Clinical Features	Time to Death		AGE		NEOPLASM.DISEASESTAGE		PATHOLOGY.T.STAGE		PATHOLOGY.N.STAGE		PATHOLOGY.M.STAGE		GENDER		KARNOFSKY.PERFORMANCE.SCORE		NUMBERPACKYEARSSMOKED		RACE		ETHNICITY	
	nCNV (%)	nWild-Type	logrank test_P	logrank test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	23 (5%)	482	0.20544	1	0.2119	1	0.29402	1	0.36078	1	0.21293	1	0.59827	1	1	1	0.45028	1	NA	NA	0.45003	1	1	1
1q gain	50 (10%)	455	0.67756	1	0.037505	1	0.12568	1	0.16351	1	0.42572	1	0.75034	1	0.64396	1	0.69966	1	NA	NA	0.89789	1	0.71925	1
2p gain	75 (15%)	430	0.26276	1	0.15245	1	0.15917	1	0.59739	1	0.74413	1	0.34452	1	0.89626	1	0.2524	1	NA	NA	0.78798	1	0.54121	1
2q gain	77 (15%)	428	0.58314	1	0.24451	1	0.35879	1	0.7357	1	1	1	0.4465	1	0.36449	1	0.58849	1	NA	NA	0.73856	1	0.35272	1
3p gain	19 (4%)	486	0.16911	1	0.51792	1	0.16889	1	0.22215	1	0.046833	1	0.15616	1	0.32754	1	0.97591	1	NA	NA	1	1	1	1
3q gain	60 (12%)	445	0.53871	1	0.9191	1	0.00126	0.917	0.00013	0.0974	0.008678	1	0.01364	1	0.77553	1	0.54164	1	NA	NA	0.75384	1	1	1
4p gain	13 (3%)	492	0.016144	1	0.77588	1	0.46749	1	0.19999	1	0.49831	1	1	1	0.55755	1	NA	NA	NA	NA	0.67729	1	1	1
4q gain	13 (3%)	492	0.019614	1	0.77588	1	0.57345	1	0.71879	1	0.45764	1	0.76691	1	1	1	NA	NA	NA	NA	0.67919	1	1	1
5p gain	187 (37%)	318	0.14443	1	0.00020688	0.154	0.13828	1	0.2332	1	0.62237	1	1	1	0.026378	1	0.62939	1	NA	NA	0.056149	1	1	1
5q gain	200 (40%)	305	0.085751	1	0.00056835	0.419	0.39159	1	0.40144	1	1	1	1	1	0.029034	1	0.62939	1	NA	NA	0.02572	1	0.83286	1
6p gain	11 (2%)	494	0.47743	1	0.79513	1	0.3731	1	0.25705	1	1	1	0.74491	1	0.34285	1	NA	NA	NA	NA	0.61344	1	1	1
6q gain	9 (2%)	496	0.34418	1	0.36208	1	0.25488	1	0.2948	1	1	1	1	1	0.16966	1	NA	NA	NA	NA	0.54002	1	1	1
7p gain	167 (33%)	338	0.96511	1	0.39304	1	0.080399	1	0.13602	1	0.44787	1	0.050049	1	0.0040082	1	0.54558	1	NA	NA	0.10201	1	0.36497	1
7q gain	168 (33%)	337	0.36091	1	0.43914	1	0.01679	1	0.062689	1	0.44172	1	0.0061699	1	0.010108	1	0.25788	1	NA	NA	0.098799	1	0.16876	1
8p gain	29 (6%)	476	0.044456	1	0.19858	1	0.0054699	1	0.00329	1	1	1	0.33838	1	0.69307	1	0.4414	1	NA	NA	0.52435	1	0.62243	1
8q gain	60 (12%)	445	0.066997	1	0.051008	1	0.01694	1	0.02068	1	0.45076	1	0.19079	1	0.15191	1	0.82821	1	NA	NA	0.91543	1	0.49089	1
9p gain	13 (3%)	492	0.32463	1	0.67604	1	0.94756	1	0.051589	1	1	1	0.39705	1	0.015461	1	NA	NA	NA	NA	0.36541	1	0.54333	1
9q gain	12 (2%)	493	0.80262	1	0.33893	1	0.23599	1	0.00288	1	1	1	1	1	0.12424	1	NA	NA	NA	NA	0.6483	1	0.54333	1
10p gain	17 (3%)	488	0.21796	1	0.095728	1	0.36008	1	0.1084	1	0.10741	1	0.80965	1	0.79742	1	0.22205	1	NA	NA	0.71105	1	1	1
10q gain	12 (2%)	493	0.070752	1	0.015296	1	0.8266	1	0.88407	1	0.26163	1	1	1	0.3598	1	0.58674	1	NA	NA	1	1	1	1
11p gain	31 (6%)	474	0.28514	1	0.99238	1	0.04487	1	0.01961	1	1	1	0.14334	1	0.84687	1	1	1	NA	NA	1	1	1	1
11q gain	29 (6%)	476	0.7956	1	0.94083	1	0.22983	1	0.11334	1	1	1	0.29032	1	1	1	NA	NA	NA	NA	1	1	1	1
12p gain	119 (24%)	386	0.092445	1	0.13913	1	0.00097999	0.716	0.00318	1	0.089173	1	0.04051	1	0.58346	1	0.016326	1	NA	NA	0.51352	1	0.22268	1
12q gain	120 (24%)	385	0.10547	1	0.2646	1	0.00062999	0.464	0.00233	1	0.089173	1	0.04404	1	0.51229	1	0.016326	1	NA	NA	0.51492	1	0.22104	1
13q gain	22 (4%)	483	0.14643	1	0.25446	1	0.17152	1	0.25683	1	1	1	0.57947	1	0.25806	1	NA	NA	NA	NA	0.18168	1	0.085464	1
14q gain	16 (3%)	489	0.6623	1	0.47592	1	0.26517	1	0.0077899	1	1	1	0.4765	1	0.79779	1	NA	NA	NA	NA	1	1	1	1
15q gain	26 (5%)	479	0.60878	1	0.45094	1	0.63614	1	0.45523	1	0.21293	1	0.74159	1	0.67954	1	0.027492	1	NA	NA	1	1	1	1
16p gain	104 (21%)	401	0.85169	1	0.21938	1	0.20082	1	0.10814	1	0.13332	1	0.72621	1	0.73106	1	0.70847	1	NA	NA	0.4856	1	1	1
16q gain	96 (19%)	409	0.86324	1	0.30427	1	0.21708	1	0.071009	1	0.21125	1	1	1	1	1	0.86023	1	NA	NA	0.63164	1	1	1
17p gain	25 (5%)	480	0.46419	1	0.39823	1	0.082689	1	0.82266	1	0.21293	1	0.04715	1	0.8319	1	0.13895	1	NA	NA	0.02295	1	0.61087	1
17q gain	31 (6%)	474	0.59948	1	0.36592	1	0.52869	1	0.72858	1	0.29802	1	0.31471	1	1	1	0.82821	1	NA	NA	0.062439	1	0.61729	1
18p gain	25 (5%)	480	0.21359	1	0.80576	1	0.69483	1	0.8735	1	1	1	0.62259	1	0.086226	1	NA	NA	NA	NA	1	1	0.32275	1
18q gain	25 (5%)	480	0.22745	1	0.61988	1	0.5413	1	0.77538	1	0.60375	1	0.62031	1	0.086226	1	NA	NA	NA	NA	1	1	0.32275	1
19p gain	51 (10%)	454	0.35853	1	0.67745	1	0.0089499	1	0.02139	1	0.4044	1	0.02124	1	0.27914	1	0.31239	1	NA	NA	0.37877	1	0.72323	1
19q gain	57 (11%)	448	0.43655	1	0.39311	1	0.00237	1	0.0084699	1	0.43784	1	0.0076799	1	0.24312	1	0.31239	1	NA	NA	0.24473	1	0.74888	1
20p gain	110 (22%)	395	0.19225	1	0.25897	1	9.9999e-05	0.0751	9.9999e-06	0.00762	0.54616	1	0.02479	1	0.00071165	0.521	0.87785	1	NA	NA	0.74721	1	0.43539	1
20q gain	113 (22%)	392	0.090408	1	0.088898	1	7.9999e-05	0.0602	4e-05	0.0302	0.23735	1	0.03389	1	0.0050407	1	0.87785	1	NA	NA	0.79819	1	0.43565	1
21q gain	49 (10%)	456	0.33326	1	0.095138	1	0.25271	1	0.12358	1	1	1	0.58344	1	0.53153	1	0.84049	1	NA	NA	0.41793	1	0.47942	1
22q gain	40 (8%)	465	0.39092	1	0.56338	1	0.81673	1	0.10982	1	1	1	0.91445	1	0.30709	1	0.29054	1	NA	NA	0.65329	1	1	1
xq gain	29 (6%)	476	0.32743	1	0.83966	1	0.079209	1	0.13782	1	1	1	0.03675	1	0.84172	1	0.97591	1	NA	NA	0.44296	1	0.61729	1
1p loss	55 (11%)	450	0.032943	1	0.09259	1	0.54251	1	0.01546	1	0.70207	1	0.50129	1	0.23188	1	0.84049	1	NA	NA	0.22777	1	0.18369	1
1q loss	36 (7%)	469	0.30812	1	0.65596	1	0.79545	1	0.078509	1	1	1	0.3735	1	0.59181	1	1	1	NA	NA	0.60246	1	0.44282	1
2p loss	14 (3%)	491	0.012481	1	0.83628	1	0.43411	1	0.12616	1	1	1	0.77274	1	0.77892	1	NA	NA	NA	NA	0.03619	1	1	1
2q loss	14 (3%)	491	0.14179	1	0.81236	1	0.56141	1	0.22305	1	1	1	0.77448	1	0.77892	1	NA	NA	NA	NA	0.066579	1	1	1
3p loss	364 (72%)	141	0.73454	1	0.85907	1	0.02508	1	0.03803	1	0.79055	1	0.2419	1	0.022316	1	0.24842	1	NA	NA	0.12115	1	0.48626	1
3q loss	96 (19%)	409	0.063369	1	0.016881	1	0.64729	1	0.2816	1	0.74657	1	0.88615	1	0.0003471	0.257	0.42079	1	NA	NA	0.87864	1	0.57135	1
4p loss	71 (14%)	434	0.26493	1	0.90038	1	0.00026	0.193	0.00023	0.171	0.72596	1	0.03662	1	0.89351	1	0.32652	1	NA	NA	0.14191	1	0.37955	1
4q loss	65 (13%)	440	0.51654	1	0.82796	1	2e-05	0.0151	9.9999e-06	0.00762	0.46438	1	0.0071599	1	0.33068	1	0.54164	1	NA	NA	0.17766	1	0.54121	1
5p loss	7 (1%)	498	0.14346	1	0.25271	1	0.0019	1	0.00014	0.105	1	1	0.19053	1	0.24912	1	NA	NA	NA	NA	1	1	1	1
5q loss	6 (1%)	499	0.14346	1	0.15063	1	0.0056699	1	0.00033	0.245	1	1	0.32304	1	0.42996	1	NA	NA	NA	NA	1	1	1	1
6p loss	98 (19%)	407	0.1258	1	0.27095	1	0.059769	1	0.03566	1	0.0049441	1	0.19632	1	0.0014003	1	0.068916	1	NA	NA	0.10693	1	0.79121	1
6q loss	125 (25%)	380	0.73825	1	0.7538	1	0.33934	1	0.23737	1	0.0011774	0.858	0.90043	1	0.052731	1	0.62634	1	0.034661	1	0.21896	1	0.62711	1
7q loss	3 (1%)	502	NA	NA	0.5968	1	0.12712	1	0.01098	1	0.072581	1	1	1	0.55535	1	NA	NA	NA	NA	1	1	0.13118	1
8p loss	134 (27%)	371	0.54171	1	0.68335	1	0.35428	1	0.29197	1	0.77554	1	0.3303	1	0.057667	1	0.44895	1	0.2909	1	0.40961	1	0.026732	1
8q loss	62 (12%)	443	0.84712	1	0.80539	1	0.53436	1	0.35552	1	0.43784	1	0.74224	1	0.032535	1	0.44866	1	NA	NA	0.21319	1	0.036263	1
9p loss	144 (29%)	361	0.13315	1	0.058016	1	9.9999e-06	0.00762	4e-05	0.0302	0.099683	1	0.00070999	0.52	0.00062989	0.464	0.82375	1	NA	NA	0.14518	1	0.81728	1
9q loss	145 (29%)	360	0.38795	1	0.040854	1	9.9999e-06	0.00762	9.9999e-06	0.00762	0.1705	1	0.00163	1	0.00044319	0.328	0.53869	1	NA	NA	0.14757	1	0.64279	1
10p loss	65 (13%)	440	0.5371	1	0.47665	1	0.070089	1	0.0082499	1	0.14034	1	0.5638	1	0.33068	1	0.052105	1	NA	NA	0.69264	1	0.18369	1
10q loss	87 (17%)	418	0.63711	1	0.66761	1	0.10946	1	0.00253	1	0.32197	1	0.43567	1	0.10968	1	0.28169	1	NA	NA	0.45694	1	0.25253	1
11p loss	18 (4%)	487	0.070512	1	0.05456	1	0.45207	1	0.44198	1	0.15826	1	0.64581	1	1	1	0.58674	1	NA	NA	1	1	1	1
11q loss	23 (5%)	482	0.016449	1	0.0059932	1	0.67815	1	0.60241	1	0.24108	1	0.59971	1	0.38285	1	0.22205	1	NA	NA	1	1	1	1
12p loss	3 (1%)	502	0.66012	1	0.81292	1	0.48889	1	0.74208	1	1	1	1	1	1	1	NA	NA	NA	NA	1	1	1	1
12q loss	4 (1%)	501	0.66012	1	0.31484	1	0.17367	1	0.41484	1	1	1	1	1	1	1	NA	NA	NA	NA	1	1	1	1
13q loss	69 (14%)	436	0.002065	1	0.78261	1	0.00011	0.0825	9.9999e-06	0.00762	0.32077	1	0.063249	1	0.27884	1	0.75236	1	NA	NA	0.27876	1	0.22396	1
14q loss	211 (42%)	294	0.036616	1	0.18404	1	2e-05	0.0151	0.00015	0.112	0.0024041	1	0.00306	1	0.037648	1	0.12584	1	0.46512	1	0.14525	1	0.52878	1
15q loss	35 (7%)	470	0.40653	1	0.99136	1	0.00098999	0.723	0.00047	0.347	1	1	0.03864	1	0.065393	1	1	1	NA	NA	0.16724	1	0.38098	1
16p loss	9 (2%)	496	0.60548	1	0.98341	1	0.2494	1	0.0088499	1	0.36676	1	1	1	1	1	NA	NA	NA	NA	0.54074	1	1	1
16q loss	13 (3%)	492	0.51797	1	0.68808	1	0.29842	1	0.00381	1	0.45764	1	1	1	1	1	NA	NA	NA	NA	0.67702	1	1	1
17p loss	44 (9%)	461	0.042749	1	0.407	1	0.20584	1	0.17042	1	0.37604	1	0.092689	1	0.18568	1	0.10109	1	NA	NA	1	1	0.7076	1
17q loss	28 (6%)	477	0.7772	1	0.78936	1	0.34302	1	0.32526	1	1	1	0.32374	1	0.3103	1	NA	NA	NA	NA	0.80874	1	1	1
18p loss	91 (18%)	414	0.062371	1	0.11209	1	0.00034	0.252	0.00032	0.238	1	1	0.071069	1	0.14797	1	0.77127	1	NA	NA	0.58467	1	0.094556	1
18q loss	93 (18%)	412	0.0069684	1	0.13594	1	0.0092099	1	0.0048	1	1	1	0.095379	1	0.11846	1	0.91619	1	NA	NA	0.58965	1	0.27614	1
19p loss	11 (2%)	494	NA	NA	0.093489	1	0.02798	1	0.00068999	0.506	1	1	0.50429	1	0.75417	1	NA	NA	NA	NA	0.19019	1	1	1
19q loss	4 (1%)	501	NA	NA	0.84689	1	0.24111	1	0.00307	1	1	1	0.17898	1	1	1	NA	NA	NA	NA	1	1	1	1
20p loss	8 (2%)	497	0.54676	1	0.70436	1	0.72751	1	0.61761	1	1	1	0.45469	1	1	1	NA	NA	NA	NA	0.13205	1	0.24577	1
20q loss	3 (1%)	502	NA	NA	0.11569	1	0.23999	1	0.11145	1	NA	NA	0.43347	1	1	1	NA	NA	NA	NA	1	1	0.067797	1
21q loss	53 (10%)	452	0.78225	1	0.54623	1	0.1758	1	0.00365	1	0.092732	1	0.87846	1	0.65144	1	0.96154	1	NA	NA	0.63808	1	1	1
22q loss	38 (8%)	467	0.0018348	1	0.24867	1	0.01734	1	0.1475	1	1	1	0.14895	1	0.72515	1	0.3978	1	NA	NA	0.85958	1	0.031532	1
xq loss	45 (9%)	460	0.0344	1	0.35811	1	0.71391	1	0.19903	1	0.32648	1	0.85836	1	0.14085	1	NA	NA	NA	NA	0.67479	1	0.24468	1