Clinical Features AGE PATHOLOGY.T.STAGE PATHOLOGY.N.STAGE HISTOLOGICAL.TYPE COMPLETENESS.OF.RESECTION NUMBER.OF.LYMPH.NODES GLEASON_SCORE_COMBINED GLEASON_SCORE_PRIMARY GLEASON_SCORE_SECONDARY GLEASON_SCORE PSA_RESULT_PREOP PSA_VALUE RACE nCNV (%) nWild-Type Wilcoxon-test_P Wilcoxon-test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Wilcoxon-test_P Wilcoxon-test_Q Wilcoxon-test_P Wilcoxon-test_Q Wilcoxon-test_P Wilcoxon-test_Q Wilcoxon-test_P Wilcoxon-test_Q Wilcoxon-test_P Wilcoxon-test_Q Wilcoxon-test_P Wilcoxon-test_Q Wilcoxon-test_P Wilcoxon-test_Q Fisher's exact test_P Fisher's exact test_Q 1p gain 7 (3%) 264 0.3976 1 0.0091599 1 0.49585 1 1 1 0.69692 1 0.68063 1 0.027213 1 0.02092 1 0.5506 1 0.0043596 1 0.019234 1 0.21533 1 1 1 1q gain 13 (5%) 258 0.76331 1 0.02087 1 0.62241 1 0.21939 1 0.66117 1 0.46448 1 0.0085527 1 0.00060693 0.463 0.99507 1 0.0027939 1 0.052969 1 0.95842 1 1 1 2p gain 4 (1%) 267 0.28299 1 0.40645 1 1 1 1 1 0.59102 1 NA NA 0.21231 1 0.57456 1 0.55658 1 0.71639 1 0.92262 1 NA NA NA NA 2q gain 3 (1%) 268 0.055359 1 0.63008 1 1 1 1 1 NA NA NA NA 0.10416 1 0.24317 1 0.65247 1 0.52712 1 0.97023 1 NA NA NA NA 3p gain 17 (6%) 254 0.016241 1 0.03792 1 0.68235 1 1 1 0.8693 1 0.87223 1 0.0017691 1 0.0099826 1 0.10681 1 8.7792e-05 0.0694 0.31956 1 0.14505 1 0.52401 1 3q gain 24 (9%) 247 0.01289 1 0.00203 1 0.71981 1 1 1 0.91296 1 0.70568 1 0.0027694 1 0.00097795 0.739 0.44848 1 0.00033491 0.259 0.042725 1 0.22658 1 0.63587 1 4p gain 4 (1%) 267 0.28887 1 0.64968 1 1 1 1 1 0.63239 1 0.48963 1 0.21231 1 0.91527 1 0.14211 1 0.26428 1 0.59541 1 0.15956 1 1 1 4q gain 3 (1%) 268 0.49497 1 1 1 1 1 1 1 1 1 0.55192 1 0.69773 1 0.65094 1 0.49802 1 0.78349 1 0.69243 1 0.31395 1 NA NA 5p gain 5 (2%) 266 0.20786 1 0.11141 1 0.36517 1 1 1 0.43567 1 0.39483 1 0.003794 1 0.0085334 1 0.48171 1 0.00054934 0.421 0.16813 1 0.47074 1 NA NA 7p gain 43 (16%) 228 0.14469 1 0.40923 1 0.54894 1 1 1 0.17633 1 0.44949 1 0.088593 1 0.33206 1 0.073289 1 0.10338 1 0.4917 1 0.82697 1 1 1 7q gain 41 (15%) 230 0.26979 1 0.53587 1 1 1 1 1 0.21515 1 0.68545 1 0.13762 1 0.3318 1 0.14329 1 0.15341 1 0.54292 1 0.50985 1 1 1 8p gain 33 (12%) 238 0.20317 1 0.23458 1 0.75268 1 1 1 0.66832 1 0.75679 1 0.00011434 0.0901 0.0057562 1 0.032266 1 0.00046809 0.359 0.16044 1 0.45116 1 0.65903 1 8q gain 53 (20%) 218 0.45401 1 0.12443 1 1 1 1 1 1 1 0.80663 1 8.6282e-05 0.0683 9.6315e-05 0.076 0.23837 1 0.00094442 0.715 0.43869 1 0.29125 1 0.73124 1 9p gain 9 (3%) 262 0.17878 1 0.30518 1 0.041936 1 1 1 1 1 0.015142 1 0.15923 1 0.1507 1 0.90415 1 0.022798 1 0.013879 1 0.94418 1 0.34662 1 9q gain 20 (7%) 251 0.13566 1 0.01462 1 0.0061015 1 0.32044 1 0.69948 1 0.0013925 1 0.0002081 0.162 7.0829e-05 0.0562 0.52104 1 0.00028476 0.221 0.0586 1 0.92913 1 0.45946 1 10p gain 6 (2%) 265 0.37889 1 0.72115 1 1 1 1 1 0.16626 1 0.43784 1 0.44993 1 0.51796 1 0.12692 1 0.089211 1 0.59009 1 0.51541 1 1 1 10q gain 7 (3%) 264 0.31053 1 0.51642 1 0.49585 1 1 1 0.14214 1 0.55481 1 0.56384 1 0.90012 1 0.70577 1 0.15114 1 0.29208 1 0.12319 1 1 1 11p gain 7 (3%) 264 0.95069 1 0.04311 1 0.16435 1 1 1 0.7373 1 0.15165 1 0.075315 1 0.0079241 1 0.5506 1 0.024108 1 0.60864 1 0.84545 1 0.26147 1 11q gain 8 (3%) 263 0.84743 1 0.02938 1 0.20515 1 1 1 1 1 0.22259 1 0.032234 1 0.0043824 1 0.48401 1 0.010757 1 0.49907 1 0.51023 1 0.26269 1 12q gain 3 (1%) 268 0.4762 1 0.28947 1 0.20238 1 1 1 0.22001 1 NA NA 0.10416 1 0.023161 1 0.57851 1 0.13353 1 0.020078 1 NA NA NA NA 14q gain 4 (1%) 267 0.049408 1 1 1 1 1 1 1 0.32803 1 0.55192 1 0.020332 1 0.013267 1 0.69599 1 0.02928 1 0.95352 1 NA NA NA NA 15q gain 3 (1%) 268 0.73859 1 0.63526 1 1 1 1 1 0.59081 1 0.55192 1 0.69773 1 0.52039 1 0.7427 1 0.13353 1 0.25817 1 NA NA NA NA 16p gain 11 (4%) 260 0.068548 1 0.0076999 1 1 1 1 1 1 1 0.99609 1 0.0035173 1 0.0021777 1 0.16787 1 0.0062257 1 0.78327 1 0.11387 1 1 1 16q gain 5 (2%) 266 0.05433 1 0.42759 1 1 1 1 1 0.65705 1 0.55192 1 0.23383 1 0.069548 1 0.9374 1 0.28391 1 0.49716 1 NA NA 1 1 17q gain 4 (1%) 267 0.50689 1 0.18703 1 0.057377 1 1 1 0.63328 1 0.010915 1 0.31576 1 0.28733 1 0.93016 1 0.26428 1 0.44286 1 0.63724 1 NA NA 18p gain 10 (4%) 261 0.221 1 0.03349 1 0.041936 1 1 1 0.62444 1 0.015142 1 0.054825 1 0.28137 1 0.31403 1 0.017108 1 0.49033 1 0.83456 1 1 1 18q gain 4 (1%) 267 0.18331 1 0.18877 1 1 1 1 1 1 1 0.48963 1 0.13589 1 0.28733 1 0.2038 1 0.16721 1 0.38199 1 0.62855 1 NA NA 19q gain 3 (1%) 268 0.85422 1 0.02811 1 0.28822 1 1 1 0.5893 1 0.23745 1 0.00098552 0.744 0.023161 1 0.0023757 1 0.0014101 1 0.27586 1 0.43137 1 1 1 20p gain 4 (1%) 267 0.19763 1 0.64843 1 1 1 1 1 0.58942 1 0.48963 1 0.010342 1 0.28733 1 0.0046006 1 0.090735 1 0.34113 1 0.59154 1 NA NA 20q gain 7 (3%) 264 0.16906 1 0.04403 1 1 1 1 1 0.30116 1 0.35525 1 0.11449 1 0.04958 1 0.5506 1 0.09464 1 0.80365 1 1 1 1 1 21q gain 5 (2%) 266 0.15397 1 1 1 1 1 1 1 1 1 0.43784 1 0.031397 1 0.023497 1 0.2548 1 0.042924 1 0.042247 1 0.56475 1 1 1 1p loss 6 (2%) 265 0.9066 1 0.72006 1 1 1 1 1 0.69464 1 0.39363 1 0.33931 1 0.088768 1 0.94274 1 0.40763 1 0.40319 1 0.11626 1 1 1 2p loss 3 (1%) 268 0.3259 1 1 1 1 1 1 1 1 1 0.55192 1 0.50309 1 0.52039 1 0.65247 1 0.56187 1 0.72295 1 0.25312 1 NA NA 2q loss 4 (1%) 267 0.68425 1 0.65283 1 1 1 1 1 1 1 0.48963 1 0.21231 1 0.28733 1 0.55658 1 0.26428 1 0.47826 1 0.25312 1 NA NA 4p loss 8 (3%) 263 0.82931 1 0.38374 1 0.0052961 1 0.14012 1 0.03273 1 0.00020649 0.161 2.1654e-05 0.0174 0.00041323 0.319 0.01467 1 5.0149e-05 0.0398 0.80502 1 0.73629 1 1 1 4q loss 6 (2%) 265 0.93836 1 0.71888 1 0.49585 1 0.10666 1 0.22936 1 0.68063 1 0.00068987 0.525 0.0042416 1 0.054303 1 0.0012576 0.947 0.75417 1 0.38878 1 NA NA 5p loss 4 (1%) 267 0.67709 1 0.01892 1 0.057377 1 1 1 0.32988 1 0.016074 1 0.0070201 1 0.0033736 1 0.2038 1 0.0097491 1 0.33622 1 0.98378 1 1 1 5q loss 8 (3%) 263 0.91876 1 0.02997 1 0.028196 1 1 1 0.26457 1 0.006459 1 4.5662e-06 0.00369 2.9182e-05 0.0233 0.14227 1 5.7648e-06 0.00465 0.20864 1 0.9448 1 1 1 6p loss 9 (3%) 262 0.31696 1 0.082029 1 0.058483 1 1 1 0.54101 1 0.023154 1 0.0043468 1 0.0007505 0.57 0.7382 1 0.0004199 0.323 0.23928 1 0.54835 1 0.30357 1 6q loss 16 (6%) 255 0.77587 1 0.1521 1 0.07544 1 1 1 0.71754 1 0.045391 1 0.00025586 0.199 0.0036631 1 0.044594 1 4.9479e-05 0.0393 0.52786 1 0.22154 1 0.12584 1 8p loss 84 (31%) 187 0.6412 1 0.00145 1 0.16697 1 0.64693 1 0.57406 1 0.11229 1 0.77114 1 0.013579 1 0.03962 1 0.87533 1 0.14285 1 0.21234 1 0.16139 1 8q loss 12 (4%) 259 0.27356 1 0.00033 0.256 0.0043321 1 1 1 0.10378 1 0.00019464 0.152 0.012991 1 0.032184 1 0.15029 1 0.014955 1 0.4264 1 0.017156 1 1 1 9p loss 12 (4%) 259 0.8682 1 0.087049 1 0.12323 1 1 1 0.51334 1 0.11154 1 0.0023104 1 0.032184 1 0.018537 1 0.0028488 1 0.58198 1 0.55931 1 1 1 9q loss 5 (2%) 266 0.20891 1 1 1 1 1 1 1 1 1 0.43784 1 0.031397 1 0.58297 1 0.0066067 1 0.0029077 1 0.33831 1 0.9126 1 1 1 10p loss 17 (6%) 254 0.28107 1 0.00262 1 0.060994 1 1 1 0.45502 1 0.04306 1 0.0011629 0.877 0.00041728 0.321 0.23998 1 0.00042353 0.325 0.64506 1 0.79653 1 1 1 10q loss 21 (8%) 250 0.98243 1 0.066109 1 0.0082726 1 1 1 0.27877 1 0.003445 1 1.2564e-05 0.0101 0.00054984 0.421 0.011627 1 3.1432e-06 0.00254 0.7117 1 0.83935 1 0.58628 1 12p loss 22 (8%) 249 0.76171 1 0.36757 1 0.018146 1 1 1 1 1 0.01147 1 0.027727 1 0.0013537 1 0.77411 1 0.0243 1 0.35438 1 0.29069 1 1 1 12q loss 10 (4%) 261 0.94193 1 0.25995 1 0.07769 1 1 1 1 1 0.061451 1 0.02052 1 0.0095036 1 0.3785 1 0.0082081 1 0.56472 1 0.97297 1 1 1 13q loss 34 (13%) 237 0.098961 1 0.22593 1 0.029926 1 1 1 0.58114 1 0.025246 1 0.00017713 0.139 0.0060533 1 0.028844 1 3.4126e-05 0.0272 0.70764 1 0.49543 1 0.43886 1 14q loss 10 (4%) 261 0.28282 1 0.21721 1 0.2894 1 1 1 0.58916 1 0.33667 1 0.0044142 1 0.0095036 1 0.14885 1 0.0082081 1 0.1602 1 0.36437 1 1 1 15q loss 15 (6%) 256 0.35764 1 0.0083399 1 0.0094151 1 1 1 1 1 0.0015166 1 8.7055e-05 0.0689 2.4638e-05 0.0197 0.29926 1 0.00014836 0.117 0.58354 1 0.26241 1 1 1 16p loss 19 (7%) 252 0.62935 1 1 1 0.69963 1 1 1 0.4997 1 0.9449 1 0.15841 1 0.11684 1 0.73794 1 0.073324 1 0.79013 1 0.57852 1 1 1 16q loss 50 (18%) 221 0.98303 1 0.24484 1 0.11789 1 1 1 0.96526 1 0.13472 1 0.00193 1 0.00078183 0.593 0.3513 1 0.00089648 0.68 0.059857 1 0.61808 1 1 1 17p loss 35 (13%) 236 0.75638 1 0.04533 1 0.059494 1 1 1 0.49556 1 0.034906 1 0.00014015 0.11 0.0003412 0.263 0.26889 1 0.00015339 0.12 0.5082 1 0.056756 1 0.70353 1 17q loss 7 (3%) 264 0.41295 1 0.52053 1 0.5511 1 1 1 0.17331 1 0.80328 1 0.027213 1 0.04958 1 0.20555 1 0.0411 1 0.94897 1 0.80428 1 1 1 18p loss 35 (13%) 236 0.3018 1 0.2151 1 0.12308 1 0.50191 1 0.20332 1 0.10428 1 0.00014992 0.118 0.0066792 1 0.010894 1 2.8106e-05 0.0224 0.76911 1 0.84266 1 0.69836 1 18q loss 49 (18%) 222 0.86707 1 0.22281 1 0.0048438 1 1 1 0.03523 1 0.0020975 1 2.6203e-05 0.0209 0.019975 1 0.00056094 0.429 6.2891e-06 0.00506 0.3716 1 0.72871 1 0.75671 1 19p loss 7 (3%) 264 0.29316 1 0.51816 1 0.5511 1 1 1 0.37623 1 0.80328 1 0.11449 1 0.053941 1 0.81993 1 0.15114 1 0.11459 1 0.37692 1 1 1 19q loss 7 (3%) 264 0.29316 1 0.51783 1 0.5511 1 1 1 0.37784 1 0.80328 1 0.11449 1 0.053941 1 0.81993 1 0.15114 1 0.11459 1 0.37692 1 1 1 20p loss 9 (3%) 262 0.50701 1 0.02256 1 0.5511 1 1 1 1 1 0.72313 1 0.75442 1 0.037386 1 0.057792 1 0.87454 1 0.033606 1 0.99537 1 0.34775 1 20q loss 6 (2%) 265 0.10962 1 0.068439 1 1 1 1 1 0.69543 1 0.43784 1 0.10207 1 0.0042416 1 0.42772 1 0.13821 1 0.2324 1 0.66949 1 1 1 21q loss 9 (3%) 262 0.70481 1 0.083269 1 0.0052961 1 1 1 1 1 0.00023822 0.185 0.0030633 1 0.0070626 1 0.2895 1 0.0058132 1 0.024652 1 0.55195 1 1 1 22q loss 20 (7%) 251 0.97365 1 0.01368 1 0.0082726 1 1 1 0.27662 1 0.0022148 1 5.5848e-06 0.00451 1.0093e-05 0.00811 0.046307 1 2.2383e-05 0.0179 0.46967 1 0.14349 1 0.49641 1 xq loss 13 (5%) 258 0.90499 1 0.42213 1 0.037133 1 0.21939 1 1 1 0.012397 1 0.00021338 0.166 0.00060693 0.463 0.13465 1 0.0003312 0.256 0.36668 1 0.11968 1 0.34767 1