Clinical Features	Time to Death		AGE		NEOPLASM.DISEASESTAGE		PATHOLOGY.T.STAGE		PATHOLOGY.N.STAGE		PATHOLOGY.M.STAGE		GENDER		KARNOFSKY.PERFORMANCE.SCORE		NUMBERPACKYEARSSMOKED		RACE		ETHNICITY	
	nCNV (%)	nWild-Type	logrank test_P	logrank test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
3p gain	8 (12%)	58	100	1	0.08366	1	0.01598	1	0.46632	1	0.032692	1	0.25574	1	0.12762	1	NA	NA	NA	NA	0.29523	1	1	1
3q gain	8 (12%)	58	100	1	0.08366	1	0.01552	1	0.46531	1	0.032692	1	0.2527	1	0.12762	1	NA	NA	NA	NA	0.29375	1	1	1
4p gain	24 (36%)	42	100	1	0.26544	1	0.14021	1	0.80549	1	1	1	0.11066	1	1	1	1	1	0.046719	1	1	1	0.28699	1
4q gain	24 (36%)	42	100	1	0.26544	1	0.13973	1	0.80998	1	1	1	0.11294	1	1	1	1	1	0.046719	1	1	1	0.28699	1
5p gain	8 (12%)	58	100	1	0.06607	1	0.00141	0.836	0.36392	1	0.087416	1	0.0076899	1	0.45546	1	NA	NA	NA	NA	1	1	1	1
5q gain	8 (12%)	58	100	1	0.06607	1	0.00167	0.989	0.36393	1	0.087416	1	0.0074499	1	0.45546	1	NA	NA	NA	NA	1	1	1	1
7p gain	24 (36%)	42	100	1	0.17162	1	0.35983	1	0.68953	1	0.6361	1	0.11061	1	0.19497	1	1	1	0.78371	1	1	1	0.30328	1
7q gain	24 (36%)	42	100	1	0.17162	1	0.36163	1	0.68855	1	0.6361	1	0.11339	1	0.19497	1	1	1	0.78371	1	1	1	0.30328	1
8p gain	17 (26%)	49	100	1	0.14235	1	0.38872	1	0.40848	1	1	1	0.66306	1	0.77561	1	1	1	0.39401	1	1	1	0.58768	1
8q gain	18 (27%)	48	100	1	0.14972	1	0.227	1	0.45083	1	1	1	0.12238	1	0.57661	1	1	1	0.39401	1	1	1	0.58768	1
9p gain	10 (15%)	56	100	1	0.97859	1	0.12053	1	0.19166	1	0.30573	1	1	1	1	1	NA	NA	0.75893	1	0.37608	1	0.53476	1
9q gain	10 (15%)	56	100	1	0.97859	1	0.12214	1	0.19296	1	0.30573	1	1	1	1	1	NA	NA	0.75893	1	0.37346	1	0.53476	1
10p gain	4 (6%)	62	100	1	0.33982	1	0.26947	1	0.45494	1	NA	NA	NA	NA	1	1	NA	NA	NA	NA	1	1	1	1
11p gain	15 (23%)	51	100	1	0.81243	1	0.74107	1	0.81039	1	0.61737	1	0.38456	1	1	1	NA	NA	0.046719	1	0.5585	1	0.07563	1
11q gain	15 (23%)	51	100	1	0.94508	1	0.74069	1	0.80976	1	1	1	0.3832	1	1	1	NA	NA	0.046719	1	0.56082	1	0.07563	1
12p gain	19 (29%)	47	100	1	0.013683	1	0.077899	1	0.31621	1	1	1	0.13571	1	0.41203	1	1	1	0.35723	1	1	1	1	1
12q gain	20 (30%)	46	100	1	0.069554	1	0.11169	1	0.71023	1	0.33007	1	0.13569	1	0.59328	1	1	1	0.23427	1	0.80838	1	1	1
14q gain	21 (32%)	45	100	1	0.14427	1	0.096779	1	0.38074	1	1	1	0.15326	1	0.79421	1	1	1	0.23427	1	1	1	0.60915	1
15q gain	21 (32%)	45	100	1	0.28265	1	0.41245	1	0.47719	1	0.35044	1	0.15458	1	0.79421	1	1	1	1	1	0.81387	1	0.12381	1
16p gain	21 (32%)	45	100	1	0.9945	1	0.47485	1	0.4059	1	0.63533	1	0.72299	1	1	1	1	1	0.046719	1	1	1	0.12381	1
16q gain	21 (32%)	45	100	1	0.9945	1	0.47445	1	0.40474	1	0.63533	1	0.72624	1	1	1	1	1	0.046719	1	1	1	0.12381	1
18p gain	17 (26%)	49	100	1	0.27763	1	0.28986	1	0.43323	1	0.30335	1	0.50356	1	0.77561	1	NA	NA	0.29752	1	1	1	0.57049	1
18q gain	16 (24%)	50	100	1	0.52462	1	0.31166	1	0.1983	1	0.30335	1	0.50576	1	1	1	NA	NA	0.29752	1	1	1	0.30481	1
19p gain	19 (29%)	47	100	1	0.029102	1	0.01477	1	0.5177	1	0.0024579	1	0.083409	1	0.41203	1	NA	NA	0.78371	1	0.25897	1	0.29038	1
19q gain	17 (26%)	49	100	1	0.013712	1	0.29572	1	0.64432	1	0.13589	1	0.061349	1	0.77561	1	NA	NA	1	1	0.59335	1	0.29038	1
20p gain	20 (30%)	46	100	1	0.1281	1	0.37025	1	0.79176	1	0.35044	1	0.70847	1	0.59328	1	1	1	0.23427	1	0.36658	1	0.58768	1
20q gain	21 (32%)	45	100	1	0.052958	1	0.13837	1	0.84605	1	0.35044	1	0.70845	1	0.433	1	1	1	0.23427	1	0.36914	1	0.60915	1
21q gain	4 (6%)	62	100	1	0.59075	1	1	1	1	1	NA	NA	NA	NA	1	1	NA	NA	NA	NA	1	1	1	1
22q gain	19 (29%)	47	100	1	0.41522	1	0.4881	1	0.52044	1	0.16558	1	0.35521	1	0.41203	1	NA	NA	0.78371	1	0.79366	1	0.58768	1
xq gain	6 (9%)	60	100	1	0.81473	1	0.38223	1	0.66231	1	1	1	0.19191	1	0.38804	1	NA	NA	NA	NA	0.45793	1	0.38953	1
1p loss	53 (80%)	13	100	1	0.47784	1	0.02779	1	0.04085	1	1	1	0.0066299	1	0.53446	1	0.43793	1	0.60902	1	1	1	1	1
1q loss	52 (79%)	14	100	1	0.45601	1	0.0062499	1	0.01317	1	0.52875	1	0.02027	1	0.36732	1	0.43793	1	NA	NA	1	1	1	1
2p loss	46 (70%)	20	100	1	0.24094	1	0.14432	1	0.1134	1	1	1	0.19155	1	0.28399	1	0.43793	1	NA	NA	1	1	1	1
2q loss	46 (70%)	20	100	1	0.24094	1	0.14388	1	0.1137	1	1	1	0.19391	1	0.28399	1	0.43793	1	NA	NA	1	1	1	1
3p loss	9 (14%)	57	100	1	0.046481	1	0.075979	1	0.02315	1	1	1	0.6588	1	0.46918	1	NA	NA	NA	NA	1	1	0.53476	1
3q loss	8 (12%)	58	100	1	0.10699	1	0.14085	1	0.052229	1	1	1	0.63801	1	0.25608	1	NA	NA	NA	NA	1	1	0.53476	1
5p loss	10 (15%)	56	100	1	0.64177	1	0.132	1	0.084679	1	1	1	1	1	1	1	NA	NA	0.15543	1	0.15864	1	0.12121	1
5q loss	10 (15%)	56	100	1	0.64177	1	0.1342	1	0.085499	1	1	1	1	1	1	1	NA	NA	0.15543	1	0.15758	1	0.12121	1
6p loss	51 (77%)	15	100	1	0.37871	1	0.083409	1	0.056329	1	0.56754	1	0.16864	1	0.24419	1	0.43793	1	NA	NA	1	1	1	1
6q loss	51 (77%)	15	100	1	0.37871	1	0.083319	1	0.055899	1	0.56754	1	0.16986	1	0.24419	1	0.43793	1	NA	NA	1	1	1	1
8p loss	9 (14%)	57	100	1	0.77915	1	0.74122	1	0.43801	1	1	1	1	1	0.72701	1	NA	NA	NA	NA	0.61288	1	0.56578	1
8q loss	8 (12%)	58	100	1	0.57532	1	0.70189	1	0.41174	1	1	1	1	1	1	1	NA	NA	NA	NA	0.56672	1	1	1
9p loss	10 (15%)	56	100	1	0.011638	1	1	1	1	1	0.52875	1	0.49212	1	0.5083	1	NA	NA	NA	NA	1	1	0.53476	1
9q loss	10 (15%)	56	100	1	0.011638	1	1	1	1	1	0.52875	1	0.48819	1	0.5083	1	NA	NA	NA	NA	1	1	0.53476	1
10p loss	48 (73%)	18	100	1	0.76226	1	0.5452	1	0.3934	1	1	1	0.01972	1	1	1	0.14583	1	0.26049	1	1	1	1	1
10q loss	49 (74%)	17	100	1	0.9532	1	0.3474	1	0.20883	1	1	1	0.0189	1	1	1	0.14583	1	0.26049	1	1	1	1	1
11p loss	7 (11%)	59	100	1	0.052659	1	0.095969	1	0.079859	1	0.46143	1	1	1	0.69108	1	NA	NA	NA	NA	1	1	1	1
11q loss	7 (11%)	59	100	1	0.052659	1	0.096659	1	0.078579	1	0.46143	1	1	1	0.69108	1	NA	NA	NA	NA	1	1	1	1
13q loss	43 (65%)	23	100	1	0.064122	1	0.44709	1	0.35853	1	0.30071	1	0.53541	1	0.2941	1	1	1	0.47395	1	0.81679	1	1	1
16p loss	4 (6%)	62	NA	NA	0.51873	1	0.00031	0.184	0.0064999	1	3.3558e-05	0.02	NA	NA	0.63912	1	NA	NA	NA	NA	1	1	1	1
16q loss	5 (8%)	61	NA	NA	0.2208	1	0.00466	1	0.0481	1	0.00016452	0.0979	NA	NA	0.64106	1	NA	NA	NA	NA	1	1	1	1
17p loss	50 (76%)	16	100	1	0.14856	1	0.074949	1	0.0418	1	0.56754	1	0.17101	1	0.15789	1	0.43793	1	NA	NA	1	1	1	1
17q loss	50 (76%)	16	100	1	0.14856	1	0.073689	1	0.04192	1	0.56754	1	0.16927	1	0.15789	1	0.43793	1	NA	NA	1	1	1	1
18p loss	8 (12%)	58	100	1	0.45508	1	0.44314	1	0.89789	1	0.21076	1	0.6597	1	0.25608	1	NA	NA	NA	NA	0.29643	1	1	1
18q loss	10 (15%)	56	100	1	0.34296	1	0.14013	1	0.83523	1	0.25752	1	0.65957	1	0.29506	1	NA	NA	NA	NA	0.37468	1	1	1
19q loss	3 (5%)	63	100	1	0.42325	1	0.01196	1	0.19101	1	0.028894	1	NA	NA	1	1	NA	NA	NA	NA	0.10043	1	0.11111	1
20p loss	4 (6%)	62	100	1	0.23679	1	0.13776	1	0.14196	1	0.30374	1	1	1	1	1	NA	NA	NA	NA	1	1	1	1
20q loss	3 (5%)	63	NA	NA	0.43222	1	0.041	1	0.026	1	0.30374	1	1	1	1	1	NA	NA	NA	NA	1	1	NA	NA
21q loss	35 (53%)	31	100	1	0.37509	1	0.90549	1	0.78115	1	0.07309	1	0.077919	1	0.80476	1	0.44794	1	0.70482	1	0.54363	1	0.61294	1
22q loss	8 (12%)	58	100	1	0.78316	1	0.17879	1	1	1	0.21076	1	0.32102	1	0.055318	1	NA	NA	NA	NA	0.56546	1	0.38953	1
xq loss	39 (59%)	27	100	1	0.092322	1	0.30377	1	0.35804	1	1	1	0.14756	1	0.13624	1	0.1322	1	0.16993	1	0.81864	1	1	1