Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nMutated (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
SPOP	26 (10%)	235	2e-05	0.00712	9.9999e-06	0.0036	0.33421	1	0.2831	1	9.9999e-06	0.0036	9.9999e-06	0.0036	0.26647	1	0.36466	1	0.46145	1	0.37443	1
TP53	23 (9%)	238	9.9999e-06	0.0036	0.27264	1	0.0073699	1	0.0063599	1	0.01005	1	0.00055999	0.198	0.73106	1	0.02013	1	0.24709	1	0.29588	1
PTEN	13 (5%)	248	0.50537	1	0.28277	1	0.1978	1	0.30293	1	0.11365	1	0.04504	1	0.16087	1	0.30093	1	0.0098499	1	0.11972	1
CTNNB1	9 (3%)	252	0.34466	1	0.04223	1	0.04061	1	0.03946	1	0.04921	1	0.25064	1	0.45727	1	0.15754	1	0.091649	1	0.16685	1
TCEB3	4 (2%)	257	0.34055	1	0.4595	1	0.11699	1	0.63586	1	0.33174	1	0.84207	1	0.2292	1	0.52136	1	0.25454	1	0.24353	1
FOXA1	12 (5%)	249	0.0050199	1	0.00013	0.0461	1	1	0.49443	1	0.00095999	0.339	0.01716	1	0.66136	1	0.03682	1	0.060759	1	0.4727	1
BRAF	6 (2%)	255	0.50419	1	0.11458	1	0.83398	1	1	1	0.0092399	1	0.87527	1	0.21638	1	0.8608	1	0.50979	1	0.61285	1
PIK3CA	9 (3%)	252	0.43802	1	0.00335	1	0.04056	1	0.03905	1	0.01228	1	0.01791	1	0.56232	1	0.18166	1	0.21789	1	0.23787	1
IDH1	4 (2%)	257	0.1065	1	0.0064199	1	0.061819	1	0.052539	1	0.0096599	1	0.03618	1	0.03831	1	0.01849	1	0.83425	1	0.053569	1
FAM47C	8 (3%)	253	0.52388	1	0.17403	1	1	1	1	1	0.74213	1	0.54461	1	0.02858	1	0.80601	1	0.13756	1	0.38249	1
TP53BP1	5 (2%)	256	0.44565	1	0.02361	1	0.12049	1	0.15012	1	0.0263	1	0.13112	1	0.87413	1	0.33434	1	0.74204	1	0.30752	1
CNTNAP1	5 (2%)	256	0.10676	1	0.0242	1	NA	NA	NA	NA	0.074889	1	0.27433	1	0.53535	1	0.71882	1	0.74247	1	0.64198	1
MLLT10	4 (2%)	257	0.22772	1	0.14902	1	0.56031	1	0.68722	1	1	1	0.69508	1	0.15119	1	0.39363	1	0.25411	1	0.16795	1
ZMYM3	6 (2%)	255	0.42128	1	0.13851	1	0.44596	1	0.38852	1	0.16585	1	0.03053	1	0.077649	1	0.1306	1	0.01057	1	0.068409	1
SMG7	4 (2%)	257	0.79184	1	0.68451	1	1	1	1	1	0.0095999	1	0.55261	1	0.53393	1	0.31392	1	0.19505	1	0.93999	1
EDC4	3 (1%)	258	0.059719	1	0.02326	1	NA	NA	NA	NA	1	1	0.77379	1	0.28704	1	0.29509	1	0.061239	1	0.37561	1
ZNF709	4 (2%)	257	0.6235	1	1	1	0.45161	1	0.3886	1	1	1	0.12443	1	0.55601	1	0.66838	1	0.1426	1	0.5841	1
CDK12	7 (3%)	254	0.02	1	0.29898	1	0.04053	1	0.03917	1	0.28848	1	0.19428	1	0.46996	1	0.16144	1	0.38826	1	0.34644	1
RPTN	6 (2%)	255	0.33908	1	0.4498	1	0.11662	1	0.11409	1	0.44714	1	0.87502	1	0.60468	1	0.57135	1	0.29243	1	0.45049	1
TNRC18	4 (2%)	257	0.060499	1	1	1	NA	NA	NA	NA	0.69128	1	0.12314	1	0.63991	1	1	1	0.19697	1	0.45815	1
MED15	5 (2%)	256	0.5531	1	0.03545	1	0.44273	1	0.7311	1	0.45293	1	0.87112	1	0.55248	1	0.84993	1	0.53493	1	0.71394	1
NKX3-1	5 (2%)	256	0.62206	1	0.63568	1	0.02873	1	0.04979	1	0.86782	1	1	1	0.0061399	1	0.26144	1	0.01335	1	0.0089599	1
KDM6A	6 (2%)	255	0.092999	1	0.188	1	0.83325	1	0.68914	1	0.29087	1	0.37591	1	0.76668	1	0.0119	1	0.58408	1	0.67292	1
RNF31	4 (2%)	257	0.74355	1	0.20617	1	0.67633	1	0.56102	1	0.30589	1	0.2101	1	0.64086	1	0.1742	1	0.196	1	0.45734	1
ESCO1	4 (2%)	257	0.62182	1	0.83717	1	0.47414	1	0.37846	1	0.21242	1	0.078539	1	0.14868	1	0.3944	1	1	1	0.11181	1
LMOD2	3 (1%)	258	0.74448	1	0.63793	1	NA	NA	NA	NA	1	1	1	1	0.21135	1	0.76665	1	0.78087	1	0.25587	1
FAM120B	3 (1%)	258	0.34098	1	1	1	NA	NA	NA	NA	0.41092	1	0.53932	1	0.28893	1	0.29275	1	0.062119	1	0.37726	1
CLEC1A	4 (2%)	257	0.6276	1	0.45955	1	NA	NA	NA	NA	0.21279	1	0.84361	1	0.53269	1	0.52267	1	0.45723	1	0.55488	1
ITGA2B	3 (1%)	258	0.74444	1	1	1	0.78037	1	0.77888	1	0.41571	1	0.53792	1	0.34677	1	0.40808	1	1	1	0.4472	1
RNF17	3 (1%)	258	0.33787	1	0.77789	1	0.01566	1	0.02465	1	0.11035	1	0.31817	1	0.83102	1	0.58686	1	1	1	0.057959	1
RP1L1	7 (3%)	254	1	1	0.89491	1	0.44445	1	0.39028	1	0.89282	1	0.70404	1	0.077509	1	0.88303	1	0.03862	1	0.070739	1
EOMES	4 (2%)	257	0.62512	1	0.68612	1	0.78367	1	0.78027	1	0.39229	1	0.33152	1	0.0056599	1	0.058999	1	1	1	0.00346	1
MTF1	3 (1%)	258	0.74252	1	0.39152	1	NA	NA	NA	NA	0.20745	1	0.10965	1	0.053509	1	0.03958	1	1	1	0.00355	1
NTM	5 (2%)	256	1	1	0.38614	1	0.12195	1	0.3292	1	0.38056	1	0.16667	1	0.68161	1	0.72003	1	1	1	0.40379	1
FNBP4	3 (1%)	258	0.33776	1	0.28904	1	NA	NA	NA	NA	0.41184	1	0.77549	1	0.3491	1	0.41022	1	0.37273	1	0.04535	1
CDKN1B	4 (2%)	257	0.79317	1	0.10457	1	0.24231	1	0.31016	1	0.16275	1	0.55063	1	0.74262	1	0.13031	1	0.6823	1	0.20455	1
EIF2AK3	4 (2%)	257	1	1	0.26742	1	NA	NA	NA	NA	0.55273	1	0.69381	1	0.38764	1	1	1	0.38185	1	0.64341	1
LARP1	3 (1%)	258	0.74219	1	0.38823	1	NA	NA	NA	NA	0.77727	1	0.2116	1	0.16335	1	0.12364	1	0.49212	1	0.63741	1