Clinical Features	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1q24.1	62 (12%)	465	0.25752	1	0.78781	1	9.9999e-06	0.00348	0.13497	1	0.28898	1	0.33485	1	5e-05	0.0127	0.00406	0.763	9.9999e-06	0.00348	0.24546	1	0.00246	0.49	0.22284	1
amp_1q32.1	62 (12%)	465	0.41009	1	0.8988	1	9.9999e-06	0.00348	0.0381	1	0.16078	1	0.1461	1	9.9999e-06	0.00348	0.0055599	0.995	4e-05	0.0104	0.28047	1	0.00038	0.0859	0.3038	1
amp_3q26.32	87 (17%)	440	0.057589	1	0.12092	1	9.9999e-06	0.00348	2e-05	0.00546	0.00294	0.579	9.9999e-06	0.00348	9.9999e-06	0.00348	9.9999e-06	0.00348	9.9999e-06	0.00348	0.00021	0.0489	0.00131	0.271	0.04322	1
amp_4q32.1	16 (3%)	511	0.18966	1	0.7771	1	0.40334	1	0.70422	1	0.65367	1	0.16917	1	0.01812	1	0.02381	1	0.00106	0.227	0.47706	1	0.2117	1	0.21926	1
amp_5q35.1	332 (63%)	195	0.063099	1	0.04912	1	0.00017	0.0405	0.40226	1	0.0084999	1	0.00431	0.806	0.0014	0.287	0.00023	0.0531	0.1949	1	0.093539	1	0.73584	1	0.02378	1
amp_7q36.3	176 (33%)	351	0.45435	1	0.85857	1	9.9999e-06	0.00348	0.0061399	1	0.00016	0.0386	0.0095899	1	2e-05	0.00546	0.00371	0.714	0.00251	0.497	0.02829	1	0.03375	1	0.04522	1
amp_8q24.22	79 (15%)	448	0.2247	1	0.10379	1	9.9999e-06	0.00348	2e-05	0.00546	9.9999e-06	0.00348	0.00064999	0.143	9.9999e-06	0.00348	9.9999e-06	0.00348	9.9999e-06	0.00348	9.9999e-06	0.00348	9.9999e-06	0.00348	5.9999e-05	0.0151
amp_10p14	20 (4%)	507	0.1879	1	0.77396	1	2e-05	0.00546	0.17826	1	0.74248	1	0.36661	1	0.00174	0.35	5e-05	0.0127	0.079499	1	0.03098	1	0.82796	1	0.0080299	1
amp_xp22.2	31 (6%)	496	1	1	0.52506	1	0.00072999	0.16	0.23551	1	0.00109	0.231	0.03159	1	0.053759	1	0.0072999	1	0.04997	1	0.23262	1	0.11744	1	0.15643	1
amp_xp11.4	33 (6%)	494	0.84493	1	0.79652	1	0.00016	0.0386	0.11345	1	0.00074999	0.163	0.00365	0.712	0.0294	1	0.00045	0.1	0.03208	1	0.33951	1	0.060019	1	0.1049	1
amp_xq11.2	29 (6%)	498	0.17008	1	0.15963	1	0.01811	1	0.25338	1	0.083799	1	0.072049	1	0.18564	1	0.30883	1	0.10102	1	0.46208	1	0.21128	1	0.24256	1
amp_xq28	37 (7%)	490	0.48645	1	0.70416	1	0.065719	1	0.64055	1	0.03689	1	0.22902	1	0.11051	1	0.077659	1	0.10603	1	0.32618	1	0.10585	1	0.45738	1
del_1p36.23	103 (20%)	424	0.00015	0.0363	0.00089999	0.194	9.9999e-06	0.00348	0.078269	1	3e-05	0.00786	7.9999e-05	0.0198	4e-05	0.0104	9.9999e-06	0.00348	9.9999e-06	0.00348	2e-05	0.00546	0.00055999	0.124	0.00013	0.0316
del_1p31.1	77 (15%)	450	0.00168	0.341	0.0067399	1	9.9999e-06	0.00348	0.10205	1	9.9999e-05	0.0245	0.00108	0.23	0.0094399	1	7.9999e-05	0.0198	9.9999e-06	0.00348	0.00016	0.0386	0.01123	1	0.0050399	0.917
del_1q43	42 (8%)	485	0.01077	1	0.01112	1	0.00437	0.813	0.36902	1	0.0058499	1	0.04979	1	0.00448	0.82	2e-05	0.00546	0.060519	1	0.0044	0.814	0.95535	1	0.24501	1
del_2q37.3	50 (9%)	477	0.00169	0.341	0.00033	0.0752	0.86289	1	0.65951	1	0.13952	1	0.43134	1	5.9999e-05	0.0151	9.9999e-06	0.00348	0.03566	1	0.01105	1	0.14305	1	0.00441	0.814
del_3p25.3	462 (88%)	65	9.9999e-06	0.00348	9.9999e-06	0.00348	9.9999e-06	0.00348	9.9999e-06	0.00348	4e-05	0.0104	0.02221	1	9.9999e-06	0.00348	9.9999e-06	0.00348	2e-05	0.00546	3e-05	0.00786	0.00092999	0.2	9.9999e-06	0.00348
del_3p12.3	334 (63%)	193	0.00384	0.726	0.01866	1	9.9999e-06	0.00348	2e-04	0.0468	0.49404	1	0.49758	1	5.9999e-05	0.0151	9.9999e-06	0.00348	0.095029	1	0.25847	1	0.03473	1	0.15682	1
del_3p11.2	246 (47%)	281	0.16947	1	0.15553	1	9.9999e-06	0.00348	0.11019	1	0.78841	1	0.33809	1	0.11897	1	9.9999e-06	0.00348	0.83272	1	0.67708	1	0.076679	1	0.9853	1
del_3q11.2	161 (31%)	366	0.18112	1	0.1674	1	9.9999e-06	0.00348	0.04879	1	0.86673	1	0.48509	1	0.60736	1	6.9999e-05	0.0174	0.82058	1	0.73178	1	0.35758	1	0.73641	1
del_4q34.3	78 (15%)	449	0.23956	1	0.49529	1	9.9999e-06	0.00348	9.9999e-06	0.00348	0.01094	1	0.04267	1	0.00026	0.0598	2e-05	0.00546	0.33916	1	0.00196	0.392	0.01747	1	0.01566	1
del_6q26	151 (29%)	376	0.01495	1	0.097989	1	9.9999e-06	0.00348	0.01331	1	2e-05	0.00546	0.00033	0.0752	0.00044	0.0986	0.00113	0.237	9.9999e-06	0.00348	0.0054799	0.986	0.00017	0.0405	0.083819	1
del_6q26	151 (29%)	376	0.01514	1	0.099019	1	9.9999e-06	0.00348	0.01243	1	9.9999e-06	0.00348	3e-04	0.0687	0.00018	0.0425	0.00076999	0.167	9.9999e-06	0.00348	0.0051499	0.932	9.9999e-06	0.00348	0.084939	1
del_8p23.2	154 (29%)	373	0.50273	1	0.24654	1	9.9999e-06	0.00348	0.04018	1	0.0071499	1	0.04173	1	0.0011	0.232	9.9999e-06	0.00348	0.00056999	0.126	0.00122	0.255	0.058119	1	0.01253	1
del_9p23	152 (29%)	375	0.0037	0.714	0.03576	1	9.9999e-06	0.00348	9.9999e-06	0.00348	9.9999e-06	0.00348	0.00018	0.0425	9.9999e-06	0.00348	9.9999e-06	0.00348	9.9999e-06	0.00348	9.9999e-06	0.00348	9.9999e-06	0.00348	3e-05	0.00786
del_9p21.3	159 (30%)	368	0.00122	0.255	0.01634	1	9.9999e-06	0.00348	9.9999e-06	0.00348	9.9999e-06	0.00348	4e-05	0.0104	9.9999e-06	0.00348	9.9999e-06	0.00348	9.9999e-06	0.00348	9.9999e-06	0.00348	9.9999e-06	0.00348	9.9999e-06	0.00348
del_10q23.31	96 (18%)	431	0.44145	1	0.54245	1	9.9999e-06	0.00348	0.00142	0.29	0.97881	1	0.00382	0.726	0.052149	1	0.00011	0.0268	0.01835	1	0.00371	0.714	0.21957	1	0.03231	1
del_13q13.3	81 (15%)	446	0.01427	1	0.084719	1	9.9999e-06	0.00348	0.00021	0.0489	9.9999e-06	0.00348	0.00361	0.708	2e-05	0.00546	9.9999e-06	0.00348	9.9999e-06	0.00348	9.9999e-06	0.00348	0.053519	1	0.00138	0.284
del_14q31.1	228 (43%)	299	7.9999e-05	0.0198	0.00041	0.0922	9.9999e-06	0.00348	9.9999e-06	0.00348	9.9999e-06	0.00348	4e-05	0.0104	9.9999e-06	0.00348	9.9999e-06	0.00348	9.9999e-06	0.00348	9.9999e-06	0.00348	2e-05	0.00546	0.00365	0.712