		Clinical Features	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1q21.3	48 (30%)	114	1	1	0.85163	1	9.9999e-05	0.0697	0.95995	1	0.52954	1	0.22663	1	0.50871	1	0.35977	1	0.057729	1	0.15126	1	0.03041	1	0.65857	1
amp_1q32.2	48 (30%)	114	0.82611	1	0.93805	1	0.00273	1	0.57744	1	0.1858	1	0.02702	1	0.5078	1	0.53971	1	0.081839	1	0.65001	1	0.03032	1	0.33154	1
amp_5q22.3	20 (12%)	142	0.02267	1	0.17476	1	0.36016	1	0.28269	1	0.10451	1	0.65837	1	0.71946	1	0.6817	1	0.45421	1	0.66249	1	0.061529	1	0.6641	1
amp_6p21.1	53 (33%)	109	0.059489	1	0.1058	1	9.9999e-06	0.00715	0.069889	1	0.80948	1	0.04459	1	0.57375	1	0.33655	1	0.19175	1	0.38681	1	0.39233	1	0.79449	1
amp_8p11.23	52 (32%)	110	0.00348	1	0.20583	1	9.9999e-06	0.00715	0.31037	1	0.37696	1	0.12881	1	0.12314	1	0.03531	1	0.04696	1	0.02755	1	0.6897	1	0.46847	1
amp_8p11.21	69 (43%)	93	0.01217	1	0.21326	1	9.9999e-06	0.00715	0.25628	1	0.37348	1	0.51919	1	0.2247	1	0.13387	1	0.18431	1	0.27414	1	0.43185	1	0.65945	1
amp_8q24.21	107 (66%)	55	0.01703	1	0.24027	1	9.9999e-06	0.00715	0.23047	1	0.62969	1	0.88742	1	0.03085	1	0.0070699	1	0.54157	1	0.26269	1	0.93794	1	0.8951	1
amp_10q22.2	11 (7%)	151	0.49922	1	0.93061	1	0.81662	1	1	1	1	1	0.97192	1	0.22155	1	0.19073	1	0.38014	1	0.18679	1	0.22941	1	1	1
amp_11p15.5	44 (27%)	118	0.38178	1	0.096139	1	0.02782	1	0.6947	1	0.72626	1	0.58792	1	0.1367	1	0.03401	1	0.096649	1	0.53846	1	0.34357	1	0.10383	1
amp_11q13.3	27 (17%)	135	0.32856	1	0.33195	1	0.0052699	1	0.0075299	1	0.91149	1	0.73108	1	0.14148	1	0.00204	1	0.01325	1	0.34118	1	0.42983	1	0.53389	1
amp_12p13.33	41 (25%)	121	0.68863	1	0.4833	1	0.00184	1	0.6542	1	0.11561	1	0.21372	1	0.80902	1	0.83627	1	0.57851	1	0.81501	1	0.20729	1	0.51063	1
amp_12p12.1	40 (25%)	122	0.69835	1	0.46835	1	0.00029	0.201	0.44709	1	0.04954	1	0.0087299	1	0.70482	1	0.51316	1	0.69419	1	0.75961	1	0.0282	1	0.83351	1
amp_13q12.13	123 (76%)	39	0.41549	1	0.17426	1	5.9999e-05	0.0419	0.22395	1	0.32382	1	0.43302	1	0.00163	1	0.00212	1	0.00253	1	0.00422	1	0.83869	1	0.23861	1
amp_13q12.2	122 (75%)	40	0.3639	1	0.23604	1	3e-05	0.0211	0.1508	1	0.59373	1	0.58722	1	0.01604	1	0.01196	1	0.02148	1	0.02185	1	0.18252	1	0.24784	1
amp_13q22.1	117 (72%)	45	0.26493	1	0.065289	1	9.9999e-06	0.00715	0.050669	1	0.90755	1	0.2689	1	0.0050699	1	0.00104	0.714	0.00412	1	0.01114	1	0.15569	1	0.14846	1
amp_15q26.1	13 (8%)	149	0.11076	1	0.21181	1	0.15135	1	0.50699	1	0.156	1	0.34799	1	0.092109	1	0.12171	1	0.90781	1	1	1	0.78966	1	0.10356	1
amp_16p11.2	45 (28%)	117	0.12436	1	0.58117	1	6.9999e-05	0.0489	0.23116	1	0.34451	1	0.668	1	0.15189	1	0.11751	1	0.097189	1	0.85232	1	0.19719	1	0.241	1
amp_17q12	43 (27%)	119	0.0065099	1	0.12712	1	2e-05	0.0141	0.53473	1	0.17676	1	0.91707	1	0.43308	1	0.02515	1	0.1487	1	0.59697	1	0.58168	1	0.88194	1
amp_17q24.1	37 (23%)	125	0.29097	1	0.70837	1	0.00021	0.146	0.12368	1	0.60801	1	0.74767	1	0.63829	1	0.17166	1	0.61022	1	0.20936	1	0.71434	1	0.74614	1
amp_19p13.2	34 (21%)	128	0.02058	1	0.25016	1	0.00158	1	0.8539	1	0.54499	1	0.085199	1	0.057709	1	0.70366	1	0.58807	1	0.69602	1	0.97686	1	0.32194	1
amp_20q11.21	143 (88%)	19	0.0076099	1	0.1622	1	0.00018	0.125	0.02389	1	0.1917	1	0.36819	1	0.057849	1	0.00319	1	0.0076099	1	0.39731	1	0.19051	1	0.3097	1
amp_20q11.23	144 (89%)	18	0.0078399	1	0.16429	1	0.00033	0.228	0.055959	1	0.19272	1	0.36842	1	0.03972	1	0.00247	1	0.01437	1	0.27967	1	0.47779	1	0.26469	1
amp_20q13.33	143 (88%)	19	0.03654	1	0.23421	1	0.01958	1	0.2423	1	0.25874	1	0.56153	1	0.17262	1	0.04517	1	0.077659	1	0.39635	1	0.33812	1	0.7106	1
amp_xp22.2	31 (19%)	131	0.050339	1	0.2191	1	0.64585	1	0.3173	1	0.96028	1	0.2349	1	0.70767	1	0.17544	1	0.81279	1	0.86967	1	0.41434	1	0.18362	1
amp_xq27.3	36 (22%)	126	0.36155	1	0.32489	1	0.01484	1	0.02022	1	0.6484	1	0.21003	1	0.01972	1	0.12297	1	0.3828	1	0.27803	1	0.29107	1	0.30547	1
del_1p36.11	72 (44%)	90	0.11464	1	0.063659	1	0.00031	0.215	0.25558	1	0.70297	1	0.92341	1	0.72551	1	0.0212	1	0.49525	1	0.063249	1	0.93964	1	0.29252	1
del_1p33	50 (31%)	112	0.36461	1	0.00405	1	3e-05	0.0211	0.21675	1	0.80087	1	0.30923	1	0.69678	1	0.16372	1	0.44022	1	0.26436	1	0.87058	1	0.31881	1
del_1p13.2	52 (32%)	110	0.47533	1	0.0237	1	2e-05	0.0141	0.62827	1	0.54507	1	0.56939	1	0.24304	1	0.02931	1	0.50753	1	0.21009	1	0.8041	1	0.21767	1
del_2p12	18 (11%)	144	0.35354	1	0.82132	1	0.00143	0.978	0.40583	1	0.44885	1	0.14184	1	0.64562	1	0.43193	1	0.35896	1	0.54511	1	0.26664	1	0.88378	1
del_3p14.2	29 (18%)	133	0.80145	1	0.70099	1	0.7834	1	1	1	0.2177	1	0.71607	1	0.34189	1	0.76387	1	0.80973	1	0.95953	1	0.7204	1	0.76793	1
del_3q26.31	16 (10%)	146	1	1	0.49654	1	0.33051	1	1	1	0.72461	1	0.83642	1	0.79898	1	0.29516	1	0.083449	1	0.37217	1	0.067129	1	0.86524	1
del_4p13	59 (36%)	103	0.77946	1	0.03949	1	9.9999e-06	0.00715	0.084299	1	0.83744	1	0.50406	1	0.71241	1	0.25078	1	0.97886	1	0.22061	1	0.41545	1	0.78612	1
del_4q22.1	72 (44%)	90	0.61979	1	0.02387	1	2e-05	0.0141	0.25668	1	0.70281	1	0.47464	1	0.39492	1	0.3119	1	0.98712	1	0.25586	1	0.79652	1	0.50407	1
del_4q35.1	71 (44%)	91	0.61227	1	0.064249	1	4e-05	0.028	0.11944	1	0.38486	1	0.65378	1	0.24805	1	0.03043	1	0.48564	1	0.051309	1	0.67357	1	0.79593	1
del_5q11.2	51 (31%)	111	0.066039	1	0.00202	1	0.01186	1	0.00184	1	0.85734	1	0.34076	1	0.55698	1	0.03419	1	0.55158	1	0.28935	1	0.67492	1	0.2524	1
del_5q22.2	57 (35%)	105	0.18316	1	0.00081999	0.564	0.055579	1	0.32321	1	0.5455	1	0.7284	1	1	1	0.098229	1	0.73898	1	0.23789	1	0.21263	1	0.44439	1
del_6p25.3	24 (15%)	138	1	1	0.93909	1	0.26408	1	0.02166	1	0.65306	1	0.98502	1	0.94963	1	0.86702	1	0.75252	1	0.78345	1	0.46858	1	0.17327	1
del_6q26	30 (19%)	132	0.15751	1	0.74384	1	0.21269	1	0.68175	1	0.10052	1	0.19949	1	0.26538	1	0.11929	1	0.055769	1	0.3343	1	0.096709	1	0.11416	1
del_7q31.1	4 (2%)	158	NA	NA	NA	NA	0.062339	1	NA	NA	1	1	0.95202	1	0.75919	1	0.76673	1	1	1	1	1	NA	NA	NA	NA
del_8p23.2	99 (61%)	63	0.11148	1	0.088579	1	9.9999e-06	0.00715	0.41412	1	1	1	0.26852	1	0.062349	1	0.02677	1	0.78185	1	0.33041	1	0.28868	1	0.46346	1
del_8p11.21	24 (15%)	138	0.31692	1	0.82344	1	0.00427	1	0.2027	1	0.11204	1	0.70241	1	0.16622	1	0.098949	1	0.04635	1	0.068489	1	0.37769	1	0.16324	1
del_10q21.1	37 (23%)	125	0.37047	1	0.41716	1	0.02927	1	0.3024	1	0.060499	1	0.18565	1	0.43092	1	0.79302	1	0.83271	1	0.2799	1	0.8224	1	0.3149	1
del_10q25.2	47 (29%)	115	0.76059	1	0.77219	1	0.071489	1	0.67082	1	0.45569	1	0.24079	1	0.68733	1	0.22323	1	0.62426	1	0.27537	1	0.71284	1	0.34892	1
del_11q22.3	38 (23%)	124	0.0328	1	0.0302	1	9.9999e-06	0.00715	0.03914	1	0.68771	1	0.13466	1	0.072179	1	0.072379	1	0.44952	1	0.96612	1	0.37884	1	0.16865	1
del_12p13.1	33 (20%)	129	1	1	0.26145	1	0.26021	1	0.28713	1	0.53567	1	0.27621	1	0.53212	1	0.14891	1	0.29488	1	0.52798	1	0.7707	1	0.53671	1
del_12q22	24 (15%)	138	0.60718	1	0.40834	1	0.02274	1	0.77371	1	0.90035	1	0.31504	1	0.85096	1	0.40275	1	0.36493	1	0.61672	1	0.30407	1	0.36164	1
del_14q11.2	68 (42%)	94	0.48306	1	0.12778	1	0.02901	1	0.931	1	0.70227	1	0.69386	1	0.066199	1	0.27729	1	0.10927	1	0.34325	1	0.57588	1	0.34329	1
del_14q31.1	70 (43%)	92	0.48337	1	0.23709	1	0.02975	1	1	1	0.7078	1	0.2004	1	0.080019	1	0.14084	1	0.1996	1	0.23934	1	0.8702	1	0.63241	1
del_15q22.33	76 (47%)	86	0.62275	1	0.15448	1	0.00077999	0.537	0.69712	1	0.14758	1	0.057829	1	0.78394	1	0.18724	1	0.42081	1	0.74414	1	0.93193	1	0.72355	1
del_16p13.3	13 (8%)	149	0.88651	1	0.67674	1	0.01583	1	0.02036	1	0.72405	1	0.60045	1	0.91243	1	0.83176	1	0.35547	1	0.63345	1	0.6753	1	0.57271	1
del_16q23.1	23 (14%)	139	0.15226	1	0.35054	1	0.04106	1	0.13637	1	0.58821	1	0.95185	1	0.58625	1	0.65791	1	0.76001	1	0.84306	1	0.51137	1	0.30713	1
del_17p11.2	110 (68%)	52	0.084759	1	0.75705	1	0.0058199	1	0.28146	1	0.82926	1	0.35795	1	0.86398	1	0.97206	1	0.93469	1	0.35172	1	0.63363	1	0.80722	1
del_18q21.2	143 (88%)	19	0.13234	1	0.3337	1	9.9999e-06	0.00715	0.11165	1	1	1	0.77052	1	0.9314	1	0.71889	1	0.40025	1	0.12341	1	0.04346	1	0.70932	1
del_18q22.1	138 (85%)	24	0.067609	1	0.087909	1	9.9999e-06	0.00715	0.03109	1	0.77669	1	0.65255	1	0.61867	1	0.6764	1	0.82755	1	0.29853	1	0.00126	0.864	0.4994	1
del_19p13.3	36 (22%)	126	0.27317	1	0.95176	1	0.01829	1	0.03027	1	1	1	0.70548	1	0.80901	1	0.51796	1	0.45975	1	0.0060599	1	0.75889	1	0.57927	1
del_20p12.1	60 (37%)	102	0.62207	1	0.03217	1	0.00050999	0.352	0.78773	1	0.54121	1	0.17868	1	0.70701	1	0.03817	1	0.04106	1	0.072719	1	0.98391	1	0.61241	1
del_20p12.1	60 (37%)	102	0.61949	1	0.03226	1	0.00057999	0.4	0.78752	1	0.53991	1	0.18208	1	0.70559	1	0.03936	1	0.04236	1	0.075119	1	0.98373	1	0.61445	1
del_21q11.2	71 (44%)	91	0.31465	1	0.060929	1	0.01942	1	0.83616	1	0.92213	1	0.21385	1	0.24862	1	0.48202	1	0.063889	1	0.72563	1	0.27287	1	0.31585	1
del_22q13.31	67 (41%)	95	0.90609	1	0.29316	1	0.0061099	1	0.8339	1	0.40862	1	0.35172	1	0.062339	1	0.12336	1	0.0060799	1	0.11269	1	0.23047	1	0.12283	1
del_xp22.33	33 (20%)	129	0.77448	1	0.91601	1	0.00131	0.897	0.00318	1	0.72605	1	0.89689	1	0.67355	1	0.49965	1	0.69828	1	1	1	0.73105	1	0.93366	1
