Clinical Features MRNA_CNMF MRNA_CHIERARCHICAL CN_CNMF METHLYATION_CNMF RPPA_CNMF RPPA_CHIERARCHICAL MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL MIRSEQ_CNMF MIRSEQ_CHIERARCHICAL MIRSEQ_MATURE_CNMF MIRSEQ_MATURE_CHIERARCHICAL nCNV (%) nWild-Type Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q amp_1q21.3 48 (30%) 114 1 1 0.85163 1 9.9999e-05 0.0697 0.95995 1 0.52954 1 0.22663 1 0.50871 1 0.35977 1 0.057729 1 0.15126 1 0.03041 1 0.65857 1 amp_1q32.2 48 (30%) 114 0.82611 1 0.93805 1 0.00273 1 0.57744 1 0.1858 1 0.02702 1 0.5078 1 0.53971 1 0.081839 1 0.65001 1 0.03032 1 0.33154 1 amp_5q22.3 20 (12%) 142 0.02267 1 0.17476 1 0.36016 1 0.28269 1 0.10451 1 0.65837 1 0.71946 1 0.6817 1 0.45421 1 0.66249 1 0.061529 1 0.6641 1 amp_6p21.1 53 (33%) 109 0.059489 1 0.1058 1 9.9999e-06 0.00715 0.069889 1 0.80948 1 0.04459 1 0.57375 1 0.33655 1 0.19175 1 0.38681 1 0.39233 1 0.79449 1 amp_8p11.23 52 (32%) 110 0.00348 1 0.20583 1 9.9999e-06 0.00715 0.31037 1 0.37696 1 0.12881 1 0.12314 1 0.03531 1 0.04696 1 0.02755 1 0.6897 1 0.46847 1 amp_8p11.21 69 (43%) 93 0.01217 1 0.21326 1 9.9999e-06 0.00715 0.25628 1 0.37348 1 0.51919 1 0.2247 1 0.13387 1 0.18431 1 0.27414 1 0.43185 1 0.65945 1 amp_8q24.21 107 (66%) 55 0.01703 1 0.24027 1 9.9999e-06 0.00715 0.23047 1 0.62969 1 0.88742 1 0.03085 1 0.0070699 1 0.54157 1 0.26269 1 0.93794 1 0.8951 1 amp_10q22.2 11 (7%) 151 0.49922 1 0.93061 1 0.81662 1 1 1 1 1 0.97192 1 0.22155 1 0.19073 1 0.38014 1 0.18679 1 0.22941 1 1 1 amp_11p15.5 44 (27%) 118 0.38178 1 0.096139 1 0.02782 1 0.6947 1 0.72626 1 0.58792 1 0.1367 1 0.03401 1 0.096649 1 0.53846 1 0.34357 1 0.10383 1 amp_11q13.3 27 (17%) 135 0.32856 1 0.33195 1 0.0052699 1 0.0075299 1 0.91149 1 0.73108 1 0.14148 1 0.00204 1 0.01325 1 0.34118 1 0.42983 1 0.53389 1 amp_12p13.33 41 (25%) 121 0.68863 1 0.4833 1 0.00184 1 0.6542 1 0.11561 1 0.21372 1 0.80902 1 0.83627 1 0.57851 1 0.81501 1 0.20729 1 0.51063 1 amp_12p12.1 40 (25%) 122 0.69835 1 0.46835 1 0.00029 0.201 0.44709 1 0.04954 1 0.0087299 1 0.70482 1 0.51316 1 0.69419 1 0.75961 1 0.0282 1 0.83351 1 amp_13q12.13 123 (76%) 39 0.41549 1 0.17426 1 5.9999e-05 0.0419 0.22395 1 0.32382 1 0.43302 1 0.00163 1 0.00212 1 0.00253 1 0.00422 1 0.83869 1 0.23861 1 amp_13q12.2 122 (75%) 40 0.3639 1 0.23604 1 3e-05 0.0211 0.1508 1 0.59373 1 0.58722 1 0.01604 1 0.01196 1 0.02148 1 0.02185 1 0.18252 1 0.24784 1 amp_13q22.1 117 (72%) 45 0.26493 1 0.065289 1 9.9999e-06 0.00715 0.050669 1 0.90755 1 0.2689 1 0.0050699 1 0.00104 0.714 0.00412 1 0.01114 1 0.15569 1 0.14846 1 amp_15q26.1 13 (8%) 149 0.11076 1 0.21181 1 0.15135 1 0.50699 1 0.156 1 0.34799 1 0.092109 1 0.12171 1 0.90781 1 1 1 0.78966 1 0.10356 1 amp_16p11.2 45 (28%) 117 0.12436 1 0.58117 1 6.9999e-05 0.0489 0.23116 1 0.34451 1 0.668 1 0.15189 1 0.11751 1 0.097189 1 0.85232 1 0.19719 1 0.241 1 amp_17q12 43 (27%) 119 0.0065099 1 0.12712 1 2e-05 0.0141 0.53473 1 0.17676 1 0.91707 1 0.43308 1 0.02515 1 0.1487 1 0.59697 1 0.58168 1 0.88194 1 amp_17q24.1 37 (23%) 125 0.29097 1 0.70837 1 0.00021 0.146 0.12368 1 0.60801 1 0.74767 1 0.63829 1 0.17166 1 0.61022 1 0.20936 1 0.71434 1 0.74614 1 amp_19p13.2 34 (21%) 128 0.02058 1 0.25016 1 0.00158 1 0.8539 1 0.54499 1 0.085199 1 0.057709 1 0.70366 1 0.58807 1 0.69602 1 0.97686 1 0.32194 1 amp_20q11.21 143 (88%) 19 0.0076099 1 0.1622 1 0.00018 0.125 0.02389 1 0.1917 1 0.36819 1 0.057849 1 0.00319 1 0.0076099 1 0.39731 1 0.19051 1 0.3097 1 amp_20q11.23 144 (89%) 18 0.0078399 1 0.16429 1 0.00033 0.228 0.055959 1 0.19272 1 0.36842 1 0.03972 1 0.00247 1 0.01437 1 0.27967 1 0.47779 1 0.26469 1 amp_20q13.33 143 (88%) 19 0.03654 1 0.23421 1 0.01958 1 0.2423 1 0.25874 1 0.56153 1 0.17262 1 0.04517 1 0.077659 1 0.39635 1 0.33812 1 0.7106 1 amp_xp22.2 31 (19%) 131 0.050339 1 0.2191 1 0.64585 1 0.3173 1 0.96028 1 0.2349 1 0.70767 1 0.17544 1 0.81279 1 0.86967 1 0.41434 1 0.18362 1 amp_xq27.3 36 (22%) 126 0.36155 1 0.32489 1 0.01484 1 0.02022 1 0.6484 1 0.21003 1 0.01972 1 0.12297 1 0.3828 1 0.27803 1 0.29107 1 0.30547 1 del_1p36.11 72 (44%) 90 0.11464 1 0.063659 1 0.00031 0.215 0.25558 1 0.70297 1 0.92341 1 0.72551 1 0.0212 1 0.49525 1 0.063249 1 0.93964 1 0.29252 1 del_1p33 50 (31%) 112 0.36461 1 0.00405 1 3e-05 0.0211 0.21675 1 0.80087 1 0.30923 1 0.69678 1 0.16372 1 0.44022 1 0.26436 1 0.87058 1 0.31881 1 del_1p13.2 52 (32%) 110 0.47533 1 0.0237 1 2e-05 0.0141 0.62827 1 0.54507 1 0.56939 1 0.24304 1 0.02931 1 0.50753 1 0.21009 1 0.8041 1 0.21767 1 del_2p12 18 (11%) 144 0.35354 1 0.82132 1 0.00143 0.978 0.40583 1 0.44885 1 0.14184 1 0.64562 1 0.43193 1 0.35896 1 0.54511 1 0.26664 1 0.88378 1 del_3p14.2 29 (18%) 133 0.80145 1 0.70099 1 0.7834 1 1 1 0.2177 1 0.71607 1 0.34189 1 0.76387 1 0.80973 1 0.95953 1 0.7204 1 0.76793 1 del_3q26.31 16 (10%) 146 1 1 0.49654 1 0.33051 1 1 1 0.72461 1 0.83642 1 0.79898 1 0.29516 1 0.083449 1 0.37217 1 0.067129 1 0.86524 1 del_4p13 59 (36%) 103 0.77946 1 0.03949 1 9.9999e-06 0.00715 0.084299 1 0.83744 1 0.50406 1 0.71241 1 0.25078 1 0.97886 1 0.22061 1 0.41545 1 0.78612 1 del_4q22.1 72 (44%) 90 0.61979 1 0.02387 1 2e-05 0.0141 0.25668 1 0.70281 1 0.47464 1 0.39492 1 0.3119 1 0.98712 1 0.25586 1 0.79652 1 0.50407 1 del_4q35.1 71 (44%) 91 0.61227 1 0.064249 1 4e-05 0.028 0.11944 1 0.38486 1 0.65378 1 0.24805 1 0.03043 1 0.48564 1 0.051309 1 0.67357 1 0.79593 1 del_5q11.2 51 (31%) 111 0.066039 1 0.00202 1 0.01186 1 0.00184 1 0.85734 1 0.34076 1 0.55698 1 0.03419 1 0.55158 1 0.28935 1 0.67492 1 0.2524 1 del_5q22.2 57 (35%) 105 0.18316 1 0.00081999 0.564 0.055579 1 0.32321 1 0.5455 1 0.7284 1 1 1 0.098229 1 0.73898 1 0.23789 1 0.21263 1 0.44439 1 del_6p25.3 24 (15%) 138 1 1 0.93909 1 0.26408 1 0.02166 1 0.65306 1 0.98502 1 0.94963 1 0.86702 1 0.75252 1 0.78345 1 0.46858 1 0.17327 1 del_6q26 30 (19%) 132 0.15751 1 0.74384 1 0.21269 1 0.68175 1 0.10052 1 0.19949 1 0.26538 1 0.11929 1 0.055769 1 0.3343 1 0.096709 1 0.11416 1 del_7q31.1 4 (2%) 158 NA NA NA NA 0.062339 1 NA NA 1 1 0.95202 1 0.75919 1 0.76673 1 1 1 1 1 NA NA NA NA del_8p23.2 99 (61%) 63 0.11148 1 0.088579 1 9.9999e-06 0.00715 0.41412 1 1 1 0.26852 1 0.062349 1 0.02677 1 0.78185 1 0.33041 1 0.28868 1 0.46346 1 del_8p11.21 24 (15%) 138 0.31692 1 0.82344 1 0.00427 1 0.2027 1 0.11204 1 0.70241 1 0.16622 1 0.098949 1 0.04635 1 0.068489 1 0.37769 1 0.16324 1 del_10q21.1 37 (23%) 125 0.37047 1 0.41716 1 0.02927 1 0.3024 1 0.060499 1 0.18565 1 0.43092 1 0.79302 1 0.83271 1 0.2799 1 0.8224 1 0.3149 1 del_10q25.2 47 (29%) 115 0.76059 1 0.77219 1 0.071489 1 0.67082 1 0.45569 1 0.24079 1 0.68733 1 0.22323 1 0.62426 1 0.27537 1 0.71284 1 0.34892 1 del_11q22.3 38 (23%) 124 0.0328 1 0.0302 1 9.9999e-06 0.00715 0.03914 1 0.68771 1 0.13466 1 0.072179 1 0.072379 1 0.44952 1 0.96612 1 0.37884 1 0.16865 1 del_12p13.1 33 (20%) 129 1 1 0.26145 1 0.26021 1 0.28713 1 0.53567 1 0.27621 1 0.53212 1 0.14891 1 0.29488 1 0.52798 1 0.7707 1 0.53671 1 del_12q22 24 (15%) 138 0.60718 1 0.40834 1 0.02274 1 0.77371 1 0.90035 1 0.31504 1 0.85096 1 0.40275 1 0.36493 1 0.61672 1 0.30407 1 0.36164 1 del_14q11.2 68 (42%) 94 0.48306 1 0.12778 1 0.02901 1 0.931 1 0.70227 1 0.69386 1 0.066199 1 0.27729 1 0.10927 1 0.34325 1 0.57588 1 0.34329 1 del_14q31.1 70 (43%) 92 0.48337 1 0.23709 1 0.02975 1 1 1 0.7078 1 0.2004 1 0.080019 1 0.14084 1 0.1996 1 0.23934 1 0.8702 1 0.63241 1 del_15q22.33 76 (47%) 86 0.62275 1 0.15448 1 0.00077999 0.537 0.69712 1 0.14758 1 0.057829 1 0.78394 1 0.18724 1 0.42081 1 0.74414 1 0.93193 1 0.72355 1 del_16p13.3 13 (8%) 149 0.88651 1 0.67674 1 0.01583 1 0.02036 1 0.72405 1 0.60045 1 0.91243 1 0.83176 1 0.35547 1 0.63345 1 0.6753 1 0.57271 1 del_16q23.1 23 (14%) 139 0.15226 1 0.35054 1 0.04106 1 0.13637 1 0.58821 1 0.95185 1 0.58625 1 0.65791 1 0.76001 1 0.84306 1 0.51137 1 0.30713 1 del_17p11.2 110 (68%) 52 0.084759 1 0.75705 1 0.0058199 1 0.28146 1 0.82926 1 0.35795 1 0.86398 1 0.97206 1 0.93469 1 0.35172 1 0.63363 1 0.80722 1 del_18q21.2 143 (88%) 19 0.13234 1 0.3337 1 9.9999e-06 0.00715 0.11165 1 1 1 0.77052 1 0.9314 1 0.71889 1 0.40025 1 0.12341 1 0.04346 1 0.70932 1 del_18q22.1 138 (85%) 24 0.067609 1 0.087909 1 9.9999e-06 0.00715 0.03109 1 0.77669 1 0.65255 1 0.61867 1 0.6764 1 0.82755 1 0.29853 1 0.00126 0.864 0.4994 1 del_19p13.3 36 (22%) 126 0.27317 1 0.95176 1 0.01829 1 0.03027 1 1 1 0.70548 1 0.80901 1 0.51796 1 0.45975 1 0.0060599 1 0.75889 1 0.57927 1 del_20p12.1 60 (37%) 102 0.62207 1 0.03217 1 0.00050999 0.352 0.78773 1 0.54121 1 0.17868 1 0.70701 1 0.03817 1 0.04106 1 0.072719 1 0.98391 1 0.61241 1 del_20p12.1 60 (37%) 102 0.61949 1 0.03226 1 0.00057999 0.4 0.78752 1 0.53991 1 0.18208 1 0.70559 1 0.03936 1 0.04236 1 0.075119 1 0.98373 1 0.61445 1 del_21q11.2 71 (44%) 91 0.31465 1 0.060929 1 0.01942 1 0.83616 1 0.92213 1 0.21385 1 0.24862 1 0.48202 1 0.063889 1 0.72563 1 0.27287 1 0.31585 1 del_22q13.31 67 (41%) 95 0.90609 1 0.29316 1 0.0061099 1 0.8339 1 0.40862 1 0.35172 1 0.062339 1 0.12336 1 0.0060799 1 0.11269 1 0.23047 1 0.12283 1 del_xp22.33 33 (20%) 129 0.77448 1 0.91601 1 0.00131 0.897 0.00318 1 0.72605 1 0.89689 1 0.67355 1 0.49965 1 0.69828 1 1 1 0.73105 1 0.93366 1