Clinical Features	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nMutated (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
SETD2	44 (11%)	373	1	1	0.49947	1	0.66757	1	9.9999e-06	0.00269	0.63949	1	0.16068	1	0.46366	1	0.079959	1	0.77766	1	0.76221	1	0.62091	1	0.059239	1
BAP1	41 (10%)	376	0.03147	1	0.00054999	0.143	0.011	1	0.00012	0.0314	0.00084999	0.218	0.065979	1	4e-05	0.0106	9.9999e-06	0.00269	6.9999e-05	0.0184	9.9999e-06	0.00269	0.35145	1	0.03709	1
PTEN	18 (4%)	399	0.10653	1	0.03194	1	0.21215	1	0.16843	1	0.25877	1	0.15583	1	0.00097999	0.25	0.00111	0.282	0.0086699	1	0.04102	1	0.01573	1	0.055189	1
PBRM1	136 (33%)	281	0.15257	1	0.058969	1	0.13849	1	3e-05	0.00795	0.00070999	0.183	0.25326	1	0.0064199	1	0.02703	1	0.00379	0.947	0.059869	1	9.9999e-06	0.00269	0.054469	1
KDM5C	26 (6%)	391	NA	NA	NA	NA	0.1879	1	0.089129	1	0.43588	1	0.75554	1	0.10946	1	0.00068999	0.179	0.00426	1	0.63496	1	0.37369	1	0.1368	1
VHL	166 (40%)	251	0.11269	1	0.22556	1	0.1145	1	0.74847	1	0.77404	1	0.39266	1	0.01397	1	0.51342	1	0.16079	1	0.00267	0.673	0.67212	1	0.15908	1
FAM200A	5 (1%)	412	NA	NA	NA	NA	0.0014	0.354	NA	NA	0.03102	1	0.3179	1	0.15889	1	0.41152	1	0.20738	1	0.58607	1	NA	NA	NA	NA
TP53	9 (2%)	408	NA	NA	NA	NA	0.76701	1	0.5109	1	0.5145	1	0.64792	1	0.45567	1	0.31149	1	0.46355	1	0.17312	1	0.22748	1	0.27091	1
NEFH	5 (1%)	412	NA	NA	NA	NA	0.85751	1	0.54033	1	0.97796	1	0.11611	1	0.01243	1	0.01619	1	0.61791	1	0.40501	1	0.68288	1	1	1
CCDC120	4 (1%)	413	NA	NA	NA	NA	0.1829	1	NA	NA	0.56427	1	0.79354	1	0.67453	1	0.81596	1	0.82235	1	1	1	0.61342	1	0.16254	1
MTOR	23 (6%)	394	NA	NA	NA	NA	0.56459	1	0.15436	1	0.00047	0.123	0.00075999	0.195	0.65689	1	0.4475	1	0.34497	1	0.03263	1	0.064699	1	0.0033	0.828
GUSB	4 (1%)	413	NA	NA	NA	NA	0.68375	1	NA	NA	0.44852	1	0.44649	1	0.1846	1	0.1947	1	0.45884	1	0.51564	1	NA	NA	NA	NA
PIK3CA	12 (3%)	405	NA	NA	NA	NA	0.29446	1	0.65505	1	0.88856	1	0.73023	1	0.28654	1	0.53725	1	0.75121	1	0.80036	1	0.61248	1	0.60524	1
PCK1	5 (1%)	412	NA	NA	NA	NA	0.22658	1	0.61454	1	1	1	0.68469	1	0.84751	1	0.68196	1	0.72437	1	0.4883	1	NA	NA	NA	NA
ARID1A	12 (3%)	405	NA	NA	NA	NA	0.65611	1	0.26135	1	0.96892	1	0.92954	1	0.30759	1	0.64622	1	0.11574	1	0.070969	1	0.28346	1	0.84752	1
ATM	11 (3%)	406	NA	NA	NA	NA	0.50833	1	0.47581	1	0.51201	1	0.70717	1	0.21737	1	0.6158	1	0.11382	1	0.52562	1	0.078209	1	0.04543	1
DPCR1	6 (1%)	411	NA	NA	NA	NA	0.45312	1	0.51461	1	0.10085	1	0.49506	1	0.108	1	0.0085399	1	0.6752	1	0.40692	1	0.65386	1	0.8668	1
FGFR3	4 (1%)	413	NA	NA	NA	NA	0.57183	1	0.83928	1	0.94965	1	0.79234	1	0.82762	1	0.47938	1	0.82126	1	0.31324	1	NA	NA	NA	NA
PTCH1	7 (2%)	410	NA	NA	NA	NA	0.63284	1	0.054879	1	0.28088	1	0.11946	1	0.87701	1	0.10062	1	0.79639	1	0.21741	1	NA	NA	NA	NA
RBMX	4 (1%)	413	NA	NA	NA	NA	0.57089	1	0.61861	1	0.098489	1	0.5991	1	0.40682	1	0.48381	1	0.2507	1	0.17329	1	NA	NA	NA	NA
ARAP3	3 (1%)	414	NA	NA	NA	NA	0.62496	1	NA	NA	1	1	0.79494	1	0.78407	1	1	1	0.79621	1	1	1	NA	NA	NA	NA
GPR172B	4 (1%)	413	NA	NA	NA	NA	1	1	NA	NA	0.077759	1	1	1	0.52862	1	1	1	0.61109	1	0.4335	1	NA	NA	NA	NA
EGFR	7 (2%)	410	NA	NA	NA	NA	1	1	0.68297	1	0.62284	1	0.37776	1	0.46535	1	0.88764	1	1	1	0.75163	1	NA	NA	NA	NA
IL1RAP	4 (1%)	413	NA	NA	NA	NA	1	1	0.61565	1	0.29434	1	0.073939	1	0.82861	1	0.81406	1	0.56628	1	0.82282	1	NA	NA	NA	NA
BCL6	5 (1%)	412	NA	NA	NA	NA	0.22943	1	0.61594	1	0.72372	1	0.14443	1	1	1	0.80442	1	0.72608	1	0.85469	1	1	1	1	1
NFAT5	6 (1%)	411	NA	NA	NA	NA	0.76788	1	0.87728	1	0.2697	1	0.71809	1	0.29721	1	0.43065	1	0.24255	1	1	1	NA	NA	NA	NA
LARP1	5 (1%)	412	NA	NA	NA	NA	0.85668	1	0.43772	1	0.17862	1	0.71943	1	0.84808	1	0.86407	1	0.61675	1	0.2701	1	NA	NA	NA	NA
KIAA1751	6 (1%)	411	NA	NA	NA	NA	0.67505	1	0.63892	1	0.53201	1	0.053519	1	0.40467	1	0.92987	1	0.49625	1	0.16931	1	0.79208	1	0.16144	1
INSRR	4 (1%)	413	NA	NA	NA	NA	0.57058	1	0.1205	1	0.348	1	0.68458	1	0.40556	1	0.23856	1	0.46017	1	0.24902	1	NA	NA	NA	NA