Clinical Features CN_CNMF METHLYATION_CNMF RPPA_CNMF RPPA_CHIERARCHICAL MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL MIRSEQ_CNMF MIRSEQ_CHIERARCHICAL MIRSEQ_MATURE_CNMF MIRSEQ_MATURE_CHIERARCHICAL nCNV (%) nWild-Type Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q 1p gain 11 (3%) 408 5.9999e-05 0.0404 0.069439 1 0.0399 1 0.33803 1 0.075399 1 0.33155 1 0.14011 1 0.59575 1 0.18161 1 0.11493 1 1q gain 19 (5%) 400 9.9999e-06 0.00722 0.0054099 1 0.02164 1 0.17953 1 0.00306 1 0.071269 1 0.1016 1 0.66582 1 0.071169 1 0.091899 1 2p gain 8 (2%) 411 0.0074599 1 0.10891 1 NA NA NA NA 0.03037 1 0.078269 1 0.2556 1 0.39806 1 0.00291 1 0.24919 1 2q gain 4 (1%) 415 0.0467 1 0.38352 1 NA NA NA NA 0.64819 1 0.78652 1 0.32999 1 0.82619 1 0.02138 1 0.47533 1 3p gain 32 (8%) 387 9.9999e-06 0.00722 0.0084499 1 0.083489 1 0.46503 1 0.00375 1 0.02745 1 0.50972 1 0.13261 1 0.065839 1 0.063299 1 3q gain 45 (11%) 374 9.9999e-06 0.00722 0.03677 1 0.04213 1 0.17965 1 0.00014 0.0932 0.01295 1 0.38842 1 0.28247 1 0.10588 1 0.01283 1 4p gain 8 (2%) 411 0.0069299 1 0.32951 1 NA NA NA NA 0.20645 1 0.89832 1 0.98316 1 1 1 1 1 0.2817 1 4q gain 7 (2%) 412 0.01909 1 0.31533 1 NA NA NA NA 0.22431 1 0.58895 1 0.91874 1 1 1 0.79621 1 0.22033 1 5p gain 17 (4%) 402 9.9999e-06 0.00722 0.070019 1 0.29835 1 0.30764 1 0.01802 1 0.51356 1 0.79281 1 0.17588 1 0.0088999 1 0.00328 1 5q gain 12 (3%) 407 3e-05 0.0204 0.1231 1 NA NA NA NA 0.061169 1 0.30548 1 0.81256 1 0.73546 1 0.35305 1 0.15962 1 6p gain 6 (1%) 413 0.01866 1 0.38147 1 NA NA NA NA 0.063659 1 0.78315 1 0.51177 1 0.27803 1 0.33896 1 0.31854 1 6q gain 3 (1%) 416 0.02541 1 NA NA NA NA NA NA NA NA NA NA 0.77944 1 0.29193 1 0.39204 1 0.77653 1 7p gain 82 (20%) 337 9.9999e-06 0.00722 9.9999e-06 0.00722 0.55697 1 0.72583 1 9.9999e-06 0.00722 0.0058799 1 0.04344 1 0.00125 0.802 0.00487 1 0.01154 1 7q gain 78 (19%) 341 9.9999e-06 0.00722 9.9999e-06 0.00722 0.62006 1 0.71343 1 9.9999e-06 0.00722 0.0080399 1 0.02698 1 0.00162 1 0.0066299 1 0.02769 1 8p gain 54 (13%) 365 9.9999e-06 0.00722 9.9999e-06 0.00722 0.0059299 1 0.0083199 1 9.9999e-06 0.00722 0.00291 1 0.13895 1 0.03506 1 0.00134 0.854 0.13892 1 8q gain 96 (23%) 323 9.9999e-06 0.00722 8.9999e-05 0.0601 0.00216 1 0.0052699 1 9.9999e-06 0.00722 0.00016 0.106 0.00032 0.211 0.00128 0.818 2e-05 0.0137 0.00107 0.691 9p gain 23 (5%) 396 9.9999e-06 0.00722 0.34844 1 0.48358 1 0.17596 1 0.4707 1 0.38147 1 0.25074 1 0.46261 1 0.71325 1 0.2509 1 9q gain 37 (9%) 382 9.9999e-06 0.00722 0.083659 1 0.02608 1 0.01325 1 0.14522 1 0.0322 1 0.12347 1 0.01532 1 0.36643 1 0.096719 1 10p gain 10 (2%) 409 0.01069 1 0.31715 1 0.78501 1 0.77857 1 0.49741 1 0.18268 1 0.067969 1 0.093479 1 0.12278 1 0.28294 1 10q gain 12 (3%) 407 0.00185 1 0.36115 1 0.04014 1 0.03994 1 0.48503 1 0.13416 1 0.30902 1 0.083029 1 0.33315 1 0.24473 1 11p gain 17 (4%) 402 9.9999e-06 0.00722 0.20888 1 0.76843 1 0.66413 1 0.01356 1 0.39865 1 0.83035 1 0.45715 1 0.47449 1 0.12073 1 11q gain 20 (5%) 399 9.9999e-06 0.00722 0.1643 1 0.76771 1 0.66603 1 0.0073899 1 0.24064 1 0.50326 1 0.48913 1 0.40762 1 0.11799 1 12p gain 11 (3%) 408 0.00393 1 0.038 1 NA NA NA NA 0.33171 1 0.24431 1 0.099919 1 0.27243 1 0.082879 1 0.60712 1 12q gain 12 (3%) 407 0.01781 1 0.03652 1 0.46882 1 0.62981 1 0.087739 1 0.49145 1 0.080159 1 0.44887 1 0.21179 1 0.90303 1 13q gain 5 (1%) 414 0.058739 1 0.1144 1 NA NA NA NA 0.39288 1 0.14116 1 0.57725 1 0.12146 1 0.13818 1 0.376 1 14q gain 7 (2%) 412 0.00073999 0.482 0.080439 1 0.78611 1 0.78309 1 0.16995 1 0.24501 1 0.26817 1 0.29273 1 0.56699 1 0.26211 1 15q gain 5 (1%) 414 0.13104 1 1 1 NA NA NA NA 1 1 0.83869 1 0.76092 1 0.71746 1 1 1 0.44754 1 16p gain 23 (5%) 396 5e-05 0.0338 0.33291 1 0.81766 1 0.65941 1 0.27187 1 0.066449 1 0.17335 1 0.0054299 1 0.01007 1 0.071289 1 16q gain 7 (2%) 412 0.26666 1 0.86186 1 0.67659 1 0.55847 1 0.87598 1 0.77342 1 0.33309 1 0.1833 1 0.34779 1 0.9757 1 17p gain 5 (1%) 414 0.060039 1 NA NA NA NA NA NA NA NA NA NA 0.65323 1 0.4838 1 0.10984 1 0.15783 1 17q gain 8 (2%) 411 0.00192 1 0.82802 1 0.47238 1 0.78026 1 0.38079 1 1 1 0.89229 1 0.35917 1 0.20468 1 0.2662 1 18p gain 13 (3%) 406 0.00084999 0.553 1 1 0.89863 1 0.66302 1 0.20862 1 0.93465 1 0.84098 1 0.92989 1 0.77441 1 0.45865 1 18q gain 7 (2%) 412 0.050049 1 1 1 1 1 0.49122 1 0.22356 1 0.77763 1 0.53143 1 0.76848 1 0.56705 1 0.21845 1 19p gain 8 (2%) 411 5e-05 0.0338 0.31437 1 NA NA NA NA 0.28939 1 0.34788 1 0.16065 1 0.072519 1 0.39916 1 0.056279 1 19q gain 9 (2%) 410 2e-05 0.0137 0.32982 1 0.78105 1 0.78038 1 0.18505 1 0.20988 1 0.12806 1 0.051879 1 0.23174 1 0.02164 1 20p gain 17 (4%) 402 2e-05 0.0137 0.02189 1 0.37141 1 0.18651 1 0.01881 1 0.03468 1 0.074999 1 0.33242 1 0.00033 0.217 0.01522 1 20q gain 18 (4%) 401 9.9999e-06 0.00722 0.070529 1 0.61902 1 0.88761 1 0.21222 1 0.16514 1 0.3125 1 0.28378 1 0.0218 1 0.073259 1 21q gain 16 (4%) 403 9.9999e-06 0.00722 0.069359 1 0.4423 1 0.4488 1 0.0324 1 0.10778 1 0.059289 1 0.01608 1 0.01912 1 0.01592 1 xq gain 4 (1%) 415 0.01071 1 0.38232 1 NA NA NA NA 0.64673 1 0.6331 1 0.17733 1 0.82743 1 0.02152 1 0.51809 1 1p loss 16 (4%) 403 9.9999e-06 0.00722 0.070009 1 0.25525 1 0.22838 1 0.03953 1 0.052499 1 0.058579 1 0.01785 1 0.03018 1 0.052109 1 1q loss 4 (1%) 415 0.093269 1 NA NA NA NA NA NA 0.6477 1 0.63097 1 0.083699 1 0.12427 1 0.071149 1 0.077669 1 2p loss 9 (2%) 410 0.00268 1 0.22021 1 NA NA NA NA 0.20459 1 0.01333 1 0.42195 1 0.73234 1 0.29708 1 0.27065 1 2q loss 12 (3%) 407 0.00025 0.165 0.35545 1 NA NA NA NA 0.36818 1 0.067279 1 0.23101 1 0.73789 1 0.81318 1 0.082549 1 3p loss 7 (2%) 412 0.43649 1 0.15829 1 NA NA NA NA 0.13581 1 0.16023 1 0.072019 1 0.47113 1 0.02081 1 0.18639 1 3q loss 4 (1%) 415 0.63105 1 0.63378 1 NA NA NA NA 0.77779 1 0.6303 1 0.03176 1 0.076809 1 0.39146 1 0.02983 1 4p loss 15 (4%) 404 5.9999e-05 0.0404 0.25806 1 0.29713 1 0.30726 1 0.03433 1 0.074289 1 0.0057699 1 0.082349 1 0.0088499 1 0.01534 1 4q loss 10 (2%) 409 0.00016 0.106 0.58491 1 0.78497 1 0.78124 1 0.10218 1 0.15609 1 0.37206 1 0.25782 1 0.28347 1 0.23802 1 5p loss 6 (1%) 413 0.00104 0.674 0.23153 1 0.78268 1 1 1 0.33147 1 0.053289 1 0.69357 1 0.48562 1 0.74371 1 0.15494 1 5q loss 14 (3%) 405 9.9999e-06 0.00722 0.36056 1 0.25411 1 0.22807 1 0.21347 1 0.31952 1 0.12976 1 0.00388 1 0.0074499 1 0.01683 1 6p loss 21 (5%) 398 9.9999e-06 0.00722 0.00444 1 0.25355 1 0.22738 1 0.0062699 1 0.01171 1 0.5349 1 0.01939 1 0.16381 1 0.02344 1 6q loss 32 (8%) 387 9.9999e-06 0.00722 0.00072999 0.477 0.076779 1 0.16294 1 0.0051199 1 0.0051999 1 0.35481 1 0.01111 1 0.062749 1 0.077059 1 8p loss 140 (33%) 279 0.00239 1 9.9999e-06 0.00722 0.54687 1 0.93379 1 9.9999e-06 0.00722 2e-05 0.0137 2e-05 0.0137 0.01138 1 0.0055599 1 0.03133 1 8q loss 20 (5%) 399 0.46183 1 0.0385 1 1 1 1 1 0.00283 1 0.067729 1 0.45155 1 0.13838 1 0.15755 1 0.084519 1 9p loss 18 (4%) 401 0.00025 0.165 0.61973 1 0.085369 1 0.072649 1 0.058769 1 0.02822 1 0.4957 1 0.5419 1 0.04066 1 0.31188 1 9q loss 7 (2%) 412 0.052259 1 0.45259 1 0.44339 1 0.44954 1 0.53325 1 1 1 0.55387 1 0.76806 1 0.3483 1 0.52938 1 10p loss 31 (7%) 388 9.9999e-06 0.00722 0.00024 0.159 0.0066599 1 0.01276 1 9.9999e-05 0.0667 0.00133 0.849 0.00449 1 0.00101 0.655 0.35474 1 0.00302 1 10q loss 34 (8%) 385 9.9999e-06 0.00722 0.01627 1 0.04003 1 0.03924 1 0.0187 1 0.01956 1 0.004 1 0.00022 0.146 0.17464 1 0.091239 1 11p loss 6 (1%) 413 0.01922 1 1 1 NA NA NA NA 0.33009 1 0.29501 1 0.51043 1 0.65647 1 0.33882 1 0.84297 1 11q loss 3 (1%) 416 0.25956 1 NA NA NA NA NA NA 0.40587 1 0.78534 1 0.77891 1 0.76048 1 1 1 1 1 12p loss 40 (10%) 379 9.9999e-06 0.00722 0.12696 1 0.19188 1 0.43567 1 0.20812 1 0.13456 1 0.01926 1 0.0078999 1 0.080989 1 0.02608 1 12q loss 17 (4%) 402 6.9999e-05 0.047 0.61806 1 0.17456 1 0.12229 1 0.30433 1 0.42451 1 0.17454 1 0.1637 1 0.26598 1 0.20844 1 13q loss 62 (15%) 357 9.9999e-06 0.00722 0.3098 1 0.55357 1 0.45707 1 0.2632 1 0.30044 1 0.41389 1 0.15504 1 0.14529 1 0.00358 1 14q loss 19 (5%) 400 0.00014 0.0932 0.10022 1 0.4658 1 0.4873 1 0.085569 1 0.19586 1 0.0084099 1 0.12703 1 0.068099 1 0.02635 1 15q loss 24 (6%) 395 9.9999e-06 0.00722 0.01817 1 0.03938 1 0.093729 1 0.01208 1 0.083119 1 0.02255 1 0.0075099 1 0.00105 0.679 0.57222 1 16p loss 29 (7%) 390 0.00059999 0.393 0.082849 1 0.45048 1 0.35052 1 0.12484 1 0.65301 1 0.01184 1 0.61967 1 0.04166 1 0.29093 1 16q loss 87 (21%) 332 9.9999e-06 0.00722 0.00113 0.728 0.50523 1 0.19743 1 0.051509 1 0.03451 1 0.03245 1 0.00094999 0.617 0.0036 1 0.16402 1 17p loss 60 (14%) 359 9.9999e-06 0.00722 0.0092499 1 0.00353 1 0.0093299 1 7.9999e-05 0.0536 6.9999e-05 0.047 0.17933 1 0.077049 1 0.074399 1 0.26741 1 17q loss 14 (3%) 405 3e-05 0.0204 0.02792 1 0.45004 1 0.38715 1 0.0097999 1 0.01217 1 0.053409 1 0.00274 1 0.0456 1 0.01014 1 18p loss 55 (13%) 364 9.9999e-06 0.00722 0.0072499 1 0.062789 1 0.067279 1 0.02216 1 0.14189 1 0.26532 1 0.02072 1 0.057089 1 0.27261 1 18q loss 82 (20%) 337 9.9999e-06 0.00722 0.02778 1 0.01558 1 0.01926 1 0.0087999 1 0.02068 1 0.2646 1 7.9999e-05 0.0536 0.04772 1 0.12933 1 19p loss 13 (3%) 406 0.00126 0.806 0.60591 1 0.62483 1 0.48717 1 0.34653 1 0.9273 1 0.12148 1 0.18287 1 0.04508 1 0.12003 1 19q loss 13 (3%) 406 0.00124 0.797 0.60675 1 0.62184 1 0.49128 1 0.34821 1 0.927 1 0.12086 1 0.18349 1 0.04535 1 0.12056 1 20p loss 15 (4%) 404 0.26212 1 0.10997 1 0.89561 1 1 1 0.26966 1 0.48916 1 0.15575 1 0.28895 1 0.57111 1 0.11837 1 20q loss 8 (2%) 411 0.076999 1 0.082239 1 1 1 1 1 0.16646 1 0.24502 1 0.01993 1 0.0282 1 0.36442 1 0.0193 1 21q loss 16 (4%) 403 0.0011 0.709 0.3505 1 0.50564 1 0.50785 1 0.19137 1 0.1087 1 0.57555 1 0.083669 1 0.16645 1 0.77727 1 22q loss 37 (9%) 382 9.9999e-06 0.00722 0.056259 1 0.44018 1 0.80536 1 0.10648 1 0.064649 1 0.061439 1 0.01198 1 0.39427 1 3e-05 0.0204 xq loss 27 (6%) 392 9.9999e-06 0.00722 0.00125 0.802 0.11105 1 0.19566 1 0.00070999 0.464 0.00058999 0.387 0.0465 1 0.00191 1 0.00176 1 0.00255 1