Clinical Features	AGE		PATHOLOGY.T.STAGE		PATHOLOGY.N.STAGE		HISTOLOGICAL.TYPE		COMPLETENESS.OF.RESECTION		NUMBER.OF.LYMPH.NODES		GLEASON_SCORE_COMBINED		GLEASON_SCORE_PRIMARY		GLEASON_SCORE_SECONDARY		GLEASON_SCORE		PSA_RESULT_PREOP		PSA_VALUE		RACE	
	nCNV (%)	nWild-Type	Wilcoxon-test_P	Wilcoxon-test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Wilcoxon-test_P	Wilcoxon-test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1q21.3	21 (8%)	250	0.32679	1	0.01068	1	0.43601	1	0.049693	1	1	1	0.40083	1	2.6917e-05	0.0212	0.00021269	0.166	0.051361	1	1.3058e-05	0.0103	0.14569	1	0.1818	1	1	1
amp_3q21.3	32 (12%)	239	0.019248	1	0.0079699	1	0.53751	1	1	1	0.02587	1	0.60272	1	0.0054508	1	0.002838	1	0.59932	1	0.00030095	0.233	0.013764	1	0.38787	1	0.65936	1
amp_3q26.2	40 (15%)	231	0.089047	1	0.02097	1	0.56081	1	0.5529	1	0.27718	1	0.50654	1	0.011288	1	0.0032296	1	0.67748	1	0.0016575	1	0.022477	1	0.32607	1	1	1
amp_4q13.3	5 (2%)	266	0.17243	1	0.14576	1	0.43411	1	1	1	0.43361	1	0.54429	1	0.040233	1	0.069548	1	0.18835	1	0.055806	1	0.11715	1	0.44957	1	1	1
amp_5q33.3	8 (3%)	263	0.052629	1	0.03045	1	0.20515	1	0.14012	1	1	1	0.16582	1	0.075079	1	0.027738	1	0.83106	1	0.0035017	1	0.95217	1	0.62714	1	0.21482	1
amp_7p14.3	47 (17%)	224	0.25513	1	0.1657	1	0.57764	1	0.59108	1	0.074659	1	0.63105	1	0.075446	1	0.15532	1	0.15591	1	0.094106	1	0.10363	1	0.80211	1	1	1
amp_8p11.23	26 (10%)	245	0.087016	1	0.29755	1	0.71981	1	1	1	0.91938	1	0.70568	1	0.0031453	1	0.0027258	1	0.24108	1	0.0075205	1	0.27099	1	0.52599	1	1	1
amp_8q24.21	64 (24%)	207	0.23373	1	0.0050599	1	0.090018	1	1	1	0.71566	1	0.085922	1	8.7843e-07	0.000702	2.8772e-06	0.00229	0.052769	1	1.5579e-05	0.0123	0.12957	1	0.05119	1	0.81254	1
amp_9q34.11	25 (9%)	246	0.28636	1	0.0074699	1	0.00088659	0.673	0.38598	1	0.77472	1	8.7575e-05	0.0686	4.5547e-07	0.000365	3.4026e-06	0.0027	0.065128	1	1.0238e-06	0.000816	0.10386	1	0.14728	1	0.55481	1
amp_11q13.2	14 (5%)	257	0.087434	1	0.0023	1	0.037133	1	0.23452	1	1	1	0.012689	1	0.0035885	1	0.00037076	0.286	0.90971	1	0.0020402	1	0.17429	1	0.54055	1	0.34917	1
amp_12q23.1	10 (4%)	261	0.97509	1	0.21719	1	0.0088419	1	1	1	0.78941	1	0.0011077	0.835	0.0017078	1	0.0095036	1	0.3785	1	0.00065945	0.503	0.0026686	1	0.57756	1	1	1
amp_13q12.11	12 (4%)	259	0.00313	1	0.14822	1	0.2894	1	0.20402	1	0.80921	1	0.3115	1	0.070702	1	0.0074618	1	0.69683	1	0.24328	1	0.4454	1	0.38256	1	0.30441	1
amp_14q21.1	14 (5%)	257	0.015444	1	0.55433	1	1	1	0.23452	1	1	1	0.82711	1	0.0037116	1	0.080628	1	0.1207	1	0.00025676	0.199	0.33627	1	0.58771	1	1	1
amp_15q11.2	5 (2%)	266	0.36302	1	0.70669	1	1	1	1	1	0.6567	1	0.48963	1	0.99169	1	0.15938	1	0.13911	1	0.40417	1	0.88923	1	0.77152	1	NA	NA
amp_16q11.2	13 (5%)	258	0.043781	1	0.02041	1	1	1	1	1	0.37459	1	0.82711	1	0.0044909	1	0.0099493	1	0.2667	1	0.0056494	1	0.1008	1	0.10552	1	1	1
amp_17q23.2	9 (3%)	262	0.30031	1	0.30631	1	1	1	0.15646	1	0.36701	1	0.93745	1	0.39543	1	0.62666	1	0.64054	1	0.11909	1	0.32569	1	0.46301	1	1	1
amp_18q21.31	6 (2%)	265	0.047567	1	0.051479	1	1	1	0.10666	1	0.30266	1	0.39363	1	0.0014052	1	0.19706	1	0.0081525	1	0.0026265	1	0.21036	1	0.51773	1	1	1
amp_19q13.43	5 (2%)	266	0.18563	1	0.01344	1	1	1	0.089548	1	1	1	0.43784	1	0.053195	1	0.15938	1	0.18835	1	0.0061447	1	0.21429	1	0.4227	1	1	1
amp_20q13.2	14 (5%)	257	0.055299	1	0.00043	0.33	0.37258	1	1	1	0.2004	1	0.18251	1	0.0097938	1	0.0021815	1	0.62736	1	0.011755	1	0.2084	1	0.26814	1	1	1
amp_xp22.2	8 (3%)	263	0.65291	1	0.12561	1	0.60052	1	0.14012	1	0.73556	1	0.83554	1	0.10825	1	0.011566	1	0.37079	1	0.16012	1	0.040952	1	0.50019	1	0.16557	1
amp_xp22.11	9 (3%)	262	0.85234	1	0.30577	1	1	1	0.0093365	1	1	1	0.93745	1	0.15923	1	0.1507	1	0.99412	1	0.22934	1	0.79874	1	0.94418	1	0.26196	1
amp_xp22.11	9 (3%)	262	0.38947	1	0.30611	1	1	1	0.0093365	1	0.76217	1	0.93745	1	0.15923	1	0.037386	1	0.56192	1	0.48689	1	0.11412	1	0.53809	1	0.21578	1
amp_xp21.1	8 (3%)	263	0.18256	1	0.12624	1	0.60052	1	0.0073168	1	0.76473	1	0.91321	1	0.30984	1	0.2458	1	0.89856	1	0.16012	1	0.2928	1	0.19577	1	0.0077599	1
amp_xq21.1	7 (3%)	264	0.82384	1	0.51771	1	0.5511	1	1	1	0.5001	1	0.72313	1	0.56384	1	0.61171	1	0.81993	1	0.53057	1	0.27442	1	0.38599	1	0.34448	1
amp_xq21.1	5 (2%)	266	0.4346	1	0.42846	1	0.08941	1	1	1	0.65714	1	0.029926	1	0.33111	1	0.58297	1	0.48171	1	0.40417	1	0.09296	1	0.17197	1	0.02737	1
amp_xq21.31	5 (2%)	266	0.26541	1	1	1	1	1	1	1	0.65894	1	0.43784	1	0.23383	1	0.023497	1	0.79854	1	0.69155	1	0.66129	1	0.13465	1	0.26251	1
amp_xq25	4 (1%)	267	0.10039	1	0.65138	1	1	1	1	1	0.63268	1	0.48963	1	0.67571	1	0.28733	1	0.77577	1	0.75058	1	0.99483	1	NA	NA	0.2156	1
amp_xq25	6 (2%)	265	0.77336	1	0.71949	1	0.49585	1	1	1	0.46906	1	0.68063	1	0.33931	1	0.89474	1	0.17233	1	0.54121	1	0.79072	1	0.39379	1	0.01885	1
amp_xq27.1	9 (3%)	262	0.096506	1	1	1	1	1	1	1	0.76582	1	0.32153	1	0.79434	1	0.62666	1	0.47603	1	0.68553	1	0.62699	1	0.35652	1	0.42402	1
del_1p31.3	33 (12%)	238	0.42271	1	0.15311	1	1	1	1	1	0.13249	1	0.93824	1	0.0071851	1	0.085507	1	0.032266	1	0.017949	1	0.56121	1	0.062694	1	0.19886	1
del_1p22.1	21 (8%)	250	0.74229	1	0.57937	1	0.43601	1	1	1	0.77452	1	0.41256	1	0.44312	1	0.3645	1	0.74933	1	0.60267	1	0.13243	1	0.34272	1	1	1
del_1q42.2	22 (8%)	249	0.02669	1	0.4148	1	0.26681	1	1	1	0.27903	1	0.25319	1	0.1925	1	0.18945	1	0.85289	1	0.05059	1	0.044994	1	0.28782	1	0.55589	1
del_2p22.1	17 (6%)	254	0.34539	1	0.2009	1	0.0043841	1	1	1	0.33855	1	0.00081883	0.622	0.0066429	1	0.099419	1	0.016848	1	0.013614	1	0.92557	1	0.37496	1	1	1
del_2q22.1	37 (14%)	234	0.00055555	0.424	0.80727	1	1	1	1	1	0.35598	1	0.70099	1	0.33957	1	0.011549	1	0.15492	1	0.32535	1	0.5834	1	0.85754	1	0.41616	1
del_2q22.3	34 (13%)	237	0.0041258	1	0.62379	1	1	1	1	1	0.49387	1	0.88465	1	0.66918	1	0.61363	1	0.3285	1	0.87629	1	0.72349	1	0.97856	1	1	1
del_3p13	43 (16%)	228	0.021993	1	0.73456	1	0.77433	1	0.17968	1	0.14556	1	0.64428	1	0.2846	1	0.57255	1	0.51204	1	0.20003	1	0.38894	1	0.77853	1	1	1
del_3q29	16 (6%)	255	0.17692	1	0.85123	1	0.38932	1	0.26407	1	0.10651	1	0.26987	1	0.47681	1	0.85699	1	0.33689	1	0.61469	1	0.23944	1	0.8969	1	1	1
del_4q28.1	24 (9%)	247	0.028441	1	0.098529	1	0.47628	1	0.3733	1	0.22022	1	0.65071	1	0.083706	1	0.059521	1	0.58109	1	0.058261	1	0.94958	1	0.2922	1	0.29913	1
del_5q11.2	38 (14%)	233	0.32352	1	0.00094999	0.719	2.3888e-05	0.0189	1	1	0.6487	1	7.8818e-07	0.000631	9.7425e-07	0.000777	3.59e-05	0.0283	0.021992	1	7.3594e-06	0.00584	0.00036295	0.28	0.35467	1	0.4383	1
del_5q13.2	37 (14%)	234	0.85931	1	0.00151	1	0.0057178	1	1	1	0.82283	1	0.0024029	1	5.7886e-07	0.000464	6.3052e-05	0.0494	0.010584	1	5.7759e-05	0.0454	0.01275	1	0.21786	1	0.29317	1
del_5q21.1	45 (17%)	226	0.11316	1	0.56658	1	0.16181	1	1	1	1	1	0.14769	1	0.069711	1	0.0026396	1	0.51973	1	0.077622	1	0.20654	1	0.026383	1	0.73294	1
del_6q14.3	85 (31%)	186	0.020938	1	0.32179	1	0.011851	1	0.65037	1	0.070289	1	0.0077331	1	0.00020743	0.162	0.00092068	0.698	0.16096	1	0.00096421	0.729	0.00021304	0.166	0.23416	1	0.5793	1
del_7q31.33	13 (5%)	258	0.43732	1	1	1	0.33163	1	1	1	0.55132	1	0.34468	1	0.62906	1	0.20514	1	0.51627	1	0.77313	1	0.96793	1	0.84834	1	1	1
del_8p21.3	146 (54%)	125	0.40139	1	0.00038	0.293	0.079947	1	1	1	0.86851	1	0.056763	1	0.13825	1	0.0025923	1	0.2784	1	0.35948	1	0.0017635	1	0.13855	1	0.72825	1
del_8p11.21	82 (30%)	189	0.43295	1	0.1991	1	1	1	0.64023	1	0.0059699	1	0.8762	1	0.75337	1	0.2335	1	0.35944	1	0.77252	1	0.088173	1	0.16953	1	0.19147	1
del_9p23	24 (9%)	247	0.69479	1	0.27081	1	0.079881	1	1	1	0.75825	1	0.074488	1	0.011186	1	0.021976	1	0.25785	1	0.042822	1	0.69114	1	0.48381	1	1	1
del_10q23.31	84 (31%)	187	0.8092	1	0.0070699	1	0.011851	1	1	1	0.33254	1	0.012031	1	0.0088212	1	0.0519	1	0.087065	1	0.0031341	1	0.61488	1	0.0024352	1	0.23577	1
del_11p11.2	12 (4%)	259	0.71446	1	0.50887	1	0.099353	1	1	1	0.11698	1	0.057586	1	0.44823	1	0.30799	1	0.90289	1	0.3023	1	0.53853	1	0.64908	1	0.04033	1
del_11q23.2	27 (10%)	244	0.194	1	0.00164	1	0.72762	1	0.41074	1	0.39772	1	0.74836	1	0.033142	1	0.070128	1	0.21791	1	0.022465	1	0.22419	1	0.085811	1	1	1
del_12p13.1	55 (20%)	216	0.92244	1	0.01232	1	0.12038	1	0.26805	1	0.61363	1	0.09075	1	0.0079883	1	0.00020328	0.159	0.93629	1	0.0021386	1	0.030379	1	0.21887	1	1	1
del_12q24.31	20 (7%)	251	0.92823	1	0.21324	1	0.43601	1	0.32044	1	1	1	0.52242	1	0.034099	1	0.1199	1	0.29479	1	0.036524	1	0.69883	1	0.36664	1	1	1
del_13q14.13	116 (43%)	155	0.051381	1	0.35699	1	0.19457	1	0.073181	1	0.02693	1	0.17282	1	0.025637	1	0.043108	1	0.34502	1	0.019245	1	0.42966	1	0.33287	1	0.00389	1
del_13q22.1	89 (33%)	182	0.032413	1	0.068899	1	0.11734	1	0.17554	1	0.2735	1	0.1136	1	0.0039348	1	0.039095	1	0.077928	1	0.00038726	0.298	0.14892	1	0.91056	1	0.00034	0.263
del_15q21.3	30 (11%)	241	0.98278	1	0.058199	1	0.0085689	1	0.44637	1	0.49127	1	0.0027155	1	8.7036e-08	7e-05	2.657e-06	0.00211	0.011435	1	4.0065e-07	0.000322	0.84077	1	0.27928	1	1	1
del_16q22.3	93 (34%)	178	0.11849	1	0.03006	1	0.074992	1	1	1	0.94672	1	0.060244	1	0.0001836	0.144	6.024e-05	0.0473	0.31736	1	0.00028616	0.222	0.13935	1	0.063666	1	0.7193	1
del_16q24.1	105 (39%)	166	0.4633	1	0.0079799	1	0.1249	1	1	1	0.96506	1	0.090576	1	0.00021477	0.167	4.0588e-05	0.0319	0.4185	1	0.00054724	0.419	0.075703	1	0.098166	1	1	1
del_17p13.1	69 (25%)	202	0.50724	1	0.0064399	1	0.014499	1	1	1	0.88376	1	0.010483	1	0.000411	0.316	0.00065596	0.5	0.17686	1	0.00044075	0.338	0.59276	1	0.32619	1	0.82198	1
del_17q21.31	53 (20%)	218	0.80163	1	0.81072	1	1	1	0.58665	1	0.38535	1	0.7027	1	0.86719	1	0.5839	1	0.9354	1	0.88837	1	0.6516	1	0.64042	1	0.76303	1
del_18q22.1	68 (25%)	203	0.74346	1	0.2674	1	0.45832	1	0.60206	1	0.28287	1	0.33133	1	0.010634	1	0.037729	1	0.22173	1	0.012059	1	0.56632	1	0.91792	1	0.13626	1
del_19q13.2	24 (9%)	247	0.094043	1	0.1782	1	0.15046	1	1	1	0.12108	1	0.10599	1	0.00607	1	0.0010508	0.793	0.58109	1	0.0051671	1	0.50142	1	0.3278	1	1	1
del_21q22.2	26 (10%)	245	0.25005	1	0.12853	1	0.010962	1	0.39846	1	0.72977	1	0.0031521	1	0.79968	1	0.9473	1	0.67874	1	0.96539	1	0.85374	1	0.33001	1	0.076539	1
del_21q22.3	77 (28%)	194	0.75894	1	0.02809	1	0.0015422	1	0.62466	1	0.19655	1	0.00077294	0.588	0.16901	1	0.30022	1	0.34557	1	0.27493	1	0.30602	1	0.15973	1	0.079239	1