name	nmut	n_coding	n_flank	n_coding_nonsilent	fracflank	callscheme	callscheme_name	N_tot	nsil_tot	nnon_tot	rate_sil	rate_non
TCGA-05-4244-01A-01D-1105-08	588	234	354	188	6.020408e-01	2	all capture (no interval list)	65505363	45	183	6.869667e-07	2.793664e-06
TCGA-05-4249-01A-01D-1105-08	871	382	489	310	5.614237e-01	2	all capture (no interval list)	65505363	72	302	1.099147e-06	4.610310e-06
TCGA-05-4250-01A-01D-1105-08	947	417	530	320	5.596621e-01	2	all capture (no interval list)	65505363	96	312	1.465529e-06	4.762969e-06
TCGA-05-4382-01A-01D-1265-08	3859	1763	2096	1388	5.431459e-01	2	all capture (no interval list)	65505363	369	1378	5.633127e-06	2.103645e-05
TCGA-05-4384-01A-01D-1753-08	372	168	204	130	5.483871e-01	2	all capture (no interval list)	65505363	38	129	5.801052e-07	1.969304e-06
TCGA-05-4389-01A-01D-1265-08	658	317	341	232	5.182371e-01	2	all capture (no interval list)	65505363	85	229	1.297604e-06	3.495897e-06
TCGA-05-4390-01A-02D-1753-08	1469	674	795	532	5.411845e-01	2	all capture (no interval list)	65505363	141	522	2.152496e-06	7.968813e-06
TCGA-05-4395-01A-01D-1265-08	809	315	494	230	6.106304e-01	2	all capture (no interval list)	65505363	81	227	1.236540e-06	3.465365e-06
TCGA-05-4396-01A-21D-1855-08	19081	13899	5182	9210	2.715791e-01	1	exome+100bp flanks	34834024	4657	9120	1.336911e-04	2.618130e-04
TCGA-05-4397-01A-01D-1265-08	2273	938	1335	748	5.873295e-01	2	all capture (no interval list)	65505363	186	735	2.839462e-06	1.122046e-05
TCGA-05-4398-01A-01D-1265-08	2214	960	1254	730	5.663957e-01	2	all capture (no interval list)	65505363	225	714	3.434833e-06	1.089987e-05
TCGA-05-4402-01A-01D-1265-08	378	194	184	151	4.867725e-01	2	all capture (no interval list)	65505363	43	150	6.564348e-07	2.289889e-06
TCGA-05-4403-01A-01D-1265-08	431	175	256	130	5.939675e-01	2	all capture (no interval list)	65505363	44	127	6.717007e-07	1.938773e-06
TCGA-05-4405-01A-21D-1855-08	1078	505	573	384	5.315399e-01	2	all capture (no interval list)	65505363	119	375	1.816645e-06	5.724722e-06
TCGA-05-4410-01A-21D-1855-08	2904	1415	1489	1084	5.127410e-01	2	all capture (no interval list)	65505363	328	1071	5.007224e-06	1.634981e-05
TCGA-05-4415-01A-22D-1855-08	601	255	346	192	5.757072e-01	2	all capture (no interval list)	65505363	62	191	9.464874e-07	2.915792e-06
TCGA-05-4417-01A-22D-1855-08	1104	542	562	402	5.090580e-01	2	all capture (no interval list)	65505363	139	396	2.121964e-06	6.045307e-06
TCGA-05-4418-01A-01D-1265-08	697	326	371	249	5.322812e-01	2	all capture (no interval list)	65505363	73	246	1.114413e-06	3.755418e-06
TCGA-05-4420-01A-01D-1265-08	918	363	555	274	6.045752e-01	2	all capture (no interval list)	65505363	87	271	1.328136e-06	4.137066e-06
TCGA-05-4422-01A-01D-1265-08	191	68	123	49	6.439791e-01	2	all capture (no interval list)	65505363	19	48	2.900526e-07	7.327644e-07
TCGA-05-4424-01A-22D-1855-08	1992	943	1049	738	5.266064e-01	2	all capture (no interval list)	65505363	204	730	3.114249e-06	1.114413e-05
TCGA-05-4425-01A-01D-1753-08	109	47	62	33	5.688073e-01	2	all capture (no interval list)	65505363	14	33	2.137230e-07	5.037755e-07
TCGA-05-4426-01A-01D-1265-08	162	80	82	60	5.061728e-01	2	all capture (no interval list)	65505363	19	59	2.900526e-07	9.006896e-07
TCGA-05-4427-01A-21D-1855-08	2862	1332	1530	1053	5.345912e-01	2	all capture (no interval list)	65505363	276	1034	4.213395e-06	1.578497e-05
TCGA-05-4430-01A-02D-1265-08	799	378	421	295	5.269086e-01	2	all capture (no interval list)	65505363	83	290	1.267072e-06	4.427118e-06
TCGA-05-4432-01A-01D-1265-08	1882	843	1039	636	5.520723e-01	2	all capture (no interval list)	65505363	204	625	3.114249e-06	9.541204e-06
TCGA-05-4433-01A-22D-1855-08	134	61	73	46	5.447761e-01	2	all capture (no interval list)	65505363	15	46	2.289889e-07	7.022326e-07
TCGA-05-4434-01A-01D-1265-08	135	64	71	47	5.259259e-01	2	all capture (no interval list)	65505363	17	46	2.595207e-07	7.022326e-07
TCGA-05-5420-01A-01D-1625-08	216	118	98	91	4.537037e-01	2	all capture (no interval list)	65505363	27	91	4.121800e-07	1.389199e-06
TCGA-05-5423-01A-01D-1625-08	370	178	192	142	5.189189e-01	2	all capture (no interval list)	65505363	36	137	5.495733e-07	2.091432e-06
TCGA-05-5425-01A-02D-1625-08	100	43	57	38	5.700000e-01	2	all capture (no interval list)	65505363	5	37	7.632963e-08	5.648392e-07
TCGA-05-5428-01A-01D-1625-08	1021	445	576	338	5.641528e-01	2	all capture (no interval list)	65505363	105	334	1.602922e-06	5.098819e-06
TCGA-05-5429-01A-01D-1625-08	100	48	52	37	5.200000e-01	2	all capture (no interval list)	65505363	11	37	1.679252e-07	5.648392e-07
TCGA-05-5715-01A-01D-1625-08	332	138	194	103	5.843373e-01	2	all capture (no interval list)	65505363	35	103	5.343074e-07	1.572390e-06
TCGA-17-Z000-01A-01W-0746-08	550	147	403	115	7.327273e-01	2	all capture (no interval list)	65505363	31	115	4.732437e-07	1.755581e-06
TCGA-17-Z001-01A-01W-0746-08	812	245	567	185	6.982759e-01	2	all capture (no interval list)	65505363	59	177	9.006896e-07	2.702069e-06
TCGA-17-Z003-01A-01W-0746-08	852	310	542	238	6.361502e-01	2	all capture (no interval list)	65505363	72	231	1.099147e-06	3.526429e-06
TCGA-17-Z004-01A-01W-0746-08	120	29	91	19	7.583333e-01	2	all capture (no interval list)	65505363	10	18	1.526593e-07	2.747867e-07
TCGA-17-Z005-01A-01W-0746-08	493	116	377	78	7.647059e-01	2	all capture (no interval list)	65505363	37	78	5.648392e-07	1.190742e-06
TCGA-17-Z007-01A-01W-0746-08	586	84	502	61	8.566553e-01	2	all capture (no interval list)	65505363	23	60	3.511163e-07	9.159555e-07
TCGA-17-Z008-01A-01W-0746-08	1013	366	647	281	6.386969e-01	2	all capture (no interval list)	65505363	83	269	1.267072e-06	4.106534e-06
TCGA-17-Z009-01A-01W-0746-08	241	63	178	52	7.385892e-01	2	all capture (no interval list)	65505363	11	52	1.679252e-07	7.938281e-07
TCGA-17-Z010-01A-01W-0746-08	951	330	621	245	6.529968e-01	2	all capture (no interval list)	65505363	81	237	1.236540e-06	3.618024e-06
TCGA-17-Z011-01A-01W-0746-08	438	128	310	97	7.077626e-01	2	all capture (no interval list)	65505363	29	92	4.427118e-07	1.404465e-06
TCGA-17-Z012-01A-01W-0746-08	611	515	96	366	1.571195e-01	1	exome+100bp flanks	34834024	149	365	4.277427e-06	1.047826e-05
TCGA-17-Z013-01A-01W-0746-08	359	73	286	57	7.966574e-01	2	all capture (no interval list)	65505363	15	57	2.289889e-07	8.701578e-07
TCGA-17-Z014-01A-01W-0746-08	1436	429	1007	323	7.012535e-01	2	all capture (no interval list)	65505363	105	314	1.602922e-06	4.793501e-06
TCGA-17-Z015-01A-01W-0746-08	2270	585	1685	467	7.422907e-01	2	all capture (no interval list)	65505363	112	456	1.709784e-06	6.961262e-06
TCGA-17-Z016-01A-01W-0746-08	3599	351	3248	278	9.024729e-01	3	all genome (WGS)	34834024	72	274	2.066945e-06	7.865873e-06
TCGA-17-Z017-01A-01W-0746-08	902	241	661	194	7.328160e-01	2	all capture (no interval list)	65505363	46	189	7.022326e-07	2.885260e-06
TCGA-17-Z018-01A-01W-0746-08	902	280	622	219	6.895787e-01	2	all capture (no interval list)	65505363	60	218	9.159555e-07	3.327972e-06
TCGA-17-Z020-01A-01W-0746-08	617	162	455	125	7.374392e-01	2	all capture (no interval list)	65505363	37	124	5.648392e-07	1.892975e-06
TCGA-17-Z021-01A-01W-0746-08	973	230	743	168	7.636177e-01	2	all capture (no interval list)	65505363	62	162	9.464874e-07	2.473080e-06
TCGA-17-Z022-01A-01W-0746-08	9132	1384	7748	1048	8.484450e-01	2	all capture (no interval list)	65505363	325	1029	4.961426e-06	1.570864e-05
TCGA-17-Z023-01A-01W-0746-08	1389	451	938	364	6.753060e-01	2	all capture (no interval list)	65505363	87	356	1.328136e-06	5.434670e-06
TCGA-17-Z025-01A-01W-0746-08	1674	280	1394	217	8.327360e-01	2	all capture (no interval list)	65505363	63	215	9.617533e-07	3.282174e-06
TCGA-17-Z026-01A-01W-0746-08	3177	1220	1957	923	6.159899e-01	2	all capture (no interval list)	65505363	293	910	4.472916e-06	1.389199e-05
TCGA-17-Z027-01A-01W-0746-08	216	100	116	77	5.370370e-01	2	all capture (no interval list)	65505363	23	77	3.511163e-07	1.175476e-06
TCGA-17-Z028-01A-01W-0746-08	1806	586	1220	459	6.755260e-01	2	all capture (no interval list)	65505363	124	445	1.892975e-06	6.793337e-06
TCGA-17-Z030-01A-01W-0746-08	1891	688	1203	538	6.361713e-01	2	all capture (no interval list)	65505363	150	529	2.289889e-06	8.075675e-06
TCGA-17-Z031-01A-01W-0746-08	11213	2576	8637	2019	7.702667e-01	2	all capture (no interval list)	65505363	544	1980	8.304664e-06	3.022653e-05
TCGA-17-Z032-01A-01W-0746-08	2222	147	2075	104	9.338434e-01	3	all genome (WGS)	34834024	42	103	1.205718e-06	2.956879e-06
TCGA-17-Z033-01A-01W-0746-08	556	200	356	148	6.402878e-01	2	all capture (no interval list)	65505363	51	145	7.785622e-07	2.213559e-06
TCGA-17-Z035-01A-01W-0746-08	202	62	140	44	6.930693e-01	2	all capture (no interval list)	65505363	17	44	2.595207e-07	6.717007e-07
TCGA-17-Z036-01A-01W-0746-08	406	85	321	68	7.906404e-01	2	all capture (no interval list)	65505363	17	66	2.595207e-07	1.007551e-06
TCGA-17-Z037-01A-01W-0746-08	439	170	269	127	6.127563e-01	2	all capture (no interval list)	65505363	41	123	6.259030e-07	1.877709e-06
TCGA-17-Z038-01A-01W-0746-08	192	2	190	1	9.895833e-01	2	all capture (no interval list)	65505363	1	1	1.526593e-08	1.526593e-08
TCGA-17-Z039-01A-01W-0746-08	117	1	116	1	9.914530e-01	2	all capture (no interval list)	65505363	0	1	0	1.526593e-08
TCGA-17-Z040-01A-01W-0746-08	979	115	864	89	8.825332e-01	2	all capture (no interval list)	65505363	26	88	3.969141e-07	1.343401e-06
TCGA-17-Z041-01A-01W-0746-08	1296	73	1223	54	9.436728e-01	3	all genome (WGS)	34834024	18	53	5.167362e-07	1.521501e-06
TCGA-17-Z042-01A-01W-0746-08	1389	546	843	416	6.069114e-01	2	all capture (no interval list)	65505363	125	405	1.908241e-06	6.182700e-06
TCGA-17-Z043-01A-01W-0746-08	816	236	580	176	7.107843e-01	2	all capture (no interval list)	65505363	58	173	8.854237e-07	2.641005e-06
TCGA-17-Z044-01A-01W-0746-08	681	140	541	99	7.944200e-01	2	all capture (no interval list)	65505363	41	96	6.259030e-07	1.465529e-06
TCGA-17-Z045-01A-01W-0746-08	2014	765	1249	591	6.201589e-01	2	all capture (no interval list)	65505363	170	581	2.595207e-06	8.869503e-06
TCGA-17-Z046-01A-01W-0746-08	1553	546	1007	426	6.484224e-01	2	all capture (no interval list)	65505363	119	417	1.816645e-06	6.365891e-06
TCGA-17-Z047-01A-01W-0747-08	98	36	62	26	6.326531e-01	2	all capture (no interval list)	65505363	10	26	1.526593e-07	3.969141e-07
TCGA-17-Z048-01A-01W-0746-08	151	48	103	35	6.821192e-01	2	all capture (no interval list)	65505363	12	34	1.831911e-07	5.190415e-07
TCGA-17-Z049-01A-01W-0746-08	1570	546	1024	426	6.522293e-01	2	all capture (no interval list)	65505363	118	421	1.801379e-06	6.426955e-06
TCGA-17-Z050-01A-01W-0747-08	512	215	297	160	5.800781e-01	2	all capture (no interval list)	65505363	55	156	8.396259e-07	2.381484e-06
TCGA-17-Z051-01A-01W-0747-08	534	154	380	120	7.116105e-01	2	all capture (no interval list)	65505363	34	117	5.190415e-07	1.786113e-06
TCGA-17-Z052-01A-01W-0747-08	367	184	183	142	4.986376e-01	2	all capture (no interval list)	65505363	42	140	6.411689e-07	2.137230e-06
TCGA-17-Z053-01A-01W-0747-08	822	309	513	229	6.240876e-01	2	all capture (no interval list)	65505363	79	226	1.206008e-06	3.450099e-06
TCGA-17-Z054-01A-01W-0747-08	50	13	37	11	7.400000e-01	2	all capture (no interval list)	65505363	2	10	3.053185e-08	1.526593e-07
TCGA-17-Z055-01A-01W-0747-08	2046	959	1087	755	5.312805e-01	2	all capture (no interval list)	65505363	198	745	3.022653e-06	1.137311e-05
TCGA-17-Z056-01A-01W-0747-08	1195	608	587	488	4.912134e-01	2	all capture (no interval list)	65505363	119	481	1.816645e-06	7.342910e-06
TCGA-17-Z057-01A-01W-0747-08	1080	461	619	352	5.731481e-01	2	all capture (no interval list)	65505363	108	350	1.648720e-06	5.343074e-06
TCGA-17-Z058-01A-01W-0747-08	385	92	293	72	7.610390e-01	2	all capture (no interval list)	65505363	20	71	3.053185e-07	1.083881e-06
TCGA-17-Z059-01A-01W-0747-08	429	177	252	139	5.874126e-01	2	all capture (no interval list)	65505363	38	136	5.801052e-07	2.076166e-06
TCGA-17-Z060-01A-01W-0747-08	644	241	403	185	6.257764e-01	2	all capture (no interval list)	65505363	55	174	8.396259e-07	2.656271e-06
TCGA-17-Z061-01A-01W-0747-08	538	200	338	145	6.282528e-01	2	all capture (no interval list)	65505363	55	144	8.396259e-07	2.198293e-06
TCGA-17-Z062-01A-01W-0747-08	1193	557	636	442	5.331098e-01	2	all capture (no interval list)	65505363	114	438	1.740316e-06	6.686475e-06
TCGA-35-3615-01A-01D-1040-01	249	119	130	95	5.220884e-01	2	all capture (no interval list)	65505363	24	93	3.663822e-07	1.419731e-06
TCGA-35-3615-01A-01W-0928-08	318	134	184	105	5.786164e-01	2	all capture (no interval list)	65505363	28	101	4.274459e-07	1.541858e-06
TCGA-35-4122-01A-01D-1105-08	875	403	472	307	5.394286e-01	2	all capture (no interval list)	65505363	95	304	1.450263e-06	4.640841e-06
TCGA-35-4123-01A-01D-1105-08	876	363	513	260	5.856164e-01	2	all capture (no interval list)	65505363	100	257	1.526593e-06	3.923343e-06
TCGA-35-5375-01A-01D-1625-08	1083	483	600	378	5.540166e-01	2	all capture (no interval list)	65505363	102	372	1.557124e-06	5.678924e-06
TCGA-38-4625-01A-01D-1553-08	1675	678	997	530	5.952239e-01	2	all capture (no interval list)	65505363	144	523	2.198293e-06	7.984079e-06
TCGA-38-4626-01A-01D-1553-08	792	403	389	307	4.911616e-01	2	all capture (no interval list)	65505363	95	296	1.450263e-06	4.518714e-06
TCGA-38-4627-01A-01D-1553-08	114	47	67	39	5.877193e-01	2	all capture (no interval list)	65505363	8	39	1.221274e-07	5.953711e-07
TCGA-38-4628-01A-01D-1265-08	358	166	192	132	5.363128e-01	2	all capture (no interval list)	65505363	34	132	5.190415e-07	2.015102e-06
TCGA-38-4629-01A-02D-1265-08	792	331	461	261	5.820707e-01	2	all capture (no interval list)	65505363	70	255	1.068615e-06	3.892811e-06
TCGA-38-4630-01A-01D-1265-08	352	155	197	117	5.596591e-01	2	all capture (no interval list)	65505363	38	115	5.801052e-07	1.755581e-06
TCGA-38-4631-01A-01D-1753-08	2040	900	1140	696	5.588235e-01	2	all capture (no interval list)	65505363	202	687	3.083717e-06	1.048769e-05
TCGA-38-4632-01A-01D-1753-08	1355	622	733	499	5.409594e-01	2	all capture (no interval list)	65505363	119	491	1.816645e-06	7.495569e-06
TCGA-38-6178-01A-11D-1753-08	200	103	97	72	4.850000e-01	2	all capture (no interval list)	65505363	31	72	4.732437e-07	1.099147e-06
TCGA-44-2655-01A-01D-1553-08	533	222	311	166	5.834897e-01	2	all capture (no interval list)	65505363	56	162	8.548918e-07	2.473080e-06
TCGA-44-2655-01A-01W-0928-08	529	236	293	174	5.538752e-01	2	all capture (no interval list)	65505363	62	170	9.464874e-07	2.595207e-06
TCGA-44-2656-01A-02D-0969-08	2229	905	1324	701	5.939883e-01	2	all capture (no interval list)	65505363	202	693	3.083717e-06	1.057929e-05
TCGA-44-2656-01A-02W-0928-08	2053	939	1114	734	5.426206e-01	2	all capture (no interval list)	65505363	205	720	3.129515e-06	1.099147e-05
TCGA-44-2657-01A-01D-1105-08	1162	495	667	375	5.740103e-01	2	all capture (no interval list)	65505363	120	371	1.831911e-06	5.663658e-06
TCGA-44-2659-01A-01D-0969-08	1077	437	640	350	5.942433e-01	2	all capture (no interval list)	65505363	84	345	1.282338e-06	5.266744e-06
TCGA-44-2659-01A-01W-0928-08	1047	462	585	369	5.587393e-01	2	all capture (no interval list)	65505363	91	361	1.389199e-06	5.510999e-06
TCGA-44-2661-01A-01D-1105-08	147	86	61	60	4.149660e-01	2	all capture (no interval list)	65505363	26	59	3.969141e-07	9.006896e-07
TCGA-44-2662-01A-01D-0969-08	582	252	330	187	5.670103e-01	2	all capture (no interval list)	65505363	65	187	9.922852e-07	2.854728e-06
TCGA-44-2662-01A-01W-0928-08	500	247	253	179	5.060000e-01	2	all capture (no interval list)	65505363	66	178	1.007551e-06	2.717335e-06
TCGA-44-2665-01A-01D-1040-01	115	50	65	33	5.652174e-01	2	all capture (no interval list)	65505363	17	32	2.595207e-07	4.885096e-07
TCGA-44-2665-01A-01W-0928-08	163	75	88	53	5.398773e-01	2	all capture (no interval list)	65505363	22	52	3.358504e-07	7.938281e-07
TCGA-44-2666-01A-01D-1489-08	163	51	112	46	6.871166e-01	2	all capture (no interval list)	65505363	5	46	7.632963e-08	7.022326e-07
TCGA-44-2666-01A-01W-0928-08	101	45	56	37	5.544554e-01	2	all capture (no interval list)	65505363	7	37	1.068615e-07	5.648392e-07
TCGA-44-2668-01A-01D-0969-08	1134	454	680	343	5.996473e-01	2	all capture (no interval list)	65505363	107	340	1.633454e-06	5.190415e-06
TCGA-44-2668-01A-01W-0928-08	1016	442	574	332	5.649606e-01	2	all capture (no interval list)	65505363	105	329	1.602922e-06	5.022490e-06
TCGA-44-3396-01A-01D-1265-08	430	212	218	165	5.069767e-01	2	all capture (no interval list)	65505363	47	163	7.174985e-07	2.488346e-06
TCGA-44-3398-01A-01D-1105-08	492	236	256	178	5.203252e-01	2	all capture (no interval list)	65505363	58	177	8.854237e-07	2.702069e-06
TCGA-44-3918-01A-01D-1105-08	2591	1139	1452	914	5.604014e-01	2	all capture (no interval list)	65505363	223	887	3.404301e-06	1.354088e-05
TCGA-44-3919-01A-02D-1105-08	98	35	63	27	6.428571e-01	2	all capture (no interval list)	65505363	8	27	1.221274e-07	4.121800e-07
TCGA-44-3919-01A-02D-1458-08	171	74	97	60	5.672515e-01	2	all capture (no interval list)	65505363	14	60	2.137230e-07	9.159555e-07
TCGA-44-4112-01A-01D-1105-08	1186	511	675	397	5.691400e-01	2	all capture (no interval list)	65505363	112	390	1.709784e-06	5.953711e-06
TCGA-44-4112-01A-01D-1458-08	1220	490	730	378	5.983607e-01	2	all capture (no interval list)	65505363	109	371	1.663986e-06	5.663658e-06
TCGA-44-5643-01A-01D-1625-08	355	158	197	119	5.549296e-01	2	all capture (no interval list)	65505363	38	118	5.801052e-07	1.801379e-06
TCGA-44-5645-01A-01D-1625-08	111	51	60	41	5.405405e-01	2	all capture (no interval list)	65505363	9	41	1.373933e-07	6.259030e-07
TCGA-44-6144-01A-11D-1753-08	619	262	357	200	5.767367e-01	2	all capture (no interval list)	65505363	61	193	9.312215e-07	2.946324e-06
TCGA-44-6145-01A-11D-1753-08	775	359	416	290	5.367742e-01	2	all capture (no interval list)	65505363	68	287	1.038083e-06	4.381321e-06
TCGA-44-6146-01A-11D-1753-08	117	54	63	40	5.384615e-01	2	all capture (no interval list)	65505363	13	40	1.984570e-07	6.106370e-07
TCGA-44-6147-01A-11D-1753-08	517	246	271	169	5.241779e-01	2	all capture (no interval list)	65505363	72	164	1.099147e-06	2.503612e-06
TCGA-44-6148-01A-11D-1753-08	31	14	17	9	5.483871e-01	2	all capture (no interval list)	65505363	5	9	7.632963e-08	1.373933e-07
TCGA-44-6774-01A-21D-1855-08	926	406	520	311	5.615551e-01	2	all capture (no interval list)	65505363	95	307	1.450263e-06	4.686639e-06
TCGA-44-6775-01A-11D-1855-08	280	150	130	109	4.642857e-01	2	all capture (no interval list)	65505363	41	108	6.259030e-07	1.648720e-06
TCGA-44-6776-01A-11D-1855-08	663	250	413	196	6.229261e-01	2	all capture (no interval list)	65505363	51	189	7.785622e-07	2.885260e-06
TCGA-44-6777-01A-11D-1855-08	1238	570	668	434	5.395800e-01	2	all capture (no interval list)	65505363	134	424	2.045634e-06	6.472752e-06
TCGA-44-6778-01A-11D-1855-08	1141	482	659	367	5.775635e-01	2	all capture (no interval list)	65505363	112	358	1.709784e-06	5.465201e-06
TCGA-44-6779-01A-11D-1855-08	406	144	262	112	6.453202e-01	2	all capture (no interval list)	65505363	31	108	4.732437e-07	1.648720e-06
TCGA-49-4486-01A-01D-1265-08	703	348	355	254	5.049787e-01	2	all capture (no interval list)	65505363	90	253	1.373933e-06	3.862279e-06
TCGA-49-4487-01A-21D-1855-08	1037	520	517	409	4.985535e-01	2	all capture (no interval list)	65505363	110	402	1.679252e-06	6.136902e-06
TCGA-49-4488-01A-01D-1753-08	779	341	438	265	5.622593e-01	2	all capture (no interval list)	65505363	75	264	1.144944e-06	4.030204e-06
TCGA-49-4490-01A-21D-1855-08	224	108	116	78	5.178571e-01	2	all capture (no interval list)	65505363	30	76	4.579778e-07	1.160210e-06
TCGA-49-4494-01A-01D-1265-08	568	235	333	182	5.862676e-01	2	all capture (no interval list)	65505363	51	180	7.785622e-07	2.747867e-06
TCGA-49-4501-01A-01D-1265-08	206	107	99	77	4.805825e-01	2	all capture (no interval list)	65505363	30	76	4.579778e-07	1.160210e-06
TCGA-49-4505-01A-01D-1265-08	551	225	326	166	5.916515e-01	2	all capture (no interval list)	65505363	59	164	9.006896e-07	2.503612e-06
TCGA-49-4506-01A-01D-1265-08	364	178	186	144	5.109890e-01	2	all capture (no interval list)	65505363	34	142	5.190415e-07	2.167761e-06
TCGA-49-4507-01A-01D-1265-08	563	250	313	197	5.559503e-01	2	all capture (no interval list)	65505363	53	195	8.090941e-07	2.976855e-06
TCGA-49-4510-01A-01D-1265-08	543	254	289	175	5.322284e-01	2	all capture (no interval list)	65505363	77	173	1.175476e-06	2.641005e-06
TCGA-49-4512-01A-21D-1855-08	181	75	106	54	5.856354e-01	2	all capture (no interval list)	65505363	21	53	3.205844e-07	8.090941e-07
TCGA-49-4514-01A-21D-1855-08	882	400	482	304	5.464853e-01	2	all capture (no interval list)	65505363	96	302	1.465529e-06	4.610310e-06
TCGA-49-6742-01A-11D-1855-08	783	365	418	265	5.338442e-01	2	all capture (no interval list)	65505363	97	264	1.480795e-06	4.030204e-06
TCGA-49-6743-01A-11D-1855-08	2013	968	1045	723	5.191257e-01	2	all capture (no interval list)	65505363	242	713	3.694354e-06	1.088460e-05
TCGA-49-6744-01A-11D-1855-08	676	351	325	274	4.807692e-01	2	all capture (no interval list)	65505363	76	268	1.160210e-06	4.091268e-06
TCGA-49-6745-01A-11D-1855-08	406	198	208	147	5.123153e-01	2	all capture (no interval list)	65505363	50	144	7.632963e-07	2.198293e-06
TCGA-49-6767-01A-11D-1855-08	1309	600	709	441	5.416348e-01	2	all capture (no interval list)	65505363	158	431	2.412016e-06	6.579614e-06
TCGA-50-5044-01A-21D-1855-08	403	219	184	151	4.565757e-01	2	all capture (no interval list)	65505363	67	150	1.022817e-06	2.289889e-06
TCGA-50-5045-01A-01D-1625-08	745	376	369	305	4.953020e-01	2	all capture (no interval list)	65505363	71	300	1.083881e-06	4.579778e-06
TCGA-50-5049-01A-01D-1625-08	1929	1041	888	809	4.603421e-01	2	all capture (no interval list)	65505363	227	801	3.465365e-06	1.222801e-05
TCGA-50-5051-01A-21D-1855-08	499	238	261	168	5.230461e-01	2	all capture (no interval list)	65505363	70	167	1.068615e-06	2.549410e-06
TCGA-50-5055-01A-01D-1625-08	48	24	24	22	5.000000e-01	2	all capture (no interval list)	65505363	2	22	3.053185e-08	3.358504e-07
TCGA-50-5066-01A-01D-1625-08	674	341	333	276	4.940653e-01	2	all capture (no interval list)	65505363	64	273	9.770192e-07	4.167598e-06
TCGA-50-5068-01A-01D-1625-08	229	117	112	90	4.890830e-01	2	all capture (no interval list)	65505363	27	89	4.121800e-07	1.358667e-06
TCGA-50-5072-01A-21D-1855-08	462	215	247	169	5.346320e-01	2	all capture (no interval list)	65505363	43	167	6.564348e-07	2.549410e-06
TCGA-50-5930-01A-11D-1753-08	58	28	30	28	5.172414e-01	2	all capture (no interval list)	65505363	0	27	0	4.121800e-07
TCGA-50-5931-01A-11D-1753-08	855	355	500	281	5.847953e-01	2	all capture (no interval list)	65505363	74	276	1.129678e-06	4.213395e-06
TCGA-50-5932-01A-11D-1753-08	233	87	146	70	6.266094e-01	2	all capture (no interval list)	65505363	15	68	2.289889e-07	1.038083e-06
TCGA-50-5933-01A-11D-1753-08	1327	670	657	518	4.951017e-01	2	all capture (no interval list)	65505363	149	507	2.274623e-06	7.739824e-06
TCGA-50-5935-01A-11D-1753-08	272	144	128	112	4.705882e-01	2	all capture (no interval list)	65505363	32	111	4.885096e-07	1.694518e-06
TCGA-50-5936-01A-11D-1625-08	308	149	159	115	5.162338e-01	2	all capture (no interval list)	65505363	34	114	5.190415e-07	1.740316e-06
TCGA-50-5939-01A-11D-1625-08	221	99	122	79	5.520362e-01	2	all capture (no interval list)	65505363	20	78	3.053185e-07	1.190742e-06
TCGA-50-5941-01A-11D-1753-08	1048	505	543	387	5.181298e-01	2	all capture (no interval list)	65505363	117	384	1.786113e-06	5.862115e-06
TCGA-50-5942-01A-21D-1753-08	166	93	73	71	4.397590e-01	2	all capture (no interval list)	65505363	22	70	3.358504e-07	1.068615e-06
TCGA-50-5944-01A-11D-1753-08	241	83	158	60	6.556017e-01	2	all capture (no interval list)	65505363	23	59	3.511163e-07	9.006896e-07
TCGA-50-5946-01A-11D-1753-08	47	21	26	21	5.531915e-01	2	all capture (no interval list)	65505363	0	21	0	3.205844e-07
TCGA-50-6590-01A-12D-1855-08	2331	1173	1158	914	4.967825e-01	2	all capture (no interval list)	65505363	251	898	3.831747e-06	1.370880e-05
TCGA-50-6591-01A-11D-1753-08	173	86	87	69	5.028902e-01	2	all capture (no interval list)	65505363	17	69	2.595207e-07	1.053349e-06
TCGA-50-6592-01A-11D-1753-08	751	355	396	277	5.272969e-01	2	all capture (no interval list)	65505363	78	273	1.190742e-06	4.167598e-06
TCGA-50-6593-01A-11D-1753-08	751	372	379	279	5.046605e-01	2	all capture (no interval list)	65505363	93	273	1.419731e-06	4.167598e-06
TCGA-50-6594-01A-11D-1753-08	1371	606	765	481	5.579869e-01	2	all capture (no interval list)	65505363	123	476	1.877709e-06	7.266581e-06
TCGA-50-6595-01A-12D-1855-08	278	139	139	110	5.000000e-01	2	all capture (no interval list)	65505363	29	109	4.427118e-07	1.663986e-06
TCGA-50-6597-01A-11D-1855-08	218	101	117	77	5.366972e-01	2	all capture (no interval list)	65505363	24	77	3.663822e-07	1.175476e-06
TCGA-55-1592-01A-01D-0969-08	1384	519	865	408	6.250000e-01	2	all capture (no interval list)	65505363	110	402	1.679252e-06	6.136902e-06
TCGA-55-1592-01A-01W-0928-08	1346	604	742	467	5.512630e-01	2	all capture (no interval list)	65505363	134	460	2.045634e-06	7.022326e-06
TCGA-55-1594-01A-01D-1040-01	424	175	249	130	5.872642e-01	2	all capture (no interval list)	65505363	45	128	6.869667e-07	1.954038e-06
TCGA-55-1594-01A-01W-0928-08	389	191	198	142	5.089974e-01	2	all capture (no interval list)	65505363	49	140	7.480304e-07	2.137230e-06
TCGA-55-1595-01A-01D-0969-08	596	281	315	216	5.285235e-01	2	all capture (no interval list)	65505363	62	216	9.464874e-07	3.297440e-06
TCGA-55-1596-01A-01D-1040-01	458	187	271	153	5.917031e-01	2	all capture (no interval list)	65505363	34	151	5.190415e-07	2.305155e-06
TCGA-55-1596-01A-01W-0928-08	497	206	291	161	5.855131e-01	2	all capture (no interval list)	65505363	43	158	6.564348e-07	2.412016e-06
TCGA-55-5899-01A-11D-1625-08	1201	513	688	391	5.728560e-01	2	all capture (no interval list)	65505363	121	387	1.847177e-06	5.907913e-06
TCGA-55-6543-01A-11D-1753-08	80	35	45	28	5.625000e-01	2	all capture (no interval list)	65505363	6	27	9.159555e-08	4.121800e-07
TCGA-55-6642-01A-11D-1855-08	454	221	233	165	5.132159e-01	2	all capture (no interval list)	65505363	55	159	8.396259e-07	2.427282e-06
TCGA-55-6712-01A-11D-1855-08	587	311	276	204	4.701874e-01	2	all capture (no interval list)	65505363	105	202	1.602922e-06	3.083717e-06
TCGA-64-1676-01A-01D-0969-08	1672	678	994	522	5.944976e-01	2	all capture (no interval list)	65505363	152	519	2.320421e-06	7.923015e-06
TCGA-64-1676-01A-01W-0928-08	1533	647	886	497	5.779517e-01	2	all capture (no interval list)	65505363	146	496	2.228825e-06	7.571899e-06
TCGA-64-1677-01A-01W-0928-08	554	274	280	206	5.054152e-01	2	all capture (no interval list)	65505363	68	203	1.038083e-06	3.098983e-06
TCGA-64-1678-01A-01W-0928-08	1116	483	633	380	5.672043e-01	2	all capture (no interval list)	65505363	102	372	1.557124e-06	5.678924e-06
TCGA-64-1680-01A-02D-0969-08	202	64	138	48	6.831683e-01	2	all capture (no interval list)	65505363	16	48	2.442548e-07	7.327644e-07
TCGA-64-1680-01A-02W-0928-08	131	64	67	48	5.114504e-01	2	all capture (no interval list)	65505363	16	47	2.442548e-07	7.174985e-07
TCGA-64-5774-01A-01D-1625-08	390	169	221	132	5.666667e-01	2	all capture (no interval list)	65505363	37	130	5.648392e-07	1.984570e-06
TCGA-64-5775-01A-01D-1625-08	1287	559	728	428	5.656566e-01	2	all capture (no interval list)	65505363	129	420	1.969304e-06	6.411689e-06
TCGA-64-5778-01A-01D-1625-08	1277	549	728	432	5.700861e-01	2	all capture (no interval list)	65505363	116	425	1.770847e-06	6.488018e-06
TCGA-64-5779-01A-01D-1625-08	965	416	549	327	5.689119e-01	2	all capture (no interval list)	65505363	88	323	1.343401e-06	4.930894e-06
TCGA-64-5781-01A-01D-1625-08	2648	1338	1310	1029	4.947130e-01	2	all capture (no interval list)	65505363	304	1015	4.640841e-06	1.549491e-05
TCGA-64-5815-01A-01D-1625-08	418	210	208	158	4.976077e-01	2	all capture (no interval list)	65505363	52	155	7.938281e-07	2.366218e-06
TCGA-67-3770-01A-01D-0969-08	589	237	352	182	5.976231e-01	2	all capture (no interval list)	65505363	54	180	8.243600e-07	2.747867e-06
TCGA-67-3770-01A-01W-0928-08	549	226	323	173	5.883424e-01	2	all capture (no interval list)	65505363	52	170	7.938281e-07	2.595207e-06
TCGA-67-3771-01A-01D-1040-01	1703	765	938	582	5.507927e-01	2	all capture (no interval list)	65505363	181	576	2.763133e-06	8.793173e-06
TCGA-67-3771-01A-01W-0928-08	2819	1258	1561	966	5.537425e-01	2	all capture (no interval list)	65505363	286	952	4.366055e-06	1.453316e-05
TCGA-67-3772-01A-01W-0928-08	192	91	101	67	5.260417e-01	2	all capture (no interval list)	65505363	24	65	3.663822e-07	9.922852e-07
TCGA-67-3773-01A-01D-1040-01	342	117	225	94	6.578947e-01	2	all capture (no interval list)	65505363	22	91	3.358504e-07	1.389199e-06
TCGA-67-3773-01A-01W-0928-08	291	111	180	89	6.185567e-01	2	all capture (no interval list)	65505363	22	88	3.358504e-07	1.343401e-06
TCGA-67-3774-01A-01D-1040-01	327	125	202	87	6.177370e-01	2	all capture (no interval list)	65505363	35	85	5.343074e-07	1.297604e-06
TCGA-67-3774-01A-01W-0928-08	323	136	187	100	5.789474e-01	2	all capture (no interval list)	65505363	34	98	5.190415e-07	1.496061e-06
TCGA-67-4679-01B-01D-1753-08	768	349	419	270	5.455729e-01	2	all capture (no interval list)	65505363	76	263	1.160210e-06	4.014938e-06
TCGA-67-6215-01A-11D-1753-08	298	148	150	120	5.033557e-01	2	all capture (no interval list)	65505363	28	118	4.274459e-07	1.801379e-06
TCGA-67-6216-01A-11D-1753-08	118	55	63	44	5.338983e-01	2	all capture (no interval list)	65505363	11	43	1.679252e-07	6.564348e-07
TCGA-67-6217-01A-11D-1753-08	427	228	199	182	4.660422e-01	2	all capture (no interval list)	65505363	45	181	6.869667e-07	2.763133e-06
TCGA-71-6725-01A-11D-1855-08	370	201	169	121	4.567568e-01	2	all capture (no interval list)	65505363	79	117	1.206008e-06	1.786113e-06
TCGA-73-4658-01A-01D-1753-08	662	372	290	291	4.380665e-01	2	all capture (no interval list)	65505363	80	288	1.221274e-06	4.396587e-06
TCGA-73-4659-01A-01D-1265-08	641	274	367	203	5.725429e-01	2	all capture (no interval list)	65505363	70	202	1.068615e-06	3.083717e-06
TCGA-73-4662-01A-01D-1265-08	613	281	332	218	5.415987e-01	2	all capture (no interval list)	65505363	63	216	9.617533e-07	3.297440e-06
TCGA-73-4666-01A-01D-1265-08	1129	467	662	352	5.863596e-01	2	all capture (no interval list)	65505363	114	347	1.740316e-06	5.297276e-06
TCGA-73-4668-01A-01D-1265-08	1492	538	954	440	6.394102e-01	2	all capture (no interval list)	65505363	95	430	1.450263e-06	6.564348e-06
TCGA-73-4670-01A-01D-1265-08	1059	421	638	328	6.024551e-01	2	all capture (no interval list)	65505363	91	323	1.389199e-06	4.930894e-06
TCGA-73-4675-01A-01D-1265-08	215	95	120	72	5.581395e-01	2	all capture (no interval list)	65505363	23	72	3.511163e-07	1.099147e-06
TCGA-73-4676-01A-01D-1753-08	254	117	137	86	5.393701e-01	2	all capture (no interval list)	65505363	29	84	4.427118e-07	1.282338e-06
TCGA-73-4677-01A-01D-1265-08	721	299	422	235	5.852982e-01	2	all capture (no interval list)	65505363	62	233	9.464874e-07	3.556961e-06
TCGA-75-5122-01A-01D-1753-08	357	188	169	131	4.733894e-01	2	all capture (no interval list)	65505363	57	128	8.701578e-07	1.954038e-06
TCGA-75-5125-01A-01D-1753-08	442	215	227	167	5.135747e-01	2	all capture (no interval list)	65505363	47	163	7.174985e-07	2.488346e-06
TCGA-75-5126-01A-01D-1753-08	1648	802	846	609	5.133495e-01	2	all capture (no interval list)	65505363	190	602	2.900526e-06	9.190087e-06
TCGA-75-5146-01A-01D-1625-08	515	225	290	172	5.631068e-01	2	all capture (no interval list)	65505363	53	164	8.090941e-07	2.503612e-06
TCGA-75-5147-01A-01D-1625-08	126	56	70	46	5.555556e-01	2	all capture (no interval list)	65505363	10	46	1.526593e-07	7.022326e-07
TCGA-75-6203-01A-11D-1753-08	55	25	30	15	5.454545e-01	2	all capture (no interval list)	65505363	9	15	1.373933e-07	2.289889e-07
TCGA-75-6205-01A-11D-1753-08	104	57	47	48	4.519231e-01	2	all capture (no interval list)	65505363	9	48	1.373933e-07	7.327644e-07
TCGA-75-6206-01A-11D-1753-08	271	104	167	85	6.162362e-01	2	all capture (no interval list)	65505363	19	84	2.900526e-07	1.282338e-06
TCGA-75-6207-01A-11D-1753-08	183	83	100	63	5.464481e-01	2	all capture (no interval list)	65505363	20	62	3.053185e-07	9.464874e-07
TCGA-75-6211-01A-11D-1753-08	890	430	460	346	5.168539e-01	2	all capture (no interval list)	65505363	84	342	1.282338e-06	5.220947e-06
TCGA-75-6212-01A-11D-1753-08	76	29	47	21	6.184211e-01	2	all capture (no interval list)	65505363	8	21	1.221274e-07	3.205844e-07
TCGA-80-5611-01A-01D-1625-08	533	244	289	195	5.422139e-01	2	all capture (no interval list)	65505363	49	190	7.480304e-07	2.900526e-06
TCGA-86-6562-01A-11D-1753-08	177	75	102	59	5.762712e-01	2	all capture (no interval list)	65505363	16	57	2.442548e-07	8.701578e-07
TCGA-91-6828-01A-11D-1855-08	951	440	511	355	5.373291e-01	2	all capture (no interval list)	65505363	84	350	1.282338e-06	5.343074e-06
TCGA-91-6829-01A-21D-1855-08	1806	770	1036	603	5.736434e-01	2	all capture (no interval list)	65505363	166	592	2.534144e-06	9.037428e-06
TCGA-91-6831-01A-11D-1855-08	736	348	388	268	5.271739e-01	2	all capture (no interval list)	65505363	79	262	1.206008e-06	3.999673e-06
TCGA-91-6835-01A-11D-1855-08	268	123	145	92	5.410448e-01	2	all capture (no interval list)	65505363	31	90	4.732437e-07	1.373933e-06
TCGA-91-6836-01A-21D-1855-08	2268	1161	1107	822	4.880952e-01	2	all capture (no interval list)	65505363	331	807	5.053021e-06	1.231960e-05