Clinical Features Time to Death AGE PRIMARY.SITE.OF.DISEASE NEOPLASM.DISEASESTAGE PATHOLOGY.T.STAGE PATHOLOGY.N.STAGE PATHOLOGY.M.STAGE GENDER HISTOLOGICAL.TYPE RADIATIONS.RADIATION.REGIMENINDICATION COMPLETENESS.OF.RESECTION NUMBER.OF.LYMPH.NODES RACE nCNV (%) nWild-Type logrank test_P logrank test_Q Wilcoxon-test_P Wilcoxon-test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Wilcoxon-test_P Wilcoxon-test_Q Fisher's exact test_P Fisher's exact test_Q 1p gain 47 (8%) 545 0.16401 1 0.73602 1 1 1 0.29834 1 0.38037 1 0.34483 1 0.23052 1 0.64808 1 0.1201 1 0.52753 1 0.13727 1 0.073196 1 0.63645 1 1q gain 115 (19%) 477 0.37322 1 0.4093 1 0.29164 1 0.093569 1 0.02145 1 0.0224 1 0.02982 1 0.4667 1 0.24593 1 0.38678 1 0.33326 1 0.0014 1 1 1 2p gain 114 (19%) 478 0.28837 1 0.45639 1 0.060581 1 0.44072 1 0.53899 1 0.18636 1 0.38718 1 0.34836 1 0.0050699 1 0.38508 1 0.02859 1 0.28891 1 0.93905 1 2q gain 112 (19%) 480 0.14894 1 0.18453 1 0.013152 1 0.30687 1 0.60322 1 0.091349 1 0.40213 1 0.24894 1 0.0015 1 0.070522 1 0.34716 1 0.14919 1 0.60845 1 3p gain 69 (12%) 523 0.35936 1 0.11011 1 0.030167 1 0.083249 1 0.97054 1 0.20105 1 0.01543 1 0.37017 1 0.066149 1 1 1 0.97092 1 0.10929 1 0.24022 1 3q gain 95 (16%) 497 0.20456 1 0.25649 1 0.041996 1 0.091599 1 0.88513 1 0.055939 1 0.00178 1 0.43447 1 0.02784 1 0.64201 1 0.57474 1 0.049654 1 0.27002 1 4p gain 18 (3%) 574 0.75437 1 0.73011 1 0.032839 1 0.63573 1 0.35688 1 0.60515 1 0.25449 1 0.33817 1 0.091919 1 1 1 0.73793 1 0.66454 1 0.39604 1 4q gain 19 (3%) 573 0.25938 1 0.27835 1 1 1 0.84223 1 1 1 0.40282 1 0.32126 1 0.24288 1 0.59889 1 1 1 0.56603 1 0.26918 1 0.7631 1 5p gain 98 (17%) 494 0.4302 1 0.17837 1 0.080482 1 0.43703 1 0.68125 1 0.065779 1 0.5413 1 1 1 0.03521 1 0.17428 1 0.11676 1 0.060481 1 0.25764 1 5q gain 62 (10%) 530 0.50017 1 0.90797 1 0.06949 1 0.6821 1 0.66174 1 0.53541 1 0.84647 1 0.68685 1 0.066949 1 1 1 0.15084 1 0.71136 1 0.37213 1 6p gain 118 (20%) 474 0.46997 1 0.58205 1 0.13006 1 0.11783 1 0.50325 1 0.00093999 0.923 0.35733 1 0.21679 1 0.11241 1 0.00027064 0.27 0.22273 1 0.0018975 1 0.28306 1 6q gain 105 (18%) 487 0.50888 1 0.63295 1 0.22261 1 0.056969 1 0.78681 1 0.00409 1 0.11072 1 0.39008 1 0.03587 1 0.00012233 0.123 0.27691 1 0.0065758 1 0.82866 1 7p gain 336 (57%) 256 0.45676 1 0.19871 1 0.075284 1 0.00016 0.16 0.87772 1 2e-05 0.0203 0.03322 1 0.61835 1 0.00026 0.259 0.31195 1 0.25588 1 6.2269e-05 0.0628 0.68312 1 7q gain 300 (51%) 292 0.66257 1 0.17064 1 0.57757 1 8.9999e-05 0.0905 0.56693 1 0.00060999 0.601 0.01207 1 0.62124 1 0.0036 1 1 1 0.3723 1 0.0018998 1 0.44134 1 8p gain 162 (27%) 430 0.35498 1 0.37141 1 0.46778 1 0.46103 1 0.79743 1 0.28038 1 0.92134 1 1 1 0.57608 1 0.71077 1 0.2309 1 0.16471 1 1 1 8q gain 302 (51%) 290 0.47296 1 0.11694 1 0.40456 1 0.14513 1 0.21025 1 0.14816 1 0.15555 1 0.86921 1 0.03916 1 0.037987 1 0.17271 1 0.24613 1 0.84582 1 9p gain 116 (20%) 476 0.0078801 1 0.77273 1 0.019217 1 0.01704 1 0.58458 1 0.11991 1 0.74471 1 0.91752 1 0.0084599 1 1 1 0.24697 1 0.14284 1 0.10794 1 9q gain 98 (17%) 494 0.0093023 1 0.90305 1 0.17266 1 0.088049 1 0.48315 1 0.32573 1 0.8986 1 0.57995 1 0.091239 1 1 1 0.55236 1 0.31919 1 0.36064 1 10p gain 44 (7%) 548 0.027888 1 0.72686 1 0.86074 1 0.60016 1 0.17585 1 0.03251 1 0.40643 1 1 1 0.87097 1 0.50342 1 0.57454 1 0.10518 1 0.15305 1 10q gain 24 (4%) 568 0.58552 1 0.074073 1 1 1 0.58898 1 0.513 1 0.04015 1 0.40874 1 0.83566 1 0.91186 1 0.31275 1 0.67238 1 0.022608 1 0.04413 1 11p gain 80 (14%) 512 0.99122 1 0.01688 1 0.021124 1 0.22538 1 0.22218 1 0.46213 1 0.11283 1 1 1 0.00093999 0.923 0.1091 1 0.33771 1 0.35697 1 0.48067 1 11q gain 72 (12%) 520 0.59631 1 0.00025603 0.256 0.12113 1 0.36004 1 0.60404 1 0.42374 1 0.054879 1 1 1 0.00109 1 0.30076 1 0.47406 1 0.38577 1 0.6387 1 12p gain 125 (21%) 467 0.2607 1 0.11885 1 0.90994 1 0.23242 1 0.31157 1 0.20975 1 0.26563 1 0.92001 1 0.77457 1 0.40728 1 0.78441 1 0.21092 1 0.89454 1 12q gain 109 (18%) 483 0.53566 1 0.03343 1 0.23202 1 0.050979 1 0.46714 1 0.04509 1 0.059279 1 0.52607 1 0.45796 1 1 1 0.6162 1 0.020655 1 0.95743 1 13q gain 355 (60%) 237 0.50385 1 0.40441 1 0.023295 1 0.00282 1 0.80892 1 0.00037 0.367 0.03903 1 0.24026 1 9.9999e-06 0.0102 0.32725 1 0.089559 1 0.001969 1 0.04439 1 14q gain 41 (7%) 551 0.40032 1 0.91428 1 0.36146 1 0.91362 1 0.96418 1 0.81607 1 0.053879 1 0.7475 1 0.30223 1 0.47822 1 0.60584 1 0.45291 1 0.0064999 1 15q gain 15 (3%) 577 0.96731 1 0.32792 1 1 1 0.55457 1 0.071909 1 0.71846 1 0.16702 1 0.063067 1 0.080829 1 0.20751 1 0.69831 1 0.40144 1 0.45216 1 16p gain 141 (24%) 451 0.45874 1 0.16094 1 1 1 0.01972 1 0.98981 1 0.00225 1 0.3211 1 0.84731 1 0.00326 1 0.2275 1 0.73746 1 0.0044544 1 0.4394 1 16q gain 139 (23%) 453 0.72605 1 0.11149 1 0.74274 1 0.0066299 1 0.9771 1 0.00047 0.466 0.26802 1 0.92263 1 0.0038 1 0.22512 1 0.68535 1 0.0028529 1 0.4086 1 17p gain 35 (6%) 557 0.057846 1 0.90088 1 1 1 0.51626 1 0.29938 1 0.86173 1 0.19704 1 1 1 0.95186 1 1 1 0.87061 1 0.83541 1 0.074519 1 17q gain 105 (18%) 487 0.1747 1 0.57558 1 1 1 0.13515 1 0.76135 1 0.38146 1 0.0054499 1 1 1 0.45657 1 1 1 0.16902 1 0.8152 1 0.6293 1 18p gain 33 (6%) 559 0.4548 1 0.57302 1 0.84118 1 0.01201 1 0.66393 1 0.01209 1 0.12852 1 0.15012 1 0.0356 1 0.40538 1 1 1 0.011818 1 0.80529 1 18q gain 20 (3%) 572 0.96514 1 0.14762 1 1 1 0.088039 1 0.47645 1 0.15389 1 0.67093 1 0.17105 1 0.061129 1 0.26762 1 0.63409 1 0.24057 1 0.22026 1 19p gain 99 (17%) 493 0.74375 1 0.9982 1 0.32112 1 0.86377 1 0.94557 1 0.13377 1 0.36051 1 0.18557 1 0.063819 1 1 1 0.36481 1 0.68934 1 1 1 19q gain 109 (18%) 483 0.5015 1 0.83293 1 0.55167 1 0.71001 1 0.94585 1 0.084969 1 0.14311 1 0.45709 1 0.20867 1 1 1 0.49738 1 0.91217 1 0.93252 1 20p gain 340 (57%) 252 0.13782 1 0.59801 1 0.0064718 1 0.00013 0.13 0.52432 1 0.066529 1 0.0063299 1 0.13463 1 3e-05 0.0304 0.31361 1 0.080059 1 0.036202 1 0.81944 1 20q gain 447 (76%) 145 0.47905 1 0.16472 1 2.7652e-06 0.00283 0.00017 0.17 0.30399 1 0.0013 1 0.00104 1 0.33923 1 9.9999e-06 0.0102 0.69568 1 0.02481 1 0.0070535 1 0.095599 1 21q gain 30 (5%) 562 0.64277 1 0.029936 1 0.39156 1 0.59146 1 0.20453 1 0.58938 1 0.46575 1 0.85143 1 0.53897 1 1 1 0.67213 1 0.29825 1 0.44 1 22q gain 22 (4%) 570 0.60826 1 0.39692 1 0.082846 1 0.61977 1 0.13442 1 0.39725 1 0.24294 1 1 1 0.099689 1 0.29051 1 0.33572 1 0.17747 1 0.60985 1 xq gain 101 (17%) 491 0.56065 1 0.35442 1 0.62285 1 0.13332 1 0.70311 1 0.23197 1 0.20579 1 0.22902 1 0.19766 1 1 1 0.96942 1 0.36734 1 0.78598 1 1p loss 131 (22%) 461 0.21841 1 0.47153 1 0.14808 1 0.2949 1 0.83537 1 0.0055199 1 0.065129 1 0.42787 1 0.02397 1 0.42224 1 0.78054 1 0.0013598 1 0.39506 1 1q loss 73 (12%) 519 0.19028 1 0.27226 1 0.39824 1 0.65273 1 0.71184 1 0.17929 1 0.096449 1 0.080048 1 0.29494 1 0.30677 1 0.46244 1 0.1211 1 0.15941 1 2p loss 17 (3%) 575 0.87898 1 0.23228 1 0.001084 1 0.63471 1 0.85048 1 0.89321 1 0.87001 1 0.80624 1 0.01187 1 0.23206 1 1 1 0.70518 1 0.21509 1 2q loss 13 (2%) 579 0.55149 1 0.71898 1 0.12393 1 0.14252 1 0.83276 1 0.79848 1 0.36044 1 0.58728 1 0.46331 1 1 1 0.82465 1 0.58935 1 NA NA 3p loss 66 (11%) 526 0.073131 1 0.6823 1 0.37409 1 0.04453 1 0.03348 1 0.03571 1 0.01008 1 0.51346 1 0.094379 1 0.2648 1 0.16526 1 0.029544 1 0.3537 1 3q loss 42 (7%) 550 0.16301 1 0.47509 1 0.58459 1 0.13026 1 0.12584 1 0.52261 1 0.081849 1 0.26452 1 0.0088799 1 0.12879 1 0.45262 1 0.652 1 0.29346 1 4p loss 185 (31%) 407 0.346 1 0.85282 1 0.13401 1 0.01286 1 0.81464 1 0.002 1 0.00486 1 0.7905 1 0.0144 1 0.00053791 0.531 0.12116 1 0.00065673 0.646 0.7461 1 4q loss 179 (30%) 413 0.77573 1 0.4278 1 0.0061934 1 0.11782 1 0.72384 1 0.0056799 1 0.229 1 0.78819 1 0.0057399 1 0.00041619 0.413 0.84621 1 0.0028533 1 0.67669 1 5p loss 80 (14%) 512 0.5779 1 0.39855 1 0.17507 1 0.02531 1 0.89813 1 0.0096499 1 0.33809 1 0.40152 1 0.19963 1 0.022886 1 0.74664 1 0.0068103 1 0.47956 1 5q loss 113 (19%) 479 0.062737 1 0.58086 1 0.033501 1 0.081839 1 0.58934 1 0.00319 1 0.10584 1 0.91662 1 0.03731 1 0.0021882 1 0.51877 1 0.001355 1 0.39812 1 6p loss 45 (8%) 547 0.013706 1 0.38406 1 0.86074 1 0.49193 1 0.49925 1 0.27035 1 0.3767 1 0.53888 1 0.14158 1 0.51158 1 0.04321 1 0.37375 1 0.01628 1 6q loss 68 (11%) 524 0.056876 1 0.64611 1 0.37815 1 0.26925 1 0.32922 1 0.090749 1 0.059379 1 0.24549 1 0.04049 1 1 1 0.16305 1 0.046238 1 0.0079099 1 7q loss 4 (1%) 588 0.51596 1 0.98945 1 0.2963 1 0.66534 1 0.31483 1 1 1 1 1 0.3447 1 0.13939 1 1 1 1 1 0.30161 1 NA NA 8p loss 209 (35%) 383 0.74496 1 0.73976 1 0.0047185 1 0.02217 1 0.23123 1 0.00035 0.348 0.02696 1 0.19638 1 0.00419 1 0.29068 1 0.10721 1 6.9e-05 0.0696 0.46925 1 8q loss 33 (6%) 559 0.67787 1 0.69351 1 0.4216 1 0.34056 1 0.52986 1 0.3544 1 0.34226 1 0.029823 1 0.63126 1 1 1 0.64455 1 0.85321 1 0.11597 1 9p loss 72 (12%) 520 0.49148 1 0.15904 1 0.66911 1 0.87856 1 0.094979 1 0.5421 1 0.22302 1 0.16675 1 0.16554 1 1 1 0.04287 1 0.16381 1 0.70248 1 9q loss 71 (12%) 521 0.2754 1 0.040636 1 0.5639 1 0.6512 1 0.1062 1 0.48733 1 0.091519 1 0.44837 1 0.18226 1 1 1 0.04312 1 0.3786 1 0.70651 1 10p loss 96 (16%) 496 0.41116 1 0.0092532 1 0.12976 1 0.53019 1 0.79207 1 0.14292 1 0.51356 1 0.73768 1 0.01926 1 0.0074531 1 0.9839 1 0.037007 1 0.49912 1 10q loss 104 (18%) 488 0.48343 1 0.015254 1 0.051128 1 0.73675 1 0.9673 1 0.30375 1 0.7701 1 0.58967 1 0.0136 1 0.010647 1 0.95811 1 0.14867 1 0.61775 1 11p loss 73 (12%) 519 0.82734 1 0.27131 1 0.32348 1 0.27952 1 0.5216 1 0.02391 1 0.04936 1 0.80316 1 0.24001 1 0.30677 1 0.88929 1 0.00047445 0.47 0.26582 1 11q loss 90 (15%) 502 0.33596 1 0.484 1 0.35783 1 0.62112 1 0.80003 1 0.12356 1 0.32536 1 0.73097 1 0.13805 1 0.14376 1 0.96312 1 0.047091 1 0.22111 1 12p loss 68 (11%) 524 0.11401 1 0.67566 1 0.1877 1 0.43689 1 0.32956 1 0.03642 1 0.38433 1 0.7969 1 0.01493 1 0.07335 1 0.92388 1 0.044078 1 0.75813 1 12q loss 68 (11%) 524 0.20204 1 0.95243 1 0.56239 1 0.19584 1 0.52094 1 0.03533 1 0.2258 1 1 1 0.11411 1 0.27676 1 1 1 0.027405 1 0.36989 1 13q loss 19 (3%) 573 0.93344 1 0.96186 1 0.18558 1 0.34213 1 0.56765 1 0.02834 1 0.059779 1 1 1 0.02149 1 1 1 1 1 0.011151 1 0.01098 1 14q loss 195 (33%) 397 0.66298 1 0.32573 1 0.022906 1 0.41168 1 0.39025 1 0.02169 1 0.14239 1 0.59951 1 9.9999e-06 0.0102 1 1 0.94154 1 0.30356 1 0.9559 1 15q loss 217 (37%) 375 0.77121 1 0.51414 1 0.03408 1 0.059849 1 0.22718 1 0.01809 1 0.095489 1 0.44327 1 0.0026 1 0.014189 1 0.78635 1 0.0075845 1 0.051249 1 16p loss 38 (6%) 554 0.13648 1 0.36062 1 1 1 0.13892 1 0.46247 1 0.44785 1 0.70971 1 0.3152 1 0.6486 1 1 1 0.16062 1 0.44626 1 0.28345 1 16q loss 40 (7%) 552 0.42043 1 0.20013 1 0.26866 1 0.37993 1 0.85351 1 0.23306 1 0.6711 1 0.5129 1 0.61326 1 0.46958 1 0.40673 1 0.49856 1 0.25079 1 17p loss 325 (55%) 267 0.2213 1 0.30095 1 0.025271 1 0.00394 1 0.52822 1 0.00127 1 0.0157 1 0.24773 1 9.9999e-06 0.0102 0.19528 1 0.074479 1 0.0002887 0.287 0.33394 1 17q loss 88 (15%) 504 0.13385 1 0.99379 1 0.51536 1 0.22349 1 0.1585 1 0.01833 1 0.25364 1 0.3559 1 0.87204 1 0.62884 1 0.67327 1 0.0004947 0.489 0.14823 1 18p loss 361 (61%) 231 0.71813 1 0.033416 1 4.0195e-07 0.000412 5.9999e-05 0.0606 0.86077 1 0.0050399 1 5e-05 0.0505 0.67299 1 9.9999e-06 0.0102 0.098018 1 0.02365 1 0.0023173 1 0.46583 1 18q loss 390 (66%) 202 0.91228 1 0.020992 1 1.0056e-08 1.03e-05 9.9999e-06 0.0102 0.45753 1 0.00019 0.19 9.9999e-05 0.1 0.60229 1 9.9999e-06 0.0102 0.17657 1 0.02277 1 0.00013632 0.137 0.3851 1 19p loss 61 (10%) 531 0.12697 1 0.35964 1 0.091033 1 0.0011 1 0.86116 1 0.00059999 0.592 0.01015 1 0.78665 1 0.12888 1 0.23514 1 0.43061 1 2.741e-06 0.0028 0.8609 1 19q loss 52 (9%) 540 0.42674 1 0.95828 1 0.1868 1 0.01067 1 0.80785 1 0.00382 1 0.10722 1 0.31043 1 0.29407 1 0.1831 1 0.76074 1 0.00061723 0.608 0.099419 1 20p loss 62 (10%) 530 0.947 1 0.8077 1 0.17318 1 0.51253 1 0.43424 1 0.36875 1 0.96112 1 0.59402 1 0.42902 1 0.60787 1 0.58398 1 0.79973 1 0.72167 1 20q loss 5 (1%) 587 0.33228 1 0.085058 1 0.3307 1 0.60443 1 0.80675 1 0.38509 1 1 1 1 1 0.51726 1 1 1 1 1 0.40083 1 0.075079 1 21q loss 186 (31%) 406 0.93237 1 0.48603 1 0.0036577 1 0.30797 1 0.98648 1 0.00482 1 0.56745 1 0.65738 1 0.00105 1 0.47229 1 0.77004 1 0.00086635 0.852 0.50472 1 22q loss 194 (33%) 398 0.035544 1 0.79967 1 0.69286 1 0.0062299 1 0.2739 1 4e-05 0.0405 0.0091499 1 0.79259 1 0.0152 1 0.48425 1 0.476 1 8.3548e-05 0.0841 0.35826 1 xq loss 74 (12%) 518 0.89281 1 0.75753 1 0.090831 1 0.34123 1 0.84881 1 0.21001 1 0.12416 1 1 1 0.10836 1 1 1 0.35629 1 0.092415 1 0.7208 1