Clinical Features	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	3 (8%)	34	0.56757	1	0.087516	1	0.22857	1	0.48253	1	1	1	NA	NA	1	1	NA	NA
1q gain	10 (27%)	27	0.27436	1	0.72458	1	0.71119	1	0.42548	1	1	1	0.39437	1	0.68284	1	0.095279	1
3p gain	8 (22%)	29	0.25405	1	0.42826	1	1	1	0.87818	1	0.64427	1	0.75385	1	0.36522	1	1	1
3q gain	9 (24%)	28	0.13572	1	0.25053	1	1	1	1	1	1	1	0.57662	1	0.66522	1	0.91334	1
5p gain	11 (30%)	26	0.15138	1	1	1	1	1	0.75332	1	0.087331	1	0.19198	1	0.11002	1	0.16415	1
5q gain	7 (19%)	30	1	1	0.68	1	1	1	0.44204	1	0.12131	1	0.18699	1	0.33043	1	0.27237	1
7p gain	10 (27%)	27	0.066666	1	1	1	1	1	0.42363	1	0.098853	1	0.18975	1	0.21638	1	0.53499	1
7q gain	7 (19%)	30	0.43728	1	0.68	1	1	1	0.33574	1	0.35239	1	0.31972	1	0.65217	1	0.62085	1
8p gain	5 (14%)	32	1	1	1	1	1	1	0.8372	1	0.6169	1	0.47411	1	0.33043	1	0.23008	1
8q gain	6 (16%)	31	0.67963	1	1	1	0.65815	1	0.62977	1	1	1	0.44161	1	0.65217	1	0.31245	1
11p gain	6 (16%)	31	0.37069	1	1	1	0.65815	1	0.45945	1	0.26154	1	0.24968	1	1	1	0.49101	1
11q gain	5 (14%)	32	0.63386	1	1	1	1	1	0.02222	1	0.13579	1	0.20975	1	0.59826	1	0.3251	1
12p gain	7 (19%)	30	0.02874	1	0.68	1	1	1	0.33522	1	0.62542	1	0.48003	1	0.30609	1	0.73863	1
12q gain	7 (19%)	30	0.02874	1	0.68	1	1	1	0.33366	1	0.62542	1	0.47732	1	0.30609	1	0.74202	1
15q gain	5 (14%)	32	0.14439	1	0.34792	1	1	1	0.02213	1	1	1	1	1	0.59826	1	0.65225	1
16p gain	8 (22%)	29	0.25405	1	1	1	0.69057	1	0.00134	0.531	0.66798	1	0.36078	1	0.3913	1	0.42036	1
16q gain	9 (24%)	28	0.13572	1	0.70339	1	0.44302	1	0.01931	1	0.41985	1	0.61302	1	0.21638	1	0.70329	1
17p gain	3 (8%)	34	0.072072	1	0.087516	1	0.22857	1	0.26154	1	0.38462	1	NA	NA	0.46154	1	NA	NA
17q gain	7 (19%)	30	0.02874	1	1	1	1	1	0.01984	1	1	1	0.52492	1	0.59826	1	0.25568	1
18p gain	3 (8%)	34	0.56757	1	0.5843	1	0.22857	1	0.47911	1	0.50769	1	NA	NA	0.48308	1	NA	NA
19p gain	5 (14%)	32	0.63386	1	1	1	1	1	0.22641	1	1	1	0.71624	1	0.59826	1	0.41523	1
19q gain	3 (8%)	34	0.56757	1	0.5843	1	1	1	0.4787	1	0.50769	1	NA	NA	0.48308	1	NA	NA
20p gain	3 (8%)	34	1	1	0.5843	1	1	1	0.47718	1	1	1	NA	NA	1	1	NA	NA
20q gain	3 (8%)	34	1	1	0.5843	1	0.22857	1	0.48137	1	1	1	1	1	1	1	1	1
1p loss	7 (19%)	30	0.20217	1	1	1	1	1	0.44031	1	0.35239	1	1	1	0.65217	1	0.64515	1
2q loss	3 (8%)	34	0.56757	1	0.5843	1	1	1	1	1	0.26154	1	0.60149	1	0.22462	1	0.40899	1
4p loss	16 (43%)	21	0.051561	1	0.74631	1	0.31453	1	0.03484	1	0.42164	1	0.15916	1	0.43124	1	0.02592	1
4q loss	14 (38%)	23	0.30512	1	0.32767	1	0.085802	1	0.01133	1	0.70149	1	0.20473	1	0.26706	1	0.11199	1
5q loss	3 (8%)	34	0.56757	1	0.5843	1	1	1	0.76179	1	1	1	NA	NA	1	1	NA	NA
6p loss	6 (16%)	31	0.066243	1	1	1	0.65815	1	0.03531	1	1	1	0.14064	1	0.59826	1	0.28429	1
6q loss	14 (38%)	23	0.73317	1	0.32767	1	0.73322	1	0.63317	1	1	1	0.13137	1	0.68284	1	0.37357	1
8p loss	5 (14%)	32	1	1	1	1	0.33766	1	0.59484	1	1	1	NA	NA	1	1	NA	NA
9p loss	15 (41%)	22	0.0058752	1	1	1	0.040912	1	0.0074599	1	0.42164	1	0.24443	1	0.43124	1	0.2295	1
9q loss	11 (30%)	26	0.15138	1	0.71947	1	0.14635	1	0.085759	1	0.42496	1	0.34955	1	0.42164	1	0.55223	1
10p loss	11 (30%)	26	0.15138	1	1	1	0.47052	1	0.21022	1	1	1	0.27751	1	0.42164	1	0.089569	1
10q loss	8 (22%)	29	0.70484	1	1	1	0.69057	1	0.70092	1	1	1	0.7626	1	0.19043	1	0.22264	1
11q loss	4 (11%)	33	1	1	0.036036	1	0.1039	1	0.02824	1	0.046154	1	0.03128	1	0.084615	1	0.1422	1
13q loss	18 (49%)	19	0.048853	1	0.10314	1	0.31754	1	0.69976	1	1	1	0.53755	1	1	1	0.39844	1
14q loss	16 (43%)	21	0.0089618	1	0.74631	1	1	1	0.2118	1	0.10537	1	0.15908	1	0.43124	1	0.02555	1
15q loss	6 (16%)	31	0.37069	1	0.075231	1	0.17742	1	0.33387	1	0.62542	1	0.87558	1	0.30609	1	0.95549	1
16p loss	3 (8%)	34	0.56757	1	0.5843	1	1	1	0.76283	1	1	1	NA	NA	0.20308	1	NA	NA
16q loss	4 (11%)	33	0.29624	1	1	1	0.6026	1	1	1	1	1	1	1	0.58	1	1	1
17p loss	9 (24%)	28	1	1	1	1	0.69057	1	0.53734	1	0.19039	1	0.94102	1	0.3913	1	0.80349	1
17q loss	3 (8%)	34	1	1	0.5843	1	1	1	0.76126	1	1	1	1	1	0.58	1	1	1
18p loss	5 (14%)	32	1	1	0.64432	1	1	1	0.5958	1	0.6169	1	1	1	0.63478	1	0.7716	1
18q loss	9 (24%)	28	1	1	1	1	1	1	0.69901	1	0.66798	1	0.94199	1	0.66522	1	0.30385	1
19q loss	3 (8%)	34	1	1	1	1	1	1	0.76174	1	1	1	NA	NA	0.20308	1	NA	NA
20p loss	7 (19%)	30	0.02874	1	0.097461	1	1	1	0.57238	1	0.6169	1	0.71475	1	1	1	0.53885	1
20q loss	3 (8%)	34	0.072072	1	1	1	1	1	0.76383	1	1	1	NA	NA	0.20308	1	NA	NA
21q loss	6 (16%)	31	0.066243	1	1	1	0.65815	1	1	1	0.6169	1	0.97499	1	1	1	0.93871	1
22q loss	29 (78%)	8	0.10357	1	0.10901	1	0.69057	1	1	1	0.053208	1	0.13393	1	0.017057	1	0.0084099	1
xq loss	7 (19%)	30	0.02874	1	0.0094185	1	0.40176	1	0.66096	1	1	1	0.39259	1	1	1	0.30226	1