Clinical Features	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_2p23.2	41 (18%)	183	9.9999e-06	0.00232	0.0071199	1	0.04461	1	0.16513	1	0.01633	1	0.8544	1	0.058659	1	0.12056	1
amp_2q32.1	48 (21%)	176	9.9999e-06	0.00232	0.056959	1	0.062859	1	0.14045	1	0.25464	1	0.67418	1	0.082429	1	0.6578	1
amp_3p12.1	64 (29%)	160	9.9999e-06	0.00232	0.00445	0.681	3e-05	0.00603	0.00038	0.0669	0.21201	1	0.0067399	1	0.31549	1	5e-05	0.0098
amp_3q26.31	80 (36%)	144	9.9999e-06	0.00232	0.055969	1	6.9999e-05	0.0133	0.00312	0.487	0.067999	1	0.01445	1	0.33286	1	9.9999e-06	0.00232
amp_7q22.1	135 (60%)	89	9.9999e-06	0.00232	9.9999e-06	0.00232	9.9999e-06	0.00232	9.9999e-06	0.00232	0.11559	1	0.0077899	1	0.02296	1	2e-05	0.0041
amp_17q25.2	160 (71%)	64	9.9999e-06	0.00232	9.9999e-05	0.0185	5.9999e-05	0.0115	2e-05	0.0041	0.22815	1	0.1196	1	0.2155	1	0.02006	1
amp_19p13.2	24 (11%)	200	0.084519	1	0.02798	1	0.0181	1	0.03709	1	0.35958	1	1	1	0.22386	1	0.0094299	1
del_1p36.32	44 (20%)	180	9.9999e-06	0.00232	6.9999e-05	0.0133	9.9999e-06	0.00232	0.055619	1	0.89126	1	0.95091	1	0.46673	1	0.00391	0.602
del_2q37.3	11 (5%)	213	0.0096599	1	0.00183	0.296	0.17306	1	0.01413	1	0.071339	1	0.18564	1	0.02939	1	0.01006	1
del_3p22.1	19 (8%)	205	0.00019	0.034	2e-05	0.0041	9.9999e-06	0.00232	0.00209	0.334	0.085949	1	0.11342	1	0.070669	1	9.9999e-06	0.00232
del_4q34.3	26 (12%)	198	0.00013	0.0237	9.9999e-06	0.00232	9.9999e-06	0.00232	0.0109	1	0.44504	1	0.21398	1	0.93218	1	3e-05	0.00603
del_5p14.2	10 (4%)	214	0.41601	1	0.01085	1	0.12594	1	0.16339	1	0.166	1	0.1911	1	0.25738	1	0.068319	1
del_5q35.2	11 (5%)	213	0.01069	1	3e-05	0.00603	0.00045	0.0783	0.00146	0.239	0.04412	1	0.0017	0.277	0.20806	1	9.9999e-06	0.00232
del_6p12.3	19 (8%)	205	0.00078999	0.132	0.03069	1	0.0062899	0.945	0.42934	1	0.32062	1	0.44846	1	0.12299	1	0.14171	1
del_6q22.31	21 (9%)	203	0.00049	0.0843	0.02112	1	0.00031	0.0549	0.14585	1	0.65543	1	0.42055	1	0.65061	1	0.00225	0.358
del_6q27	24 (11%)	200	0.00016	0.0288	0.00052999	0.0906	6.9999e-05	0.0133	0.064509	1	0.54538	1	0.63648	1	0.63575	1	0.0080699	1
del_9p21.3	33 (15%)	191	9.9999e-06	0.00232	9.9999e-06	0.00232	9.9999e-06	0.00232	2e-05	0.0041	0.0062599	0.945	0.01016	1	0.082209	1	7.9999e-05	0.015
del_10p11.21	13 (6%)	211	0.00447	0.681	0.00136	0.224	5e-05	0.0098	0.12039	1	0.14707	1	0.87222	1	0.45648	1	0.069429	1
del_11q22.3	23 (10%)	201	4e-04	0.07	0.00055999	0.0952	0.00046	0.0796	0.02796	1	0.20286	1	0.23781	1	0.25753	1	0.22941	1
del_11q24.2	23 (10%)	201	0.00293	0.46	5e-05	0.0098	0.00014	0.0253	0.02789	1	0.20327	1	0.21578	1	0.25894	1	0.01545	1
del_14q11.2	44 (20%)	180	9.9999e-06	0.00232	0.03411	1	0.00057999	0.098	0.00134	0.222	0.57505	1	0.4977	1	0.61887	1	0.086809	1
del_15q13.3	29 (13%)	195	5e-05	0.0098	9.9999e-05	0.0185	3e-05	0.00603	0.00184	0.296	0.11001	1	0.14456	1	0.20266	1	0.0032	0.496
del_16q24.1	9 (4%)	215	0.01963	1	9.9999e-06	0.00232	0.01084	1	0.11148	1	0.84202	1	0.15344	1	0.91194	1	0.00227	0.359
del_19p13.3	17 (8%)	207	0.057079	1	0.03435	1	0.02554	1	0.48497	1	0.15699	1	0.57587	1	0.19501	1	0.33022	1
del_19q13.42	16 (7%)	208	0.158	1	0.03327	1	0.0079099	1	0.46454	1	0.19014	1	0.74607	1	0.060769	1	0.054949	1
del_21q22.3	36 (16%)	188	4e-05	0.00788	0.38743	1	0.26659	1	0.8657	1	0.21847	1	0.34031	1	0.31995	1	0.092989	1
del_22q12.2	53 (24%)	171	5e-05	0.0098	9.9999e-06	0.00232	9.9999e-06	0.00232	0.04932	1	0.90435	1	0.93804	1	0.50915	1	9.9999e-06	0.00232
del_xp11.22	21 (9%)	203	8.9999e-05	0.0167	9.9999e-06	0.00232	9.9999e-06	0.00232	0.01227	1	0.1983	1	0.22315	1	0.38956	1	0.02511	1
del_xq28	20 (9%)	204	0.00012	0.022	0.00070999	0.119	0.00024	0.0427	0.26649	1	0.36048	1	0.68525	1	0.46584	1	0.053739	1