Clinical Features	Time to Death		AGE		NEOPLASM.DISEASESTAGE		PATHOLOGY.T.STAGE		PATHOLOGY.N.STAGE		PATHOLOGY.M.STAGE		GENDER		KARNOFSKY.PERFORMANCE.SCORE		NUMBERPACKYEARSSMOKED		RACE		ETHNICITY	
	nCNV (%)	nWild-Type	logrank test_P	logrank test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	6 (3%)	192	1.2538e-11	8.59e-09	0.71779	1	0.00168	1	0.0071199	1	0.0444	1	0.1287	1	0.062045	1	NA	NA	NA	NA	0.43048	1	1	1
1q gain	15 (8%)	183	6.7681e-08	4.62e-05	0.93533	1	9.9999e-06	0.00677	9.9999e-06	0.00677	0.1838	1	0.16639	1	0.04192	1	0.24149	1	NA	NA	0.28476	1	1	1
2p gain	37 (19%)	161	0.86924	1	0.37328	1	0.061299	1	0.48422	1	0.19896	1	0.00458	1	0.69001	1	0.88599	1	0.30722	1	0.69451	1	1	1
2q gain	39 (20%)	159	0.82297	1	0.69627	1	0.01595	1	0.47868	1	0.10423	1	0.0068899	1	0.55897	1	0.71855	1	0.30722	1	0.62306	1	1	1
3p gain	58 (29%)	140	0.10656	1	0.79631	1	0.01529	1	0.01751	1	0.8346	1	0.21022	1	0.60716	1	0.020761	1	0.36582	1	0.78883	1	1	1
3q gain	68 (34%)	130	0.21042	1	0.42539	1	0.092899	1	0.097159	1	0.88156	1	0.085309	1	0.41153	1	0.16761	1	0.54907	1	0.29003	1	0.71928	1
4p gain	6 (3%)	192	0.0087625	1	0.010747	1	0.086059	1	0.50503	1	0.46754	1	0.17981	1	0.67314	1	NA	NA	NA	NA	1	1	1	1
4q gain	5 (3%)	193	0.0087625	1	0.033644	1	0.36503	1	0.58487	1	0.14841	1	0.68662	1	1	1	NA	NA	NA	NA	1	1	1	1
5p gain	27 (14%)	171	0.73235	1	0.62964	1	0.32246	1	0.26067	1	0.40808	1	0.42796	1	0.82128	1	0.27508	1	0.69308	1	0.37072	1	0.61109	1
5q gain	27 (14%)	171	0.73235	1	0.97122	1	0.32416	1	0.44122	1	0.76983	1	0.43176	1	0.82128	1	0.27508	1	0.69308	1	0.58205	1	0.36108	1
6p gain	8 (4%)	190	0.60314	1	0.50361	1	0.00289	1	0.00083999	0.531	0.25846	1	0.050899	1	0.69454	1	1	1	NA	NA	1	1	1	1
6q gain	6 (3%)	192	0.85864	1	0.17269	1	0.01485	1	0.0072599	1	0.076519	1	0.01821	1	0.3612	1	1	1	NA	NA	0.72661	1	1	1
7p gain	120 (61%)	78	0.42572	1	0.16644	1	0.00046	0.294	0.01314	1	0.58625	1	0.54776	1	0.11169	1	0.085971	1	0.88468	1	0.76168	1	0.29886	1
7q gain	121 (61%)	77	0.41097	1	0.12773	1	0.00024	0.155	0.0084499	1	0.45785	1	0.63201	1	0.10878	1	0.085971	1	0.88468	1	0.79494	1	0.29318	1
8p gain	12 (6%)	186	0.093122	1	0.96419	1	0.169	1	0.10014	1	0.20772	1	1	1	0.33898	1	NA	NA	NA	NA	0.1184	1	1	1
8q gain	17 (9%)	181	0.093122	1	0.5011	1	0.00194	1	0.00070999	0.449	0.0157	1	0.14127	1	0.046746	1	0.60308	1	NA	NA	0.090459	1	1	1
9p gain	3 (2%)	195	NA	NA	0.47666	1	0.03373	1	0.054549	1	NA	NA	0.64334	1	1	1	NA	NA	NA	NA	0.60391	1	1	1
10p gain	8 (4%)	190	0.7268	1	0.38056	1	0.21512	1	0.41256	1	1	1	0.03651	1	0.69454	1	NA	NA	NA	NA	0.00498	1	1	1
10q gain	8 (4%)	190	0.7268	1	0.38056	1	0.2166	1	0.41085	1	1	1	0.037	1	0.69454	1	NA	NA	NA	NA	0.0045	1	1	1
11p gain	10 (5%)	188	0.60314	1	0.21701	1	0.04517	1	0.03033	1	0.55776	1	0.04734	1	0.16091	1	NA	NA	NA	NA	0.33723	1	1	1
11q gain	9 (5%)	189	0.60314	1	0.094345	1	0.13401	1	0.061509	1	0.72303	1	0.2631	1	0.019893	1	NA	NA	NA	NA	0.3487	1	1	1
12p gain	81 (41%)	117	0.090359	1	0.3277	1	0.15841	1	0.47354	1	0.62283	1	0.20336	1	0.017095	1	0.35582	1	0.54102	1	0.6296	1	0.079566	1
12q gain	81 (41%)	117	0.090359	1	0.3277	1	0.16058	1	0.47596	1	0.6267	1	0.19989	1	0.017095	1	0.35582	1	0.54102	1	0.63119	1	0.079566	1
13q gain	22 (11%)	176	0.87465	1	0.45856	1	0.56839	1	0.55266	1	0.72457	1	0.85548	1	1	1	0.31828	1	NA	NA	0.73374	1	0.28476	1
14q gain	3 (2%)	195	NA	NA	NA	NA	0.055349	1	0.02227	1	NA	NA	0.64293	1	0.20584	1	NA	NA	NA	NA	NA	NA	1	1
15q gain	5 (3%)	193	0.59732	1	0.8914	1	0.18171	1	0.24519	1	NA	NA	0.50338	1	0.15112	1	NA	NA	NA	NA	0.67737	1	1	1
16p gain	106 (54%)	92	0.18039	1	0.15564	1	0.82061	1	0.65873	1	1	1	0.56238	1	0.0050718	1	0.67886	1	0.38254	1	0.03604	1	0.082381	1
16q gain	102 (52%)	96	0.040583	1	0.33385	1	0.47225	1	0.30006	1	0.76848	1	0.15134	1	0.041918	1	0.23343	1	0.79405	1	0.16142	1	0.089581	1
17p gain	120 (61%)	78	0.15928	1	0.011298	1	3e-05	0.0199	0.00058999	0.375	0.19104	1	0.00024	0.155	0.0562	1	0.95365	1	0.83855	1	0.22666	1	0.27745	1
17q gain	135 (68%)	63	0.2625	1	0.051444	1	0.04654	1	0.20489	1	0.36884	1	0.00229	1	0.40612	1	0.75957	1	0.50319	1	0.4157	1	0.26485	1
18p gain	9 (5%)	189	0.20099	1	0.92528	1	0.36804	1	1	1	0.64014	1	0.12124	1	0.28786	1	0.6233	1	NA	NA	0.32045	1	1	1
18q gain	6 (3%)	192	0.62295	1	0.79696	1	0.62114	1	0.63428	1	NA	NA	0.34424	1	0.67314	1	0.09642	1	NA	NA	0.33568	1	1	1
19p gain	4 (2%)	194	0.7792	1	0.050364	1	0.57304	1	0.5272	1	1	1	0.44204	1	0.58209	1	NA	NA	NA	NA	0.094379	1	1	1
19q gain	4 (2%)	194	0.7792	1	0.050364	1	0.5695	1	0.52846	1	1	1	0.44174	1	0.58209	1	NA	NA	NA	NA	0.094829	1	1	1
20p gain	69 (35%)	129	0.89713	1	0.24983	1	0.37668	1	0.40036	1	1	1	0.89637	1	0.62367	1	0.3888	1	0.58751	1	0.68929	1	0.49537	1
20q gain	71 (36%)	127	0.91906	1	0.23221	1	0.21444	1	0.28567	1	0.90243	1	0.83564	1	0.51645	1	0.3888	1	0.58751	1	0.60074	1	0.49179	1
21q gain	12 (6%)	186	0.67704	1	0.13493	1	0.85818	1	1	1	0.63656	1	0.12513	1	0.74955	1	0.93118	1	NA	NA	0.04938	1	0.47777	1
xq gain	67 (34%)	131	0.28651	1	0.71009	1	0.0061299	1	0.01841	1	0.57195	1	0.67867	1	0.070886	1	0.04476	1	0.74624	1	0.31131	1	0.72002	1
1p loss	20 (10%)	178	0.1154	1	0.31326	1	0.084329	1	0.085299	1	0.30837	1	0.76938	1	0.12202	1	0.806	1	NA	NA	0.44833	1	0.59262	1
1q loss	13 (7%)	185	0.60026	1	0.26505	1	0.28801	1	0.60324	1	0.72355	1	0.47265	1	0.20757	1	0.81227	1	NA	NA	0.40072	1	0.53836	1
3p loss	15 (8%)	183	1.1074e-05	0.00739	0.1708	1	5e-05	0.0328	0.00033	0.212	0.88359	1	0.10556	1	0.77011	1	0.3167	1	0.7853	1	0.45126	1	1	1
3q loss	4 (2%)	194	8.0158e-14	5.51e-11	0.12346	1	0.00457	1	0.0089199	1	0.16432	1	0.19914	1	0.58209	1	NA	NA	NA	NA	1	1	1	1
4p loss	19 (10%)	179	0.018806	1	0.0035655	1	9.9999e-06	0.00677	9.9999e-06	0.00677	0.00255	1	0.69524	1	3.2361e-05	0.0213	0.21889	1	NA	NA	0.096229	1	0.56625	1
4q loss	20 (10%)	178	0.025873	1	0.032151	1	4e-05	0.0263	3e-05	0.0199	0.01728	1	0.26379	1	0.0005172	0.33	0.15161	1	NA	NA	0.10423	1	0.59262	1
5p loss	7 (4%)	191	6.9117e-06	0.00469	0.036484	1	0.014	1	0.00266	1	0.0336	1	0.12863	1	0.023773	1	NA	NA	NA	NA	1	1	0.25136	1
5q loss	7 (4%)	191	0.00010394	0.068	0.005716	1	0.02245	1	0.00264	1	0.04596	1	0.12671	1	0.023773	1	NA	NA	NA	NA	1	1	0.25136	1
6p loss	15 (8%)	183	0.14703	1	0.32778	1	0.02363	1	0.04053	1	0.050819	1	0.61148	1	0.14384	1	0.75266	1	NA	NA	0.04381	1	1	1
6q loss	18 (9%)	180	0.69725	1	0.83601	1	0.03577	1	0.00166	1	0.11686	1	0.30323	1	0.014788	1	0.46857	1	0.39191	1	0.02136	1	1	1
8p loss	10 (5%)	188	0.00053558	0.342	0.30292	1	0.02809	1	0.4378	1	0.0067199	1	0.0080599	1	0.16091	1	0.74809	1	NA	NA	0.01902	1	1	1
8q loss	5 (3%)	193	0.00012625	0.0823	0.9968	1	0.14389	1	0.58261	1	NA	NA	0.25149	1	0.15112	1	NA	NA	NA	NA	0.17195	1	1	1
9p loss	25 (13%)	173	0.011458	1	0.63596	1	9.9999e-06	0.00677	9.9999e-06	0.00677	0.058379	1	0.091229	1	0.0037598	1	0.016612	1	0.02833	1	0.03111	1	0.60644	1
9q loss	26 (13%)	172	0.0056575	1	0.56254	1	3e-05	0.0199	9.9999e-06	0.00677	0.04677	1	0.48822	1	0.0051358	1	0.036227	1	0.14785	1	0.063809	1	0.60281	1
10p loss	12 (6%)	186	0.0069076	1	0.99368	1	0.00125	0.785	0.00365	1	0.068469	1	0.03857	1	0.11356	1	0.24149	1	NA	NA	0.82575	1	1	1
10q loss	12 (6%)	186	0.0041013	1	0.37341	1	0.00057999	0.369	0.00088999	0.562	0.02819	1	0.12591	1	0.11356	1	0.075749	1	NA	NA	0.39766	1	1	1
11p loss	12 (6%)	186	1.371e-06	0.000932	0.080161	1	0.0063099	1	0.0063999	1	0.079559	1	0.40584	1	0.33898	1	0.22664	1	NA	NA	0.80668	1	1	1
11q loss	15 (8%)	183	0.0076006	1	0.31934	1	2e-05	0.0133	3e-05	0.0199	0.0357	1	0.19147	1	0.3803	1	0.3167	1	NA	NA	0.48326	1	1	1
13q loss	20 (10%)	178	0.0001046	0.0683	0.014457	1	2e-04	0.129	0.00013	0.0846	0.0059099	1	0.58409	1	8.3354e-05	0.0546	0.46857	1	NA	NA	0.10163	1	1	1
14q loss	36 (18%)	162	0.0031168	1	0.83158	1	0.00249	1	0.00207	1	0.04555	1	0.1346	1	0.0041968	1	0.094274	1	0.21301	1	0.95265	1	1	1
15q loss	21 (11%)	177	0.00018098	0.118	0.036426	1	0.00118	0.742	0.00062999	0.4	0.058009	1	0.32789	1	0.20292	1	0.22664	1	NA	NA	0.40967	1	1	1
16p loss	4 (2%)	194	NA	NA	0.67238	1	0.13251	1	0.093389	1	NA	NA	1	1	0.076374	1	NA	NA	NA	NA	NA	NA	1	1
16q loss	6 (3%)	192	7.4567e-07	0.000509	0.17089	1	0.02202	1	0.095539	1	0.16575	1	0.76173	1	0.3612	1	NA	NA	NA	NA	0.62851	1	1	1
17p loss	9 (5%)	189	6.3396e-11	4.34e-08	0.77089	1	0.00019	0.123	0.00103	0.649	0.00486	1	0.04076	1	0.019893	1	0.74809	1	NA	NA	1	1	1	1
18p loss	32 (16%)	166	0.0013959	0.875	0.18766	1	3e-05	0.0199	9.9999e-06	0.00677	0.059829	1	0.03034	1	0.020811	1	0.48236	1	0.51066	1	0.30589	1	1	1
18q loss	33 (17%)	165	8.3336e-07	0.000568	0.46221	1	2e-05	0.0133	3e-05	0.0199	0.01557	1	0.04111	1	0.092623	1	0.36169	1	0.35031	1	0.25849	1	1	1
19p loss	13 (7%)	185	0.00038538	0.247	0.12493	1	0.0079899	1	0.0079299	1	0.078889	1	0.17511	1	0.52999	1	0.15161	1	0.72615	1	1	1	1	1
19q loss	12 (6%)	186	4.1319e-12	2.83e-09	0.83884	1	0.00019	0.123	0.00032	0.206	0.079329	1	0.059349	1	0.11356	1	0.15161	1	0.79246	1	0.82575	1	1	1
21q loss	32 (16%)	166	0.29462	1	0.50282	1	0.0088199	1	0.00467	1	0.64556	1	0.20999	1	0.057976	1	0.10472	1	0.45596	1	0.4822	1	1	1
22q loss	47 (24%)	151	0.0027743	1	0.23339	1	9.9999e-06	0.00677	9.9999e-06	0.00677	0.02417	1	0.03886	1	0.0015431	0.966	0.49584	1	0.46301	1	0.13593	1	0.40746	1
xq loss	20 (10%)	178	5.9026e-06	0.00401	0.090145	1	0.00067999	0.431	0.00024	0.155	0.02334	1	0.28458	1	0.039807	1	0.32187	1	NA	NA	0.097889	1	1	1