Clinical Features	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_12p11.21	10 (27%)	27	0.0094843	1	0.45974	1	0.71119	1	0.51712	1	1	1	0.57442	1	0.66522	1	0.91439	1
amp_17q24.3	12 (32%)	25	0.076805	1	1	1	0.72467	1	0.37255	1	1	1	0.066499	1	0.66522	1	0.41765	1
amp_19q13.43	4 (11%)	33	0.29624	1	1	1	0.6026	1	0.17813	1	1	1	0.59688	1	1	1	0.41201	1
amp_20p12.1	4 (11%)	33	0.61844	1	1	1	1	1	1	1	1	1	NA	NA	1	1	NA	NA
del_1p36.23	17 (46%)	20	0.0029797	0.521	1	1	1	1	0.20882	1	0.68817	1	0.065149	1	0.6951	1	0.02032	1
del_1p22.1	17 (46%)	20	0.10381	1	0.09937	1	0.73799	1	0.91646	1	1	1	0.54126	1	1	1	0.61163	1
del_2q35	8 (22%)	29	0.055384	1	0.42826	1	1	1	0.87927	1	1	1	0.21273	1	0.59826	1	0.1629	1
del_3p21.1	21 (57%)	16	0.51948	1	0.74631	1	0.31453	1	0.0080699	1	0.00072274	0.129	0.058249	1	0.001723	0.305	0.0061799	1
del_4q26	18 (49%)	19	0.0081381	1	0.10314	1	0.018394	1	0.04709	1	1	1	0.13632	1	1	1	0.11213	1
del_5q23.2	7 (19%)	30	0.20217	1	0.41646	1	1	1	1	1	1	1	0.91276	1	1	1	0.54067	1
del_6q22.31	20 (54%)	17	0.50847	1	0.51738	1	0.31453	1	0.099599	1	1	1	0.098319	1	1	1	0.21585	1
del_9p21.3	23 (62%)	14	2.0985e-05	0.00378	1	1	0.16418	1	0.067479	1	1	1	0.29696	1	1	1	0.4582	1
del_10p15.1	13 (35%)	24	0.035736	1	0.51189	1	0.16418	1	0.17225	1	1	1	0.3926	1	0.69217	1	0.25404	1
del_10q22.3	7 (19%)	30	0.43728	1	0.68	1	0.40176	1	0.3349	1	1	1	0.75576	1	0.36522	1	0.14035	1
del_10q24.1	13 (35%)	24	0.48911	1	0.7307	1	1	1	0.56145	1	0.22797	1	0.16069	1	0.044737	1	0.01823	1
del_13q13.3	21 (57%)	16	0.017812	1	0.50847	1	0.17558	1	0.69444	1	1	1	0.81393	1	1	1	0.57538	1
del_14q11.2	16 (43%)	21	0.0089618	1	0.74631	1	1	1	0.21111	1	0.10537	1	0.15736	1	0.43124	1	0.02608	1
del_14q32.31	19 (51%)	18	0.0025498	0.449	1	1	1	1	0.12724	1	0.10537	1	0.15715	1	0.43124	1	0.02547	1
del_15q15.1	14 (38%)	23	0.001568	0.279	1	1	0.30527	1	0.078799	1	1	1	0.46488	1	1	1	0.24989	1
del_16p13.3	3 (8%)	34	1	1	0.087516	1	0.22857	1	0.47948	1	1	1	NA	NA	1	1	NA	NA
del_16q21	9 (24%)	28	0.023939	1	1	1	1	1	0.23165	1	0.66449	1	0.6124	1	0.40092	1	0.51755	1
del_16q24.1	11 (30%)	26	0.0034242	0.596	0.49505	1	0.14635	1	0.75156	1	1	1	0.76045	1	1	1	0.73984	1
del_22q12.2	29 (78%)	8	0.10357	1	0.10901	1	0.69057	1	1	1	0.053208	1	0.13432	1	0.017057	1	0.0074399	1