This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.
Testing the association between mutation status of 20 genes and 12 molecular subtypes across 172 patients, 10 significant findings detected with P value < 0.05 and Q value < 0.25.
-
TP53 mutation correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
-
STK11 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
-
KEAP1 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nMutated (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
TP53 | 86 (50%) | 86 |
0.0016 (0.33) |
0.0195 (1.00) |
2e-05 (0.00426) |
0.0162 (1.00) |
0.00043 (0.089) |
0.00019 (0.0399) |
1e-05 (0.00216) |
6e-05 (0.0127) |
0.00335 (0.683) |
0.00018 (0.038) |
0.384 (1.00) |
0.848 (1.00) |
STK11 | 20 (12%) | 152 |
0.554 (1.00) |
0.427 (1.00) |
0.521 (1.00) |
0.591 (1.00) |
0.405 (1.00) |
0.249 (1.00) |
0.00033 (0.069) |
1e-05 (0.00216) |
0.635 (1.00) |
0.108 (1.00) |
0.268 (1.00) |
0.636 (1.00) |
KEAP1 | 31 (18%) | 141 |
0.553 (1.00) |
0.426 (1.00) |
0.202 (1.00) |
0.361 (1.00) |
0.0905 (1.00) |
0.164 (1.00) |
0.00034 (0.0707) |
1e-05 (0.00216) |
1 (1.00) |
0.366 (1.00) |
0.686 (1.00) |
0.326 (1.00) |
KRAS | 47 (27%) | 125 |
0.817 (1.00) |
1 (1.00) |
0.0572 (1.00) |
0.432 (1.00) |
0.188 (1.00) |
0.413 (1.00) |
0.639 (1.00) |
0.00882 (1.00) |
0.0148 (1.00) |
0.11 (1.00) |
0.182 (1.00) |
0.0188 (1.00) |
SMARCA4 | 15 (9%) | 157 |
0.118 (1.00) |
0.146 (1.00) |
0.273 (1.00) |
0.0138 (1.00) |
1 (1.00) |
0.432 (1.00) |
0.0414 (1.00) |
0.00646 (1.00) |
0.171 (1.00) |
0.335 (1.00) |
0.175 (1.00) |
0.256 (1.00) |
ARID1A | 11 (6%) | 161 |
0.0353 (1.00) |
0.501 (1.00) |
0.0962 (1.00) |
0.0758 (1.00) |
0.673 (1.00) |
0.846 (1.00) |
0.00585 (1.00) |
0.0498 (1.00) |
0.256 (1.00) |
0.409 (1.00) |
||
NF1 | 22 (13%) | 150 |
0.909 (1.00) |
0.826 (1.00) |
0.00318 (0.652) |
0.0417 (1.00) |
0.886 (1.00) |
0.77 (1.00) |
0.298 (1.00) |
0.585 (1.00) |
0.0737 (1.00) |
0.906 (1.00) |
0.0857 (1.00) |
0.391 (1.00) |
U2AF1 | 6 (3%) | 166 |
1 (1.00) |
0.0608 (1.00) |
0.238 (1.00) |
0.821 (1.00) |
0.538 (1.00) |
0.479 (1.00) |
0.323 (1.00) |
0.236 (1.00) |
0.793 (1.00) |
0.705 (1.00) |
||
EGFR | 23 (13%) | 149 |
0.279 (1.00) |
0.219 (1.00) |
0.159 (1.00) |
0.723 (1.00) |
0.292 (1.00) |
0.686 (1.00) |
0.0167 (1.00) |
0.0181 (1.00) |
0.395 (1.00) |
0.115 (1.00) |
0.0995 (1.00) |
0.00644 (1.00) |
SETD2 | 15 (9%) | 157 |
0.383 (1.00) |
0.345 (1.00) |
0.418 (1.00) |
0.0801 (1.00) |
0.65 (1.00) |
0.547 (1.00) |
0.252 (1.00) |
0.692 (1.00) |
0.283 (1.00) |
0.0922 (1.00) |
||
CDKN2A | 8 (5%) | 164 |
0.898 (1.00) |
0.89 (1.00) |
0.768 (1.00) |
0.865 (1.00) |
0.471 (1.00) |
0.454 (1.00) |
1 (1.00) |
0.342 (1.00) |
0.457 (1.00) |
0.0783 (1.00) |
||
MET | 11 (6%) | 161 |
0.16 (1.00) |
0.0349 (1.00) |
0.663 (1.00) |
0.309 (1.00) |
0.696 (1.00) |
0.052 (1.00) |
0.538 (1.00) |
0.0759 (1.00) |
0.712 (1.00) |
0.477 (1.00) |
||
ERBB2 | 8 (5%) | 164 |
0.282 (1.00) |
0.814 (1.00) |
0.884 (1.00) |
0.779 (1.00) |
0.193 (1.00) |
0.432 (1.00) |
0.713 (1.00) |
0.00771 (1.00) |
1 (1.00) |
1 (1.00) |
||
CHRND | 9 (5%) | 163 |
0.824 (1.00) |
0.168 (1.00) |
0.428 (1.00) |
0.865 (1.00) |
0.201 (1.00) |
0.169 (1.00) |
0.06 (1.00) |
0.382 (1.00) |
0.116 (1.00) |
0.512 (1.00) |
||
BRAF | 16 (9%) | 156 |
0.248 (1.00) |
0.242 (1.00) |
0.837 (1.00) |
0.466 (1.00) |
0.739 (1.00) |
0.306 (1.00) |
0.802 (1.00) |
0.763 (1.00) |
0.211 (1.00) |
0.586 (1.00) |
0.7 (1.00) |
0.0928 (1.00) |
GEN1 | 4 (2%) | 168 |
0.675 (1.00) |
0.55 (1.00) |
1 (1.00) |
1 (1.00) |
0.607 (1.00) |
0.0952 (1.00) |
1 (1.00) |
1 (1.00) |
0.322 (1.00) |
0.14 (1.00) |
||
STX2 | 4 (2%) | 168 |
1 (1.00) |
0.624 (1.00) |
0.641 (1.00) |
1 (1.00) |
0.523 (1.00) |
0.3 (1.00) |
0.307 (1.00) |
0.654 (1.00) |
1 (1.00) |
0.465 (1.00) |
||
MGA | 15 (9%) | 157 |
0.639 (1.00) |
0.146 (1.00) |
0.232 (1.00) |
1 (1.00) |
0.31 (1.00) |
0.601 (1.00) |
0.14 (1.00) |
0.432 (1.00) |
0.263 (1.00) |
0.536 (1.00) |
||
GALC | 5 (3%) | 167 |
0.514 (1.00) |
0.677 (1.00) |
1 (1.00) |
0.822 (1.00) |
0.493 (1.00) |
0.837 (1.00) |
0.197 (1.00) |
0.373 (1.00) |
0.819 (1.00) |
0.761 (1.00) |
||
CTNNB1 | 9 (5%) | 163 |
0.601 (1.00) |
0.312 (1.00) |
0.385 (1.00) |
0.188 (1.00) |
0.217 (1.00) |
0.299 (1.00) |
1 (1.00) |
0.776 (1.00) |
0.296 (1.00) |
0.225 (1.00) |
P value = 0.0016 (Fisher's exact test), Q value = 0.33
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 5 | 9 | 12 | 6 |
TP53 MUTATED | 1 | 6 | 2 | 6 |
TP53 WILD-TYPE | 4 | 3 | 10 | 0 |
P value = 0.0195 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 11 | 7 |
TP53 MUTATED | 3 | 6 | 6 |
TP53 WILD-TYPE | 11 | 5 | 1 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 72 | 33 |
TP53 MUTATED | 47 | 22 | 17 |
TP53 WILD-TYPE | 20 | 50 | 16 |
P value = 0.0162 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 25 | 29 | 33 |
TP53 MUTATED | 6 | 12 | 18 | 22 |
TP53 WILD-TYPE | 17 | 13 | 11 | 11 |
P value = 0.00043 (Fisher's exact test), Q value = 0.089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 23 | 39 |
TP53 MUTATED | 37 | 5 | 28 |
TP53 WILD-TYPE | 36 | 18 | 11 |
P value = 0.00019 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 27 | 27 |
TP53 MUTATED | 43 | 6 | 21 |
TP53 WILD-TYPE | 38 | 21 | 6 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
TP53 MUTATED | 40 | 6 | 11 | 22 | 6 |
TP53 WILD-TYPE | 18 | 31 | 18 | 12 | 7 |
P value = 6e-05 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
TP53 MUTATED | 10 | 4 | 22 | 21 | 3 | 7 | 8 | 1 | 9 |
TP53 WILD-TYPE | 16 | 16 | 6 | 6 | 11 | 8 | 12 | 3 | 8 |
P value = 0.00335 (Fisher's exact test), Q value = 0.68
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 80 | 29 |
TP53 MUTATED | 19 | 48 | 17 |
TP53 WILD-TYPE | 40 | 32 | 12 |
P value = 0.00018 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 17 | 44 | 44 | 32 | 13 |
TP53 MUTATED | 6 | 3 | 27 | 23 | 23 | 2 |
TP53 WILD-TYPE | 12 | 14 | 17 | 21 | 9 | 11 |
P value = 0.384 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 35 | 24 |
TP53 MUTATED | 24 | 21 | 10 |
TP53 WILD-TYPE | 22 | 14 | 14 |
P value = 0.848 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 52 | 11 |
TP53 MUTATED | 23 | 27 | 5 |
TP53 WILD-TYPE | 19 | 25 | 6 |
P value = 0.554 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 5 | 9 | 12 | 6 |
STK11 MUTATED | 0 | 0 | 2 | 1 |
STK11 WILD-TYPE | 5 | 9 | 10 | 5 |
P value = 0.427 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 11 | 7 |
STK11 MUTATED | 2 | 0 | 1 |
STK11 WILD-TYPE | 12 | 11 | 6 |
P value = 0.521 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 72 | 33 |
STK11 MUTATED | 6 | 11 | 3 |
STK11 WILD-TYPE | 61 | 61 | 30 |
P value = 0.591 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 25 | 29 | 33 |
STK11 MUTATED | 3 | 3 | 1 | 3 |
STK11 WILD-TYPE | 20 | 22 | 28 | 30 |
P value = 0.405 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 23 | 39 |
STK11 MUTATED | 6 | 4 | 4 |
STK11 WILD-TYPE | 67 | 19 | 35 |
P value = 0.249 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 27 | 27 |
STK11 MUTATED | 6 | 5 | 3 |
STK11 WILD-TYPE | 75 | 22 | 24 |
P value = 0.00033 (Fisher's exact test), Q value = 0.069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
STK11 MUTATED | 0 | 7 | 7 | 5 | 0 |
STK11 WILD-TYPE | 58 | 30 | 22 | 29 | 13 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
STK11 MUTATED | 1 | 0 | 0 | 0 | 8 | 2 | 8 | 0 | 0 |
STK11 WILD-TYPE | 25 | 20 | 28 | 27 | 6 | 13 | 12 | 4 | 17 |
P value = 0.635 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 80 | 29 |
STK11 MUTATED | 7 | 7 | 4 |
STK11 WILD-TYPE | 52 | 73 | 25 |
P value = 0.108 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 17 | 44 | 44 | 32 | 13 |
STK11 MUTATED | 5 | 1 | 6 | 2 | 4 | 0 |
STK11 WILD-TYPE | 13 | 16 | 38 | 42 | 28 | 13 |
P value = 0.268 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 35 | 24 |
STK11 MUTATED | 6 | 1 | 3 |
STK11 WILD-TYPE | 40 | 34 | 21 |
P value = 0.636 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 52 | 11 |
STK11 MUTATED | 5 | 5 | 0 |
STK11 WILD-TYPE | 37 | 47 | 11 |
P value = 0.553 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 5 | 9 | 12 | 6 |
KEAP1 MUTATED | 0 | 0 | 2 | 1 |
KEAP1 WILD-TYPE | 5 | 9 | 10 | 5 |
P value = 0.426 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 11 | 7 |
KEAP1 MUTATED | 2 | 0 | 1 |
KEAP1 WILD-TYPE | 12 | 11 | 6 |
P value = 0.202 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 72 | 33 |
KEAP1 MUTATED | 8 | 15 | 8 |
KEAP1 WILD-TYPE | 59 | 57 | 25 |
P value = 0.361 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 25 | 29 | 33 |
KEAP1 MUTATED | 2 | 6 | 3 | 7 |
KEAP1 WILD-TYPE | 21 | 19 | 26 | 26 |
P value = 0.0905 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 23 | 39 |
KEAP1 MUTATED | 9 | 7 | 9 |
KEAP1 WILD-TYPE | 64 | 16 | 30 |
P value = 0.164 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 27 | 27 |
KEAP1 MUTATED | 11 | 7 | 7 |
KEAP1 WILD-TYPE | 70 | 20 | 20 |
P value = 0.00034 (Fisher's exact test), Q value = 0.071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
KEAP1 MUTATED | 3 | 7 | 13 | 7 | 1 |
KEAP1 WILD-TYPE | 55 | 30 | 16 | 27 | 12 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
KEAP1 MUTATED | 1 | 0 | 2 | 6 | 7 | 2 | 12 | 0 | 1 |
KEAP1 WILD-TYPE | 25 | 20 | 26 | 21 | 7 | 13 | 8 | 4 | 16 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 80 | 29 |
KEAP1 MUTATED | 10 | 13 | 5 |
KEAP1 WILD-TYPE | 49 | 67 | 24 |
P value = 0.366 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 17 | 44 | 44 | 32 | 13 |
KEAP1 MUTATED | 5 | 2 | 9 | 4 | 7 | 1 |
KEAP1 WILD-TYPE | 13 | 15 | 35 | 40 | 25 | 12 |
P value = 0.686 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 35 | 24 |
KEAP1 MUTATED | 10 | 6 | 3 |
KEAP1 WILD-TYPE | 36 | 29 | 21 |
P value = 0.326 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 52 | 11 |
KEAP1 MUTATED | 8 | 11 | 0 |
KEAP1 WILD-TYPE | 34 | 41 | 11 |
P value = 0.817 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 5 | 9 | 12 | 6 |
KRAS MUTATED | 2 | 3 | 3 | 1 |
KRAS WILD-TYPE | 3 | 6 | 9 | 5 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 11 | 7 |
KRAS MUTATED | 4 | 3 | 2 |
KRAS WILD-TYPE | 10 | 8 | 5 |
P value = 0.0572 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 72 | 33 |
KRAS MUTATED | 13 | 20 | 14 |
KRAS WILD-TYPE | 54 | 52 | 19 |
P value = 0.432 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 25 | 29 | 33 |
KRAS MUTATED | 4 | 8 | 9 | 6 |
KRAS WILD-TYPE | 19 | 17 | 20 | 27 |
P value = 0.188 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 23 | 39 |
KRAS MUTATED | 15 | 9 | 9 |
KRAS WILD-TYPE | 58 | 14 | 30 |
P value = 0.413 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 27 | 27 |
KRAS MUTATED | 17 | 9 | 7 |
KRAS WILD-TYPE | 64 | 18 | 20 |
P value = 0.639 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
KRAS MUTATED | 14 | 12 | 10 | 8 | 2 |
KRAS WILD-TYPE | 44 | 25 | 19 | 26 | 11 |
P value = 0.00882 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
KRAS MUTATED | 9 | 4 | 5 | 2 | 7 | 7 | 6 | 3 | 3 |
KRAS WILD-TYPE | 17 | 16 | 23 | 25 | 7 | 8 | 14 | 1 | 14 |
P value = 0.0148 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 80 | 29 |
KRAS MUTATED | 24 | 16 | 5 |
KRAS WILD-TYPE | 35 | 64 | 24 |
P value = 0.11 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 17 | 44 | 44 | 32 | 13 |
KRAS MUTATED | 6 | 8 | 7 | 15 | 7 | 2 |
KRAS WILD-TYPE | 12 | 9 | 37 | 29 | 25 | 11 |
P value = 0.182 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 35 | 24 |
KRAS MUTATED | 16 | 6 | 5 |
KRAS WILD-TYPE | 30 | 29 | 19 |
P value = 0.0188 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 52 | 11 |
KRAS MUTATED | 16 | 11 | 0 |
KRAS WILD-TYPE | 26 | 41 | 11 |
P value = 0.118 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 5 | 9 | 12 | 6 |
SMARCA4 MUTATED | 0 | 1 | 0 | 2 |
SMARCA4 WILD-TYPE | 5 | 8 | 12 | 4 |
P value = 0.146 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 11 | 7 |
SMARCA4 MUTATED | 1 | 0 | 2 |
SMARCA4 WILD-TYPE | 13 | 11 | 5 |
P value = 0.273 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 72 | 33 |
SMARCA4 MUTATED | 6 | 4 | 5 |
SMARCA4 WILD-TYPE | 61 | 68 | 28 |
P value = 0.0138 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 25 | 29 | 33 |
SMARCA4 MUTATED | 1 | 6 | 0 | 5 |
SMARCA4 WILD-TYPE | 22 | 19 | 29 | 28 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 23 | 39 |
SMARCA4 MUTATED | 7 | 2 | 4 |
SMARCA4 WILD-TYPE | 66 | 21 | 35 |
P value = 0.432 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 27 | 27 |
SMARCA4 MUTATED | 6 | 3 | 4 |
SMARCA4 WILD-TYPE | 75 | 24 | 23 |
P value = 0.0414 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
SMARCA4 MUTATED | 3 | 1 | 6 | 5 | 0 |
SMARCA4 WILD-TYPE | 55 | 36 | 23 | 29 | 13 |
P value = 0.00646 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
SMARCA4 MUTATED | 2 | 0 | 1 | 4 | 0 | 1 | 7 | 0 | 0 |
SMARCA4 WILD-TYPE | 24 | 20 | 27 | 23 | 14 | 14 | 13 | 4 | 17 |
P value = 0.171 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 80 | 29 |
SMARCA4 MUTATED | 2 | 10 | 3 |
SMARCA4 WILD-TYPE | 57 | 70 | 26 |
P value = 0.335 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 17 | 44 | 44 | 32 | 13 |
SMARCA4 MUTATED | 1 | 0 | 6 | 2 | 5 | 1 |
SMARCA4 WILD-TYPE | 17 | 17 | 38 | 42 | 27 | 12 |
P value = 0.175 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 35 | 24 |
SMARCA4 MUTATED | 2 | 5 | 4 |
SMARCA4 WILD-TYPE | 44 | 30 | 20 |
P value = 0.256 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 52 | 11 |
SMARCA4 MUTATED | 2 | 8 | 1 |
SMARCA4 WILD-TYPE | 40 | 44 | 10 |
P value = 0.0353 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 72 | 33 |
ARID1A MUTATED | 6 | 1 | 4 |
ARID1A WILD-TYPE | 61 | 71 | 29 |
P value = 0.501 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 25 | 29 | 33 |
ARID1A MUTATED | 1 | 3 | 3 | 1 |
ARID1A WILD-TYPE | 22 | 22 | 26 | 32 |
P value = 0.0962 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 23 | 39 |
ARID1A MUTATED | 3 | 0 | 5 |
ARID1A WILD-TYPE | 70 | 23 | 34 |
P value = 0.0758 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 27 | 27 |
ARID1A MUTATED | 4 | 0 | 4 |
ARID1A WILD-TYPE | 77 | 27 | 23 |
P value = 0.673 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
ARID1A MUTATED | 3 | 2 | 1 | 4 | 1 |
ARID1A WILD-TYPE | 55 | 35 | 28 | 30 | 12 |
P value = 0.846 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
ARID1A MUTATED | 1 | 2 | 1 | 3 | 0 | 2 | 1 | 0 | 1 |
ARID1A WILD-TYPE | 25 | 18 | 27 | 24 | 14 | 13 | 19 | 4 | 16 |
P value = 0.00585 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 80 | 29 |
ARID1A MUTATED | 0 | 10 | 1 |
ARID1A WILD-TYPE | 59 | 70 | 28 |
P value = 0.0498 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 17 | 44 | 44 | 32 | 13 |
ARID1A MUTATED | 0 | 2 | 2 | 1 | 6 | 0 |
ARID1A WILD-TYPE | 18 | 15 | 42 | 43 | 26 | 13 |
P value = 0.256 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 35 | 24 |
ARID1A MUTATED | 2 | 5 | 1 |
ARID1A WILD-TYPE | 44 | 30 | 23 |
P value = 0.409 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 52 | 11 |
ARID1A MUTATED | 2 | 6 | 0 |
ARID1A WILD-TYPE | 40 | 46 | 11 |
P value = 0.909 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 5 | 9 | 12 | 6 |
NF1 MUTATED | 0 | 2 | 2 | 1 |
NF1 WILD-TYPE | 5 | 7 | 10 | 5 |
P value = 0.826 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 11 | 7 |
NF1 MUTATED | 3 | 1 | 1 |
NF1 WILD-TYPE | 11 | 10 | 6 |
P value = 0.00318 (Fisher's exact test), Q value = 0.65
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 72 | 33 |
NF1 MUTATED | 16 | 4 | 2 |
NF1 WILD-TYPE | 51 | 68 | 31 |
P value = 0.0417 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 25 | 29 | 33 |
NF1 MUTATED | 0 | 6 | 7 | 5 |
NF1 WILD-TYPE | 23 | 19 | 22 | 28 |
P value = 0.886 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 23 | 39 |
NF1 MUTATED | 11 | 3 | 4 |
NF1 WILD-TYPE | 62 | 20 | 35 |
P value = 0.77 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 27 | 27 |
NF1 MUTATED | 10 | 3 | 5 |
NF1 WILD-TYPE | 71 | 24 | 22 |
P value = 0.298 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
NF1 MUTATED | 11 | 2 | 2 | 4 | 2 |
NF1 WILD-TYPE | 47 | 35 | 27 | 30 | 11 |
P value = 0.585 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
NF1 MUTATED | 4 | 1 | 4 | 5 | 0 | 1 | 2 | 0 | 4 |
NF1 WILD-TYPE | 22 | 19 | 24 | 22 | 14 | 14 | 18 | 4 | 13 |
P value = 0.0737 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 80 | 29 |
NF1 MUTATED | 4 | 11 | 7 |
NF1 WILD-TYPE | 55 | 69 | 22 |
P value = 0.906 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 17 | 44 | 44 | 32 | 13 |
NF1 MUTATED | 2 | 1 | 6 | 6 | 6 | 1 |
NF1 WILD-TYPE | 16 | 16 | 38 | 38 | 26 | 12 |
P value = 0.0857 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 35 | 24 |
NF1 MUTATED | 4 | 5 | 7 |
NF1 WILD-TYPE | 42 | 30 | 17 |
P value = 0.391 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 52 | 11 |
NF1 MUTATED | 4 | 10 | 2 |
NF1 WILD-TYPE | 38 | 42 | 9 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 72 | 33 |
U2AF1 MUTATED | 2 | 3 | 1 |
U2AF1 WILD-TYPE | 65 | 69 | 32 |
P value = 0.0608 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 25 | 29 | 33 |
U2AF1 MUTATED | 0 | 0 | 0 | 3 |
U2AF1 WILD-TYPE | 23 | 25 | 29 | 30 |
P value = 0.238 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 23 | 39 |
U2AF1 MUTATED | 3 | 2 | 0 |
U2AF1 WILD-TYPE | 70 | 21 | 39 |
P value = 0.821 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 27 | 27 |
U2AF1 MUTATED | 4 | 1 | 0 |
U2AF1 WILD-TYPE | 77 | 26 | 27 |
P value = 0.538 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
U2AF1 MUTATED | 3 | 1 | 1 | 0 | 1 |
U2AF1 WILD-TYPE | 55 | 36 | 28 | 34 | 12 |
P value = 0.479 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
U2AF1 MUTATED | 3 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 1 |
U2AF1 WILD-TYPE | 23 | 19 | 28 | 26 | 14 | 15 | 20 | 4 | 16 |
P value = 0.323 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 80 | 29 |
U2AF1 MUTATED | 4 | 2 | 0 |
U2AF1 WILD-TYPE | 55 | 78 | 29 |
P value = 0.236 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 17 | 44 | 44 | 32 | 13 |
U2AF1 MUTATED | 0 | 1 | 0 | 4 | 1 | 0 |
U2AF1 WILD-TYPE | 18 | 16 | 44 | 40 | 31 | 13 |
P value = 0.793 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 35 | 24 |
U2AF1 MUTATED | 2 | 1 | 0 |
U2AF1 WILD-TYPE | 44 | 34 | 24 |
P value = 0.705 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 52 | 11 |
U2AF1 MUTATED | 2 | 1 | 0 |
U2AF1 WILD-TYPE | 40 | 51 | 11 |
P value = 0.279 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 5 | 9 | 12 | 6 |
EGFR MUTATED | 0 | 0 | 3 | 0 |
EGFR WILD-TYPE | 5 | 9 | 9 | 6 |
P value = 0.219 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 11 | 7 |
EGFR MUTATED | 3 | 0 | 0 |
EGFR WILD-TYPE | 11 | 11 | 7 |
P value = 0.159 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 72 | 33 |
EGFR MUTATED | 13 | 8 | 2 |
EGFR WILD-TYPE | 54 | 64 | 31 |
P value = 0.723 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 25 | 29 | 33 |
EGFR MUTATED | 4 | 2 | 4 | 3 |
EGFR WILD-TYPE | 19 | 23 | 25 | 30 |
P value = 0.292 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 23 | 39 |
EGFR MUTATED | 13 | 2 | 3 |
EGFR WILD-TYPE | 60 | 21 | 36 |
P value = 0.686 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 27 | 27 |
EGFR MUTATED | 12 | 4 | 2 |
EGFR WILD-TYPE | 69 | 23 | 25 |
P value = 0.0167 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
EGFR MUTATED | 10 | 8 | 0 | 2 | 3 |
EGFR WILD-TYPE | 48 | 29 | 29 | 32 | 10 |
P value = 0.0181 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
EGFR MUTATED | 2 | 7 | 3 | 6 | 1 | 0 | 0 | 0 | 4 |
EGFR WILD-TYPE | 24 | 13 | 25 | 21 | 13 | 15 | 20 | 4 | 13 |
P value = 0.395 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 80 | 29 |
EGFR MUTATED | 6 | 11 | 6 |
EGFR WILD-TYPE | 53 | 69 | 23 |
P value = 0.115 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 17 | 44 | 44 | 32 | 13 |
EGFR MUTATED | 2 | 4 | 2 | 7 | 4 | 4 |
EGFR WILD-TYPE | 16 | 13 | 42 | 37 | 28 | 9 |
P value = 0.0995 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 35 | 24 |
EGFR MUTATED | 8 | 1 | 4 |
EGFR WILD-TYPE | 38 | 34 | 20 |
P value = 0.00644 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 52 | 11 |
EGFR MUTATED | 7 | 2 | 4 |
EGFR WILD-TYPE | 35 | 50 | 7 |
P value = 0.383 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 72 | 33 |
SETD2 MUTATED | 4 | 9 | 2 |
SETD2 WILD-TYPE | 63 | 63 | 31 |
P value = 0.345 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 25 | 29 | 33 |
SETD2 MUTATED | 3 | 1 | 6 | 4 |
SETD2 WILD-TYPE | 20 | 24 | 23 | 29 |
P value = 0.418 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 23 | 39 |
SETD2 MUTATED | 4 | 3 | 2 |
SETD2 WILD-TYPE | 69 | 20 | 37 |
P value = 0.0801 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 27 | 27 |
SETD2 MUTATED | 5 | 4 | 0 |
SETD2 WILD-TYPE | 76 | 23 | 27 |
P value = 0.65 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
SETD2 MUTATED | 6 | 5 | 1 | 2 | 1 |
SETD2 WILD-TYPE | 52 | 32 | 28 | 32 | 12 |
P value = 0.547 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
SETD2 MUTATED | 4 | 4 | 3 | 1 | 1 | 0 | 1 | 0 | 1 |
SETD2 WILD-TYPE | 22 | 16 | 25 | 26 | 13 | 15 | 19 | 4 | 16 |
P value = 0.252 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 80 | 29 |
SETD2 MUTATED | 8 | 5 | 1 |
SETD2 WILD-TYPE | 51 | 75 | 28 |
P value = 0.692 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 17 | 44 | 44 | 32 | 13 |
SETD2 MUTATED | 1 | 0 | 4 | 5 | 2 | 2 |
SETD2 WILD-TYPE | 17 | 17 | 40 | 39 | 30 | 11 |
P value = 0.283 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 35 | 24 |
SETD2 MUTATED | 8 | 2 | 3 |
SETD2 WILD-TYPE | 38 | 33 | 21 |
P value = 0.0922 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 52 | 11 |
SETD2 MUTATED | 8 | 3 | 2 |
SETD2 WILD-TYPE | 34 | 49 | 9 |
P value = 0.898 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 72 | 33 |
CDKN2A MUTATED | 3 | 3 | 2 |
CDKN2A WILD-TYPE | 64 | 69 | 31 |
P value = 0.89 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 25 | 29 | 33 |
CDKN2A MUTATED | 1 | 0 | 1 | 1 |
CDKN2A WILD-TYPE | 22 | 25 | 28 | 32 |
P value = 0.768 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 23 | 39 |
CDKN2A MUTATED | 3 | 1 | 3 |
CDKN2A WILD-TYPE | 70 | 22 | 36 |
P value = 0.865 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 27 | 27 |
CDKN2A MUTATED | 4 | 1 | 2 |
CDKN2A WILD-TYPE | 77 | 26 | 25 |
P value = 0.471 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
CDKN2A MUTATED | 3 | 0 | 2 | 2 | 1 |
CDKN2A WILD-TYPE | 55 | 37 | 27 | 32 | 12 |
P value = 0.454 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
CDKN2A MUTATED | 2 | 0 | 2 | 1 | 0 | 1 | 0 | 1 | 1 |
CDKN2A WILD-TYPE | 24 | 20 | 26 | 26 | 14 | 14 | 20 | 3 | 16 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 80 | 29 |
CDKN2A MUTATED | 3 | 4 | 1 |
CDKN2A WILD-TYPE | 56 | 76 | 28 |
P value = 0.342 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 17 | 44 | 44 | 32 | 13 |
CDKN2A MUTATED | 0 | 0 | 1 | 5 | 2 | 0 |
CDKN2A WILD-TYPE | 18 | 17 | 43 | 39 | 30 | 13 |
P value = 0.457 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 35 | 24 |
CDKN2A MUTATED | 2 | 0 | 1 |
CDKN2A WILD-TYPE | 44 | 35 | 23 |
P value = 0.0783 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 52 | 11 |
CDKN2A MUTATED | 2 | 0 | 1 |
CDKN2A WILD-TYPE | 40 | 52 | 10 |
P value = 0.16 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 72 | 33 |
MET MUTATED | 4 | 7 | 0 |
MET WILD-TYPE | 63 | 65 | 33 |
P value = 0.0349 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 25 | 29 | 33 |
MET MUTATED | 0 | 0 | 5 | 3 |
MET WILD-TYPE | 23 | 25 | 24 | 30 |
P value = 0.663 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 23 | 39 |
MET MUTATED | 7 | 1 | 2 |
MET WILD-TYPE | 66 | 22 | 37 |
P value = 0.309 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 27 | 27 |
MET MUTATED | 8 | 2 | 0 |
MET WILD-TYPE | 73 | 25 | 27 |
P value = 0.696 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
MET MUTATED | 5 | 2 | 3 | 1 | 0 |
MET WILD-TYPE | 53 | 35 | 26 | 33 | 13 |
P value = 0.052 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
MET MUTATED | 0 | 1 | 5 | 0 | 1 | 0 | 2 | 1 | 1 |
MET WILD-TYPE | 26 | 19 | 23 | 27 | 13 | 15 | 18 | 3 | 16 |
P value = 0.538 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 80 | 29 |
MET MUTATED | 4 | 4 | 3 |
MET WILD-TYPE | 55 | 76 | 26 |
P value = 0.0759 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 17 | 44 | 44 | 32 | 13 |
MET MUTATED | 0 | 0 | 6 | 5 | 0 | 0 |
MET WILD-TYPE | 18 | 17 | 38 | 39 | 32 | 13 |
P value = 0.712 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 35 | 24 |
MET MUTATED | 5 | 2 | 1 |
MET WILD-TYPE | 41 | 33 | 23 |
P value = 0.477 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 52 | 11 |
MET MUTATED | 5 | 3 | 0 |
MET WILD-TYPE | 37 | 49 | 11 |
P value = 0.282 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 72 | 33 |
ERBB2 MUTATED | 5 | 3 | 0 |
ERBB2 WILD-TYPE | 62 | 69 | 33 |
P value = 0.814 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 25 | 29 | 33 |
ERBB2 MUTATED | 2 | 1 | 1 | 1 |
ERBB2 WILD-TYPE | 21 | 24 | 28 | 32 |
P value = 0.884 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 23 | 39 |
ERBB2 MUTATED | 4 | 1 | 3 |
ERBB2 WILD-TYPE | 69 | 22 | 36 |
P value = 0.779 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 27 | 27 |
ERBB2 MUTATED | 6 | 1 | 1 |
ERBB2 WILD-TYPE | 75 | 26 | 26 |
P value = 0.193 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
ERBB2 MUTATED | 5 | 2 | 0 | 0 | 1 |
ERBB2 WILD-TYPE | 53 | 35 | 29 | 34 | 12 |
P value = 0.432 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
ERBB2 MUTATED | 4 | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 0 |
ERBB2 WILD-TYPE | 22 | 19 | 27 | 26 | 13 | 15 | 20 | 4 | 17 |
P value = 0.713 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 80 | 29 |
ERBB2 MUTATED | 4 | 3 | 1 |
ERBB2 WILD-TYPE | 55 | 77 | 28 |
P value = 0.00771 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 17 | 44 | 44 | 32 | 13 |
ERBB2 MUTATED | 4 | 2 | 1 | 1 | 0 | 0 |
ERBB2 WILD-TYPE | 14 | 15 | 43 | 43 | 32 | 13 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 35 | 24 |
ERBB2 MUTATED | 2 | 1 | 1 |
ERBB2 WILD-TYPE | 44 | 34 | 23 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 52 | 11 |
ERBB2 MUTATED | 2 | 2 | 0 |
ERBB2 WILD-TYPE | 40 | 50 | 11 |
P value = 0.824 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 72 | 33 |
CHRND MUTATED | 4 | 3 | 2 |
CHRND WILD-TYPE | 63 | 69 | 31 |
P value = 0.168 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 25 | 29 | 33 |
CHRND MUTATED | 0 | 1 | 4 | 1 |
CHRND WILD-TYPE | 23 | 24 | 25 | 32 |
P value = 0.428 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 23 | 39 |
CHRND MUTATED | 4 | 0 | 3 |
CHRND WILD-TYPE | 69 | 23 | 36 |
P value = 0.865 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 27 | 27 |
CHRND MUTATED | 4 | 1 | 2 |
CHRND WILD-TYPE | 77 | 26 | 25 |
P value = 0.201 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
CHRND MUTATED | 4 | 0 | 1 | 4 | 0 |
CHRND WILD-TYPE | 54 | 37 | 28 | 30 | 13 |
P value = 0.169 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
CHRND MUTATED | 1 | 0 | 1 | 0 | 1 | 3 | 1 | 0 | 2 |
CHRND WILD-TYPE | 25 | 20 | 27 | 27 | 13 | 12 | 19 | 4 | 15 |
P value = 0.06 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 80 | 29 |
CHRND MUTATED | 1 | 8 | 0 |
CHRND WILD-TYPE | 58 | 72 | 29 |
P value = 0.382 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 17 | 44 | 44 | 32 | 13 |
CHRND MUTATED | 0 | 1 | 3 | 1 | 4 | 0 |
CHRND WILD-TYPE | 18 | 16 | 41 | 43 | 28 | 13 |
P value = 0.116 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 35 | 24 |
CHRND MUTATED | 1 | 4 | 0 |
CHRND WILD-TYPE | 45 | 31 | 24 |
P value = 0.512 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 52 | 11 |
CHRND MUTATED | 1 | 4 | 0 |
CHRND WILD-TYPE | 41 | 48 | 11 |
P value = 0.248 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 5 | 9 | 12 | 6 |
BRAF MUTATED | 0 | 3 | 1 | 0 |
BRAF WILD-TYPE | 5 | 6 | 11 | 6 |
P value = 0.242 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 14 | 11 | 7 |
BRAF MUTATED | 1 | 3 | 0 |
BRAF WILD-TYPE | 13 | 8 | 7 |
P value = 0.837 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 72 | 33 |
BRAF MUTATED | 6 | 6 | 4 |
BRAF WILD-TYPE | 61 | 66 | 29 |
P value = 0.466 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 25 | 29 | 33 |
BRAF MUTATED | 4 | 1 | 4 | 3 |
BRAF WILD-TYPE | 19 | 24 | 25 | 30 |
P value = 0.739 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 23 | 39 |
BRAF MUTATED | 5 | 1 | 4 |
BRAF WILD-TYPE | 68 | 22 | 35 |
P value = 0.306 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 27 | 27 |
BRAF MUTATED | 8 | 0 | 2 |
BRAF WILD-TYPE | 73 | 27 | 25 |
P value = 0.802 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
BRAF MUTATED | 7 | 4 | 1 | 3 | 1 |
BRAF WILD-TYPE | 51 | 33 | 28 | 31 | 12 |
P value = 0.763 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
BRAF MUTATED | 2 | 2 | 5 | 3 | 1 | 1 | 0 | 0 | 2 |
BRAF WILD-TYPE | 24 | 18 | 23 | 24 | 13 | 14 | 20 | 4 | 15 |
P value = 0.211 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 80 | 29 |
BRAF MUTATED | 6 | 5 | 5 |
BRAF WILD-TYPE | 53 | 75 | 24 |
P value = 0.586 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 17 | 44 | 44 | 32 | 13 |
BRAF MUTATED | 2 | 0 | 6 | 4 | 2 | 2 |
BRAF WILD-TYPE | 16 | 17 | 38 | 40 | 30 | 11 |
P value = 0.7 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 35 | 24 |
BRAF MUTATED | 5 | 2 | 3 |
BRAF WILD-TYPE | 41 | 33 | 21 |
P value = 0.0928 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 52 | 11 |
BRAF MUTATED | 6 | 2 | 2 |
BRAF WILD-TYPE | 36 | 50 | 9 |
P value = 0.675 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 72 | 33 |
GEN1 MUTATED | 2 | 1 | 1 |
GEN1 WILD-TYPE | 65 | 71 | 32 |
P value = 0.55 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 25 | 29 | 33 |
GEN1 MUTATED | 0 | 0 | 2 | 1 |
GEN1 WILD-TYPE | 23 | 25 | 27 | 32 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 23 | 39 |
GEN1 MUTATED | 2 | 0 | 1 |
GEN1 WILD-TYPE | 71 | 23 | 38 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 27 | 27 |
GEN1 MUTATED | 2 | 1 | 0 |
GEN1 WILD-TYPE | 79 | 26 | 27 |
P value = 0.607 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
GEN1 MUTATED | 3 | 0 | 0 | 1 | 0 |
GEN1 WILD-TYPE | 55 | 37 | 29 | 33 | 13 |
P value = 0.0952 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
GEN1 MUTATED | 3 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
GEN1 WILD-TYPE | 23 | 20 | 28 | 27 | 13 | 15 | 20 | 4 | 17 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 80 | 29 |
GEN1 MUTATED | 1 | 2 | 0 |
GEN1 WILD-TYPE | 58 | 78 | 29 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 17 | 44 | 44 | 32 | 13 |
GEN1 MUTATED | 0 | 0 | 1 | 1 | 1 | 0 |
GEN1 WILD-TYPE | 18 | 17 | 43 | 43 | 31 | 13 |
P value = 0.322 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 35 | 24 |
GEN1 MUTATED | 3 | 0 | 0 |
GEN1 WILD-TYPE | 43 | 35 | 24 |
P value = 0.14 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 52 | 11 |
GEN1 MUTATED | 3 | 0 | 0 |
GEN1 WILD-TYPE | 39 | 52 | 11 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 72 | 33 |
STX2 MUTATED | 1 | 2 | 1 |
STX2 WILD-TYPE | 66 | 70 | 32 |
P value = 0.624 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 25 | 29 | 33 |
STX2 MUTATED | 0 | 0 | 1 | 2 |
STX2 WILD-TYPE | 23 | 25 | 28 | 31 |
P value = 0.641 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 23 | 39 |
STX2 MUTATED | 2 | 0 | 2 |
STX2 WILD-TYPE | 71 | 23 | 37 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 27 | 27 |
STX2 MUTATED | 2 | 1 | 1 |
STX2 WILD-TYPE | 79 | 26 | 26 |
P value = 0.523 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
STX2 MUTATED | 2 | 0 | 0 | 2 | 0 |
STX2 WILD-TYPE | 56 | 37 | 29 | 32 | 13 |
P value = 0.3 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
STX2 MUTATED | 0 | 0 | 2 | 0 | 1 | 1 | 0 | 0 | 0 |
STX2 WILD-TYPE | 26 | 20 | 26 | 27 | 13 | 14 | 20 | 4 | 17 |
P value = 0.307 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 80 | 29 |
STX2 MUTATED | 0 | 3 | 1 |
STX2 WILD-TYPE | 59 | 77 | 28 |
P value = 0.654 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 17 | 44 | 44 | 32 | 13 |
STX2 MUTATED | 0 | 0 | 3 | 1 | 0 | 0 |
STX2 WILD-TYPE | 18 | 17 | 41 | 43 | 32 | 13 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 35 | 24 |
STX2 MUTATED | 1 | 1 | 1 |
STX2 WILD-TYPE | 45 | 34 | 23 |
P value = 0.465 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 52 | 11 |
STX2 MUTATED | 1 | 1 | 1 |
STX2 WILD-TYPE | 41 | 51 | 10 |
P value = 0.639 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 72 | 33 |
MGA MUTATED | 6 | 5 | 4 |
MGA WILD-TYPE | 61 | 67 | 29 |
P value = 0.146 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 25 | 29 | 33 |
MGA MUTATED | 1 | 4 | 5 | 1 |
MGA WILD-TYPE | 22 | 21 | 24 | 32 |
P value = 0.232 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 23 | 39 |
MGA MUTATED | 7 | 0 | 5 |
MGA WILD-TYPE | 66 | 23 | 34 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 27 | 27 |
MGA MUTATED | 8 | 2 | 2 |
MGA WILD-TYPE | 73 | 25 | 25 |
P value = 0.31 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
MGA MUTATED | 8 | 1 | 2 | 4 | 0 |
MGA WILD-TYPE | 50 | 36 | 27 | 30 | 13 |
P value = 0.601 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
MGA MUTATED | 5 | 1 | 2 | 4 | 1 | 1 | 1 | 0 | 0 |
MGA WILD-TYPE | 21 | 19 | 26 | 23 | 13 | 14 | 19 | 4 | 17 |
P value = 0.14 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 80 | 29 |
MGA MUTATED | 2 | 10 | 2 |
MGA WILD-TYPE | 57 | 70 | 27 |
P value = 0.432 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 17 | 44 | 44 | 32 | 13 |
MGA MUTATED | 0 | 2 | 4 | 3 | 5 | 0 |
MGA WILD-TYPE | 18 | 15 | 40 | 41 | 27 | 13 |
P value = 0.263 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 35 | 24 |
MGA MUTATED | 4 | 6 | 1 |
MGA WILD-TYPE | 42 | 29 | 23 |
P value = 0.536 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 52 | 11 |
MGA MUTATED | 4 | 7 | 0 |
MGA WILD-TYPE | 38 | 45 | 11 |
P value = 0.514 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 72 | 33 |
GALC MUTATED | 3 | 1 | 1 |
GALC WILD-TYPE | 64 | 71 | 32 |
P value = 0.677 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 25 | 29 | 33 |
GALC MUTATED | 0 | 2 | 1 | 2 |
GALC WILD-TYPE | 23 | 23 | 28 | 31 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 23 | 39 |
GALC MUTATED | 3 | 0 | 1 |
GALC WILD-TYPE | 70 | 23 | 38 |
P value = 0.822 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 27 | 27 |
GALC MUTATED | 3 | 0 | 1 |
GALC WILD-TYPE | 78 | 27 | 26 |
P value = 0.493 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
GALC MUTATED | 3 | 0 | 0 | 2 | 0 |
GALC WILD-TYPE | 55 | 37 | 29 | 32 | 13 |
P value = 0.837 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
GALC MUTATED | 2 | 0 | 1 | 1 | 0 | 1 | 0 | 0 | 0 |
GALC WILD-TYPE | 24 | 20 | 27 | 26 | 14 | 14 | 20 | 4 | 17 |
P value = 0.197 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 80 | 29 |
GALC MUTATED | 0 | 4 | 1 |
GALC WILD-TYPE | 59 | 76 | 28 |
P value = 0.373 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 17 | 44 | 44 | 32 | 13 |
GALC MUTATED | 1 | 1 | 1 | 0 | 2 | 0 |
GALC WILD-TYPE | 17 | 16 | 43 | 44 | 30 | 13 |
P value = 0.819 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 35 | 24 |
GALC MUTATED | 1 | 2 | 1 |
GALC WILD-TYPE | 45 | 33 | 23 |
P value = 0.761 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 52 | 11 |
GALC MUTATED | 1 | 3 | 0 |
GALC WILD-TYPE | 41 | 49 | 11 |
P value = 0.601 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 72 | 33 |
CTNNB1 MUTATED | 2 | 5 | 2 |
CTNNB1 WILD-TYPE | 65 | 67 | 31 |
P value = 0.312 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 25 | 29 | 33 |
CTNNB1 MUTATED | 2 | 0 | 3 | 1 |
CTNNB1 WILD-TYPE | 21 | 25 | 26 | 32 |
P value = 0.385 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 23 | 39 |
CTNNB1 MUTATED | 2 | 1 | 3 |
CTNNB1 WILD-TYPE | 71 | 22 | 36 |
P value = 0.188 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 27 | 27 |
CTNNB1 MUTATED | 2 | 3 | 1 |
CTNNB1 WILD-TYPE | 79 | 24 | 26 |
P value = 0.217 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 58 | 37 | 29 | 34 | 13 |
CTNNB1 MUTATED | 1 | 3 | 1 | 4 | 0 |
CTNNB1 WILD-TYPE | 57 | 34 | 28 | 30 | 13 |
P value = 0.299 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 26 | 20 | 28 | 27 | 14 | 15 | 20 | 4 | 17 |
CTNNB1 MUTATED | 1 | 1 | 0 | 2 | 3 | 0 | 1 | 0 | 1 |
CTNNB1 WILD-TYPE | 25 | 19 | 28 | 25 | 11 | 15 | 19 | 4 | 16 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 80 | 29 |
CTNNB1 MUTATED | 3 | 5 | 1 |
CTNNB1 WILD-TYPE | 56 | 75 | 28 |
P value = 0.776 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 18 | 17 | 44 | 44 | 32 | 13 |
CTNNB1 MUTATED | 2 | 0 | 3 | 2 | 2 | 0 |
CTNNB1 WILD-TYPE | 16 | 17 | 41 | 42 | 30 | 13 |
P value = 0.296 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 46 | 35 | 24 |
CTNNB1 MUTATED | 4 | 1 | 0 |
CTNNB1 WILD-TYPE | 42 | 34 | 24 |
P value = 0.225 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 52 | 11 |
CTNNB1 MUTATED | 4 | 1 | 0 |
CTNNB1 WILD-TYPE | 38 | 51 | 11 |
-
Mutation data file = transformed.cor.cli.txt
-
Molecular subtypes file = LUAD-TP.transferedmergedcluster.txt
-
Number of patients = 172
-
Number of significantly mutated genes = 20
-
Number of Molecular subtypes = 12
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.