This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.
Testing the association between mutation status of 33 genes and 10 molecular subtypes across 283 patients, 17 significant findings detected with P value < 0.05 and Q value < 0.25.
-
TP53 mutation correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
-
NF1 mutation correlated to 'MRNA_CHIERARCHICAL'.
-
IDH1 mutation correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
-
ATRX mutation correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
-
EGFR mutation correlated to 'CN_CNMF', 'RPPA_CNMF', and 'RPPA_CHIERARCHICAL'.
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
MIR CNMF |
MIR CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
||
nMutated (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
IDH1 | 14 (5%) | 269 |
0.00011 (0.0302) |
1e-05 (0.00286) |
3e-05 (0.00837) |
0.0032 (0.835) |
1e-05 (0.00286) |
0.00107 (0.288) |
0.00348 (0.901) |
0.00109 (0.292) |
0.0007 (0.19) |
1e-05 (0.00286) |
TP53 | 79 (28%) | 204 |
0.00073 (0.197) |
1e-05 (0.00286) |
0.0013 (0.347) |
0.15 (1.00) |
4e-05 (0.0111) |
8e-05 (0.0222) |
0.0382 (1.00) |
0.00902 (1.00) |
0.00181 (0.481) |
0.00181 (0.481) |
ATRX | 16 (6%) | 267 |
0.00235 (0.616) |
2e-05 (0.0056) |
0.00669 (1.00) |
0.0182 (1.00) |
1e-05 (0.00286) |
0.147 (1.00) |
0.00577 (1.00) |
0.0503 (1.00) |
0.00193 (0.51) |
0.00023 (0.0628) |
EGFR | 74 (26%) | 209 |
0.00722 (1.00) |
0.0574 (1.00) |
0.511 (1.00) |
0.139 (1.00) |
1e-05 (0.00286) |
0.0083 (1.00) |
9e-05 (0.0248) |
0.00011 (0.0302) |
0.0417 (1.00) |
0.00579 (1.00) |
NF1 | 29 (10%) | 254 |
0.0811 (1.00) |
0.00025 (0.068) |
0.0251 (1.00) |
0.932 (1.00) |
0.00969 (1.00) |
0.00227 (0.597) |
0.228 (1.00) |
0.00592 (1.00) |
0.565 (1.00) |
0.451 (1.00) |
PIK3R1 | 32 (11%) | 251 |
0.752 (1.00) |
0.191 (1.00) |
0.196 (1.00) |
0.529 (1.00) |
0.133 (1.00) |
0.582 (1.00) |
0.988 (1.00) |
0.678 (1.00) |
0.403 (1.00) |
0.222 (1.00) |
RB1 | 24 (8%) | 259 |
0.0343 (1.00) |
0.0172 (1.00) |
0.134 (1.00) |
0.923 (1.00) |
0.0478 (1.00) |
0.258 (1.00) |
0.492 (1.00) |
0.227 (1.00) |
0.0822 (1.00) |
0.577 (1.00) |
PTEN | 87 (31%) | 196 |
0.116 (1.00) |
0.0742 (1.00) |
0.0266 (1.00) |
0.646 (1.00) |
0.387 (1.00) |
0.836 (1.00) |
0.377 (1.00) |
0.144 (1.00) |
0.27 (1.00) |
0.647 (1.00) |
PIK3CA | 29 (10%) | 254 |
0.79 (1.00) |
0.163 (1.00) |
0.569 (1.00) |
1 (1.00) |
0.904 (1.00) |
0.17 (1.00) |
0.756 (1.00) |
0.314 (1.00) |
0.266 (1.00) |
0.237 (1.00) |
STAG2 | 12 (4%) | 271 |
0.395 (1.00) |
0.698 (1.00) |
0.715 (1.00) |
0.592 (1.00) |
0.757 (1.00) |
0.853 (1.00) |
0.00709 (1.00) |
0.392 (1.00) |
0.478 (1.00) |
0.102 (1.00) |
SEMG1 | 8 (3%) | 275 |
0.677 (1.00) |
0.175 (1.00) |
0.89 (1.00) |
1 (1.00) |
0.146 (1.00) |
1 (1.00) |
0.337 (1.00) |
|||
RPL5 | 7 (2%) | 276 |
0.379 (1.00) |
0.507 (1.00) |
0.869 (1.00) |
0.468 (1.00) |
1 (1.00) |
1 (1.00) |
0.843 (1.00) |
0.686 (1.00) |
0.463 (1.00) |
1 (1.00) |
SLC26A3 | 7 (2%) | 276 |
0.941 (1.00) |
0.769 (1.00) |
0.462 (1.00) |
0.367 (1.00) |
0.64 (1.00) |
0.168 (1.00) |
0.153 (1.00) |
0.157 (1.00) |
0.165 (1.00) |
|
MAP3K1 | 6 (2%) | 277 |
1 (1.00) |
0.729 (1.00) |
0.807 (1.00) |
0.644 (1.00) |
1 (1.00) |
0.569 (1.00) |
1 (1.00) |
|||
BRAF | 6 (2%) | 277 |
0.769 (1.00) |
0.713 (1.00) |
0.317 (1.00) |
0.0296 (1.00) |
0.591 (1.00) |
1 (1.00) |
0.642 (1.00) |
0.794 (1.00) |
1 (1.00) |
|
PDGFRA | 11 (4%) | 272 |
0.0131 (1.00) |
0.144 (1.00) |
0.906 (1.00) |
0.138 (1.00) |
0.464 (1.00) |
1 (1.00) |
1 (1.00) |
0.0264 (1.00) |
0.00465 (1.00) |
|
KDR | 8 (3%) | 275 |
0.205 (1.00) |
0.655 (1.00) |
0.277 (1.00) |
0.512 (1.00) |
0.496 (1.00) |
1 (1.00) |
0.145 (1.00) |
0.528 (1.00) |
||
TMPRSS6 | 6 (2%) | 277 |
0.668 (1.00) |
0.699 (1.00) |
0.662 (1.00) |
0.264 (1.00) |
0.775 (1.00) |
0.78 (1.00) |
0.253 (1.00) |
0.323 (1.00) |
0.574 (1.00) |
1 (1.00) |
CHD8 | 9 (3%) | 274 |
0.703 (1.00) |
0.532 (1.00) |
0.135 (1.00) |
0.647 (1.00) |
0.193 (1.00) |
1 (1.00) |
0.624 (1.00) |
0.759 (1.00) |
0.277 (1.00) |
0.611 (1.00) |
SEMA3C | 11 (4%) | 272 |
0.482 (1.00) |
0.173 (1.00) |
0.121 (1.00) |
0.85 (1.00) |
0.506 (1.00) |
0.338 (1.00) |
0.686 (1.00) |
0.103 (1.00) |
0.169 (1.00) |
|
ZDHHC4 | 3 (1%) | 280 |
0.164 (1.00) |
1 (1.00) |
0.0541 (1.00) |
0.356 (1.00) |
||||||
MMP13 | 5 (2%) | 278 |
0.912 (1.00) |
0.218 (1.00) |
0.766 (1.00) |
0.0483 (1.00) |
0.155 (1.00) |
|||||
PRKCD | 3 (1%) | 280 |
0.174 (1.00) |
0.084 (1.00) |
0.164 (1.00) |
1 (1.00) |
0.389 (1.00) |
|||||
REN | 5 (2%) | 278 |
0.477 (1.00) |
0.415 (1.00) |
0.0746 (1.00) |
0.51 (1.00) |
0.624 (1.00) |
0.184 (1.00) |
1 (1.00) |
0.837 (1.00) |
||
LRRC55 | 6 (2%) | 277 |
0.378 (1.00) |
0.536 (1.00) |
0.333 (1.00) |
0.868 (1.00) |
0.326 (1.00) |
|||||
MUC17 | 22 (8%) | 261 |
0.0127 (1.00) |
0.192 (1.00) |
0.705 (1.00) |
0.701 (1.00) |
0.961 (1.00) |
0.448 (1.00) |
0.245 (1.00) |
0.328 (1.00) |
0.86 (1.00) |
1 (1.00) |
CD209 | 5 (2%) | 278 |
0.911 (1.00) |
1 (1.00) |
0.0666 (1.00) |
0.608 (1.00) |
0.691 (1.00) |
0.485 (1.00) |
0.49 (1.00) |
1 (1.00) |
||
DDX5 | 4 (1%) | 279 |
0.216 (1.00) |
1 (1.00) |
0.542 (1.00) |
0.445 (1.00) |
0.145 (1.00) |
|||||
TP63 | 6 (2%) | 277 |
1 (1.00) |
0.732 (1.00) |
0.405 (1.00) |
0.647 (1.00) |
0.773 (1.00) |
0.558 (1.00) |
0.067 (1.00) |
0.208 (1.00) |
0.253 (1.00) |
0.11 (1.00) |
CD1D | 4 (1%) | 279 |
0.879 (1.00) |
1 (1.00) |
0.644 (1.00) |
0.123 (1.00) |
0.828 (1.00) |
1 (1.00) |
0.893 (1.00) |
1 (1.00) |
||
LZTR1 | 10 (4%) | 273 |
1 (1.00) |
0.513 (1.00) |
0.359 (1.00) |
0.705 (1.00) |
0.438 (1.00) |
0.37 (1.00) |
0.839 (1.00) |
0.894 (1.00) |
0.17 (1.00) |
0.751 (1.00) |
TEX15 | 8 (3%) | 275 |
0.31 (1.00) |
0.243 (1.00) |
0.299 (1.00) |
0.72 (1.00) |
0.551 (1.00) |
0.357 (1.00) |
0.869 (1.00) |
0.272 (1.00) |
0.00322 (0.837) |
0.823 (1.00) |
FBN3 | 11 (4%) | 272 |
0.191 (1.00) |
0.309 (1.00) |
0.904 (1.00) |
0.921 (1.00) |
0.182 (1.00) |
0.458 (1.00) |
0.281 (1.00) |
0.376 (1.00) |
0.856 (1.00) |
1 (1.00) |
P value = 0.00073 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 43 | 74 | 54 |
TP53 MUTATED | 16 | 19 | 11 | 22 |
TP53 WILD-TYPE | 53 | 24 | 63 | 32 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
TP53 MUTATED | 15 | 30 | 7 | 16 |
TP53 WILD-TYPE | 48 | 20 | 41 | 63 |
P value = 0.0013 (Fisher's exact test), Q value = 0.35
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 77 | 93 | 45 | 60 |
TP53 MUTATED | 12 | 39 | 10 | 18 |
TP53 WILD-TYPE | 65 | 54 | 35 | 42 |
P value = 0.15 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
TP53 MUTATED | 47 | 15 | 17 |
TP53 WILD-TYPE | 91 | 46 | 59 |
P value = 4e-05 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 107 | 81 |
TP53 MUTATED | 36 | 13 | 29 |
TP53 WILD-TYPE | 49 | 94 | 52 |
P value = 8e-05 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 35 | 44 | 29 |
TP53 MUTATED | 5 | 5 | 16 |
TP53 WILD-TYPE | 30 | 39 | 13 |
P value = 0.0382 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 41 | 38 | 31 | 33 |
TP53 MUTATED | 12 | 17 | 4 | 10 |
TP53 WILD-TYPE | 29 | 21 | 27 | 23 |
P value = 0.00902 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 52 | 43 |
TP53 MUTATED | 15 | 22 | 6 |
TP53 WILD-TYPE | 33 | 30 | 37 |
P value = 0.00181 (Fisher's exact test), Q value = 0.48
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 62 | 35 |
TP53 MUTATED | 23 | 13 | 8 |
TP53 WILD-TYPE | 21 | 49 | 27 |
P value = 0.00181 (Fisher's exact test), Q value = 0.48
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
TP53 MUTATED | 18 | 21 | 5 |
TP53 WILD-TYPE | 13 | 65 | 19 |
P value = 0.752 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 43 | 74 | 54 |
PIK3R1 MUTATED | 7 | 2 | 8 | 5 |
PIK3R1 WILD-TYPE | 62 | 41 | 66 | 49 |
P value = 0.191 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
PIK3R1 MUTATED | 7 | 6 | 6 | 3 |
PIK3R1 WILD-TYPE | 56 | 44 | 42 | 76 |
P value = 0.196 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 77 | 93 | 45 | 60 |
PIK3R1 MUTATED | 12 | 13 | 4 | 3 |
PIK3R1 WILD-TYPE | 65 | 80 | 41 | 57 |
P value = 0.529 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
PIK3R1 MUTATED | 16 | 5 | 11 |
PIK3R1 WILD-TYPE | 122 | 56 | 65 |
P value = 0.133 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 107 | 81 |
PIK3R1 MUTATED | 5 | 14 | 12 |
PIK3R1 WILD-TYPE | 80 | 93 | 69 |
P value = 0.582 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 35 | 44 | 29 |
PIK3R1 MUTATED | 7 | 8 | 3 |
PIK3R1 WILD-TYPE | 28 | 36 | 26 |
P value = 0.988 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 41 | 38 | 31 | 33 |
PIK3R1 MUTATED | 7 | 6 | 4 | 5 |
PIK3R1 WILD-TYPE | 34 | 32 | 27 | 28 |
P value = 0.678 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 52 | 43 |
PIK3R1 MUTATED | 9 | 8 | 5 |
PIK3R1 WILD-TYPE | 39 | 44 | 38 |
P value = 0.403 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 62 | 35 |
PIK3R1 MUTATED | 5 | 6 | 1 |
PIK3R1 WILD-TYPE | 39 | 56 | 34 |
P value = 0.222 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
PIK3R1 MUTATED | 4 | 8 | 0 |
PIK3R1 WILD-TYPE | 27 | 78 | 24 |
P value = 0.0343 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 43 | 74 | 54 |
RB1 MUTATED | 11 | 2 | 3 | 2 |
RB1 WILD-TYPE | 58 | 41 | 71 | 52 |
P value = 0.0172 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
RB1 MUTATED | 5 | 2 | 0 | 11 |
RB1 WILD-TYPE | 58 | 48 | 48 | 68 |
P value = 0.134 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 77 | 93 | 45 | 60 |
RB1 MUTATED | 11 | 4 | 3 | 6 |
RB1 WILD-TYPE | 66 | 89 | 42 | 54 |
P value = 0.923 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
RB1 MUTATED | 12 | 6 | 6 |
RB1 WILD-TYPE | 126 | 55 | 70 |
P value = 0.0478 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 107 | 81 |
RB1 MUTATED | 10 | 4 | 10 |
RB1 WILD-TYPE | 75 | 103 | 71 |
P value = 0.258 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 35 | 44 | 29 |
RB1 MUTATED | 5 | 2 | 1 |
RB1 WILD-TYPE | 30 | 42 | 28 |
P value = 0.492 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 41 | 38 | 31 | 33 |
RB1 MUTATED | 3 | 1 | 2 | 4 |
RB1 WILD-TYPE | 38 | 37 | 29 | 29 |
P value = 0.227 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 52 | 43 |
RB1 MUTATED | 6 | 2 | 2 |
RB1 WILD-TYPE | 42 | 50 | 41 |
P value = 0.0822 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 62 | 35 |
RB1 MUTATED | 1 | 8 | 1 |
RB1 WILD-TYPE | 43 | 54 | 34 |
P value = 0.577 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
RB1 MUTATED | 1 | 8 | 1 |
RB1 WILD-TYPE | 30 | 78 | 23 |
P value = 0.0811 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 43 | 74 | 54 |
NF1 MUTATED | 11 | 4 | 4 | 2 |
NF1 WILD-TYPE | 58 | 39 | 70 | 52 |
P value = 0.00025 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
NF1 MUTATED | 14 | 1 | 1 | 5 |
NF1 WILD-TYPE | 49 | 49 | 47 | 74 |
P value = 0.0251 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 77 | 93 | 45 | 60 |
NF1 MUTATED | 12 | 3 | 5 | 8 |
NF1 WILD-TYPE | 65 | 90 | 40 | 52 |
P value = 0.932 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
NF1 MUTATED | 14 | 7 | 7 |
NF1 WILD-TYPE | 124 | 54 | 69 |
P value = 0.00969 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 107 | 81 |
NF1 MUTATED | 5 | 8 | 16 |
NF1 WILD-TYPE | 80 | 99 | 65 |
P value = 0.00227 (Fisher's exact test), Q value = 0.6
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 35 | 44 | 29 |
NF1 MUTATED | 10 | 2 | 1 |
NF1 WILD-TYPE | 25 | 42 | 28 |
P value = 0.228 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 41 | 38 | 31 | 33 |
NF1 MUTATED | 7 | 3 | 1 | 5 |
NF1 WILD-TYPE | 34 | 35 | 30 | 28 |
P value = 0.00592 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 52 | 43 |
NF1 MUTATED | 11 | 4 | 1 |
NF1 WILD-TYPE | 37 | 48 | 42 |
P value = 0.565 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 62 | 35 |
NF1 MUTATED | 2 | 5 | 4 |
NF1 WILD-TYPE | 42 | 57 | 31 |
P value = 0.451 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
NF1 MUTATED | 1 | 7 | 3 |
NF1 WILD-TYPE | 30 | 79 | 21 |
P value = 0.116 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 43 | 74 | 54 |
PTEN MUTATED | 25 | 10 | 18 | 22 |
PTEN WILD-TYPE | 44 | 33 | 56 | 32 |
P value = 0.0742 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
PTEN MUTATED | 18 | 16 | 9 | 32 |
PTEN WILD-TYPE | 45 | 34 | 39 | 47 |
P value = 0.0266 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 77 | 93 | 45 | 60 |
PTEN MUTATED | 30 | 19 | 18 | 20 |
PTEN WILD-TYPE | 47 | 74 | 27 | 40 |
P value = 0.646 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
PTEN MUTATED | 45 | 21 | 21 |
PTEN WILD-TYPE | 93 | 40 | 55 |
P value = 0.387 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 107 | 81 |
PTEN MUTATED | 31 | 29 | 25 |
PTEN WILD-TYPE | 54 | 78 | 56 |
P value = 0.836 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 35 | 44 | 29 |
PTEN MUTATED | 10 | 15 | 8 |
PTEN WILD-TYPE | 25 | 29 | 21 |
P value = 0.377 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 41 | 38 | 31 | 33 |
PTEN MUTATED | 12 | 14 | 6 | 12 |
PTEN WILD-TYPE | 29 | 24 | 25 | 21 |
P value = 0.144 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 52 | 43 |
PTEN MUTATED | 20 | 13 | 11 |
PTEN WILD-TYPE | 28 | 39 | 32 |
P value = 0.27 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 62 | 35 |
PTEN MUTATED | 10 | 23 | 12 |
PTEN WILD-TYPE | 34 | 39 | 23 |
P value = 0.647 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
PTEN MUTATED | 8 | 28 | 9 |
PTEN WILD-TYPE | 23 | 58 | 15 |
P value = 0.00011 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 43 | 74 | 54 |
IDH1 MUTATED | 1 | 3 | 0 | 9 |
IDH1 WILD-TYPE | 68 | 40 | 74 | 45 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
IDH1 MUTATED | 0 | 13 | 0 | 0 |
IDH1 WILD-TYPE | 63 | 37 | 48 | 79 |
P value = 3e-05 (Fisher's exact test), Q value = 0.0084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 77 | 93 | 45 | 60 |
IDH1 MUTATED | 0 | 13 | 1 | 0 |
IDH1 WILD-TYPE | 77 | 80 | 44 | 60 |
P value = 0.0032 (Fisher's exact test), Q value = 0.84
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
IDH1 MUTATED | 13 | 0 | 1 |
IDH1 WILD-TYPE | 125 | 61 | 75 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 107 | 81 |
IDH1 MUTATED | 1 | 0 | 12 |
IDH1 WILD-TYPE | 84 | 107 | 69 |
P value = 0.00107 (Fisher's exact test), Q value = 0.29
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 35 | 44 | 29 |
IDH1 MUTATED | 0 | 0 | 5 |
IDH1 WILD-TYPE | 35 | 44 | 24 |
P value = 0.00348 (Fisher's exact test), Q value = 0.9
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 41 | 38 | 31 | 33 |
IDH1 MUTATED | 1 | 6 | 0 | 0 |
IDH1 WILD-TYPE | 40 | 32 | 31 | 33 |
P value = 0.00109 (Fisher's exact test), Q value = 0.29
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 52 | 43 |
IDH1 MUTATED | 0 | 7 | 0 |
IDH1 WILD-TYPE | 48 | 45 | 43 |
P value = 7e-04 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 62 | 35 |
IDH1 MUTATED | 7 | 0 | 1 |
IDH1 WILD-TYPE | 37 | 62 | 34 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
IDH1 MUTATED | 8 | 0 | 0 |
IDH1 WILD-TYPE | 23 | 86 | 24 |
P value = 0.79 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 43 | 74 | 54 |
PIK3CA MUTATED | 6 | 6 | 9 | 5 |
PIK3CA WILD-TYPE | 63 | 37 | 65 | 49 |
P value = 0.163 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
PIK3CA MUTATED | 8 | 6 | 8 | 4 |
PIK3CA WILD-TYPE | 55 | 44 | 40 | 75 |
P value = 0.569 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 77 | 93 | 45 | 60 |
PIK3CA MUTATED | 9 | 11 | 2 | 6 |
PIK3CA WILD-TYPE | 68 | 82 | 43 | 54 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
PIK3CA MUTATED | 14 | 6 | 8 |
PIK3CA WILD-TYPE | 124 | 55 | 68 |
P value = 0.904 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 107 | 81 |
PIK3CA MUTATED | 8 | 10 | 9 |
PIK3CA WILD-TYPE | 77 | 97 | 72 |
P value = 0.17 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 35 | 44 | 29 |
PIK3CA MUTATED | 2 | 5 | 6 |
PIK3CA WILD-TYPE | 33 | 39 | 23 |
P value = 0.756 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 41 | 38 | 31 | 33 |
PIK3CA MUTATED | 3 | 5 | 2 | 4 |
PIK3CA WILD-TYPE | 38 | 33 | 29 | 29 |
P value = 0.314 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 52 | 43 |
PIK3CA MUTATED | 7 | 5 | 2 |
PIK3CA WILD-TYPE | 41 | 47 | 41 |
P value = 0.266 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 62 | 35 |
PIK3CA MUTATED | 6 | 3 | 2 |
PIK3CA WILD-TYPE | 38 | 59 | 33 |
P value = 0.237 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
PIK3CA MUTATED | 4 | 7 | 0 |
PIK3CA WILD-TYPE | 27 | 79 | 24 |
P value = 0.395 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 43 | 74 | 54 |
STAG2 MUTATED | 4 | 3 | 1 | 2 |
STAG2 WILD-TYPE | 65 | 40 | 73 | 52 |
P value = 0.698 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
STAG2 MUTATED | 2 | 1 | 3 | 4 |
STAG2 WILD-TYPE | 61 | 49 | 45 | 75 |
P value = 0.715 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 77 | 93 | 45 | 60 |
STAG2 MUTATED | 4 | 5 | 2 | 1 |
STAG2 WILD-TYPE | 73 | 88 | 43 | 59 |
P value = 0.592 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
STAG2 MUTATED | 5 | 2 | 5 |
STAG2 WILD-TYPE | 133 | 59 | 71 |
P value = 0.757 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 107 | 81 |
STAG2 MUTATED | 5 | 4 | 3 |
STAG2 WILD-TYPE | 80 | 103 | 78 |
P value = 0.853 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 35 | 44 | 29 |
STAG2 MUTATED | 1 | 3 | 1 |
STAG2 WILD-TYPE | 34 | 41 | 28 |
P value = 0.00709 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 41 | 38 | 31 | 33 |
STAG2 MUTATED | 0 | 2 | 0 | 5 |
STAG2 WILD-TYPE | 41 | 36 | 31 | 28 |
P value = 0.392 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 52 | 43 |
STAG2 MUTATED | 4 | 2 | 1 |
STAG2 WILD-TYPE | 44 | 50 | 42 |
P value = 0.478 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 62 | 35 |
STAG2 MUTATED | 1 | 3 | 3 |
STAG2 WILD-TYPE | 43 | 59 | 32 |
P value = 0.102 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
STAG2 MUTATED | 0 | 4 | 3 |
STAG2 WILD-TYPE | 31 | 82 | 21 |
P value = 0.677 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 43 | 74 | 54 |
SEMG1 MUTATED | 1 | 1 | 4 | 2 |
SEMG1 WILD-TYPE | 68 | 42 | 70 | 52 |
P value = 0.175 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
SEMG1 MUTATED | 0 | 2 | 1 | 5 |
SEMG1 WILD-TYPE | 63 | 48 | 47 | 74 |
P value = 0.89 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 77 | 93 | 45 | 60 |
SEMG1 MUTATED | 2 | 4 | 1 | 1 |
SEMG1 WILD-TYPE | 75 | 89 | 44 | 59 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
SEMG1 MUTATED | 4 | 2 | 2 |
SEMG1 WILD-TYPE | 134 | 59 | 74 |
P value = 0.146 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 107 | 81 |
SEMG1 MUTATED | 3 | 5 | 0 |
SEMG1 WILD-TYPE | 82 | 102 | 81 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 62 | 35 |
SEMG1 MUTATED | 1 | 1 | 1 |
SEMG1 WILD-TYPE | 43 | 61 | 34 |
P value = 0.337 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
SEMG1 MUTATED | 1 | 1 | 1 |
SEMG1 WILD-TYPE | 30 | 85 | 23 |
P value = 0.379 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 43 | 74 | 54 |
RPL5 MUTATED | 1 | 2 | 3 | 0 |
RPL5 WILD-TYPE | 68 | 41 | 71 | 54 |
P value = 0.507 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
RPL5 MUTATED | 3 | 0 | 1 | 2 |
RPL5 WILD-TYPE | 60 | 50 | 47 | 77 |
P value = 0.869 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 77 | 93 | 45 | 60 |
RPL5 MUTATED | 1 | 3 | 1 | 2 |
RPL5 WILD-TYPE | 76 | 90 | 44 | 58 |
P value = 0.468 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
RPL5 MUTATED | 3 | 3 | 1 |
RPL5 WILD-TYPE | 135 | 58 | 75 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 107 | 81 |
RPL5 MUTATED | 2 | 3 | 2 |
RPL5 WILD-TYPE | 83 | 104 | 79 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 35 | 44 | 29 |
RPL5 MUTATED | 1 | 1 | 1 |
RPL5 WILD-TYPE | 34 | 43 | 28 |
P value = 0.843 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 41 | 38 | 31 | 33 |
RPL5 MUTATED | 2 | 1 | 1 | 0 |
RPL5 WILD-TYPE | 39 | 37 | 30 | 33 |
P value = 0.686 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 52 | 43 |
RPL5 MUTATED | 1 | 1 | 2 |
RPL5 WILD-TYPE | 47 | 51 | 41 |
P value = 0.463 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 62 | 35 |
RPL5 MUTATED | 2 | 1 | 0 |
RPL5 WILD-TYPE | 42 | 61 | 35 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
RPL5 MUTATED | 1 | 2 | 0 |
RPL5 WILD-TYPE | 30 | 84 | 24 |
P value = 0.941 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 43 | 74 | 54 |
SLC26A3 MUTATED | 1 | 1 | 2 | 2 |
SLC26A3 WILD-TYPE | 68 | 42 | 72 | 52 |
P value = 0.769 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
SLC26A3 MUTATED | 2 | 1 | 2 | 1 |
SLC26A3 WILD-TYPE | 61 | 49 | 46 | 78 |
P value = 0.462 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 77 | 93 | 45 | 60 |
SLC26A3 MUTATED | 1 | 4 | 0 | 2 |
SLC26A3 WILD-TYPE | 76 | 89 | 45 | 58 |
P value = 0.367 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
SLC26A3 MUTATED | 4 | 0 | 3 |
SLC26A3 WILD-TYPE | 134 | 61 | 73 |
P value = 0.64 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 107 | 81 |
SLC26A3 MUTATED | 2 | 4 | 1 |
SLC26A3 WILD-TYPE | 83 | 103 | 80 |
P value = 0.168 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 41 | 38 | 31 | 33 |
SLC26A3 MUTATED | 3 | 0 | 1 | 0 |
SLC26A3 WILD-TYPE | 38 | 38 | 30 | 33 |
P value = 0.153 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 52 | 43 |
SLC26A3 MUTATED | 3 | 0 | 1 |
SLC26A3 WILD-TYPE | 45 | 52 | 42 |
P value = 0.157 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 62 | 35 |
SLC26A3 MUTATED | 2 | 0 | 2 |
SLC26A3 WILD-TYPE | 42 | 62 | 33 |
P value = 0.165 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
SLC26A3 MUTATED | 2 | 1 | 1 |
SLC26A3 WILD-TYPE | 29 | 85 | 23 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 43 | 74 | 54 |
MAP3K1 MUTATED | 1 | 1 | 2 | 1 |
MAP3K1 WILD-TYPE | 68 | 42 | 72 | 53 |
P value = 0.729 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
MAP3K1 MUTATED | 1 | 1 | 2 | 1 |
MAP3K1 WILD-TYPE | 62 | 49 | 46 | 78 |
P value = 0.807 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 77 | 93 | 45 | 60 |
MAP3K1 MUTATED | 2 | 2 | 0 | 2 |
MAP3K1 WILD-TYPE | 75 | 91 | 45 | 58 |
P value = 0.644 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
MAP3K1 MUTATED | 2 | 2 | 2 |
MAP3K1 WILD-TYPE | 136 | 59 | 74 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 107 | 81 |
MAP3K1 MUTATED | 2 | 2 | 2 |
MAP3K1 WILD-TYPE | 83 | 105 | 79 |
P value = 0.569 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 62 | 35 |
MAP3K1 MUTATED | 1 | 3 | 0 |
MAP3K1 WILD-TYPE | 43 | 59 | 35 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
MAP3K1 MUTATED | 1 | 3 | 0 |
MAP3K1 WILD-TYPE | 30 | 83 | 24 |
P value = 0.00235 (Fisher's exact test), Q value = 0.62
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 43 | 74 | 54 |
ATRX MUTATED | 2 | 4 | 0 | 7 |
ATRX WILD-TYPE | 67 | 39 | 74 | 47 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
ATRX MUTATED | 0 | 11 | 0 | 2 |
ATRX WILD-TYPE | 63 | 39 | 48 | 77 |
P value = 0.00669 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 77 | 93 | 45 | 60 |
ATRX MUTATED | 2 | 11 | 3 | 0 |
ATRX WILD-TYPE | 75 | 82 | 42 | 60 |
P value = 0.0182 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
ATRX MUTATED | 13 | 0 | 3 |
ATRX WILD-TYPE | 125 | 61 | 73 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 107 | 81 |
ATRX MUTATED | 1 | 1 | 13 |
ATRX WILD-TYPE | 84 | 106 | 68 |
P value = 0.147 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 35 | 44 | 29 |
ATRX MUTATED | 2 | 1 | 4 |
ATRX WILD-TYPE | 33 | 43 | 25 |
P value = 0.00577 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 41 | 38 | 31 | 33 |
ATRX MUTATED | 0 | 6 | 0 | 2 |
ATRX WILD-TYPE | 41 | 32 | 31 | 31 |
P value = 0.0503 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 52 | 43 |
ATRX MUTATED | 2 | 6 | 0 |
ATRX WILD-TYPE | 46 | 46 | 43 |
P value = 0.00193 (Fisher's exact test), Q value = 0.51
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 62 | 35 |
ATRX MUTATED | 7 | 1 | 0 |
ATRX WILD-TYPE | 37 | 61 | 35 |
P value = 0.00023 (Fisher's exact test), Q value = 0.063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
ATRX MUTATED | 7 | 1 | 0 |
ATRX WILD-TYPE | 24 | 85 | 24 |
P value = 0.769 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 43 | 74 | 54 |
BRAF MUTATED | 1 | 1 | 2 | 0 |
BRAF WILD-TYPE | 68 | 42 | 72 | 54 |
P value = 0.713 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
BRAF MUTATED | 2 | 0 | 1 | 1 |
BRAF WILD-TYPE | 61 | 50 | 47 | 78 |
P value = 0.317 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 77 | 93 | 45 | 60 |
BRAF MUTATED | 2 | 1 | 0 | 3 |
BRAF WILD-TYPE | 75 | 92 | 45 | 57 |
P value = 0.0296 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
BRAF MUTATED | 2 | 4 | 0 |
BRAF WILD-TYPE | 136 | 57 | 76 |
P value = 0.591 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 107 | 81 |
BRAF MUTATED | 1 | 2 | 3 |
BRAF WILD-TYPE | 84 | 105 | 78 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 41 | 38 | 31 | 33 |
BRAF MUTATED | 1 | 1 | 0 | 1 |
BRAF WILD-TYPE | 40 | 37 | 31 | 32 |
P value = 0.642 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 52 | 43 |
BRAF MUTATED | 2 | 1 | 0 |
BRAF WILD-TYPE | 46 | 51 | 43 |
P value = 0.794 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 62 | 35 |
BRAF MUTATED | 1 | 2 | 0 |
BRAF WILD-TYPE | 43 | 60 | 35 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
BRAF MUTATED | 1 | 2 | 0 |
BRAF WILD-TYPE | 30 | 84 | 24 |
P value = 0.00722 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 43 | 74 | 54 |
EGFR MUTATED | 20 | 7 | 31 | 10 |
EGFR WILD-TYPE | 49 | 36 | 43 | 44 |
P value = 0.0574 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
EGFR MUTATED | 18 | 7 | 17 | 26 |
EGFR WILD-TYPE | 45 | 43 | 31 | 53 |
P value = 0.511 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 77 | 93 | 45 | 60 |
EGFR MUTATED | 22 | 27 | 8 | 17 |
EGFR WILD-TYPE | 55 | 66 | 37 | 43 |
P value = 0.139 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
EGFR MUTATED | 30 | 19 | 25 |
EGFR WILD-TYPE | 108 | 42 | 51 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 107 | 81 |
EGFR MUTATED | 17 | 46 | 9 |
EGFR WILD-TYPE | 68 | 61 | 72 |
P value = 0.0083 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 35 | 44 | 29 |
EGFR MUTATED | 6 | 14 | 1 |
EGFR WILD-TYPE | 29 | 30 | 28 |
P value = 9e-05 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 41 | 38 | 31 | 33 |
EGFR MUTATED | 13 | 5 | 16 | 2 |
EGFR WILD-TYPE | 28 | 33 | 15 | 31 |
P value = 0.00011 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 52 | 43 |
EGFR MUTATED | 8 | 7 | 21 |
EGFR WILD-TYPE | 40 | 45 | 22 |
P value = 0.0417 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 62 | 35 |
EGFR MUTATED | 8 | 22 | 15 |
EGFR WILD-TYPE | 36 | 40 | 20 |
P value = 0.00579 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
EGFR MUTATED | 3 | 32 | 10 |
EGFR WILD-TYPE | 28 | 54 | 14 |
P value = 0.0131 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 43 | 74 | 54 |
PDGFRA MUTATED | 1 | 6 | 2 | 1 |
PDGFRA WILD-TYPE | 68 | 37 | 72 | 53 |
P value = 0.144 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
PDGFRA MUTATED | 1 | 5 | 2 | 2 |
PDGFRA WILD-TYPE | 62 | 45 | 46 | 77 |
P value = 0.906 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 77 | 93 | 45 | 60 |
PDGFRA MUTATED | 4 | 3 | 2 | 2 |
PDGFRA WILD-TYPE | 73 | 90 | 43 | 58 |
P value = 0.138 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
PDGFRA MUTATED | 9 | 1 | 1 |
PDGFRA WILD-TYPE | 129 | 60 | 75 |
P value = 0.464 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 107 | 81 |
PDGFRA MUTATED | 3 | 3 | 5 |
PDGFRA WILD-TYPE | 82 | 104 | 76 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 41 | 38 | 31 | 33 |
PDGFRA MUTATED | 2 | 1 | 1 | 1 |
PDGFRA WILD-TYPE | 39 | 37 | 30 | 32 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 52 | 43 |
PDGFRA MUTATED | 2 | 2 | 1 |
PDGFRA WILD-TYPE | 46 | 50 | 42 |
P value = 0.0264 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 62 | 35 |
PDGFRA MUTATED | 5 | 1 | 0 |
PDGFRA WILD-TYPE | 39 | 61 | 35 |
P value = 0.00465 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
PDGFRA MUTATED | 5 | 1 | 0 |
PDGFRA WILD-TYPE | 26 | 85 | 24 |
P value = 0.205 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 43 | 74 | 54 |
KDR MUTATED | 1 | 2 | 1 | 4 |
KDR WILD-TYPE | 68 | 41 | 73 | 50 |
P value = 0.655 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
KDR MUTATED | 1 | 3 | 1 | 3 |
KDR WILD-TYPE | 62 | 47 | 47 | 76 |
P value = 0.277 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 77 | 93 | 45 | 60 |
KDR MUTATED | 2 | 1 | 3 | 2 |
KDR WILD-TYPE | 75 | 92 | 42 | 58 |
P value = 0.512 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
KDR MUTATED | 6 | 1 | 1 |
KDR WILD-TYPE | 132 | 60 | 75 |
P value = 0.496 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 107 | 81 |
KDR MUTATED | 2 | 2 | 4 |
KDR WILD-TYPE | 83 | 105 | 77 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 35 | 44 | 29 |
KDR MUTATED | 1 | 1 | 1 |
KDR WILD-TYPE | 34 | 43 | 28 |
P value = 0.145 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 41 | 38 | 31 | 33 |
KDR MUTATED | 3 | 0 | 0 | 2 |
KDR WILD-TYPE | 38 | 38 | 31 | 31 |
P value = 0.528 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 52 | 43 |
KDR MUTATED | 3 | 1 | 1 |
KDR WILD-TYPE | 45 | 51 | 42 |
P value = 0.668 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 43 | 74 | 54 |
TMPRSS6 MUTATED | 2 | 0 | 3 | 1 |
TMPRSS6 WILD-TYPE | 67 | 43 | 71 | 53 |
P value = 0.699 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
TMPRSS6 MUTATED | 3 | 1 | 1 | 1 |
TMPRSS6 WILD-TYPE | 60 | 49 | 47 | 78 |
P value = 0.662 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 77 | 93 | 45 | 60 |
TMPRSS6 MUTATED | 3 | 1 | 1 | 1 |
TMPRSS6 WILD-TYPE | 74 | 92 | 44 | 59 |
P value = 0.264 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
TMPRSS6 MUTATED | 2 | 3 | 1 |
TMPRSS6 WILD-TYPE | 136 | 58 | 75 |
P value = 0.775 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 107 | 81 |
TMPRSS6 MUTATED | 1 | 3 | 2 |
TMPRSS6 WILD-TYPE | 84 | 104 | 79 |
P value = 0.78 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 35 | 44 | 29 |
TMPRSS6 MUTATED | 1 | 2 | 0 |
TMPRSS6 WILD-TYPE | 34 | 42 | 29 |
P value = 0.253 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 41 | 38 | 31 | 33 |
TMPRSS6 MUTATED | 2 | 0 | 2 | 0 |
TMPRSS6 WILD-TYPE | 39 | 38 | 29 | 33 |
P value = 0.323 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 52 | 43 |
TMPRSS6 MUTATED | 2 | 0 | 2 |
TMPRSS6 WILD-TYPE | 46 | 52 | 41 |
P value = 0.574 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 62 | 35 |
TMPRSS6 MUTATED | 1 | 4 | 1 |
TMPRSS6 WILD-TYPE | 43 | 58 | 34 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
TMPRSS6 MUTATED | 1 | 4 | 1 |
TMPRSS6 WILD-TYPE | 30 | 82 | 23 |
P value = 0.703 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 43 | 74 | 54 |
CHD8 MUTATED | 3 | 2 | 1 | 2 |
CHD8 WILD-TYPE | 66 | 41 | 73 | 52 |
P value = 0.532 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
CHD8 MUTATED | 2 | 2 | 0 | 4 |
CHD8 WILD-TYPE | 61 | 48 | 48 | 75 |
P value = 0.135 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 77 | 93 | 45 | 60 |
CHD8 MUTATED | 0 | 3 | 3 | 2 |
CHD8 WILD-TYPE | 77 | 90 | 42 | 58 |
P value = 0.647 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
CHD8 MUTATED | 5 | 2 | 1 |
CHD8 WILD-TYPE | 133 | 59 | 75 |
P value = 0.193 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 107 | 81 |
CHD8 MUTATED | 1 | 3 | 5 |
CHD8 WILD-TYPE | 84 | 104 | 76 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 35 | 44 | 29 |
CHD8 MUTATED | 2 | 3 | 2 |
CHD8 WILD-TYPE | 33 | 41 | 27 |
P value = 0.624 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 41 | 38 | 31 | 33 |
CHD8 MUTATED | 2 | 4 | 2 | 1 |
CHD8 WILD-TYPE | 39 | 34 | 29 | 32 |
P value = 0.759 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 52 | 43 |
CHD8 MUTATED | 2 | 4 | 3 |
CHD8 WILD-TYPE | 46 | 48 | 40 |
P value = 0.277 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 62 | 35 |
CHD8 MUTATED | 2 | 1 | 3 |
CHD8 WILD-TYPE | 42 | 61 | 32 |
P value = 0.611 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
CHD8 MUTATED | 2 | 4 | 0 |
CHD8 WILD-TYPE | 29 | 82 | 24 |
P value = 0.482 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 43 | 74 | 54 |
SEMA3C MUTATED | 3 | 4 | 2 | 2 |
SEMA3C WILD-TYPE | 66 | 39 | 72 | 52 |
P value = 0.173 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
SEMA3C MUTATED | 1 | 5 | 1 | 4 |
SEMA3C WILD-TYPE | 62 | 45 | 47 | 75 |
P value = 0.121 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 77 | 93 | 45 | 60 |
SEMA3C MUTATED | 3 | 7 | 1 | 0 |
SEMA3C WILD-TYPE | 74 | 86 | 44 | 60 |
P value = 0.85 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
SEMA3C MUTATED | 5 | 2 | 4 |
SEMA3C WILD-TYPE | 133 | 59 | 72 |
P value = 0.506 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 107 | 81 |
SEMA3C MUTATED | 5 | 4 | 2 |
SEMA3C WILD-TYPE | 80 | 103 | 79 |
P value = 0.338 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 41 | 38 | 31 | 33 |
SEMA3C MUTATED | 2 | 2 | 0 | 0 |
SEMA3C WILD-TYPE | 39 | 36 | 31 | 33 |
P value = 0.686 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 52 | 43 |
SEMA3C MUTATED | 1 | 1 | 2 |
SEMA3C WILD-TYPE | 47 | 51 | 41 |
P value = 0.103 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 62 | 35 |
SEMA3C MUTATED | 6 | 2 | 1 |
SEMA3C WILD-TYPE | 38 | 60 | 34 |
P value = 0.169 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
SEMA3C MUTATED | 4 | 5 | 0 |
SEMA3C WILD-TYPE | 27 | 81 | 24 |
P value = 0.164 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 77 | 93 | 45 | 60 |
ZDHHC4 MUTATED | 0 | 3 | 0 | 0 |
ZDHHC4 WILD-TYPE | 77 | 90 | 45 | 60 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
ZDHHC4 MUTATED | 2 | 0 | 1 |
ZDHHC4 WILD-TYPE | 136 | 61 | 75 |
P value = 0.0541 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 107 | 81 |
ZDHHC4 MUTATED | 3 | 0 | 0 |
ZDHHC4 WILD-TYPE | 82 | 107 | 81 |
P value = 0.356 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 35 | 44 | 29 |
ZDHHC4 MUTATED | 0 | 1 | 2 |
ZDHHC4 WILD-TYPE | 35 | 43 | 27 |
P value = 0.912 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 43 | 74 | 54 |
MMP13 MUTATED | 1 | 0 | 2 | 1 |
MMP13 WILD-TYPE | 68 | 43 | 72 | 53 |
P value = 0.218 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
MMP13 MUTATED | 1 | 1 | 2 | 0 |
MMP13 WILD-TYPE | 62 | 49 | 46 | 79 |
P value = 0.766 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 77 | 93 | 45 | 60 |
MMP13 MUTATED | 1 | 2 | 0 | 2 |
MMP13 WILD-TYPE | 76 | 91 | 45 | 58 |
P value = 0.0483 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
MMP13 MUTATED | 1 | 0 | 4 |
MMP13 WILD-TYPE | 137 | 61 | 72 |
P value = 0.155 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 107 | 81 |
MMP13 MUTATED | 0 | 4 | 1 |
MMP13 WILD-TYPE | 85 | 103 | 80 |
P value = 0.174 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 43 | 74 | 54 |
PRKCD MUTATED | 0 | 2 | 1 | 0 |
PRKCD WILD-TYPE | 69 | 41 | 73 | 54 |
P value = 0.084 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
PRKCD MUTATED | 0 | 2 | 1 | 0 |
PRKCD WILD-TYPE | 63 | 48 | 47 | 79 |
P value = 0.164 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 77 | 93 | 45 | 60 |
PRKCD MUTATED | 0 | 3 | 0 | 0 |
PRKCD WILD-TYPE | 77 | 90 | 45 | 60 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
PRKCD MUTATED | 2 | 0 | 1 |
PRKCD WILD-TYPE | 136 | 61 | 75 |
P value = 0.389 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 107 | 81 |
PRKCD MUTATED | 0 | 1 | 2 |
PRKCD WILD-TYPE | 85 | 106 | 79 |
P value = 0.477 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 43 | 74 | 54 |
REN MUTATED | 0 | 0 | 2 | 1 |
REN WILD-TYPE | 69 | 43 | 72 | 53 |
P value = 0.415 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
REN MUTATED | 0 | 0 | 1 | 2 |
REN WILD-TYPE | 63 | 50 | 47 | 77 |
P value = 0.0746 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 77 | 93 | 45 | 60 |
REN MUTATED | 1 | 1 | 3 | 0 |
REN WILD-TYPE | 76 | 92 | 42 | 60 |
P value = 0.51 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
REN MUTATED | 4 | 0 | 1 |
REN WILD-TYPE | 134 | 61 | 75 |
P value = 0.624 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 107 | 81 |
REN MUTATED | 2 | 1 | 2 |
REN WILD-TYPE | 83 | 106 | 79 |
P value = 0.184 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 35 | 44 | 29 |
REN MUTATED | 1 | 0 | 2 |
REN WILD-TYPE | 34 | 44 | 27 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 41 | 38 | 31 | 33 |
REN MUTATED | 1 | 1 | 1 | 1 |
REN WILD-TYPE | 40 | 37 | 30 | 32 |
P value = 0.837 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 52 | 43 |
REN MUTATED | 2 | 1 | 1 |
REN WILD-TYPE | 46 | 51 | 42 |
P value = 0.378 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 43 | 74 | 54 |
LRRC55 MUTATED | 0 | 1 | 3 | 1 |
LRRC55 WILD-TYPE | 69 | 42 | 71 | 53 |
P value = 0.536 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
LRRC55 MUTATED | 0 | 1 | 1 | 3 |
LRRC55 WILD-TYPE | 63 | 49 | 47 | 76 |
P value = 0.333 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 77 | 93 | 45 | 60 |
LRRC55 MUTATED | 3 | 3 | 0 | 0 |
LRRC55 WILD-TYPE | 74 | 90 | 45 | 60 |
P value = 0.868 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
LRRC55 MUTATED | 4 | 1 | 1 |
LRRC55 WILD-TYPE | 134 | 60 | 75 |
P value = 0.326 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 107 | 81 |
LRRC55 MUTATED | 3 | 3 | 0 |
LRRC55 WILD-TYPE | 82 | 104 | 81 |
P value = 0.0127 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 43 | 74 | 54 |
MUC17 MUTATED | 10 | 5 | 1 | 3 |
MUC17 WILD-TYPE | 59 | 38 | 73 | 51 |
P value = 0.192 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
MUC17 MUTATED | 8 | 1 | 3 | 7 |
MUC17 WILD-TYPE | 55 | 49 | 45 | 72 |
P value = 0.705 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 77 | 93 | 45 | 60 |
MUC17 MUTATED | 5 | 7 | 3 | 7 |
MUC17 WILD-TYPE | 72 | 86 | 42 | 53 |
P value = 0.701 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
MUC17 MUTATED | 10 | 4 | 8 |
MUC17 WILD-TYPE | 128 | 57 | 68 |
P value = 0.961 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 107 | 81 |
MUC17 MUTATED | 7 | 8 | 7 |
MUC17 WILD-TYPE | 78 | 99 | 74 |
P value = 0.448 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 35 | 44 | 29 |
MUC17 MUTATED | 4 | 5 | 1 |
MUC17 WILD-TYPE | 31 | 39 | 28 |
P value = 0.245 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 41 | 38 | 31 | 33 |
MUC17 MUTATED | 5 | 1 | 1 | 4 |
MUC17 WILD-TYPE | 36 | 37 | 30 | 29 |
P value = 0.328 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 52 | 43 |
MUC17 MUTATED | 6 | 3 | 2 |
MUC17 WILD-TYPE | 42 | 49 | 41 |
P value = 0.86 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 62 | 35 |
MUC17 MUTATED | 4 | 6 | 2 |
MUC17 WILD-TYPE | 40 | 56 | 33 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
MUC17 MUTATED | 2 | 8 | 2 |
MUC17 WILD-TYPE | 29 | 78 | 22 |
P value = 0.911 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 43 | 74 | 54 |
CD209 MUTATED | 1 | 0 | 2 | 1 |
CD209 WILD-TYPE | 68 | 43 | 72 | 53 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
CD209 MUTATED | 1 | 1 | 1 | 1 |
CD209 WILD-TYPE | 62 | 49 | 47 | 78 |
P value = 0.0666 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 77 | 93 | 45 | 60 |
CD209 MUTATED | 2 | 0 | 0 | 3 |
CD209 WILD-TYPE | 75 | 93 | 45 | 57 |
P value = 0.608 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
CD209 MUTATED | 3 | 0 | 2 |
CD209 WILD-TYPE | 135 | 61 | 74 |
P value = 0.691 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 107 | 81 |
CD209 MUTATED | 1 | 1 | 2 |
CD209 WILD-TYPE | 84 | 106 | 79 |
P value = 0.485 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 35 | 44 | 29 |
CD209 MUTATED | 2 | 1 | 0 |
CD209 WILD-TYPE | 33 | 43 | 29 |
P value = 0.49 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 41 | 38 | 31 | 33 |
CD209 MUTATED | 1 | 0 | 1 | 2 |
CD209 WILD-TYPE | 40 | 38 | 30 | 31 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 52 | 43 |
CD209 MUTATED | 1 | 2 | 1 |
CD209 WILD-TYPE | 47 | 50 | 42 |
P value = 0.216 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 43 | 74 | 54 |
DDX5 MUTATED | 1 | 0 | 0 | 2 |
DDX5 WILD-TYPE | 68 | 43 | 74 | 52 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
DDX5 MUTATED | 1 | 1 | 0 | 1 |
DDX5 WILD-TYPE | 62 | 49 | 48 | 78 |
P value = 0.542 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 77 | 93 | 45 | 60 |
DDX5 MUTATED | 0 | 2 | 1 | 1 |
DDX5 WILD-TYPE | 77 | 91 | 44 | 59 |
P value = 0.445 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
DDX5 MUTATED | 1 | 1 | 2 |
DDX5 WILD-TYPE | 137 | 60 | 74 |
P value = 0.145 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 107 | 81 |
DDX5 MUTATED | 0 | 1 | 3 |
DDX5 WILD-TYPE | 85 | 106 | 78 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 43 | 74 | 54 |
TP63 MUTATED | 1 | 1 | 2 | 1 |
TP63 WILD-TYPE | 68 | 42 | 72 | 53 |
P value = 0.732 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
TP63 MUTATED | 1 | 1 | 2 | 1 |
TP63 WILD-TYPE | 62 | 49 | 46 | 78 |
P value = 0.405 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 77 | 93 | 45 | 60 |
TP63 MUTATED | 1 | 1 | 1 | 3 |
TP63 WILD-TYPE | 76 | 92 | 44 | 57 |
P value = 0.647 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
TP63 MUTATED | 2 | 2 | 2 |
TP63 WILD-TYPE | 136 | 59 | 74 |
P value = 0.773 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 107 | 81 |
TP63 MUTATED | 1 | 3 | 2 |
TP63 WILD-TYPE | 84 | 104 | 79 |
P value = 0.558 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 35 | 44 | 29 |
TP63 MUTATED | 2 | 2 | 0 |
TP63 WILD-TYPE | 33 | 42 | 29 |
P value = 0.067 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 41 | 38 | 31 | 33 |
TP63 MUTATED | 0 | 1 | 0 | 3 |
TP63 WILD-TYPE | 41 | 37 | 31 | 30 |
P value = 0.208 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 52 | 43 |
TP63 MUTATED | 3 | 1 | 0 |
TP63 WILD-TYPE | 45 | 51 | 43 |
P value = 0.253 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 62 | 35 |
TP63 MUTATED | 0 | 1 | 2 |
TP63 WILD-TYPE | 44 | 61 | 33 |
P value = 0.11 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
TP63 MUTATED | 0 | 1 | 2 |
TP63 WILD-TYPE | 31 | 85 | 22 |
P value = 0.879 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 43 | 74 | 54 |
CD1D MUTATED | 1 | 1 | 1 | 0 |
CD1D WILD-TYPE | 68 | 42 | 73 | 54 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
CD1D MUTATED | 1 | 1 | 0 | 1 |
CD1D WILD-TYPE | 62 | 49 | 48 | 78 |
P value = 0.644 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 77 | 93 | 45 | 60 |
CD1D MUTATED | 2 | 2 | 0 | 0 |
CD1D WILD-TYPE | 75 | 91 | 45 | 60 |
P value = 0.123 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
CD1D MUTATED | 1 | 0 | 3 |
CD1D WILD-TYPE | 137 | 61 | 73 |
P value = 0.828 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 107 | 81 |
CD1D MUTATED | 2 | 1 | 1 |
CD1D WILD-TYPE | 83 | 106 | 80 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 35 | 44 | 29 |
CD1D MUTATED | 1 | 1 | 1 |
CD1D WILD-TYPE | 34 | 43 | 28 |
P value = 0.893 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 41 | 38 | 31 | 33 |
CD1D MUTATED | 1 | 1 | 1 | 0 |
CD1D WILD-TYPE | 40 | 37 | 30 | 33 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 52 | 43 |
CD1D MUTATED | 1 | 1 | 1 |
CD1D WILD-TYPE | 47 | 51 | 42 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 43 | 74 | 54 |
LZTR1 MUTATED | 2 | 1 | 2 | 2 |
LZTR1 WILD-TYPE | 67 | 42 | 72 | 52 |
P value = 0.513 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
LZTR1 MUTATED | 3 | 2 | 0 | 2 |
LZTR1 WILD-TYPE | 60 | 48 | 48 | 77 |
P value = 0.359 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 77 | 93 | 45 | 60 |
LZTR1 MUTATED | 5 | 3 | 0 | 2 |
LZTR1 WILD-TYPE | 72 | 90 | 45 | 58 |
P value = 0.705 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
LZTR1 MUTATED | 4 | 3 | 3 |
LZTR1 WILD-TYPE | 134 | 58 | 73 |
P value = 0.438 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 107 | 81 |
LZTR1 MUTATED | 4 | 4 | 1 |
LZTR1 WILD-TYPE | 81 | 103 | 80 |
P value = 0.37 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 35 | 44 | 29 |
LZTR1 MUTATED | 3 | 2 | 0 |
LZTR1 WILD-TYPE | 32 | 42 | 29 |
P value = 0.839 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 41 | 38 | 31 | 33 |
LZTR1 MUTATED | 1 | 2 | 2 | 2 |
LZTR1 WILD-TYPE | 40 | 36 | 29 | 31 |
P value = 0.894 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 52 | 43 |
LZTR1 MUTATED | 3 | 2 | 2 |
LZTR1 WILD-TYPE | 45 | 50 | 41 |
P value = 0.17 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 62 | 35 |
LZTR1 MUTATED | 2 | 0 | 1 |
LZTR1 WILD-TYPE | 42 | 62 | 34 |
P value = 0.751 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
LZTR1 MUTATED | 0 | 3 | 0 |
LZTR1 WILD-TYPE | 31 | 83 | 24 |
P value = 0.31 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 43 | 74 | 54 |
TEX15 MUTATED | 2 | 1 | 1 | 4 |
TEX15 WILD-TYPE | 67 | 42 | 73 | 50 |
P value = 0.243 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
TEX15 MUTATED | 1 | 2 | 0 | 5 |
TEX15 WILD-TYPE | 62 | 48 | 48 | 74 |
P value = 0.299 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 77 | 93 | 45 | 60 |
TEX15 MUTATED | 1 | 5 | 0 | 2 |
TEX15 WILD-TYPE | 76 | 88 | 45 | 58 |
P value = 0.72 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
TEX15 MUTATED | 3 | 2 | 3 |
TEX15 WILD-TYPE | 135 | 59 | 73 |
P value = 0.551 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 107 | 81 |
TEX15 MUTATED | 4 | 2 | 2 |
TEX15 WILD-TYPE | 81 | 105 | 79 |
P value = 0.357 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 35 | 44 | 29 |
TEX15 MUTATED | 0 | 1 | 2 |
TEX15 WILD-TYPE | 35 | 43 | 27 |
P value = 0.869 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 41 | 38 | 31 | 33 |
TEX15 MUTATED | 1 | 1 | 1 | 2 |
TEX15 WILD-TYPE | 40 | 37 | 30 | 31 |
P value = 0.272 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 52 | 43 |
TEX15 MUTATED | 0 | 3 | 2 |
TEX15 WILD-TYPE | 48 | 49 | 41 |
P value = 0.00322 (Fisher's exact test), Q value = 0.84
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 62 | 35 |
TEX15 MUTATED | 5 | 0 | 0 |
TEX15 WILD-TYPE | 39 | 62 | 35 |
P value = 0.823 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
TEX15 MUTATED | 1 | 4 | 0 |
TEX15 WILD-TYPE | 30 | 82 | 24 |
P value = 0.191 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 69 | 43 | 74 | 54 |
FBN3 MUTATED | 1 | 1 | 6 | 1 |
FBN3 WILD-TYPE | 68 | 42 | 68 | 53 |
P value = 0.309 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 63 | 50 | 48 | 79 |
FBN3 MUTATED | 1 | 2 | 4 | 2 |
FBN3 WILD-TYPE | 62 | 48 | 44 | 77 |
P value = 0.904 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 77 | 93 | 45 | 60 |
FBN3 MUTATED | 4 | 3 | 2 | 2 |
FBN3 WILD-TYPE | 73 | 90 | 43 | 58 |
P value = 0.921 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 138 | 61 | 76 |
FBN3 MUTATED | 5 | 3 | 3 |
FBN3 WILD-TYPE | 133 | 58 | 73 |
P value = 0.182 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 107 | 81 |
FBN3 MUTATED | 3 | 7 | 1 |
FBN3 WILD-TYPE | 82 | 100 | 80 |
P value = 0.458 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 35 | 44 | 29 |
FBN3 MUTATED | 1 | 3 | 0 |
FBN3 WILD-TYPE | 34 | 41 | 29 |
P value = 0.281 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 41 | 38 | 31 | 33 |
FBN3 MUTATED | 0 | 3 | 1 | 2 |
FBN3 WILD-TYPE | 41 | 35 | 30 | 31 |
P value = 0.376 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 48 | 52 | 43 |
FBN3 MUTATED | 1 | 4 | 1 |
FBN3 WILD-TYPE | 47 | 48 | 42 |
P value = 0.856 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 62 | 35 |
FBN3 MUTATED | 1 | 3 | 1 |
FBN3 WILD-TYPE | 43 | 59 | 34 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 86 | 24 |
FBN3 MUTATED | 1 | 3 | 1 |
FBN3 WILD-TYPE | 30 | 83 | 23 |
-
Mutation data file = transformed.cor.cli.txt
-
Molecular subtypes file = GBM-TP.transferedmergedcluster.txt
-
Number of patients = 283
-
Number of significantly mutated genes = 33
-
Number of Molecular subtypes = 10
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.