Clinical Features	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1p33	7 (4%)	184	0.00055999	0.0571	0.01247	0.848	0.12503	1	0.12994	1	0.0093099	0.689	0.04754	1
amp_1q43	7 (4%)	184	0.00458	0.385	0.01182	0.839	0.37394	1	0.03546	1	0.13841	1	0.01532	1
amp_11q23.3	17 (9%)	174	9.9999e-06	0.00122	6.9999e-05	0.00763	0.3729	1	0.2034	1	0.74652	1	0.18594	1
amp_13q31.3	7 (4%)	184	0.084129	1	0.01193	0.839	0.068249	1	0.03644	1	0.73437	1	0.056199	1
amp_19p13.2	6 (3%)	185	0.00013	0.0139	0.55583	1	0.85787	1	0.62949	1	0.89404	1	1	1
amp_20q11.21	3 (2%)	188	0.0079199	0.603	0.26664	1	NA	NA	NA	NA	NA	NA	NA	NA
amp_21q22.2	14 (7%)	177	9.9999e-06	0.00122	0.00224	0.197	0.00318	0.273	0.03746	1	0.00147	0.137	0.067359	1
del_3p13	9 (5%)	182	0.00014	0.0148	0.29763	1	0.03381	1	0.12727	1	0.01201	0.839	0.01959	1
del_3q26.31	3 (2%)	188	0.0083499	0.626	0.26799	1	0.78557	1	1	1	0.061179	1	0.092509	1
del_5q31.2	18 (9%)	173	9.9999e-06	0.00122	5e-05	0.00555	0.0054499	0.447	0.00063999	0.064	0.00087999	0.0854	0.00144	0.135
del_7p12.1	16 (8%)	175	0.00027	0.0281	0.00063999	0.064	0.00155	0.143	2e-05	0.00228	0.0059899	0.485	0.0066599	0.526
del_7q32.3	23 (12%)	168	9.9999e-06	0.00122	0.00014	0.0148	0.0387	1	2e-05	0.00228	0.00287	0.25	0.00208	0.185
del_7q34	24 (13%)	167	9.9999e-06	0.00122	5e-05	0.00555	0.02169	1	9.9999e-06	0.00122	0.00082999	0.0813	0.00058999	0.0596
del_9q21.32	5 (3%)	186	0.2525	1	0.51551	1	0.17557	1	0.60325	1	0.18368	1	0.1051	1
del_12p13.2	10 (5%)	181	7.9999e-05	0.00864	0.00482	0.4	0.19927	1	0.073829	1	0.067769	1	0.0097199	0.71
del_12q21.33	3 (2%)	188	0.00173	0.157	0.30335	1	0.18729	1	0.58955	1	0.0078299	0.603	0.0066799	0.526
del_16q23.1	9 (5%)	182	0.00179	0.161	0.14929	1	0.33168	1	0.49506	1	0.04562	1	0.063069	1
del_17p13.2	15 (8%)	176	9.9999e-06	0.00122	0.00094999	0.0912	0.01119	0.806	0.00033	0.034	0.087119	1	0.00133	0.126
del_17q11.2	13 (7%)	178	2e-05	0.00228	0.02136	1	0.15516	1	0.0065299	0.522	0.13616	1	0.00365	0.31
del_18p11.21	9 (5%)	182	9.9999e-06	0.00122	0.01834	1	0.38156	1	0.33601	1	0.21111	1	0.03336	1
del_20q13.13	4 (2%)	187	0.02546	1	0.14583	1	0.78585	1	0.58571	1	0.12319	1	0.41298	1