Clinical Features MRNA_CNMF MRNA_CHIERARCHICAL MIR_CNMF MIR_CHIERARCHICAL CN_CNMF METHLYATION_CNMF RPPA_CNMF RPPA_CHIERARCHICAL MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL nCNV (%) nWild-Type Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q amp_1p36.21 92 (16%) 479 0.58683 1 0.42752 1 0.40538 1 0.11465 1 9.9999e-06 0.0071 0.82089 1 0.02641 1 0.095849 1 0.01194 1 0.01936 1 amp_1q32.1 159 (28%) 412 0.82062 1 0.062169 1 0.33406 1 0.14913 1 9.9999e-06 0.0071 0.83179 1 0.91592 1 0.66542 1 0.55514 1 0.089799 1 amp_1q44 99 (17%) 472 0.14604 1 0.61966 1 0.60712 1 0.30826 1 9.9999e-06 0.0071 0.42559 1 0.32002 1 0.082829 1 0.96166 1 0.55411 1 amp_2p24.3 49 (9%) 522 0.099419 1 0.01631 1 0.42896 1 0.97881 1 0.00118 0.683 0.10038 1 0.43257 1 0.36287 1 0.88433 1 0.62364 1 amp_3q26.33 111 (19%) 460 0.0082899 1 0.20938 1 0.4418 1 0.055479 1 9.9999e-06 0.0071 0.0098899 1 0.087439 1 0.66194 1 0.2783 1 0.69695 1 amp_4p16.3 48 (8%) 523 0.30849 1 0.72854 1 0.85927 1 0.084109 1 0.32155 1 0.52768 1 0.70475 1 0.47444 1 1 1 1 1 amp_4q12 107 (19%) 464 0.00070999 0.417 0.00306 1 0.53963 1 0.47041 1 9.9999e-06 0.0071 0.10962 1 0.46947 1 0.60368 1 0.15646 1 0.41715 1 amp_7p11.2 502 (88%) 69 9.9999e-06 0.0071 9.9999e-06 0.0071 9.9999e-06 0.0071 9.9999e-06 0.0071 9.9999e-06 0.0071 9.9999e-06 0.0071 2e-05 0.0128 7.9999e-05 0.0489 2e-05 0.0128 9.9999e-06 0.0071 amp_7q11.21 459 (80%) 112 3e-05 0.0188 9.9999e-06 0.0071 4e-05 0.0248 3e-05 0.0188 9.9999e-06 0.0071 0.00059999 0.354 0.00443 1 0.00216 1 0.00381 1 4e-05 0.0248 amp_7q21.2 475 (83%) 96 5e-05 0.0308 9.9999e-06 0.0071 0.04904 1 0.00015 0.0907 9.9999e-06 0.0071 0.00025 0.149 0.0182 1 0.04429 1 0.060739 1 0.00265 1 amp_7q31.2 468 (82%) 103 0.00184 1 9.9999e-06 0.0071 0.01062 1 0.0055699 1 3e-05 0.0188 0.00123 0.707 0.11002 1 0.02518 1 0.40559 1 0.0098199 1 amp_8q24.21 70 (12%) 501 9.9999e-06 0.0071 2e-05 0.0128 0.02531 1 0.28998 1 9.9999e-06 0.0071 0.02675 1 0.33406 1 0.28997 1 0.086609 1 0.26758 1 amp_11p13 31 (5%) 540 0.78628 1 0.34988 1 0.5511 1 0.24766 1 0.39476 1 0.24249 1 0.71245 1 0.34332 1 1 1 0.88712 1 amp_12p13.32 82 (14%) 489 0.66239 1 0.38528 1 0.34357 1 0.42974 1 9.9999e-06 0.0071 0.41324 1 0.3917 1 0.37247 1 0.31527 1 0.54764 1 amp_12q14.1 133 (23%) 438 0.067249 1 0.1484 1 0.098099 1 0.088069 1 9.9999e-06 0.0071 0.31076 1 0.093929 1 0.25041 1 0.04349 1 0.13792 1 amp_12q15 92 (16%) 479 0.73 1 0.31678 1 0.70836 1 0.27831 1 9.9999e-06 0.0071 0.84582 1 0.29341 1 0.30051 1 0.3145 1 0.90211 1 amp_13q34 32 (6%) 539 0.2616 1 0.20003 1 0.02859 1 0.48382 1 0.055899 1 0.62416 1 0.02001 1 0.23499 1 0.49112 1 0.80402 1 amp_13q34 30 (5%) 541 0.14088 1 0.20912 1 0.21518 1 0.78573 1 0.12737 1 0.62416 1 0.052899 1 0.29974 1 0.36928 1 0.79201 1 amp_14q32.33 36 (6%) 535 0.18667 1 0.65755 1 0.088739 1 0.91859 1 0.82331 1 0.49578 1 0.02438 1 0.34014 1 0.03852 1 0.067019 1 amp_17p13.2 51 (9%) 520 0.00053999 0.32 0.0137 1 0.04861 1 0.112 1 0.00070999 0.417 0.0469 1 0.1258 1 0.51424 1 0.40321 1 0.57091 1 amp_17q25.1 84 (15%) 487 0.01374 1 0.25478 1 0.27932 1 0.72757 1 9.9999e-05 0.061 0.8102 1 0.13691 1 0.18987 1 0.86519 1 0.69424 1 amp_19p13.3 242 (42%) 329 9.9999e-06 0.0071 9.9999e-06 0.0071 0.03748 1 0.00157 0.896 9.9999e-06 0.0071 0.00075999 0.445 0.0094399 1 5.9999e-05 0.0367 0.82144 1 0.97108 1 amp_19p13.2 247 (43%) 324 9.9999e-06 0.0071 9.9999e-06 0.0071 0.14887 1 0.00111 0.644 9.9999e-06 0.0071 0.00075999 0.445 0.01305 1 0.00011 0.067 0.16464 1 0.81241 1 amp_19q12 213 (37%) 358 9.9999e-06 0.0071 9.9999e-06 0.0071 0.28212 1 0.00486 1 9.9999e-06 0.0071 0.056769 1 0.0091899 1 0.00050999 0.302 0.063159 1 0.1722 1 amp_21q21.1 69 (12%) 502 0.0051499 1 0.059819 1 0.01783 1 0.0079899 1 4e-04 0.238 0.22808 1 0.66751 1 0.082089 1 0.097159 1 0.4062 1 del_1p36.32 100 (18%) 471 0.91799 1 0.71366 1 0.58401 1 0.17458 1 0.3506 1 0.28674 1 0.60329 1 0.30511 1 0.25343 1 0.58002 1 del_1p36.23 136 (24%) 435 0.070899 1 0.18551 1 0.55975 1 0.50273 1 3e-05 0.0188 0.26291 1 0.27793 1 0.29316 1 0.01699 1 0.093869 1 del_1p32.3 61 (11%) 510 0.24291 1 0.36757 1 0.83002 1 0.15658 1 0.38676 1 0.92615 1 0.70565 1 0.47774 1 0.80243 1 0.10394 1 del_1p22.1 48 (8%) 523 0.9763 1 0.55401 1 0.81382 1 0.00479 1 0.13517 1 0.84181 1 0.88785 1 0.72092 1 1 1 0.3205 1 del_1q42.11 51 (9%) 520 0.21883 1 0.82462 1 0.51357 1 0.28551 1 0.6761 1 0.066199 1 0.141 1 0.01653 1 0.68783 1 0.19309 1 del_1q44 35 (6%) 536 0.81342 1 0.4714 1 0.72736 1 0.24731 1 0.2587 1 0.071709 1 0.66308 1 0.43853 1 0.53965 1 0.32382 1 del_2q22.1 45 (8%) 526 0.0056599 1 0.02948 1 0.38973 1 0.54906 1 2e-05 0.0128 0.0348 1 0.4765 1 0.33768 1 0.18343 1 0.43256 1 del_2q37.1 54 (9%) 517 0.10246 1 0.0058399 1 0.31686 1 0.82232 1 0.04838 1 0.070379 1 0.78369 1 0.27279 1 0.18275 1 0.051439 1 del_3p21.1 52 (9%) 519 0.24141 1 0.13251 1 0.67716 1 0.48349 1 0.00079999 0.466 0.069229 1 0.1365 1 0.91515 1 0.46173 1 0.1075 1 del_3q13.31 58 (10%) 513 0.51269 1 0.38826 1 0.69284 1 0.66591 1 3e-05 0.0188 0.61738 1 0.97474 1 0.20577 1 1 1 0.178 1 del_3q22.1 58 (10%) 513 0.79054 1 0.62636 1 0.95601 1 1 1 0.00069999 0.412 0.23771 1 0.9621 1 0.31652 1 1 1 0.22035 1 del_3q29 65 (11%) 506 0.089029 1 0.18582 1 0.53731 1 0.87601 1 0.04566 1 0.80256 1 0.44926 1 0.060889 1 0.95405 1 0.79078 1 del_4p16.3 77 (13%) 494 0.04832 1 0.00493 1 0.32214 1 0.24883 1 0.0061299 1 1 1 0.83001 1 0.45356 1 0.87284 1 0.94619 1 del_4q34.3 91 (16%) 480 0.0054099 1 0.00023 0.138 0.074149 1 0.097849 1 9.9999e-06 0.0071 0.0119 1 0.096719 1 0.91914 1 0.12297 1 0.13463 1 del_5q35.3 53 (9%) 518 5e-05 0.0308 9.9999e-06 0.0071 0.00024 0.144 0.0134 1 9.9999e-06 0.0071 0.00336 1 0.84163 1 0.54456 1 0.21078 1 0.18671 1 del_6q22.31 157 (27%) 414 0.63225 1 0.99062 1 0.29441 1 0.28657 1 9.9999e-06 0.0071 0.083569 1 0.34564 1 0.19034 1 0.79758 1 0.10948 1 del_6q26 178 (31%) 393 0.74443 1 0.75495 1 0.47742 1 0.54652 1 0.00028 0.167 0.22715 1 0.03474 1 0.3447 1 0.76363 1 0.0185 1 del_8p23.2 65 (11%) 506 0.37518 1 0.24721 1 0.17728 1 0.27545 1 0.12036 1 1 1 0.94428 1 0.90278 1 0.72212 1 0.43708 1 del_9p21.3 416 (73%) 155 2e-05 0.0128 9.9999e-06 0.0071 0.69774 1 0.03592 1 9.9999e-06 0.0071 0.055319 1 0.13753 1 0.01587 1 0.02812 1 0.0082299 1 del_9q34.2 78 (14%) 493 0.21381 1 0.10585 1 0.51838 1 0.23007 1 0.34365 1 0.28082 1 0.22882 1 0.22364 1 0.44392 1 0.30519 1 del_10p15.3 465 (81%) 106 9.9999e-06 0.0071 9.9999e-06 0.0071 0.0085299 1 0.00384 1 9.9999e-06 0.0071 0.065869 1 0.0054899 1 0.00216 1 0.01394 1 0.00015 0.0907 del_10p13 466 (82%) 105 9.9999e-06 0.0071 9.9999e-06 0.0071 0.0023 1 0.00119 0.688 9.9999e-06 0.0071 0.02853 1 0.00015 0.0907 0.00014 0.0848 0.088939 1 0.00314 1 del_10p11.23 471 (82%) 100 9.9999e-06 0.0071 9.9999e-06 0.0071 0.00013 0.0789 9.9999e-06 0.0071 9.9999e-06 0.0071 0.0111 1 0.00081999 0.477 0.00391 1 0.04588 1 0.00121 0.697 del_10q23.31 508 (89%) 63 9.9999e-06 0.0071 9.9999e-06 0.0071 0.01189 1 0.00328 1 9.9999e-06 0.0071 0.10642 1 0.01054 1 0.067899 1 0.36897 1 0.04229 1 del_10q26.3 509 (89%) 62 9.9999e-06 0.0071 5e-05 0.0308 0.04238 1 0.0012 0.692 9.9999e-06 0.0071 0.0055599 1 0.11746 1 0.04407 1 0.25105 1 0.03416 1 del_11p15.5 127 (22%) 444 9.9999e-06 0.0071 9.9999e-06 0.0071 0.16149 1 0.00178 1 9.9999e-06 0.0071 0.01925 1 0.16833 1 0.04509 1 0.0029 1 0.00142 0.814 del_11p11.2 103 (18%) 468 9.9999e-06 0.0071 9.9999e-06 0.0071 0.50476 1 0.01841 1 9.9999e-06 0.0071 0.10297 1 0.93277 1 0.66176 1 0.093069 1 0.086789 1 del_11q14.1 95 (17%) 476 9.9999e-06 0.0071 0.00056999 0.337 0.87752 1 0.1381 1 9.9999e-06 0.0071 0.52268 1 0.75574 1 0.67861 1 0.12045 1 0.16187 1 del_12p13.1 72 (13%) 499 0.04929 1 0.01326 1 0.25232 1 0.23462 1 0.063009 1 0.42499 1 0.67893 1 0.55953 1 1 1 0.93269 1 del_12q12 76 (13%) 495 0.01351 1 0.00066999 0.395 0.26553 1 0.086099 1 0.00011 0.067 0.0395 1 0.097299 1 0.26992 1 1 1 0.66448 1 del_12q15 77 (13%) 494 0.00016 0.0963 0.00179 1 0.48967 1 0.42577 1 9.9999e-06 0.0071 0.04236 1 0.55024 1 0.71792 1 0.71414 1 0.39551 1 del_13q14.2 237 (42%) 334 9.9999e-06 0.0071 2e-05 0.0128 0.35281 1 0.14613 1 9.9999e-06 0.0071 0.0066299 1 0.85314 1 0.11432 1 0.079599 1 0.068319 1 del_14q13.1 176 (31%) 395 3e-05 0.0188 0.00017 0.102 0.61274 1 0.66522 1 9.9999e-06 0.0071 0.24281 1 0.61999 1 0.20604 1 0.44966 1 0.9433 1 del_14q24.2 172 (30%) 399 9.9999e-06 0.0071 2e-05 0.0128 0.057649 1 0.15384 1 9.9999e-06 0.0071 0.0346 1 0.55456 1 0.059089 1 0.086369 1 0.94057 1 del_15q14 150 (26%) 421 4e-05 0.0248 2e-05 0.0128 0.00127 0.729 5e-05 0.0308 9.9999e-06 0.0071 0.0092399 1 0.057389 1 0.04918 1 0.00102 0.593 0.01688 1 del_16p12.2 92 (16%) 479 0.40885 1 0.20318 1 0.28371 1 0.87031 1 0.22247 1 0.10356 1 0.40283 1 0.070199 1 0.44135 1 0.33437 1 del_16q23.3 97 (17%) 474 0.02216 1 0.57476 1 0.86452 1 0.41152 1 0.0060299 1 0.65127 1 0.0386 1 0.00257 1 0.52782 1 0.72228 1 del_17p13.2 86 (15%) 485 0.00317 1 0.02615 1 0.95009 1 0.94808 1 9.9999e-06 0.0071 0.080099 1 0.63141 1 0.41073 1 0.58618 1 0.81889 1 del_17p13.1 95 (17%) 476 0.00041 0.244 0.00282 1 0.68621 1 0.89427 1 9.9999e-06 0.0071 0.01138 1 0.70751 1 0.35005 1 0.6452 1 0.66535 1 del_17q11.2 71 (12%) 500 2e-05 0.0128 2e-05 0.0128 0.00214 1 0.01035 1 3e-05 0.0188 0.63429 1 0.0062399 1 0.0091099 1 0.53835 1 0.56589 1 del_18q22.3 81 (14%) 490 0.1268 1 0.084609 1 0.78725 1 0.39013 1 4e-05 0.0248 0.03461 1 0.01086 1 0.0071999 1 0.19685 1 0.27349 1 del_19q13.41 99 (17%) 472 0.00358 1 9.9999e-06 0.0071 0.04074 1 0.02143 1 0.00161 0.918 0.11099 1 0.052969 1 0.33473 1 0.03458 1 0.095589 1 del_21q22.11 46 (8%) 525 0.00153 0.875 0.00016 0.0963 0.00496 1 0.12572 1 0.00197 1 0.29628 1 0.15557 1 0.1102 1 0.68155 1 1 1 del_22q13.32 211 (37%) 360 0.71581 1 0.97112 1 0.03969 1 0.41018 1 4e-05 0.0248 0.27472 1 0.79384 1 0.3253 1 0.050359 1 0.084989 1 del_xp22.2 116 (20%) 455 0.0057399 1 0.00162 0.922 0.11203 1 0.17136 1 9.9999e-06 0.0071 0.01997 1 0.68176 1 0.24821 1 0.30663 1 0.67208 1 del_xq23 107 (19%) 464 0.01919 1 0.0096899 1 0.097929 1 0.19264 1 9.9999e-06 0.0071 0.058779 1 0.91173 1 0.44096 1 0.17157 1 0.50589 1