This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and molecular subtypes.
Testing the association between copy number variation 80 arm-level events and 10 molecular subtypes across 571 patients, 103 significant findings detected with P value < 0.05 and Q value < 0.25.
-
1p gain cnv correlated to 'CN_CNMF'.
-
1q gain cnv correlated to 'CN_CNMF'.
-
2p gain cnv correlated to 'CN_CNMF'.
-
2q gain cnv correlated to 'CN_CNMF'.
-
3p gain cnv correlated to 'CN_CNMF'.
-
3q gain cnv correlated to 'CN_CNMF'.
-
5p gain cnv correlated to 'CN_CNMF'.
-
5q gain cnv correlated to 'CN_CNMF'.
-
7p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
-
7q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
-
8p gain cnv correlated to 'MRNA_CNMF' and 'CN_CNMF'.
-
8q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
-
9p gain cnv correlated to 'CN_CNMF'.
-
9q gain cnv correlated to 'CN_CNMF'.
-
10p gain cnv correlated to 'MRNA_CHIERARCHICAL'.
-
12p gain cnv correlated to 'CN_CNMF'.
-
15q gain cnv correlated to 'CN_CNMF'.
-
16p gain cnv correlated to 'CN_CNMF'.
-
16q gain cnv correlated to 'CN_CNMF'.
-
17p gain cnv correlated to 'MRNA_CNMF' and 'CN_CNMF'.
-
17q gain cnv correlated to 'CN_CNMF'.
-
18p gain cnv correlated to 'MRNA_CNMF' and 'CN_CNMF'.
-
18q gain cnv correlated to 'MRNA_CNMF' and 'CN_CNMF'.
-
19p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'RPPA_CHIERARCHICAL'.
-
19q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
-
20p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', and 'CN_CNMF'.
-
20q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', and 'CN_CNMF'.
-
21q gain cnv correlated to 'CN_CNMF'.
-
22q gain cnv correlated to 'MRNA_CNMF' and 'CN_CNMF'.
-
2p loss cnv correlated to 'CN_CNMF'.
-
2q loss cnv correlated to 'CN_CNMF'.
-
3p loss cnv correlated to 'CN_CNMF'.
-
3q loss cnv correlated to 'CN_CNMF'.
-
5p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
-
5q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
-
6p loss cnv correlated to 'CN_CNMF'.
-
6q loss cnv correlated to 'CN_CNMF'.
-
10p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', and 'CN_CNMF'.
-
10q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', and 'RPPA_CNMF'.
-
11p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
-
11q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
-
12q loss cnv correlated to 'CN_CNMF'.
-
13q loss cnv correlated to 'MRNA_CNMF' and 'CN_CNMF'.
-
14q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
-
15q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
-
17p loss cnv correlated to 'CN_CNMF'.
-
17q loss cnv correlated to 'CN_CNMF'.
-
18p loss cnv correlated to 'CN_CNMF'.
-
18q loss cnv correlated to 'CN_CNMF'.
-
20p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
-
20q loss cnv correlated to 'MRNA_CHIERARCHICAL' and 'CN_CNMF'.
-
21q loss cnv correlated to 'CN_CNMF'.
-
22q loss cnv correlated to 'CN_CNMF'.
-
xq loss cnv correlated to 'CN_CNMF'.
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
MIR CNMF |
MIR CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
7p gain | 463 (81%) | 108 |
1e-05 (0.00774) |
1e-05 (0.00774) |
0.00039 (0.262) |
1e-05 (0.00774) |
1e-05 (0.00774) |
0.00172 (1.00) |
0.00207 (1.00) |
0.0025 (1.00) |
0.0145 (1.00) |
3e-05 (0.0215) |
7q gain | 469 (82%) | 102 |
1e-05 (0.00774) |
1e-05 (0.00774) |
0.00106 (0.694) |
0.00012 (0.0829) |
1e-05 (0.00774) |
0.00016 (0.109) |
0.104 (1.00) |
0.044 (1.00) |
0.055 (1.00) |
0.00166 (1.00) |
10q loss | 488 (85%) | 83 |
1e-05 (0.00774) |
1e-05 (0.00774) |
0.0057 (1.00) |
0.00012 (0.0829) |
1e-05 (0.00774) |
0.00238 (1.00) |
0.00012 (0.0829) |
0.00442 (1.00) |
0.26 (1.00) |
0.0218 (1.00) |
19p gain | 224 (39%) | 347 |
1e-05 (0.00774) |
3e-05 (0.0215) |
0.0809 (1.00) |
0.00043 (0.287) |
1e-05 (0.00774) |
0.00246 (1.00) |
0.00908 (1.00) |
3e-05 (0.0215) |
0.19 (1.00) |
0.655 (1.00) |
20p gain | 220 (39%) | 351 |
1e-05 (0.00774) |
1e-05 (0.00774) |
0.00437 (1.00) |
1e-05 (0.00774) |
1e-05 (0.00774) |
0.101 (1.00) |
0.0531 (1.00) |
0.00192 (1.00) |
0.796 (1.00) |
0.117 (1.00) |
20q gain | 218 (38%) | 353 |
1e-05 (0.00774) |
1e-05 (0.00774) |
0.00286 (1.00) |
1e-05 (0.00774) |
2e-05 (0.0144) |
0.0292 (1.00) |
0.0358 (1.00) |
0.00102 (0.67) |
0.797 (1.00) |
0.121 (1.00) |
10p loss | 477 (84%) | 94 |
1e-05 (0.00774) |
1e-05 (0.00774) |
0.0114 (1.00) |
0.00014 (0.0963) |
1e-05 (0.00774) |
0.0341 (1.00) |
0.00216 (1.00) |
0.0167 (1.00) |
0.223 (1.00) |
0.0131 (1.00) |
8q gain | 59 (10%) | 512 |
1e-05 (0.00774) |
2e-05 (0.0144) |
0.0405 (1.00) |
0.452 (1.00) |
1e-05 (0.00774) |
0.198 (1.00) |
0.435 (1.00) |
0.754 (1.00) |
0.125 (1.00) |
0.515 (1.00) |
19q gain | 197 (35%) | 374 |
1e-05 (0.00774) |
1e-05 (0.00774) |
0.116 (1.00) |
0.00425 (1.00) |
1e-05 (0.00774) |
0.0187 (1.00) |
0.0467 (1.00) |
0.00099 (0.652) |
0.0628 (1.00) |
0.341 (1.00) |
5p loss | 42 (7%) | 529 |
1e-05 (0.00774) |
3e-05 (0.0215) |
0.00182 (1.00) |
0.0957 (1.00) |
0.00016 (0.109) |
0.0354 (1.00) |
0.939 (1.00) |
0.544 (1.00) |
0.342 (1.00) |
0.0521 (1.00) |
5q loss | 43 (8%) | 528 |
5e-05 (0.0351) |
4e-05 (0.0284) |
0.00104 (0.682) |
0.186 (1.00) |
0.00014 (0.0963) |
0.035 (1.00) |
0.943 (1.00) |
0.626 (1.00) |
0.222 (1.00) |
0.0428 (1.00) |
11p loss | 97 (17%) | 474 |
1e-05 (0.00774) |
1e-05 (0.00774) |
0.83 (1.00) |
0.0142 (1.00) |
1e-05 (0.00774) |
0.0258 (1.00) |
0.73 (1.00) |
0.159 (1.00) |
0.0917 (1.00) |
0.0857 (1.00) |
11q loss | 92 (16%) | 479 |
1e-05 (0.00774) |
9e-05 (0.0625) |
0.934 (1.00) |
0.0609 (1.00) |
1e-05 (0.00774) |
0.276 (1.00) |
0.935 (1.00) |
0.569 (1.00) |
0.345 (1.00) |
0.536 (1.00) |
14q loss | 146 (26%) | 425 |
1e-05 (0.00774) |
8e-05 (0.0557) |
0.447 (1.00) |
0.483 (1.00) |
1e-05 (0.00774) |
0.0135 (1.00) |
0.813 (1.00) |
0.0931 (1.00) |
0.106 (1.00) |
0.601 (1.00) |
15q loss | 102 (18%) | 469 |
5e-05 (0.0351) |
2e-05 (0.0144) |
0.00378 (1.00) |
0.0038 (1.00) |
1e-05 (0.00774) |
0.00222 (1.00) |
0.032 (1.00) |
0.0117 (1.00) |
0.00336 (1.00) |
0.022 (1.00) |
20p loss | 18 (3%) | 553 |
0.00021 (0.142) |
3e-05 (0.0215) |
0.0361 (1.00) |
0.0949 (1.00) |
5e-05 (0.0351) |
0.413 (1.00) |
0.46 (1.00) |
0.0104 (1.00) |
0.00207 (1.00) |
|
8p gain | 52 (9%) | 519 |
4e-05 (0.0284) |
0.00065 (0.432) |
0.0631 (1.00) |
0.557 (1.00) |
1e-05 (0.00774) |
0.0887 (1.00) |
0.433 (1.00) |
0.757 (1.00) |
0.139 (1.00) |
0.674 (1.00) |
17p gain | 48 (8%) | 523 |
0.00037 (0.249) |
0.02 (1.00) |
0.0797 (1.00) |
0.04 (1.00) |
8e-05 (0.0557) |
0.0573 (1.00) |
0.15 (1.00) |
0.237 (1.00) |
0.338 (1.00) |
0.391 (1.00) |
18p gain | 58 (10%) | 513 |
1e-05 (0.00774) |
0.00039 (0.262) |
0.157 (1.00) |
0.367 (1.00) |
1e-05 (0.00774) |
0.377 (1.00) |
0.423 (1.00) |
0.15 (1.00) |
0.019 (1.00) |
0.0974 (1.00) |
18q gain | 58 (10%) | 513 |
1e-05 (0.00774) |
0.00073 (0.485) |
0.159 (1.00) |
0.432 (1.00) |
1e-05 (0.00774) |
0.515 (1.00) |
0.692 (1.00) |
0.479 (1.00) |
0.0186 (1.00) |
0.112 (1.00) |
22q gain | 34 (6%) | 537 |
1e-05 (0.00774) |
0.00308 (1.00) |
0.469 (1.00) |
0.216 (1.00) |
0.0002 (0.136) |
0.186 (1.00) |
0.211 (1.00) |
0.0353 (1.00) |
0.244 (1.00) |
0.193 (1.00) |
13q loss | 183 (32%) | 388 |
4e-05 (0.0284) |
0.00165 (1.00) |
0.75 (1.00) |
0.589 (1.00) |
1e-05 (0.00774) |
0.00119 (0.776) |
0.595 (1.00) |
0.017 (1.00) |
0.0495 (1.00) |
0.401 (1.00) |
20q loss | 16 (3%) | 555 |
0.00154 (1.00) |
0.00015 (0.103) |
0.364 (1.00) |
0.266 (1.00) |
0.00015 (0.103) |
0.415 (1.00) |
0.459 (1.00) |
0.0387 (1.00) |
0.0127 (1.00) |
|
1p gain | 82 (14%) | 489 |
0.607 (1.00) |
0.131 (1.00) |
0.484 (1.00) |
0.247 (1.00) |
1e-05 (0.00774) |
0.675 (1.00) |
0.501 (1.00) |
0.0843 (1.00) |
0.342 (1.00) |
0.273 (1.00) |
1q gain | 89 (16%) | 482 |
0.0767 (1.00) |
0.0886 (1.00) |
0.129 (1.00) |
0.627 (1.00) |
1e-05 (0.00774) |
0.26 (1.00) |
0.579 (1.00) |
0.257 (1.00) |
0.826 (1.00) |
0.505 (1.00) |
2p gain | 36 (6%) | 535 |
0.457 (1.00) |
0.682 (1.00) |
0.376 (1.00) |
0.158 (1.00) |
0.00016 (0.109) |
0.188 (1.00) |
0.578 (1.00) |
0.415 (1.00) |
1 (1.00) |
0.536 (1.00) |
2q gain | 35 (6%) | 536 |
0.64 (1.00) |
0.864 (1.00) |
0.162 (1.00) |
0.202 (1.00) |
0.0002 (0.136) |
0.189 (1.00) |
0.921 (1.00) |
0.413 (1.00) |
0.771 (1.00) |
0.177 (1.00) |
3p gain | 57 (10%) | 514 |
0.00046 (0.307) |
0.0282 (1.00) |
0.668 (1.00) |
0.0263 (1.00) |
1e-05 (0.00774) |
0.041 (1.00) |
0.635 (1.00) |
0.341 (1.00) |
0.812 (1.00) |
0.255 (1.00) |
3q gain | 62 (11%) | 509 |
0.0009 (0.595) |
0.0964 (1.00) |
0.923 (1.00) |
0.0765 (1.00) |
1e-05 (0.00774) |
0.0164 (1.00) |
0.625 (1.00) |
0.304 (1.00) |
0.516 (1.00) |
0.151 (1.00) |
5p gain | 49 (9%) | 522 |
0.115 (1.00) |
0.156 (1.00) |
0.176 (1.00) |
0.344 (1.00) |
1e-05 (0.00774) |
0.621 (1.00) |
0.281 (1.00) |
0.526 (1.00) |
0.128 (1.00) |
0.231 (1.00) |
5q gain | 41 (7%) | 530 |
0.141 (1.00) |
0.232 (1.00) |
0.118 (1.00) |
0.055 (1.00) |
5e-05 (0.0351) |
0.381 (1.00) |
0.39 (1.00) |
0.296 (1.00) |
0.169 (1.00) |
0.399 (1.00) |
9p gain | 47 (8%) | 524 |
0.00334 (1.00) |
0.0305 (1.00) |
0.702 (1.00) |
0.434 (1.00) |
5e-05 (0.0351) |
0.158 (1.00) |
0.798 (1.00) |
0.366 (1.00) |
0.429 (1.00) |
0.113 (1.00) |
9q gain | 72 (13%) | 499 |
0.0883 (1.00) |
0.0506 (1.00) |
0.561 (1.00) |
0.127 (1.00) |
7e-05 (0.0489) |
0.0357 (1.00) |
0.32 (1.00) |
0.385 (1.00) |
0.669 (1.00) |
0.0784 (1.00) |
10p gain | 12 (2%) | 559 |
0.00106 (0.694) |
9e-05 (0.0625) |
0.118 (1.00) |
0.0589 (1.00) |
0.0029 (1.00) |
0.308 (1.00) |
0.562 (1.00) |
|||
12p gain | 59 (10%) | 512 |
0.671 (1.00) |
0.794 (1.00) |
0.644 (1.00) |
0.165 (1.00) |
4e-05 (0.0284) |
0.592 (1.00) |
0.234 (1.00) |
0.664 (1.00) |
0.00413 (1.00) |
0.0759 (1.00) |
15q gain | 24 (4%) | 547 |
0.0609 (1.00) |
0.11 (1.00) |
0.568 (1.00) |
0.134 (1.00) |
9e-05 (0.0625) |
0.536 (1.00) |
0.341 (1.00) |
0.035 (1.00) |
0.385 (1.00) |
|
16p gain | 38 (7%) | 533 |
0.00777 (1.00) |
0.0648 (1.00) |
0.413 (1.00) |
0.27 (1.00) |
2e-05 (0.0144) |
0.617 (1.00) |
0.476 (1.00) |
1 (1.00) |
1 (1.00) |
|
16q gain | 37 (6%) | 534 |
0.0188 (1.00) |
0.00551 (1.00) |
0.358 (1.00) |
0.0667 (1.00) |
0.00016 (0.109) |
0.754 (1.00) |
0.418 (1.00) |
0.423 (1.00) |
0.736 (1.00) |
|
17q gain | 59 (10%) | 512 |
0.00101 (0.665) |
0.0441 (1.00) |
0.15 (1.00) |
0.0437 (1.00) |
1e-05 (0.00774) |
0.179 (1.00) |
0.0787 (1.00) |
0.161 (1.00) |
0.945 (1.00) |
0.617 (1.00) |
21q gain | 63 (11%) | 508 |
0.00127 (0.827) |
0.00728 (1.00) |
0.0118 (1.00) |
0.00389 (1.00) |
0.00034 (0.229) |
0.166 (1.00) |
0.318 (1.00) |
0.0267 (1.00) |
0.0187 (1.00) |
0.333 (1.00) |
2p loss | 32 (6%) | 539 |
0.0341 (1.00) |
0.0341 (1.00) |
0.312 (1.00) |
0.663 (1.00) |
0.00036 (0.242) |
0.00505 (1.00) |
0.935 (1.00) |
0.218 (1.00) |
0.241 (1.00) |
0.226 (1.00) |
2q loss | 32 (6%) | 539 |
0.0337 (1.00) |
0.0346 (1.00) |
0.312 (1.00) |
0.663 (1.00) |
0.00034 (0.229) |
0.00537 (1.00) |
0.827 (1.00) |
0.133 (1.00) |
0.083 (1.00) |
0.0748 (1.00) |
3p loss | 40 (7%) | 531 |
0.91 (1.00) |
0.789 (1.00) |
0.717 (1.00) |
0.149 (1.00) |
0.00018 (0.122) |
0.0574 (1.00) |
0.236 (1.00) |
0.901 (1.00) |
0.639 (1.00) |
0.231 (1.00) |
3q loss | 34 (6%) | 537 |
0.23 (1.00) |
0.129 (1.00) |
0.509 (1.00) |
0.678 (1.00) |
4e-05 (0.0284) |
0.118 (1.00) |
0.788 (1.00) |
0.321 (1.00) |
0.889 (1.00) |
0.183 (1.00) |
6p loss | 86 (15%) | 485 |
0.567 (1.00) |
0.334 (1.00) |
0.772 (1.00) |
0.706 (1.00) |
1e-05 (0.00774) |
0.306 (1.00) |
0.794 (1.00) |
0.301 (1.00) |
0.871 (1.00) |
0.596 (1.00) |
6q loss | 124 (22%) | 447 |
0.94 (1.00) |
0.578 (1.00) |
0.568 (1.00) |
0.941 (1.00) |
1e-05 (0.00774) |
0.19 (1.00) |
0.969 (1.00) |
0.646 (1.00) |
0.498 (1.00) |
0.293 (1.00) |
12q loss | 58 (10%) | 513 |
0.107 (1.00) |
0.0624 (1.00) |
0.352 (1.00) |
0.59 (1.00) |
4e-05 (0.0284) |
0.517 (1.00) |
0.181 (1.00) |
0.395 (1.00) |
1 (1.00) |
0.662 (1.00) |
17p loss | 64 (11%) | 507 |
0.0201 (1.00) |
0.0212 (1.00) |
0.653 (1.00) |
0.583 (1.00) |
1e-05 (0.00774) |
0.0902 (1.00) |
0.212 (1.00) |
0.35 (1.00) |
0.302 (1.00) |
0.705 (1.00) |
17q loss | 42 (7%) | 529 |
0.005 (1.00) |
0.0597 (1.00) |
0.253 (1.00) |
0.0425 (1.00) |
3e-05 (0.0215) |
0.254 (1.00) |
0.481 (1.00) |
0.34 (1.00) |
0.145 (1.00) |
0.109 (1.00) |
18p loss | 69 (12%) | 502 |
0.0479 (1.00) |
0.0318 (1.00) |
0.359 (1.00) |
0.22 (1.00) |
3e-05 (0.0215) |
0.27 (1.00) |
0.0632 (1.00) |
0.0066 (1.00) |
0.135 (1.00) |
0.599 (1.00) |
18q loss | 61 (11%) | 510 |
0.145 (1.00) |
0.00695 (1.00) |
0.621 (1.00) |
0.238 (1.00) |
7e-05 (0.0489) |
0.26 (1.00) |
0.00958 (1.00) |
0.00334 (1.00) |
0.416 (1.00) |
0.12 (1.00) |
21q loss | 40 (7%) | 531 |
0.0213 (1.00) |
0.00112 (0.731) |
0.0345 (1.00) |
0.319 (1.00) |
0.00025 (0.169) |
0.0672 (1.00) |
0.0119 (1.00) |
0.0838 (1.00) |
0.824 (1.00) |
1 (1.00) |
22q loss | 179 (31%) | 392 |
0.721 (1.00) |
0.606 (1.00) |
0.209 (1.00) |
0.933 (1.00) |
1e-05 (0.00774) |
0.159 (1.00) |
0.908 (1.00) |
0.137 (1.00) |
0.201 (1.00) |
0.0927 (1.00) |
xq loss | 105 (18%) | 466 |
0.0206 (1.00) |
0.0243 (1.00) |
0.147 (1.00) |
0.16 (1.00) |
1e-05 (0.00774) |
0.124 (1.00) |
0.96 (1.00) |
0.554 (1.00) |
0.415 (1.00) |
0.96 (1.00) |
4p gain | 36 (6%) | 535 |
0.241 (1.00) |
0.614 (1.00) |
0.486 (1.00) |
0.519 (1.00) |
0.00298 (1.00) |
0.826 (1.00) |
0.758 (1.00) |
0.551 (1.00) |
0.616 (1.00) |
0.791 (1.00) |
4q gain | 33 (6%) | 538 |
0.312 (1.00) |
0.319 (1.00) |
0.495 (1.00) |
0.541 (1.00) |
0.0109 (1.00) |
0.622 (1.00) |
0.927 (1.00) |
0.687 (1.00) |
0.366 (1.00) |
0.663 (1.00) |
6p gain | 24 (4%) | 547 |
0.0121 (1.00) |
0.118 (1.00) |
0.878 (1.00) |
0.16 (1.00) |
0.0773 (1.00) |
0.319 (1.00) |
0.812 (1.00) |
0.583 (1.00) |
1 (1.00) |
1 (1.00) |
6q gain | 23 (4%) | 548 |
0.00174 (1.00) |
0.037 (1.00) |
0.784 (1.00) |
0.103 (1.00) |
0.00674 (1.00) |
0.0648 (1.00) |
0.932 (1.00) |
0.529 (1.00) |
0.81 (1.00) |
1 (1.00) |
10q gain | 3 (1%) | 568 |
0.557 (1.00) |
1 (1.00) |
0.0515 (1.00) |
0.796 (1.00) |
0.196 (1.00) |
|||||
11p gain | 17 (3%) | 554 |
0.904 (1.00) |
0.88 (1.00) |
0.243 (1.00) |
0.943 (1.00) |
0.22 (1.00) |
0.869 (1.00) |
0.532 (1.00) |
0.695 (1.00) |
1 (1.00) |
|
11q gain | 14 (2%) | 557 |
0.185 (1.00) |
0.0651 (1.00) |
0.216 (1.00) |
0.362 (1.00) |
0.123 (1.00) |
0.87 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
|
12q gain | 48 (8%) | 523 |
0.523 (1.00) |
0.954 (1.00) |
0.538 (1.00) |
0.00993 (1.00) |
0.00074 (0.49) |
0.751 (1.00) |
0.312 (1.00) |
0.299 (1.00) |
0.0222 (1.00) |
0.124 (1.00) |
13q gain | 10 (2%) | 561 |
0.0532 (1.00) |
0.497 (1.00) |
0.181 (1.00) |
0.822 (1.00) |
0.017 (1.00) |
0.367 (1.00) |
0.893 (1.00) |
1 (1.00) |
0.423 (1.00) |
1 (1.00) |
14q gain | 22 (4%) | 549 |
0.431 (1.00) |
0.778 (1.00) |
0.0102 (1.00) |
0.806 (1.00) |
0.828 (1.00) |
0.47 (1.00) |
0.858 (1.00) |
0.426 (1.00) |
0.328 (1.00) |
|
xq gain | 16 (3%) | 555 |
0.252 (1.00) |
0.948 (1.00) |
0.985 (1.00) |
0.361 (1.00) |
0.66 (1.00) |
0.624 (1.00) |
0.79 (1.00) |
1 (1.00) |
0.0388 (1.00) |
0.259 (1.00) |
1p loss | 16 (3%) | 555 |
0.639 (1.00) |
0.828 (1.00) |
0.94 (1.00) |
0.195 (1.00) |
0.0877 (1.00) |
0.677 (1.00) |
0.341 (1.00) |
0.18 (1.00) |
0.11 (1.00) |
0.0184 (1.00) |
1q loss | 15 (3%) | 556 |
0.831 (1.00) |
0.978 (1.00) |
0.854 (1.00) |
0.363 (1.00) |
0.368 (1.00) |
0.678 (1.00) |
0.34 (1.00) |
0.209 (1.00) |
0.518 (1.00) |
0.0835 (1.00) |
4p loss | 54 (9%) | 517 |
0.0794 (1.00) |
0.00331 (1.00) |
0.0337 (1.00) |
0.225 (1.00) |
0.00949 (1.00) |
1 (1.00) |
0.294 (1.00) |
0.121 (1.00) |
0.746 (1.00) |
1 (1.00) |
4q loss | 55 (10%) | 516 |
0.00098 (0.647) |
0.00064 (0.426) |
0.0191 (1.00) |
0.152 (1.00) |
0.0004 (0.268) |
0.0106 (1.00) |
0.733 (1.00) |
0.482 (1.00) |
0.56 (1.00) |
1 (1.00) |
7p loss | 8 (1%) | 563 |
0.0221 (1.00) |
0.0341 (1.00) |
0.457 (1.00) |
0.041 (1.00) |
0.205 (1.00) |
|||||
7q loss | 6 (1%) | 565 |
0.0995 (1.00) |
0.304 (1.00) |
0.941 (1.00) |
0.125 (1.00) |
0.591 (1.00) |
|||||
8p loss | 58 (10%) | 513 |
0.546 (1.00) |
0.441 (1.00) |
0.18 (1.00) |
0.777 (1.00) |
0.0678 (1.00) |
0.591 (1.00) |
0.906 (1.00) |
0.95 (1.00) |
0.575 (1.00) |
0.391 (1.00) |
8q loss | 42 (7%) | 529 |
0.618 (1.00) |
0.15 (1.00) |
0.0219 (1.00) |
0.808 (1.00) |
0.0142 (1.00) |
0.258 (1.00) |
0.859 (1.00) |
0.655 (1.00) |
0.457 (1.00) |
0.147 (1.00) |
9p loss | 200 (35%) | 371 |
0.00917 (1.00) |
0.134 (1.00) |
0.527 (1.00) |
0.446 (1.00) |
0.688 (1.00) |
0.569 (1.00) |
0.618 (1.00) |
0.0467 (1.00) |
0.022 (1.00) |
0.00885 (1.00) |
9q loss | 91 (16%) | 480 |
0.373 (1.00) |
0.0692 (1.00) |
0.115 (1.00) |
0.206 (1.00) |
0.333 (1.00) |
0.324 (1.00) |
0.366 (1.00) |
0.118 (1.00) |
0.753 (1.00) |
0.179 (1.00) |
12p loss | 59 (10%) | 512 |
0.0884 (1.00) |
0.0653 (1.00) |
0.473 (1.00) |
0.809 (1.00) |
0.00274 (1.00) |
0.9 (1.00) |
0.155 (1.00) |
0.0579 (1.00) |
1 (1.00) |
0.662 (1.00) |
16p loss | 63 (11%) | 508 |
0.287 (1.00) |
0.853 (1.00) |
0.66 (1.00) |
0.735 (1.00) |
0.0201 (1.00) |
0.43 (1.00) |
0.454 (1.00) |
0.189 (1.00) |
0.565 (1.00) |
0.647 (1.00) |
16q loss | 83 (15%) | 488 |
0.0618 (1.00) |
0.43 (1.00) |
0.463 (1.00) |
0.898 (1.00) |
0.0102 (1.00) |
0.822 (1.00) |
0.0478 (1.00) |
0.0182 (1.00) |
0.663 (1.00) |
0.598 (1.00) |
19p loss | 25 (4%) | 546 |
0.00207 (1.00) |
0.00719 (1.00) |
0.149 (1.00) |
0.41 (1.00) |
0.014 (1.00) |
0.00203 (1.00) |
0.0199 (1.00) |
0.0107 (1.00) |
0.839 (1.00) |
0.802 (1.00) |
19q loss | 33 (6%) | 538 |
0.00211 (1.00) |
0.0104 (1.00) |
0.392 (1.00) |
0.104 (1.00) |
0.00073 (0.485) |
0.0904 (1.00) |
0.0804 (1.00) |
0.337 (1.00) |
0.782 (1.00) |
0.485 (1.00) |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
1P GAIN MUTATED | 50 | 12 | 20 |
1P GAIN WILD-TYPE | 109 | 200 | 180 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
1Q GAIN MUTATED | 57 | 10 | 22 |
1Q GAIN WILD-TYPE | 102 | 202 | 178 |
P value = 0.00016 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
2P GAIN MUTATED | 22 | 7 | 7 |
2P GAIN WILD-TYPE | 137 | 205 | 193 |
P value = 2e-04 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
2Q GAIN MUTATED | 21 | 7 | 7 |
2Q GAIN WILD-TYPE | 138 | 205 | 193 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
3P GAIN MUTATED | 34 | 4 | 19 |
3P GAIN WILD-TYPE | 125 | 208 | 181 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
3Q GAIN MUTATED | 35 | 6 | 21 |
3Q GAIN WILD-TYPE | 124 | 206 | 179 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
5P GAIN MUTATED | 28 | 6 | 15 |
5P GAIN WILD-TYPE | 131 | 206 | 185 |
P value = 5e-05 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
5Q GAIN MUTATED | 24 | 6 | 11 |
5Q GAIN WILD-TYPE | 135 | 206 | 189 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
7P GAIN MUTATED | 135 | 65 | 128 | 82 |
7P GAIN WILD-TYPE | 12 | 31 | 24 | 31 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
7P GAIN MUTATED | 132 | 55 | 85 | 138 |
7P GAIN WILD-TYPE | 16 | 47 | 15 | 20 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
7P GAIN MUTATED | 214 | 113 | 117 |
7P GAIN WILD-TYPE | 79 | 11 | 12 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
7P GAIN MUTATED | 143 | 188 | 132 |
7P GAIN WILD-TYPE | 16 | 24 | 68 |
P value = 3e-05 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
7P GAIN MUTATED | 16 | 84 | 20 |
7P GAIN WILD-TYPE | 14 | 8 | 5 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
7Q GAIN MUTATED | 135 | 62 | 129 | 87 |
7Q GAIN WILD-TYPE | 12 | 34 | 23 | 26 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
7Q GAIN MUTATED | 130 | 61 | 84 | 138 |
7Q GAIN WILD-TYPE | 18 | 41 | 16 | 20 |
P value = 0.00012 (Fisher's exact test), Q value = 0.083
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
7Q GAIN MUTATED | 221 | 112 | 114 |
7Q GAIN WILD-TYPE | 72 | 12 | 15 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
7Q GAIN MUTATED | 139 | 191 | 139 |
7Q GAIN WILD-TYPE | 20 | 21 | 61 |
P value = 0.00016 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 47 | 33 |
7Q GAIN MUTATED | 39 | 44 | 22 |
7Q GAIN WILD-TYPE | 1 | 3 | 11 |
P value = 4e-05 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
8P GAIN MUTATED | 7 | 18 | 6 | 17 |
8P GAIN WILD-TYPE | 140 | 78 | 146 | 96 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
8P GAIN MUTATED | 31 | 4 | 17 |
8P GAIN WILD-TYPE | 128 | 208 | 183 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
8Q GAIN MUTATED | 7 | 20 | 7 | 20 |
8Q GAIN WILD-TYPE | 140 | 76 | 145 | 93 |
P value = 2e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
8Q GAIN MUTATED | 9 | 26 | 4 | 15 |
8Q GAIN WILD-TYPE | 139 | 76 | 96 | 143 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
8Q GAIN MUTATED | 30 | 6 | 23 |
8Q GAIN WILD-TYPE | 129 | 206 | 177 |
P value = 5e-05 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
9P GAIN MUTATED | 25 | 6 | 16 |
9P GAIN WILD-TYPE | 134 | 206 | 184 |
P value = 7e-05 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
9Q GAIN MUTATED | 34 | 13 | 25 |
9Q GAIN WILD-TYPE | 125 | 199 | 175 |
P value = 9e-05 (Fisher's exact test), Q value = 0.062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
10P GAIN MUTATED | 2 | 9 | 0 | 1 |
10P GAIN WILD-TYPE | 146 | 93 | 100 | 157 |
P value = 4e-05 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
12P GAIN MUTATED | 31 | 10 | 18 |
12P GAIN WILD-TYPE | 128 | 202 | 182 |
P value = 9e-05 (Fisher's exact test), Q value = 0.062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
15Q GAIN MUTATED | 14 | 1 | 9 |
15Q GAIN WILD-TYPE | 145 | 211 | 191 |
P value = 2e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
16P GAIN MUTATED | 21 | 3 | 14 |
16P GAIN WILD-TYPE | 138 | 209 | 186 |
P value = 0.00016 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
16Q GAIN MUTATED | 20 | 4 | 13 |
16Q GAIN WILD-TYPE | 139 | 208 | 187 |
P value = 0.00037 (Fisher's exact test), Q value = 0.25
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
17P GAIN MUTATED | 9 | 14 | 4 | 16 |
17P GAIN WILD-TYPE | 138 | 82 | 148 | 97 |
P value = 8e-05 (Fisher's exact test), Q value = 0.056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
17P GAIN MUTATED | 27 | 9 | 12 |
17P GAIN WILD-TYPE | 132 | 203 | 188 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
17Q GAIN MUTATED | 33 | 11 | 15 |
17Q GAIN WILD-TYPE | 126 | 201 | 185 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
18P GAIN MUTATED | 10 | 25 | 5 | 15 |
18P GAIN WILD-TYPE | 137 | 71 | 147 | 98 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
18P GAIN MUTATED | 29 | 3 | 26 |
18P GAIN WILD-TYPE | 130 | 209 | 174 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
18Q GAIN MUTATED | 9 | 24 | 6 | 16 |
18Q GAIN WILD-TYPE | 138 | 72 | 146 | 97 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
18Q GAIN MUTATED | 31 | 4 | 23 |
18Q GAIN WILD-TYPE | 128 | 208 | 177 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
19P GAIN MUTATED | 52 | 35 | 91 | 21 |
19P GAIN WILD-TYPE | 95 | 61 | 61 | 92 |
P value = 3e-05 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
19P GAIN MUTATED | 62 | 26 | 58 | 53 |
19P GAIN WILD-TYPE | 86 | 76 | 42 | 105 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
19P GAIN MUTATED | 41 | 138 | 45 |
19P GAIN WILD-TYPE | 118 | 74 | 155 |
P value = 3e-05 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 76 | 56 |
19P GAIN MUTATED | 22 | 18 | 35 |
19P GAIN WILD-TYPE | 47 | 58 | 21 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
19Q GAIN MUTATED | 46 | 28 | 85 | 16 |
19Q GAIN WILD-TYPE | 101 | 68 | 67 | 97 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
19Q GAIN MUTATED | 55 | 18 | 55 | 47 |
19Q GAIN WILD-TYPE | 93 | 84 | 45 | 111 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
19Q GAIN MUTATED | 35 | 127 | 35 |
19Q GAIN WILD-TYPE | 124 | 85 | 165 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
20P GAIN MUTATED | 51 | 26 | 86 | 29 |
20P GAIN WILD-TYPE | 96 | 70 | 66 | 84 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
20P GAIN MUTATED | 55 | 21 | 64 | 52 |
20P GAIN WILD-TYPE | 93 | 81 | 36 | 106 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
20P GAIN MUTATED | 85 | 58 | 69 |
20P GAIN WILD-TYPE | 208 | 66 | 60 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
20P GAIN MUTATED | 60 | 109 | 51 |
20P GAIN WILD-TYPE | 99 | 103 | 149 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
20Q GAIN MUTATED | 50 | 28 | 86 | 27 |
20Q GAIN WILD-TYPE | 97 | 68 | 66 | 86 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
20Q GAIN MUTATED | 58 | 22 | 62 | 49 |
20Q GAIN WILD-TYPE | 90 | 80 | 38 | 109 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
20Q GAIN MUTATED | 85 | 57 | 68 |
20Q GAIN WILD-TYPE | 208 | 67 | 61 |
P value = 2e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
20Q GAIN MUTATED | 58 | 108 | 52 |
20Q GAIN WILD-TYPE | 101 | 104 | 148 |
P value = 0.00034 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
21Q GAIN MUTATED | 26 | 10 | 27 |
21Q GAIN WILD-TYPE | 133 | 202 | 173 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
22Q GAIN MUTATED | 6 | 14 | 0 | 11 |
22Q GAIN WILD-TYPE | 141 | 82 | 152 | 102 |
P value = 2e-04 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
22Q GAIN MUTATED | 18 | 3 | 13 |
22Q GAIN WILD-TYPE | 141 | 209 | 187 |
P value = 0.00036 (Fisher's exact test), Q value = 0.24
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
2P LOSS MUTATED | 17 | 3 | 12 |
2P LOSS WILD-TYPE | 142 | 209 | 188 |
P value = 0.00034 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
2Q LOSS MUTATED | 17 | 3 | 12 |
2Q LOSS WILD-TYPE | 142 | 209 | 188 |
P value = 0.00018 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
3P LOSS MUTATED | 19 | 4 | 17 |
3P LOSS WILD-TYPE | 140 | 208 | 183 |
P value = 4e-05 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
3Q LOSS MUTATED | 18 | 2 | 14 |
3Q LOSS WILD-TYPE | 141 | 210 | 186 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
5P LOSS MUTATED | 5 | 20 | 6 | 9 |
5P LOSS WILD-TYPE | 142 | 76 | 146 | 104 |
P value = 3e-05 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
5P LOSS MUTATED | 6 | 22 | 5 | 7 |
5P LOSS WILD-TYPE | 142 | 80 | 95 | 151 |
P value = 0.00016 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
5P LOSS MUTATED | 16 | 4 | 22 |
5P LOSS WILD-TYPE | 143 | 208 | 178 |
P value = 5e-05 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
5Q LOSS MUTATED | 6 | 19 | 5 | 11 |
5Q LOSS WILD-TYPE | 141 | 77 | 147 | 102 |
P value = 4e-05 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
5Q LOSS MUTATED | 9 | 21 | 4 | 7 |
5Q LOSS WILD-TYPE | 139 | 81 | 96 | 151 |
P value = 0.00014 (Fisher's exact test), Q value = 0.096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
5Q LOSS MUTATED | 17 | 4 | 22 |
5Q LOSS WILD-TYPE | 142 | 208 | 178 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
6P LOSS MUTATED | 51 | 12 | 23 |
6P LOSS WILD-TYPE | 108 | 200 | 177 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
6Q LOSS MUTATED | 62 | 28 | 34 |
6Q LOSS WILD-TYPE | 97 | 184 | 166 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
10P LOSS MUTATED | 132 | 64 | 140 | 84 |
10P LOSS WILD-TYPE | 15 | 32 | 12 | 29 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
10P LOSS MUTATED | 127 | 63 | 93 | 137 |
10P LOSS WILD-TYPE | 21 | 39 | 7 | 21 |
P value = 0.00014 (Fisher's exact test), Q value = 0.096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
10P LOSS MUTATED | 227 | 108 | 120 |
10P LOSS WILD-TYPE | 66 | 16 | 9 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
10P LOSS MUTATED | 149 | 204 | 124 |
10P LOSS WILD-TYPE | 10 | 8 | 76 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
10Q LOSS MUTATED | 132 | 68 | 146 | 87 |
10Q LOSS WILD-TYPE | 15 | 28 | 6 | 26 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
10Q LOSS MUTATED | 128 | 69 | 97 | 139 |
10Q LOSS WILD-TYPE | 20 | 33 | 3 | 19 |
P value = 0.00012 (Fisher's exact test), Q value = 0.083
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
10Q LOSS MUTATED | 236 | 109 | 123 |
10Q LOSS WILD-TYPE | 57 | 15 | 6 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
10Q LOSS MUTATED | 148 | 206 | 134 |
10Q LOSS WILD-TYPE | 11 | 6 | 66 |
P value = 0.00012 (Fisher's exact test), Q value = 0.083
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 58 | 44 | 45 |
10Q LOSS MUTATED | 50 | 42 | 44 | 41 |
10Q LOSS WILD-TYPE | 4 | 16 | 0 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
11P LOSS MUTATED | 27 | 32 | 9 | 22 |
11P LOSS WILD-TYPE | 120 | 64 | 143 | 91 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
11P LOSS MUTATED | 26 | 36 | 4 | 24 |
11P LOSS WILD-TYPE | 122 | 66 | 96 | 134 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
11P LOSS MUTATED | 54 | 8 | 35 |
11P LOSS WILD-TYPE | 105 | 204 | 165 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
11Q LOSS MUTATED | 31 | 28 | 10 | 18 |
11Q LOSS WILD-TYPE | 116 | 68 | 142 | 95 |
P value = 9e-05 (Fisher's exact test), Q value = 0.062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
11Q LOSS MUTATED | 28 | 28 | 5 | 26 |
11Q LOSS WILD-TYPE | 120 | 74 | 95 | 132 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
11Q LOSS MUTATED | 54 | 10 | 28 |
11Q LOSS WILD-TYPE | 105 | 202 | 172 |
P value = 4e-05 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
12Q LOSS MUTATED | 27 | 8 | 23 |
12Q LOSS WILD-TYPE | 132 | 204 | 177 |
P value = 4e-05 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
13Q LOSS MUTATED | 57 | 35 | 26 | 45 |
13Q LOSS WILD-TYPE | 90 | 61 | 126 | 68 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
13Q LOSS MUTATED | 100 | 20 | 63 |
13Q LOSS WILD-TYPE | 59 | 192 | 137 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
14Q LOSS MUTATED | 46 | 34 | 17 | 39 |
14Q LOSS WILD-TYPE | 101 | 62 | 135 | 74 |
P value = 8e-05 (Fisher's exact test), Q value = 0.056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
14Q LOSS MUTATED | 43 | 36 | 10 | 47 |
14Q LOSS WILD-TYPE | 105 | 66 | 90 | 111 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
14Q LOSS MUTATED | 86 | 9 | 51 |
14Q LOSS WILD-TYPE | 73 | 203 | 149 |
P value = 5e-05 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
15Q LOSS MUTATED | 26 | 26 | 12 | 31 |
15Q LOSS WILD-TYPE | 121 | 70 | 140 | 82 |
P value = 2e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
15Q LOSS MUTATED | 22 | 37 | 7 | 29 |
15Q LOSS WILD-TYPE | 126 | 65 | 93 | 129 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
15Q LOSS MUTATED | 52 | 18 | 32 |
15Q LOSS WILD-TYPE | 107 | 194 | 168 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
17P LOSS MUTATED | 34 | 6 | 24 |
17P LOSS WILD-TYPE | 125 | 206 | 176 |
P value = 3e-05 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
17Q LOSS MUTATED | 23 | 4 | 15 |
17Q LOSS WILD-TYPE | 136 | 208 | 185 |
P value = 3e-05 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
18P LOSS MUTATED | 32 | 10 | 27 |
18P LOSS WILD-TYPE | 127 | 202 | 173 |
P value = 7e-05 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
18Q LOSS MUTATED | 28 | 9 | 24 |
18Q LOSS WILD-TYPE | 131 | 203 | 176 |
P value = 0.00021 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
20P LOSS MUTATED | 4 | 10 | 0 | 3 |
20P LOSS WILD-TYPE | 143 | 86 | 152 | 110 |
P value = 3e-05 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
20P LOSS MUTATED | 5 | 11 | 0 | 1 |
20P LOSS WILD-TYPE | 143 | 91 | 100 | 157 |
P value = 5e-05 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
20P LOSS MUTATED | 12 | 0 | 6 |
20P LOSS WILD-TYPE | 147 | 212 | 194 |
P value = 0.00015 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
20Q LOSS MUTATED | 4 | 10 | 0 | 1 |
20Q LOSS WILD-TYPE | 144 | 92 | 100 | 157 |
P value = 0.00015 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
20Q LOSS MUTATED | 12 | 1 | 3 |
20Q LOSS WILD-TYPE | 147 | 211 | 197 |
P value = 0.00025 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
21Q LOSS MUTATED | 22 | 6 | 12 |
21Q LOSS WILD-TYPE | 137 | 206 | 188 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
22Q LOSS MUTATED | 75 | 46 | 58 |
22Q LOSS WILD-TYPE | 84 | 166 | 142 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 159 | 212 | 200 |
XQ LOSS MUTATED | 57 | 25 | 23 |
XQ LOSS WILD-TYPE | 102 | 187 | 177 |
-
Copy number data file = transformed.cor.cli.txt
-
Molecular subtypes file = GBM-TP.transferedmergedcluster.txt
-
Number of patients = 571
-
Number of significantly arm-level cnvs = 80
-
Number of molecular subtypes = 10
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.