Clinical Features	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1q21.3	30 (19%)	130	9.9999e-06	0.0024	0.60761	1	0.64328	1	0.95792	1	0.90304	1	0.44194	1	0.25428	1	0.84197	1
amp_4q25	6 (4%)	154	0.69672	1	0.76202	1	0.13275	1	0.38223	1	0.76452	1	0.62989	1	0.37693	1	0.76244	1
amp_4q31.1	12 (8%)	148	0.080929	1	0.086019	1	0.74899	1	0.0189	1	0.19891	1	0.18514	1	0.12777	1	0.74669	1
amp_11p15.2	7 (4%)	153	0.4046	1	0.14139	1	0.090889	1	0.092359	1	0.16547	1	0.17806	1	0.04835	1	0.10743	1
amp_12q13.3	16 (10%)	144	0.078999	1	0.13973	1	0.61514	1	0.62074	1	0.04698	1	0.26064	1	0.0082099	1	0.10138	1
amp_14q24.3	10 (6%)	150	0.00075999	0.158	0.19873	1	0.85325	1	0.16898	1	0.45717	1	0.71273	1	0.060409	1	0.59786	1
amp_17q21.31	15 (9%)	145	0.122	1	0.8302	1	0.70163	1	0.00158	0.321	0.88792	1	0.19962	1	0.19354	1	0.39559	1
del_1p12	111 (69%)	49	9.9999e-06	0.0024	9.9999e-06	0.0024	9.9999e-06	0.0024	9.9999e-06	0.0024	0.00056999	0.121	0.01816	1	0.00036	0.077	0.00057999	0.122
del_1q44	21 (13%)	139	0.055429	1	0.35042	1	0.080889	1	0.26986	1	0.38058	1	0.71617	1	0.023	1	0.18505	1
del_2q34	13 (8%)	147	0.059399	1	0.44721	1	0.41826	1	0.14324	1	0.53185	1	0.094559	1	0.61702	1	0.3052	1
del_3p24.1	60 (38%)	100	9.9999e-06	0.0024	0.00323	0.623	0.00015	0.0327	2e-05	0.0045	2e-05	0.0045	0.00022	0.0475	7.9999e-05	0.0176	0.00085999	0.178
del_3q26.1	93 (58%)	67	9.9999e-06	0.0024	0.57309	1	0.01993	1	9.9999e-06	0.0024	0.01333	1	0.0059999	1	0.095719	1	0.00362	0.688
del_4q22.1	15 (9%)	145	0.01801	1	0.2255	1	0.0077799	1	0.079329	1	0.12656	1	0.28976	1	0.12225	1	0.19951	1
del_4q35.2	16 (10%)	144	0.00276	0.544	0.52117	1	0.23349	1	0.36918	1	0.75157	1	0.64096	1	0.52805	1	0.53025	1
del_5q15	12 (8%)	148	0.27653	1	1	1	0.9732	1	1	1	0.92773	1	0.18653	1	0.86567	1	0.74952	1
del_6p12.3	10 (6%)	150	0.18505	1	0.26487	1	0.02055	1	0.092559	1	0.19943	1	0.16883	1	0.76694	1	0.19899	1
del_6q16.1	24 (15%)	136	0.35686	1	0.074209	1	0.02547	1	0.0073599	1	0.01675	1	0.0052299	0.968	0.0062399	1	0.00329	0.632
del_7q33	8 (5%)	152	0.03097	1	0.25731	1	0.0066199	1	0.050529	1	0.01669	1	0.0061199	1	0.52466	1	0.0092699	1
del_8p22	24 (15%)	136	0.060459	1	0.12392	1	0.00247	0.496	0.0065699	1	0.15214	1	0.15499	1	0.02507	1	0.18746	1
del_9p24.2	15 (9%)	145	0.47572	1	0.33931	1	0.083879	1	0.16707	1	0.51389	1	0.072869	1	0.35087	1	0.54247	1
del_9q21.12	14 (9%)	146	0.56169	1	0.55294	1	0.36206	1	0.3576	1	0.72254	1	0.11561	1	0.82569	1	1	1
del_11p15.4	57 (36%)	103	9.9999e-06	0.0024	3e-05	0.00669	0.00024	0.0516	9.9999e-06	0.0024	0.00012	0.0263	9.9999e-06	0.0024	9.9999e-06	0.0024	4e-05	0.00888
del_11q22.1	44 (28%)	116	9.9999e-06	0.0024	0.20731	1	0.00294	0.576	0.00421	0.791	0.00467	0.873	0.00103	0.212	0.00133	0.273	0.00411	0.777
del_12q21.33	8 (5%)	152	0.3235	1	0.89348	1	0.91177	1	0.87615	1	0.59363	1	0.702	1	0.40876	1	0.5271	1
del_13q22.3	7 (4%)	153	0.72592	1	0.88898	1	0.36766	1	0.67588	1	0.79375	1	0.45064	1	0.54103	1	0.48404	1
del_16q21	5 (3%)	155	0.01438	1	0.11422	1	0.55393	1	0.01459	1	0.21202	1	0.5915	1	0.45172	1	0.8511	1
del_17p13.2	64 (40%)	96	6.9999e-05	0.0155	0.00045	0.0958	0.01283	1	0.0052999	0.975	0.02413	1	0.0070699	1	0.00213	0.43	0.01937	1
del_17q11.2	42 (26%)	118	9.9999e-06	0.0024	0.00335	0.64	0.02225	1	0.00254	0.505	0.092389	1	0.068209	1	0.00251	0.502	0.0321	1
del_22q13.31	64 (40%)	96	9.9999e-06	0.0024	0.0096199	1	0.00312	0.608	0.00018	0.0391	0.00155	0.316	0.0072999	1	0.00467	0.873	0.00069999	0.146
del_xp21.1	46 (29%)	114	0.00263	0.521	0.0056899	1	0.0323	1	0.00313	0.608	0.00061999	0.13	0.04174	1	0.0495	1	0.01333	1