Clinical Features MRNA_CNMF MRNA_CHIERARCHICAL CN_CNMF METHLYATION_CNMF RPPA_CNMF RPPA_CHIERARCHICAL MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL MIRSEQ_CNMF MIRSEQ_CHIERARCHICAL MIRSEQ_MATURE_CNMF MIRSEQ_MATURE_CHIERARCHICAL nCNV (%) nWild-Type Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q amp_1q22 42 (8%) 470 NA NA NA NA 0.00035 0.139 0.00144 0.516 0.24937 1 0.8839 1 0.00143 0.513 0.01458 1 0.82505 1 0.28085 1 0.059209 1 0.36649 1 amp_1q32.1 43 (8%) 469 NA NA NA NA 9.9999e-06 0.0058 9.9999e-06 0.0058 0.16169 1 0.35503 1 9.9999e-06 0.0058 9.9999e-06 0.0058 0.55001 1 9.9999e-06 0.0058 0.00102 0.374 9.9999e-06 0.0058 amp_2p24.3 24 (5%) 488 0.61518 1 0.58367 1 0.00072999 0.275 0.04007 1 0.48876 1 1 1 0.02386 1 0.01352 1 0.49463 1 0.04075 1 0.15782 1 0.086079 1 amp_3q26.33 21 (4%) 491 1 1 0.58281 1 9.9999e-06 0.0058 3e-04 0.121 0.14486 1 0.84935 1 0.00069999 0.265 0.00033 0.132 0.00098999 0.365 0.00202 0.705 0.00032 0.128 0.01105 1 amp_4q12 30 (6%) 482 1 1 0.04259 1 5.9999e-05 0.0258 5.9999e-05 0.0258 0.0086899 1 0.28002 1 2e-05 0.00894 2e-05 0.00894 0.00431 1 0.00275 0.929 3e-05 0.0131 0.00063999 0.243 amp_7p11.2 127 (25%) 385 0.76506 1 0.40633 1 9.9999e-06 0.0058 9.9999e-06 0.0058 5e-05 0.0215 0.0127 1 9.9999e-06 0.0058 9.9999e-06 0.0058 0.00037 0.147 9.9999e-06 0.0058 9.9999e-06 0.0058 9.9999e-06 0.0058 amp_7q31.2 173 (34%) 339 1 1 0.81237 1 9.9999e-06 0.0058 9.9999e-06 0.0058 0.00447 1 0.1849 1 9.9999e-06 0.0058 9.9999e-06 0.0058 0.02955 1 9.9999e-06 0.0058 9.9999e-06 0.0058 9.9999e-06 0.0058 amp_7q32.3 181 (35%) 331 0.69407 1 1 1 9.9999e-06 0.0058 9.9999e-06 0.0058 0.0061899 1 0.1671 1 9.9999e-06 0.0058 9.9999e-06 0.0058 0.081829 1 9.9999e-06 0.0058 9.9999e-06 0.0058 9.9999e-06 0.0058 amp_8q24.13 100 (20%) 412 0.36948 1 0.23682 1 9.9999e-06 0.0058 9.9999e-06 0.0058 0.04168 1 0.48723 1 9.9999e-06 0.0058 9.9999e-06 0.0058 0.058499 1 0.00101 0.372 9.9999e-06 0.0058 0.00011 0.0464 amp_9q34.3 45 (9%) 467 0.50991 1 0.88383 1 0.059939 1 0.092809 1 0.20863 1 0.76065 1 0.058319 1 0.01383 1 0.21243 1 0.1807 1 0.27102 1 0.077689 1 amp_10p15.3 70 (14%) 442 0.52598 1 0.085279 1 9.9999e-06 0.0058 9.9999e-06 0.0058 0.0293 1 0.13436 1 9.9999e-06 0.0058 9.9999e-06 0.0058 0.00081999 0.307 0.0099999 1 9.9999e-06 0.0058 9.9999e-06 0.0058 amp_11q24.1 86 (17%) 426 0.069579 1 0.11917 1 0.32371 1 0.01684 1 0.054279 1 0.02927 1 0.070839 1 0.066119 1 0.26083 1 0.0080699 1 0.077449 1 0.01634 1 amp_12p13.32 71 (14%) 441 0.86408 1 0.097809 1 9.9999e-06 0.0058 9.9999e-06 0.0058 0.11765 1 0.19086 1 0.00016 0.0664 2e-05 0.00894 0.00478 1 0.00119 0.431 0.00048 0.188 0.00014 0.0585 amp_12q14.1 37 (7%) 475 NA NA NA NA 9.9999e-06 0.0058 9.9999e-06 0.0058 0.01557 1 0.73282 1 9.9999e-06 0.0058 9.9999e-06 0.0058 0.00269 0.912 9.9999e-06 0.0058 9.9999e-06 0.0058 9.9999e-06 0.0058 amp_13q34 22 (4%) 490 NA NA NA NA 0.00096999 0.359 0.00093999 0.349 0.1864 1 0.71606 1 0.04356 1 0.0090999 1 0.32447 1 0.03605 1 0.24369 1 0.13758 1 amp_15q26.3 19 (4%) 493 1 1 0.04389 1 4e-05 0.0174 0.00045 0.177 0.22288 1 0.60639 1 0.04247 1 0.0095799 1 0.20592 1 0.1491 1 0.02385 1 0.37587 1 amp_17q25.1 44 (9%) 468 NA NA NA NA 0.054849 1 0.25727 1 0.3319 1 0.43818 1 0.059509 1 0.071559 1 0.17618 1 0.67493 1 0.6737 1 0.18305 1 amp_19p13.3 128 (25%) 384 0.075829 1 0.15013 1 9.9999e-06 0.0058 9.9999e-06 0.0058 0.88431 1 0.57435 1 9.9999e-06 0.0058 9.9999e-06 0.0058 0.00456 1 0.00308 1 9.9999e-06 0.0058 5.9999e-05 0.0258 amp_19p13.2 122 (24%) 390 0.074749 1 0.15086 1 9.9999e-06 0.0058 9.9999e-06 0.0058 0.27517 1 0.20258 1 9.9999e-06 0.0058 9.9999e-06 0.0058 0.0097399 1 0.0050699 1 9.9999e-06 0.0058 9.9999e-06 0.0058 amp_xp11.22 47 (9%) 465 0.64982 1 1 1 9.9999e-06 0.0058 9.9999e-06 0.0058 0.31848 1 0.73234 1 0.0018 0.632 6.9999e-05 0.0297 0.04495 1 0.13348 1 0.051299 1 0.00026 0.105 amp_xp11.22 62 (12%) 450 0.65206 1 1 1 9.9999e-06 0.0058 9.9999e-06 0.0058 0.0268 1 0.38808 1 9.9999e-06 0.0058 9.9999e-06 0.0058 0.00034 0.136 0.00405 1 0.00013 0.0546 2e-05 0.00894 del_1p36.32 206 (40%) 306 0.00055999 0.216 0.00018 0.0743 9.9999e-06 0.0058 9.9999e-06 0.0058 0.00073999 0.277 0.84605 1 9.9999e-06 0.0058 9.9999e-06 0.0058 9.9999e-06 0.0058 9.9999e-06 0.0058 9.9999e-06 0.0058 9.9999e-06 0.0058 del_1p32.3 196 (38%) 316 0.02838 1 0.00019 0.0783 9.9999e-06 0.0058 9.9999e-06 0.0058 0.00055999 0.216 0.61524 1 9.9999e-06 0.0058 9.9999e-06 0.0058 9.9999e-06 0.0058 9.9999e-06 0.0058 9.9999e-06 0.0058 9.9999e-06 0.0058 del_1q43 31 (6%) 481 NA NA NA NA 0.0019 0.665 0.0071699 1 0.10088 1 0.53809 1 0.02731 1 0.01425 1 0.18823 1 0.58565 1 0.04385 1 0.10984 1 del_2q37.3 77 (15%) 435 0.37058 1 0.01276 1 9.9999e-06 0.0058 9.9999e-06 0.0058 0.00466 1 0.02003 1 0.00019 0.0783 0.00012 0.0505 0.04078 1 0.0087199 1 0.02057 1 9.9999e-06 0.0058 del_3p21.31 48 (9%) 464 1 1 0.0066999 1 9.9999e-06 0.0058 0.00357 1 0.0023 0.791 0.26048 1 0.02091 1 0.00442 1 0.0077399 1 0.0042 1 0.0215 1 0.00177 0.623 del_3q29 47 (9%) 465 0.17512 1 0.88315 1 9.9999e-06 0.0058 0.00044 0.174 0.40824 1 0.92147 1 0.00408 1 0.00104 0.381 0.2738 1 0.01402 1 0.0077799 1 0.0053099 1 del_4q34.3 137 (27%) 375 1 1 0.35432 1 0.00056999 0.218 9.9999e-06 0.0058 0.16383 1 0.22638 1 0.060279 1 0.075139 1 0.01309 1 0.00439 1 0.28901 1 0.00072999 0.275 del_5p15.33 50 (10%) 462 1 1 0.067749 1 9.9999e-06 0.0058 2e-05 0.00894 0.86464 1 0.57942 1 0.0050299 1 0.00082999 0.31 0.003 1 0.23437 1 0.01934 1 0.057919 1 del_5q34 64 (12%) 448 0.44691 1 0.23517 1 9.9999e-06 0.0058 9.9999e-06 0.0058 0.16186 1 1 1 0.00024 0.0977 5.9999e-05 0.0258 3e-05 0.0131 0.0107 1 0.00062999 0.24 0.00228 0.787 del_6p25.3 50 (10%) 462 NA NA NA NA 2e-05 0.00894 0.11708 1 0.23571 1 0.9261 1 0.072049 1 0.11344 1 0.46457 1 0.17743 1 0.092729 1 0.01007 1 del_6q22.31 78 (15%) 434 0.61415 1 0.58225 1 9.9999e-06 0.0058 9.9999e-06 0.0058 0.11411 1 0.50662 1 0.00464 1 0.00046 0.181 0.00141 0.508 0.00226 0.782 0.0094799 1 0.00048 0.188 del_6q24.3 82 (16%) 430 0.16638 1 0.27928 1 9.9999e-06 0.0058 9.9999e-06 0.0058 0.099659 1 0.61865 1 0.00146 0.521 0.00013 0.0546 2e-04 0.0816 0.00239 0.817 0.00019 0.0783 0.00029 0.117 del_7p22.3 21 (4%) 491 NA NA NA NA 0.01747 1 0.0059999 1 0.25287 1 0.35238 1 0.35188 1 0.38162 1 0.79569 1 0.10225 1 0.60502 1 0.050999 1 del_8q24.3 28 (5%) 484 NA NA NA NA 9.9999e-06 0.0058 2e-05 0.00894 0.92616 1 0.4596 1 0.00112 0.407 0.00051999 0.202 0.01016 1 0.02655 1 0.10072 1 0.00123 0.444 del_9p23 150 (29%) 362 0.44905 1 0.65676 1 9.9999e-06 0.0058 9.9999e-06 0.0058 0.03889 1 0.00263 0.894 0.01234 1 0.01974 1 0.93441 1 0.03686 1 0.33785 1 0.02729 1 del_9p21.3 176 (34%) 336 0.33489 1 0.064159 1 9.9999e-06 0.0058 9.9999e-06 0.0058 4e-05 0.0174 2e-05 0.00894 9.9999e-06 0.0058 9.9999e-06 0.0058 0.315 1 9.9999e-06 0.0058 0.00055999 0.216 9.9999e-06 0.0058 del_10q26.3 151 (29%) 361 0.083649 1 0.70611 1 9.9999e-06 0.0058 9.9999e-06 0.0058 9.9999e-06 0.0058 0.00028 0.113 9.9999e-06 0.0058 9.9999e-06 0.0058 9.9999e-06 0.0058 9.9999e-06 0.0058 9.9999e-06 0.0058 9.9999e-06 0.0058 del_11p15.5 103 (20%) 409 0.64303 1 0.00050999 0.199 9.9999e-06 0.0058 9.9999e-06 0.0058 0.14811 1 0.63179 1 9.9999e-06 0.0058 9.9999e-06 0.0058 0.0011 0.401 0.00051999 0.202 0.01244 1 0.00249 0.849 del_12p13.1 39 (8%) 473 NA NA NA NA 0.00111 0.404 0.00398 1 0.19265 1 0.95543 1 0.0095799 1 0.02121 1 0.01799 1 0.10888 1 0.01483 1 0.084129 1 del_12q12 68 (13%) 444 1 1 0.58055 1 9.9999e-06 0.0058 9.9999e-06 0.0058 0.64697 1 0.14888 1 0.01163 1 0.0078699 1 0.0083699 1 0.79716 1 0.14068 1 0.47606 1 del_13q14.2 141 (28%) 371 0.18128 1 4e-05 0.0174 9.9999e-06 0.0058 0.00059999 0.229 0.03358 1 0.60834 1 0.00024 0.0977 5.9999e-05 0.0258 0.02091 1 0.02456 1 0.058149 1 0.02863 1 del_13q14.2 143 (28%) 369 0.18056 1 5.9999e-05 0.0258 9.9999e-06 0.0058 4e-04 0.158 0.03251 1 0.71307 1 0.00015 0.0624 3e-05 0.0131 0.01987 1 0.01442 1 0.04352 1 0.01686 1 del_13q34 109 (21%) 403 0.50664 1 0.14998 1 9.9999e-06 0.0058 0.069129 1 0.082979 1 0.75704 1 0.0081799 1 0.00154 0.547 0.071489 1 0.091019 1 0.01877 1 0.077369 1 del_14q24.3 121 (24%) 391 0.30337 1 0.098309 1 0.00237 0.813 0.0361 1 0.00158 0.559 0.03603 1 0.00052999 0.205 8.9999e-05 0.0381 0.00014 0.0585 0.01188 1 0.00283 0.954 0.0021 0.729 del_15q21.3 66 (13%) 446 0.84141 1 0.49306 1 0.95633 1 0.01233 1 0.01779 1 0.005 1 4e-05 0.0174 0.00091999 0.342 0.54209 1 0.78479 1 0.01458 1 0.30346 1 del_18q23 78 (15%) 434 0.31993 1 0.32863 1 0.70305 1 0.0056999 1 0.45898 1 0.075079 1 0.41004 1 0.081139 1 0.2642 1 0.39123 1 0.60691 1 0.54521 1 del_19q13.42 278 (54%) 234 0.03626 1 0.02076 1 9.9999e-06 0.0058 9.9999e-06 0.0058 0.00207 0.72 0.57485 1 9.9999e-06 0.0058 9.9999e-06 0.0058 9.9999e-06 0.0058 9.9999e-06 0.0058 9.9999e-06 0.0058 9.9999e-06 0.0058 del_22q13.31 77 (15%) 435 0.24832 1 0.04279 1 9.9999e-06 0.0058 9.9999e-06 0.0058 0.00019 0.0783 0.01228 1 9.9999e-06 0.0058 9.9999e-06 0.0058 0.061089 1 0.00016 0.0664 0.00153 0.545 2e-05 0.00894 del_xq21.1 78 (15%) 434 0.83898 1 0.26823 1 0.22773 1 0.01356 1 0.052309 1 0.15188 1 0.0082799 1 0.00068999 0.262 0.0058699 1 0.0061799 1 0.00173 0.611 0.0069599 1