 20 | 100 |
PCBP1 MUTATED | 0 | 1 | 0 | 0 | 3 |
PCBP1 WILD-TYPE | 8 | 19 | 4 | 20 | 97 |
P value = 0.637 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 1 | 4 | 1 | 111 | 35 |
PCBP1 MUTATED | 0 | 0 | 0 | 4 | 0 |
PCBP1 WILD-TYPE | 1 | 4 | 1 | 107 | 35 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_2 | CLUS_3 |
---|---|---|
ALL | 4 | 137 |
PCBP1 MUTATED | 0 | 3 |
PCBP1 WILD-TYPE | 4 | 134 |
P value = 0.602 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_3 | CLUS_4 |
---|---|---|---|
ALL | 4 | 36 | 101 |
PCBP1 MUTATED | 0 | 0 | 3 |
PCBP1 WILD-TYPE | 4 | 36 | 98 |
P value = 0.0025 (Fisher's exact test), Q value = 0.54
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 57 | 28 | 22 |
CDC27 MUTATED | 5 | 0 | 4 | 0 |
CDC27 WILD-TYPE | 29 | 57 | 24 | 22 |
P value = 0.0734 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 69 | 30 |
CDC27 MUTATED | 6 | 2 | 1 |
CDC27 WILD-TYPE | 36 | 67 | 29 |
P value = 0.00711 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 11 | 64 | 61 | 16 |
CDC27 MUTATED | 0 | 0 | 8 | 2 |
CDC27 WILD-TYPE | 11 | 64 | 53 | 14 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 47 | 18 | 16 |
CDC27 MUTATED | 2 | 4 | 1 | 1 |
CDC27 WILD-TYPE | 21 | 43 | 17 | 15 |
P value = 0.955 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 9 | 32 | 6 | 36 | 13 | 8 |
CDC27 MUTATED | 1 | 2 | 0 | 4 | 1 | 0 |
CDC27 WILD-TYPE | 8 | 30 | 6 | 32 | 12 | 8 |
P value = 0.436 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 20 | 4 | 20 | 100 |
CDC27 MUTATED | 0 | 1 | 1 | 2 | 6 |
CDC27 WILD-TYPE | 8 | 19 | 3 | 18 | 94 |
P value = 0.0197 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 1 | 4 | 1 | 111 | 35 |
CDC27 MUTATED | 0 | 0 | 1 | 4 | 5 |
CDC27 WILD-TYPE | 1 | 4 | 0 | 107 | 30 |
P value = 0.186 (Fisher's exact test), Q value = 1
nPatients | CLUS_2 | CLUS_3 |
---|---|---|
ALL | 4 | 137 |
CDC27 MUTATED | 1 | 6 |
CDC27 WILD-TYPE | 3 | 131 |
P value = 0.0139 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_3 | CLUS_4 |
---|---|---|---|
ALL | 4 | 36 | 101 |
CDC27 MUTATED | 2 | 1 | 4 |
CDC27 WILD-TYPE | 2 | 35 | 97 |
P value = 0.331 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 57 | 28 | 22 |
PIK3CA MUTATED | 6 | 5 | 6 | 4 |
PIK3CA WILD-TYPE | 28 | 52 | 22 | 18 |
P value = 0.582 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 69 | 30 |
PIK3CA MUTATED | 8 | 10 | 3 |
PIK3CA WILD-TYPE | 34 | 59 | 27 |
P value = 0.0149 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 11 | 64 | 61 | 16 |
PIK3CA MUTATED | 3 | 5 | 16 | 1 |
PIK3CA WILD-TYPE | 8 | 59 | 45 | 15 |
P value = 0.12 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 47 | 18 | 16 |
PIK3CA MUTATED | 8 | 8 | 1 | 4 |
PIK3CA WILD-TYPE | 15 | 39 | 17 | 12 |
P value = 0.857 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 9 | 32 | 6 | 36 | 13 | 8 |
PIK3CA MUTATED | 3 | 5 | 1 | 7 | 3 | 2 |
PIK3CA WILD-TYPE | 6 | 27 | 5 | 29 | 10 | 6 |
P value = 0.0389 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 20 | 4 | 20 | 100 |
PIK3CA MUTATED | 2 | 2 | 1 | 8 | 13 |
PIK3CA WILD-TYPE | 6 | 18 | 3 | 12 | 87 |
P value = 0.562 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 1 | 4 | 1 | 111 | 35 |
PIK3CA MUTATED | 0 | 1 | 0 | 17 | 8 |
PIK3CA WILD-TYPE | 1 | 3 | 1 | 94 | 27 |
P value = 0.514 (Fisher's exact test), Q value = 1
nPatients | CLUS_2 | CLUS_3 |
---|---|---|
ALL | 4 | 137 |
PIK3CA MUTATED | 1 | 22 |
PIK3CA WILD-TYPE | 3 | 115 |
P value = 0.229 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_3 | CLUS_4 |
---|---|---|---|
ALL | 4 | 36 | 101 |
PIK3CA MUTATED | 1 | 3 | 19 |
PIK3CA WILD-TYPE | 3 | 33 | 82 |
P value = 0.0346 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 57 | 28 | 22 |
BCOR MUTATED | 3 | 0 | 2 | 0 |
BCOR WILD-TYPE | 31 | 57 | 26 | 22 |
P value = 0.0545 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 69 | 30 |
BCOR MUTATED | 4 | 1 | 0 |
BCOR WILD-TYPE | 38 | 68 | 30 |
P value = 0.244 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 11 | 64 | 61 | 16 |
BCOR MUTATED | 0 | 1 | 5 | 0 |
BCOR WILD-TYPE | 11 | 63 | 56 | 16 |
P value = 0.2 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 47 | 18 | 16 |
BCOR MUTATED | 0 | 4 | 0 | 2 |
BCOR WILD-TYPE | 23 | 43 | 18 | 14 |
P value = 0.601 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 9 | 32 | 6 | 36 | 13 | 8 |
BCOR MUTATED | 0 | 1 | 1 | 3 | 1 | 0 |
BCOR WILD-TYPE | 9 | 31 | 5 | 33 | 12 | 8 |
P value = 0.631 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 20 | 4 | 20 | 100 |
BCOR MUTATED | 0 | 0 | 0 | 2 | 4 |
BCOR WILD-TYPE | 8 | 20 | 4 | 18 | 96 |
P value = 0.12 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 1 | 4 | 1 | 111 | 35 |
BCOR MUTATED | 0 | 0 | 0 | 2 | 4 |
BCOR WILD-TYPE | 1 | 4 | 1 | 109 | 31 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_2 | CLUS_3 |
---|---|---|
ALL | 4 | 137 |
BCOR MUTATED | 0 | 5 |
BCOR WILD-TYPE | 4 | 132 |
P value = 0.0965 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_3 | CLUS_4 |
---|---|---|---|
ALL | 4 | 36 | 101 |
BCOR MUTATED | 1 | 0 | 4 |
BCOR WILD-TYPE | 3 | 36 | 97 |
P value = 0.217 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 57 | 28 | 22 |
ZHX2 MUTATED | 4 | 2 | 1 | 0 |
ZHX2 WILD-TYPE | 30 | 55 | 27 | 22 |
P value = 0.228 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 69 | 30 |
ZHX2 MUTATED | 4 | 3 | 0 |
ZHX2 WILD-TYPE | 38 | 66 | 30 |
P value = 0.171 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 11 | 64 | 61 | 16 |
ZHX2 MUTATED | 0 | 1 | 6 | 1 |
ZHX2 WILD-TYPE | 11 | 63 | 55 | 15 |
P value = 0.23 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 47 | 18 | 16 |
ZHX2 MUTATED | 0 | 3 | 0 | 2 |
ZHX2 WILD-TYPE | 23 | 44 | 18 | 14 |
P value = 0.577 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 9 | 32 | 6 | 36 | 13 | 8 |
ZHX2 MUTATED | 0 | 1 | 0 | 2 | 2 | 0 |
ZHX2 WILD-TYPE | 9 | 31 | 6 | 34 | 11 | 8 |
P value = 0.919 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 20 | 4 | 20 | 100 |
ZHX2 MUTATED | 0 | 1 | 0 | 0 | 7 |
ZHX2 WILD-TYPE | 8 | 19 | 4 | 20 | 93 |
P value = 0.0848 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 1 | 4 | 1 | 111 | 35 |
ZHX2 MUTATED | 0 | 0 | 0 | 3 | 5 |
ZHX2 WILD-TYPE | 1 | 4 | 1 | 108 | 30 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_2 | CLUS_3 |
---|---|---|
ALL | 4 | 137 |
ZHX2 MUTATED | 0 | 6 |
ZHX2 WILD-TYPE | 4 | 131 |
P value = 0.196 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_3 | CLUS_4 |
---|---|---|---|
ALL | 4 | 36 | 101 |
ZHX2 MUTATED | 1 | 1 | 4 |
ZHX2 WILD-TYPE | 3 | 35 | 97 |
P value = 0.373 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 57 | 28 | 22 |
KLHL5 MUTATED | 2 | 1 | 2 | 0 |
KLHL5 WILD-TYPE | 32 | 56 | 26 | 22 |
P value = 0.297 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 69 | 30 |
KLHL5 MUTATED | 2 | 1 | 2 |
KLHL5 WILD-TYPE | 40 | 68 | 28 |
P value = 0.421 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 11 | 64 | 61 | 16 |
KLHL5 MUTATED | 0 | 1 | 4 | 0 |
KLHL5 WILD-TYPE | 11 | 63 | 57 | 16 |
P value = 0.222 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 47 | 18 | 16 |
KLHL5 MUTATED | 0 | 2 | 0 | 2 |
KLHL5 WILD-TYPE | 23 | 45 | 18 | 14 |
P value = 0.875 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 9 | 32 | 6 | 36 | 13 | 8 |
KLHL5 MUTATED | 0 | 2 | 0 | 1 | 1 | 0 |
KLHL5 WILD-TYPE | 9 | 30 | 6 | 35 | 12 | 8 |
P value = 0.632 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 20 | 4 | 20 | 100 |
KLHL5 MUTATED | 0 | 1 | 0 | 1 | 3 |
KLHL5 WILD-TYPE | 8 | 19 | 4 | 19 | 97 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 1 | 4 | 1 | 111 | 35 |
KLHL5 MUTATED | 0 | 0 | 0 | 4 | 1 |
KLHL5 WILD-TYPE | 1 | 4 | 1 | 107 | 34 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_2 | CLUS_3 |
---|---|---|
ALL | 4 | 137 |
KLHL5 MUTATED | 0 | 4 |
KLHL5 WILD-TYPE | 4 | 133 |
P value = 0.16 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_3 | CLUS_4 |
---|---|---|---|
ALL | 4 | 36 | 101 |
KLHL5 MUTATED | 1 | 1 | 2 |
KLHL5 WILD-TYPE | 3 | 35 | 99 |
P value = 0.00049 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 57 | 28 | 22 |
CASP8 MUTATED | 7 | 0 | 2 | 0 |
CASP8 WILD-TYPE | 27 | 57 | 26 | 22 |
P value = 3e-05 (Fisher's exact test), Q value = 0.0067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 69 | 30 |
CASP8 MUTATED | 9 | 0 | 0 |
CASP8 WILD-TYPE | 33 | 69 | 30 |
P value = 0.00109 (Fisher's exact test), Q value = 0.24
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 11 | 64 | 61 | 16 |
CASP8 MUTATED | 0 | 0 | 10 | 0 |
CASP8 WILD-TYPE | 11 | 64 | 51 | 16 |
P value = 0.0158 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 47 | 18 | 16 |
CASP8 MUTATED | 4 | 1 | 0 | 3 |
CASP8 WILD-TYPE | 19 | 46 | 18 | 13 |
P value = 0.15 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 9 | 32 | 6 | 36 | 13 | 8 |
CASP8 MUTATED | 1 | 2 | 1 | 1 | 3 | 0 |
CASP8 WILD-TYPE | 8 | 30 | 5 | 35 | 10 | 8 |
P value = 0.0358 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 20 | 4 | 20 | 100 |
CASP8 MUTATED | 0 | 0 | 0 | 5 | 5 |
CASP8 WILD-TYPE | 8 | 20 | 4 | 15 | 95 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 1 | 4 | 1 | 111 | 35 |
CASP8 MUTATED | 0 | 0 | 0 | 0 | 10 |
CASP8 WILD-TYPE | 1 | 4 | 1 | 111 | 25 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_2 | CLUS_3 |
---|---|---|
ALL | 4 | 137 |
CASP8 MUTATED | 0 | 8 |
CASP8 WILD-TYPE | 4 | 129 |
P value = 0.0761 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_3 | CLUS_4 |
---|---|---|---|
ALL | 4 | 36 | 101 |
CASP8 MUTATED | 1 | 0 | 7 |
CASP8 WILD-TYPE | 3 | 36 | 94 |
P value = 0.109 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 57 | 28 | 22 |
PCDHGB1 MUTATED | 3 | 1 | 3 | 0 |
PCDHGB1 WILD-TYPE | 31 | 56 | 25 | 22 |
P value = 0.267 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 69 | 30 |
PCDHGB1 MUTATED | 4 | 2 | 1 |
PCDHGB1 WILD-TYPE | 38 | 67 | 29 |
P value = 0.144 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 11 | 64 | 61 | 16 |
PCDHGB1 MUTATED | 0 | 1 | 6 | 0 |
PCDHGB1 WILD-TYPE | 11 | 63 | 55 | 16 |
P value = 0.43 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 47 | 18 | 16 |
PCDHGB1 MUTATED | 1 | 2 | 0 | 2 |
PCDHGB1 WILD-TYPE | 22 | 45 | 18 | 14 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 9 | 32 | 6 | 36 | 13 | 8 |
PCDHGB1 MUTATED | 0 | 2 | 0 | 2 | 1 | 0 |
PCDHGB1 WILD-TYPE | 9 | 30 | 6 | 34 | 12 | 8 |
P value = 0.618 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 20 | 4 | 20 | 100 |
PCDHGB1 MUTATED | 0 | 0 | 0 | 2 | 5 |
PCDHGB1 WILD-TYPE | 8 | 20 | 4 | 18 | 95 |
P value = 0.52 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 1 | 4 | 1 | 111 | 35 |
PCDHGB1 MUTATED | 0 | 0 | 0 | 4 | 3 |
PCDHGB1 WILD-TYPE | 1 | 4 | 1 | 107 | 32 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_2 | CLUS_3 |
---|---|---|
ALL | 4 | 137 |
PCDHGB1 MUTATED | 0 | 6 |
PCDHGB1 WILD-TYPE | 4 | 131 |
P value = 0.196 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_3 | CLUS_4 |
---|---|---|---|
ALL | 4 | 36 | 101 |
PCDHGB1 MUTATED | 1 | 1 | 4 |
PCDHGB1 WILD-TYPE | 3 | 35 | 97 |
P value = 0.326 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 11 | 64 | 61 | 16 |
UBXN11 MUTATED | 0 | 0 | 3 | 0 |
UBXN11 WILD-TYPE | 11 | 64 | 58 | 16 |
P value = 0.201 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 20 | 4 | 20 | 100 |
UBXN11 MUTATED | 0 | 0 | 0 | 2 | 1 |
UBXN11 WILD-TYPE | 8 | 20 | 4 | 18 | 99 |
P value = 0.0558 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 1 | 4 | 1 | 111 | 35 |
UBXN11 MUTATED | 0 | 0 | 0 | 0 | 3 |
UBXN11 WILD-TYPE | 1 | 4 | 1 | 111 | 32 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_2 | CLUS_3 |
---|---|---|
ALL | 4 | 137 |
UBXN11 MUTATED | 0 | 3 |
UBXN11 WILD-TYPE | 4 | 134 |
P value = 0.604 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_3 | CLUS_4 |
---|---|---|---|
ALL | 4 | 36 | 101 |
UBXN11 MUTATED | 0 | 0 | 3 |
UBXN11 WILD-TYPE | 4 | 36 | 98 |
P value = 0.00106 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 57 | 28 | 22 |
MIER3 MUTATED | 6 | 0 | 3 | 0 |
MIER3 WILD-TYPE | 28 | 57 | 25 | 22 |
P value = 0.00487 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 69 | 30 |
MIER3 MUTATED | 7 | 1 | 1 |
MIER3 WILD-TYPE | 35 | 68 | 29 |
P value = 0.00496 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 11 | 64 | 61 | 16 |
MIER3 MUTATED | 0 | 0 | 9 | 1 |
MIER3 WILD-TYPE | 11 | 64 | 52 | 15 |
P value = 0.772 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 47 | 18 | 16 |
MIER3 MUTATED | 2 | 4 | 0 | 1 |
MIER3 WILD-TYPE | 21 | 43 | 18 | 15 |
P value = 0.782 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 9 | 32 | 6 | 36 | 13 | 8 |
MIER3 MUTATED | 0 | 4 | 0 | 3 | 0 | 0 |
MIER3 WILD-TYPE | 9 | 28 | 6 | 33 | 13 | 8 |
P value = 0.945 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 20 | 4 | 20 | 100 |
MIER3 MUTATED | 0 | 1 | 0 | 2 | 7 |
MIER3 WILD-TYPE | 8 | 19 | 4 | 18 | 93 |
P value = 0.0116 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 1 | 4 | 1 | 111 | 35 |
MIER3 MUTATED | 0 | 1 | 0 | 3 | 6 |
MIER3 WILD-TYPE | 1 | 3 | 1 | 108 | 29 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_2 | CLUS_3 |
---|---|---|
ALL | 4 | 137 |
MIER3 MUTATED | 0 | 10 |
MIER3 WILD-TYPE | 4 | 127 |
P value = 0.175 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_3 | CLUS_4 |
---|---|---|---|
ALL | 4 | 36 | 101 |
MIER3 MUTATED | 1 | 1 | 8 |
MIER3 WILD-TYPE | 3 | 35 | 93 |
P value = 0.237 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 57 | 28 | 22 |
TBC1D10C MUTATED | 1 | 0 | 1 | 1 |
TBC1D10C WILD-TYPE | 33 | 57 | 27 | 21 |
P value = 0.13 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 69 | 30 |
TBC1D10C MUTATED | 2 | 0 | 1 |
TBC1D10C WILD-TYPE | 40 | 69 | 29 |
P value = 0.783 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 11 | 64 | 61 | 16 |
TBC1D10C MUTATED | 0 | 1 | 2 | 0 |
TBC1D10C WILD-TYPE | 11 | 63 | 59 | 16 |
P value = 0.133 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 20 | 4 | 20 | 100 |
TBC1D10C MUTATED | 1 | 0 | 0 | 1 | 1 |
TBC1D10C WILD-TYPE | 7 | 20 | 4 | 19 | 99 |
P value = 0.24 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 1 | 4 | 1 | 111 | 35 |
TBC1D10C MUTATED | 0 | 0 | 0 | 1 | 2 |
TBC1D10C WILD-TYPE | 1 | 4 | 1 | 110 | 33 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_2 | CLUS_3 |
---|---|---|
ALL | 4 | 137 |
TBC1D10C MUTATED | 0 | 3 |
TBC1D10C WILD-TYPE | 4 | 134 |
P value = 0.603 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_3 | CLUS_4 |
---|---|---|---|
ALL | 4 | 36 | 101 |
TBC1D10C MUTATED | 0 | 0 | 3 |
TBC1D10C WILD-TYPE | 4 | 36 | 98 |
P value = 0.218 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 57 | 28 | 22 |
TCF7L2 MUTATED | 3 | 1 | 3 | 1 |
TCF7L2 WILD-TYPE | 31 | 56 | 25 | 21 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 69 | 30 |
TCF7L2 MUTATED | 2 | 4 | 2 |
TCF7L2 WILD-TYPE | 40 | 65 | 28 |
P value = 0.151 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 11 | 64 | 61 | 16 |
TCF7L2 MUTATED | 2 | 2 | 6 | 1 |
TCF7L2 WILD-TYPE | 9 | 62 | 55 | 15 |
P value = 0.949 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 47 | 18 | 16 |
TCF7L2 MUTATED | 1 | 5 | 1 | 1 |
TCF7L2 WILD-TYPE | 22 | 42 | 17 | 15 |
P value = 0.86 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 9 | 32 | 6 | 36 | 13 | 8 |
TCF7L2 MUTATED | 1 | 3 | 0 | 4 | 0 | 0 |
TCF7L2 WILD-TYPE | 8 | 29 | 6 | 32 | 13 | 8 |
P value = 0.672 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 20 | 4 | 20 | 100 |
TCF7L2 MUTATED | 0 | 2 | 0 | 0 | 8 |
TCF7L2 WILD-TYPE | 8 | 18 | 4 | 20 | 92 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 1 | 4 | 1 | 111 | 35 |
TCF7L2 MUTATED | 0 | 0 | 0 | 8 | 2 |
TCF7L2 WILD-TYPE | 1 | 4 | 1 | 103 | 33 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_2 | CLUS_3 |
---|---|---|
ALL | 4 | 137 |
TCF7L2 MUTATED | 0 | 9 |
TCF7L2 WILD-TYPE | 4 | 128 |
P value = 0.319 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_3 | CLUS_4 |
---|---|---|---|
ALL | 4 | 36 | 101 |
TCF7L2 MUTATED | 1 | 2 | 6 |
TCF7L2 WILD-TYPE | 3 | 34 | 95 |
P value = 0.372 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 57 | 28 | 22 |
PCDHGA9 MUTATED | 2 | 1 | 2 | 0 |
PCDHGA9 WILD-TYPE | 32 | 56 | 26 | 22 |
P value = 0.422 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 69 | 30 |
PCDHGA9 MUTATED | 3 | 2 | 0 |
PCDHGA9 WILD-TYPE | 39 | 67 | 30 |
P value = 0.425 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 11 | 64 | 61 | 16 |
PCDHGA9 MUTATED | 0 | 1 | 4 | 0 |
PCDHGA9 WILD-TYPE | 11 | 63 | 57 | 16 |
P value = 0.65 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 47 | 18 | 16 |
PCDHGA9 MUTATED | 1 | 1 | 0 | 1 |
PCDHGA9 WILD-TYPE | 22 | 46 | 18 | 15 |
P value = 0.385 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 9 | 32 | 6 | 36 | 13 | 8 |
PCDHGA9 MUTATED | 0 | 3 | 0 | 0 | 0 | 0 |
PCDHGA9 WILD-TYPE | 9 | 29 | 6 | 36 | 13 | 8 |
P value = 0.115 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 20 | 4 | 20 | 100 |
PCDHGA9 MUTATED | 0 | 0 | 0 | 3 | 2 |
PCDHGA9 WILD-TYPE | 8 | 20 | 4 | 17 | 98 |
P value = 0.259 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 1 | 4 | 1 | 111 | 35 |
PCDHGA9 MUTATED | 0 | 0 | 0 | 2 | 3 |
PCDHGA9 WILD-TYPE | 1 | 4 | 1 | 109 | 32 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_2 | CLUS_3 |
---|---|---|
ALL | 4 | 137 |
PCDHGA9 MUTATED | 0 | 5 |
PCDHGA9 WILD-TYPE | 4 | 132 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_3 | CLUS_4 |
---|---|---|---|
ALL | 4 | 36 | 101 |
PCDHGA9 MUTATED | 0 | 1 | 4 |
PCDHGA9 WILD-TYPE | 4 | 35 | 97 |
P value = 0.7 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 57 | 28 | 22 |
PCDHGA7 MUTATED | 2 | 1 | 1 | 1 |
PCDHGA7 WILD-TYPE | 32 | 56 | 27 | 21 |
P value = 0.848 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 69 | 30 |
PCDHGA7 MUTATED | 2 | 2 | 1 |
PCDHGA7 WILD-TYPE | 40 | 67 | 29 |
P value = 0.0449 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 11 | 64 | 61 | 16 |
PCDHGA7 MUTATED | 0 | 0 | 3 | 2 |
PCDHGA7 WILD-TYPE | 11 | 64 | 58 | 14 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 20 | 4 | 20 | 100 |
PCDHGA7 MUTATED | 0 | 0 | 0 | 1 | 4 |
PCDHGA7 WILD-TYPE | 8 | 20 | 4 | 19 | 96 |
P value = 0.665 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 1 | 4 | 1 | 111 | 35 |
PCDHGA7 MUTATED | 0 | 0 | 0 | 3 | 2 |
PCDHGA7 WILD-TYPE | 1 | 4 | 1 | 108 | 33 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_2 | CLUS_3 |
---|---|---|
ALL | 4 | 137 |
PCDHGA7 MUTATED | 0 | 4 |
PCDHGA7 WILD-TYPE | 4 | 133 |
P value = 0.36 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_3 | CLUS_4 |
---|---|---|---|
ALL | 4 | 36 | 101 |
PCDHGA7 MUTATED | 0 | 2 | 2 |
PCDHGA7 WILD-TYPE | 4 | 34 | 99 |
P value = 0.417 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 57 | 28 | 22 |
KLK2 MUTATED | 2 | 1 | 0 | 0 |
KLK2 WILD-TYPE | 32 | 56 | 28 | 22 |
P value = 0.131 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 69 | 30 |
KLK2 MUTATED | 2 | 0 | 1 |
KLK2 WILD-TYPE | 40 | 69 | 29 |
P value = 0.784 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 11 | 64 | 61 | 16 |
KLK2 MUTATED | 0 | 1 | 2 | 0 |
KLK2 WILD-TYPE | 11 | 63 | 59 | 16 |
P value = 0.721 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 8 | 20 | 4 | 20 | 100 |
KLK2 MUTATED | 0 | 0 | 0 | 1 | 2 |
KLK2 WILD-TYPE | 8 | 20 | 4 | 19 | 98 |
P value = 0.24 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 1 | 4 | 1 | 111 | 35 |
KLK2 MUTATED | 0 | 0 | 0 | 1 | 2 |
KLK2 WILD-TYPE | 1 | 4 | 1 | 110 | 33 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_2 | CLUS_3 |
---|---|---|
ALL | 4 | 137 |
KLK2 MUTATED | 0 | 2 |
KLK2 WILD-TYPE | 4 | 135 |
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Mutation data file = transformed.cor.cli.txt
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Molecular subtypes file = COAD-TP.transferedmergedcluster.txt
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Number of patients = 154
-
Number of significantly mutated genes = 27
-
Number of Molecular subtypes = 9
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Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.