Clinical Features	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1p34.2	7 (7%)	95	0.65587	1	0.88581	1	0.75531	1	0.41697	1	0.93927	1	0.21189	1	0.56219	1	0.8578	1
amp_1p12	16 (16%)	86	0.78161	1	1	1	0.5896	1	0.97902	1	0.97424	1	0.37448	1	0.74802	1	0.72772	1
amp_6p21.31	7 (7%)	95	0.070949	1	0.3419	1	0.30347	1	0.62274	1	0.70386	1	0.01676	1	0.13334	1	0.4512	1
amp_7q22.1	29 (28%)	73	9.9999e-06	0.00376	0.02238	1	0.0449	1	0.14742	1	0.33325	1	0.17858	1	0.00469	1	0.02313	1
amp_8q24.21	42 (41%)	60	9.9999e-06	0.00376	0.00028	0.0949	0.078999	1	0.14441	1	0.26374	1	0.00462	1	0.01612	1	0.01333	1
amp_9p13.3	12 (12%)	90	0.04515	1	0.17517	1	0.10956	1	0.55975	1	0.44196	1	0.152	1	0.32046	1	0.070619	1
amp_11p11.2	12 (12%)	90	0.02153	1	0.17397	1	0.45438	1	0.78611	1	0.69409	1	0.19645	1	0.35937	1	0.39576	1
amp_12p13.33	16 (16%)	86	9.9999e-06	0.00376	0.00018	0.0616	0.1878	1	0.3071	1	0.64711	1	0.00050999	0.17	0.052149	1	0.082789	1
amp_12p12.1	22 (22%)	80	9.9999e-06	0.00376	2e-05	0.00726	0.01154	1	0.03413	1	0.14507	1	5e-05	0.0175	0.00204	0.647	0.0065799	1
amp_12p11.21	17 (17%)	85	9.9999e-06	0.00376	0.0011	0.36	0.15164	1	0.26123	1	0.70745	1	0.0072499	1	0.04271	1	0.16022	1
amp_12q15	11 (11%)	91	0.00079999	0.264	0.00135	0.433	0.02053	1	0.0477	1	0.19694	1	0.0061299	1	0.0082799	1	0.03024	1
amp_17p11.2	5 (5%)	97	0.90579	1	0.43821	1	0.59376	1	0.87152	1	0.59574	1	0.31317	1	0.12213	1	0.70337	1
amp_17q21.32	11 (11%)	91	0.04125	1	0.49444	1	0.26707	1	0.56204	1	1	1	0.2085	1	1	1	0.64326	1
amp_18q11.2	34 (33%)	68	9.9999e-06	0.00376	0.00014	0.0482	0.00032	0.108	0.00456	1	9.9999e-05	0.0347	0.00385	1	3e-05	0.0107	0.00081999	0.27
amp_19q13.2	26 (25%)	76	0.00048	0.16	0.00281	0.885	0.15934	1	0.16193	1	0.62262	1	0.18242	1	0.22197	1	0.28812	1
amp_20q13.2	31 (30%)	71	9.9999e-06	0.00376	0.01919	1	0.21748	1	0.61491	1	0.65728	1	0.00494	1	0.15487	1	0.04962	1
amp_xp22.11	5 (5%)	97	0.5702	1	0.84305	1	1	1	0.50737	1	1	1	0.72283	1	0.848	1	0.70055	1
amp_xq27.1	9 (9%)	93	0.10619	1	1	1	0.43557	1	0.57193	1	0.9198	1	0.5617	1	0.90114	1	0.52079	1
del_1p36.32	26 (25%)	76	0.0019	0.604	0.03365	1	0.00183	0.584	0.04416	1	0.066159	1	0.03596	1	0.04693	1	0.10243	1
del_1p36.11	35 (34%)	67	0.00024	0.0818	0.00051999	0.173	5.9999e-05	0.021	0.03019	1	0.01421	1	0.00415	1	0.0050299	1	0.01144	1
del_1p21.2	23 (23%)	79	2e-05	0.00726	0.0059199	1	0.0048	1	0.083969	1	0.16315	1	0.00457	1	0.01432	1	0.12547	1
del_1q42.2	4 (4%)	98	0.0088999	1	0.18186	1	0.80696	1	0.61435	1	1	1	0.43022	1	0.3568	1	0.24198	1
del_2p23.3	11 (11%)	91	0.03199	1	0.2698	1	0.1959	1	0.13077	1	0.22719	1	0.35396	1	0.32189	1	0.11041	1
del_2q37.3	4 (4%)	98	0.03972	1	0.18039	1	0.18209	1	0.40146	1	0.44553	1	0.29982	1	0.083329	1	0.24213	1
del_3p24.1	22 (22%)	80	0.00115	0.375	0.54486	1	0.53075	1	0.68614	1	0.78002	1	0.28264	1	0.33692	1	0.37196	1
del_4q35.2	17 (17%)	85	0.39162	1	0.39671	1	0.52091	1	0.78046	1	1	1	0.71721	1	0.78251	1	0.58451	1
del_5q14.2	24 (24%)	78	3e-05	0.0107	0.052889	1	0.10814	1	0.13782	1	0.35722	1	0.03924	1	0.01259	1	0.1866	1
del_6p25.2	42 (41%)	60	2e-05	0.00726	7.9999e-05	0.0278	0.03948	1	0.12262	1	0.10021	1	0.0059199	1	0.23315	1	0.02136	1
del_7q36.1	11 (11%)	91	0.00039	0.131	0.26831	1	0.83488	1	0.23029	1	0.76902	1	0.02032	1	1	1	0.82626	1
del_8p21.3	32 (31%)	70	0.00016	0.0549	0.00176	0.563	0.0058399	1	0.072799	1	0.096089	1	0.0013	0.419	0.0074399	1	0.03739	1
del_8q12.1	9 (9%)	93	0.5943	1	0.7317	1	0.27169	1	0.53317	1	0.72773	1	0.61467	1	0.48316	1	0.47007	1
del_9p21.3	67 (66%)	35	9.9999e-06	0.00376	2e-05	0.00726	9.9999e-06	0.00376	9.9999e-06	0.00376	2e-05	0.00726	3e-05	0.0107	2e-05	0.00726	3e-05	0.0107
del_9q22.33	27 (26%)	75	0.071159	1	0.83339	1	0.43782	1	0.81789	1	0.64682	1	0.32369	1	0.2441	1	0.80775	1
del_10q23.2	19 (19%)	83	0.00031	0.105	0.1023	1	0.087189	1	0.03855	1	0.67651	1	0.02781	1	0.74543	1	0.02128	1
del_11p15.4	18 (18%)	84	0.03186	1	1	1	0.42865	1	0.42271	1	0.63185	1	0.89884	1	0.78003	1	0.82001	1
del_12p12.3	15 (15%)	87	9.9999e-05	0.0347	0.0024	0.758	0.10606	1	0.11012	1	0.04179	1	0.068049	1	0.14626	1	0.03769	1
del_12q12	11 (11%)	91	0.00126	0.407	0.01109	1	0.18346	1	0.02227	1	0.25649	1	0.065339	1	0.26829	1	0.02967	1
del_12q24.33	22 (22%)	80	0.00444	1	0.04015	1	0.0056699	1	0.02202	1	0.38193	1	0.02726	1	0.27601	1	0.090219	1
del_15q15.1	23 (23%)	79	9.9999e-06	0.00376	0.00026	0.0884	0.00461	1	0.0089799	1	0.17047	1	0.01681	1	0.04692	1	0.01482	1
del_16q23.1	7 (7%)	95	0.13037	1	0.88775	1	0.47633	1	0.52593	1	0.88213	1	0.44323	1	0.66083	1	1	1
del_17q22	28 (27%)	74	9.9999e-06	0.00376	0.00084999	0.279	0.03812	1	0.03912	1	0.13822	1	0.0092599	1	0.0099399	1	0.063249	1
del_18p11.32	38 (37%)	64	0.058599	1	0.38635	1	0.89321	1	0.78449	1	0.84325	1	0.40352	1	0.9634	1	0.67302	1
del_18q21.2	73 (72%)	29	4e-05	0.0141	0.0031	0.973	0.0063899	1	0.01861	1	0.03693	1	0.090319	1	0.01232	1	0.04325	1
del_19p13.3	20 (20%)	82	9.9999e-06	0.00376	0.00116	0.377	0.056699	1	0.03495	1	0.71615	1	0.00044	0.147	0.058529	1	0.19899	1
del_19q13.41	11 (11%)	91	0.04136	1	0.49566	1	0.38738	1	0.26502	1	0.55318	1	0.38848	1	0.9146	1	0.90492	1
del_21q21.1	40 (39%)	62	3e-05	0.0107	0.0012	0.389	0.01307	1	0.01076	1	0.079629	1	0.00403	1	0.02131	1	0.01306	1
del_22q13.31	35 (34%)	67	5.9999e-05	0.021	9.9999e-05	0.0347	0.0072899	1	0.02322	1	0.18808	1	0.00062999	0.209	0.01476	1	0.02906	1