Clinical Features	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1p32.1	62 (37%)	107	9.9999e-06	0.00488	9.9999e-06	0.00488	5.9999e-05	0.0259	3e-05	0.0132	0.0054399	1	0.00338	1	0.01561	1	0.00358	1
amp_1q24.3	71 (42%)	98	2e-05	0.00894	0.0017	0.619	0.10828	1	0.01971	1	0.31244	1	0.19887	1	0.22364	1	0.27263	1
amp_3p11.2	40 (24%)	129	0.0096699	1	0.03561	1	0.0064199	1	0.00198	0.709	0.50613	1	0.04368	1	0.27425	1	0.28546	1
amp_5p15.2	73 (43%)	96	8.9999e-05	0.0382	0.0065999	1	0.01481	1	0.00026	0.106	0.86799	1	0.053629	1	0.71258	1	0.80767	1
amp_6p21.1	40 (24%)	129	3e-05	0.0132	9.9999e-06	0.00488	0.00060999	0.242	0.00080999	0.312	0.00316	1	0.00013	0.0546	0.00090999	0.344	0.00098999	0.373
amp_6q24.3	53 (31%)	116	0.00011	0.0464	9.9999e-06	0.00488	9.9999e-06	0.00488	9.9999e-06	0.00488	5.9999e-05	0.0259	9.9999e-06	0.00488	9.9999e-06	0.00488	0.00021	0.0865
amp_7q31.1	49 (29%)	120	0.00074999	0.292	0.01526	1	0.054729	1	0.20555	1	0.03845	1	0.0087599	1	0.01956	1	0.00246	0.866
amp_8q21.12	61 (36%)	108	0.054029	1	0.03639	1	0.23568	1	0.60868	1	1	1	0.04526	1	0.58706	1	0.95552	1
amp_11q22.2	26 (15%)	143	0.054909	1	0.057929	1	0.0057899	1	0.13989	1	0.13566	1	0.01779	1	0.085749	1	0.1151	1
amp_12p13.32	32 (19%)	137	0.066519	1	0.39987	1	0.14888	1	0.31415	1	0.097999	1	0.17309	1	0.18661	1	0.24355	1
amp_12p12.1	42 (25%)	127	0.00137	0.506	0.02447	1	0.0094699	1	0.077899	1	0.16143	1	0.0072699	1	0.1439	1	0.091209	1
amp_12q15	64 (38%)	105	9.9999e-06	0.00488	9.9999e-06	0.00488	9.9999e-06	0.00488	9.9999e-06	0.00488	9.9999e-06	0.00488	9.9999e-06	0.00488	9.9999e-06	0.00488	9.9999e-06	0.00488
amp_13q34	31 (18%)	138	0.00149	0.548	0.00080999	0.312	0.077019	1	0.10326	1	0.69854	1	0.16975	1	0.96392	1	0.60681	1
amp_17p11.2	69 (41%)	100	9.9999e-06	0.00488	6.9999e-05	0.03	0.1548	1	0.0112	1	0.51573	1	0.1175	1	0.30485	1	0.65923	1
amp_17q24.3	48 (28%)	121	0.0090699	1	0.00014	0.0584	0.0050799	1	0.00422	1	0.055709	1	0.02898	1	0.10051	1	0.01423	1
amp_19p13.2	68 (40%)	101	2e-05	0.00894	0.04595	1	0.10462	1	0.04696	1	0.819	1	0.47995	1	0.75801	1	0.78487	1
amp_19q12	61 (36%)	108	9.9999e-06	0.00488	0.00082999	0.317	0.01567	1	0.01424	1	0.58814	1	0.00153	0.56	0.3819	1	0.39976	1
amp_20q13.33	68 (40%)	101	7.9999e-05	0.0341	0.00337	1	0.00174	0.632	0.01078	1	0.02558	1	0.00286	0.99	0.01593	1	0.03139	1
amp_21q21.1	51 (30%)	118	2e-04	0.0826	0.00115	0.429	0.13351	1	0.14004	1	0.22363	1	0.01094	1	0.10376	1	0.17693	1
amp_xp21.2	60 (36%)	109	9.9999e-06	0.00488	0.00065999	0.259	0.04117	1	0.13695	1	0.81391	1	0.0246	1	0.50055	1	0.77446	1
amp_xq21.2	25 (15%)	144	0.0074499	1	0.079589	1	0.5997	1	0.23712	1	0.42508	1	0.25455	1	0.55877	1	0.50799	1
del_1p36.32	51 (30%)	118	0.0084399	1	9.9999e-06	0.00488	9.9999e-06	0.00488	9.9999e-06	0.00488	9.9999e-06	0.00488	9.9999e-06	0.00488	9.9999e-06	0.00488	9.9999e-06	0.00488
del_1p32.3	26 (15%)	143	0.40745	1	0.095939	1	0.98911	1	0.11755	1	0.61697	1	0.28587	1	0.55461	1	0.61987	1
del_1q44	53 (31%)	116	9.9999e-06	0.00488	6.9999e-05	0.03	0.03002	1	0.03416	1	0.068479	1	0.02308	1	0.077119	1	0.13352	1
del_2p25.3	56 (33%)	113	0.00017	0.0707	0.00018	0.0745	3e-05	0.0132	3e-04	0.121	0.00409	1	0.00085999	0.328	0.0056999	1	0.00087999	0.334
del_2q37.3	68 (40%)	101	9.9999e-06	0.00488	0.02173	1	0.10661	1	0.03975	1	0.38606	1	0.39967	1	0.5732	1	0.57774	1
del_2q37.3	70 (41%)	99	9.9999e-06	0.00488	0.0073099	1	0.32634	1	0.01313	1	0.80464	1	0.41746	1	0.95638	1	0.84149	1
del_3p21.31	37 (22%)	132	0.03	1	9.9999e-06	0.00488	0.00013	0.0546	0.00303	1	0.0067099	1	0.00017	0.0707	0.02307	1	0.0062299	1
del_3q29	39 (23%)	130	0.04421	1	0.00034	0.137	0.20653	1	0.54984	1	0.43361	1	0.054159	1	0.24137	1	0.075469	1
del_4q35.1	63 (37%)	106	2e-05	0.00894	0.02555	1	0.56407	1	0.61508	1	0.47422	1	0.45894	1	0.20452	1	0.97694	1
del_6p25.1	61 (36%)	108	0.4079	1	0.04223	1	0.0025	0.877	0.01278	1	0.054359	1	0.00297	1	0.0348	1	0.02018	1
del_6q14.1	49 (29%)	120	0.00028	0.114	0.01123	1	0.30762	1	0.45249	1	0.94555	1	0.70493	1	0.84787	1	0.12278	1
del_6q16.1	48 (28%)	121	0.00442	1	0.21134	1	0.24099	1	0.79212	1	0.86502	1	0.52388	1	0.47638	1	0.058349	1
del_7q36.3	44 (26%)	125	5.9999e-05	0.0259	0.077009	1	0.1324	1	0.44755	1	0.28358	1	0.30811	1	0.33116	1	0.46106	1
del_8p23.3	52 (31%)	117	0.04825	1	9.9999e-06	0.00488	0.0072299	1	0.0094799	1	0.00069999	0.274	0.01959	1	0.00432	1	0.01211	1
del_9p23	58 (34%)	111	0.0067499	1	0.31474	1	0.02704	1	0.27205	1	0.10839	1	0.02967	1	0.096149	1	0.0058299	1
del_9p21.3	72 (43%)	97	0.00129	0.48	0.03825	1	0.00151	0.554	0.02125	1	0.0293	1	0.00075999	0.295	0.00206	0.735	0.00426	1
del_9q34.3	46 (27%)	123	0.00043	0.172	0.13043	1	0.14646	1	0.19919	1	0.15328	1	0.051539	1	0.080769	1	0.03508	1
del_10p15.3	88 (52%)	81	0.00311	1	0.00036	0.145	0.58957	1	0.02838	1	0.79203	1	0.64366	1	0.81822	1	0.74002	1
del_10q23.31	95 (56%)	74	9.9999e-06	0.00488	9.9999e-06	0.00488	9.9999e-06	0.00488	9.9999e-06	0.00488	0.00026	0.106	5e-05	0.0217	2e-05	0.00894	0.00050999	0.203
del_11p15.5	73 (43%)	96	5e-05	0.0217	0.00079999	0.309	0.92712	1	0.49644	1	0.52232	1	0.92542	1	0.55255	1	0.87894	1
del_11q24.3	75 (44%)	94	9.9999e-06	0.00488	2e-05	0.00894	0.02265	1	0.01391	1	0.0076099	1	0.0080999	1	0.00196	0.704	0.056839	1
del_12p13.1	57 (34%)	112	0.00131	0.485	0.00045	0.18	0.02026	1	0.17832	1	0.074899	1	0.082089	1	0.13958	1	0.10777	1
del_12q12	34 (20%)	135	0.04309	1	0.03269	1	0.83009	1	0.20168	1	0.17052	1	0.66447	1	0.5969	1	0.50576	1
del_13q14.2	121 (72%)	48	9.9999e-06	0.00488	9.9999e-06	0.00488	9.9999e-05	0.0424	9.9999e-06	0.00488	0.00264	0.921	0.0019	0.684	0.0022	0.779	0.00481	1
del_14q24.1	56 (33%)	113	0.52631	1	0.02752	1	0.7504	1	0.00022	0.0902	0.16468	1	0.03148	1	0.050129	1	0.079949	1
del_15q11.2	32 (19%)	137	0.18979	1	0.03837	1	0.00022	0.0902	0.0051699	1	0.01222	1	0.02718	1	0.02013	1	0.04146	1
del_16q12.1	95 (56%)	74	9.9999e-06	0.00488	0.00075999	0.295	0.02427	1	0.02001	1	0.12328	1	0.069229	1	0.02338	1	0.10117	1
del_16q23.1	94 (56%)	75	4e-05	0.0174	0.00068999	0.27	0.0083399	1	0.0068099	1	0.0222	1	0.03294	1	0.00304	1	0.01029	1
del_17p13.1	82 (49%)	87	3e-05	0.0132	9.9999e-05	0.0424	0.00013	0.0546	0.00056999	0.226	0.01611	1	0.00268	0.93	0.00338	1	0.00021	0.0865
del_17q11.2	51 (30%)	118	2e-05	0.00894	9.9999e-06	0.00488	0.00063999	0.252	0.00328	1	0.00107	0.401	0.00114	0.426	0.00044	0.176	0.00104	0.391
del_17q25.3	45 (27%)	124	0.00061999	0.245	0.00325	1	0.055189	1	0.062709	1	0.51442	1	0.16586	1	0.47264	1	0.38524	1
del_18q23	57 (34%)	112	0.0095199	1	0.0329	1	0.01785	1	0.079759	1	0.0352	1	0.083509	1	0.02909	1	0.26922	1
del_19p13.3	50 (30%)	119	2e-05	0.00894	0.00012	0.0505	0.0053999	1	0.01905	1	0.01066	1	0.00186	0.671	0.00207	0.737	0.00081999	0.314
del_19q13.43	73 (43%)	96	0.00042	0.169	0.01264	1	0.10214	1	0.18523	1	0.071379	1	0.02723	1	0.066919	1	0.16143	1
del_21q11.2	31 (18%)	138	0.36163	1	0.40849	1	0.26756	1	0.32783	1	0.01514	1	0.32668	1	0.10158	1	0.13858	1
del_21q22.3	44 (26%)	125	0.069829	1	0.03714	1	0.48226	1	0.57463	1	0.21731	1	0.55263	1	0.38581	1	0.72245	1
del_22q13.31	54 (32%)	115	6.9999e-05	0.03	0.02704	1	0.89078	1	0.11133	1	0.4415	1	0.42794	1	0.6752	1	0.20573	1
del_xp22.33	54 (32%)	115	0.01806	1	0.00158	0.577	0.0097099	1	0.18498	1	0.11919	1	0.14826	1	0.1747	1	0.13817	1
del_xq21.1	80 (47%)	89	0.035	1	0.00086999	0.331	0.00391	1	0.00499	1	0.01367	1	0.0063699	1	0.00452	1	0.01658	1
del_xq27.1	82 (49%)	87	3e-05	0.0132	0.00175	0.633	0.00071999	0.281	0.00226	0.798	0.00262	0.917	0.00266	0.926	0.00212	0.753	0.0013	0.482