Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1p12	96 (32%)	203	0.01353	1	0.76356	1	0.70568	1	0.88298	1	0.1579	1	0.61057	1	0.084519	1	0.78215	1	0.52422	1	0.39948	1
amp_1q21.3	158 (53%)	141	9.9999e-06	0.0054	0.02476	1	0.3368	1	0.52285	1	0.0096899	1	0.090169	1	0.082699	1	0.081049	1	0.095949	1	0.17496	1
amp_1q44	162 (54%)	137	9.9999e-06	0.0054	0.00437	1	0.16216	1	0.14275	1	0.03178	1	0.01512	1	0.0078199	1	0.0083799	1	0.073089	1	0.01032	1
amp_3p13	78 (26%)	221	0.15298	1	0.16561	1	0.068919	1	0.11339	1	0.78474	1	0.14616	1	0.57194	1	0.01111	1	0.82271	1	0.66981	1
amp_4q12	53 (18%)	246	0.00057999	0.289	0.20122	1	0.082839	1	0.53241	1	0.3096	1	0.12105	1	0.04074	1	0.00127	0.62	0.0080999	1	0.03931	1
amp_5p15.33	91 (30%)	208	0.00012	0.0608	0.2157	1	0.69414	1	0.73924	1	0.094899	1	0.26057	1	0.00348	1	0.084009	1	0.00312	1	0.28253	1
amp_5q35.3	48 (16%)	251	0.0067499	1	0.00218	1	0.093329	1	0.073179	1	0.03654	1	0.2259	1	0.22421	1	0.097959	1	0.00457	1	0.12351	1
amp_6p24.3	169 (57%)	130	9.9999e-06	0.0054	0.00097999	0.483	0.32534	1	0.01684	1	0.097139	1	0.01601	1	0.0053699	1	0.00039	0.196	0.0054899	1	0.00117	0.572
amp_6q12	64 (21%)	235	0.0050899	1	0.79309	1	0.5286	1	0.080969	1	0.1131	1	0.14421	1	0.087669	1	0.097199	1	0.51524	1	0.39645	1
amp_7p22.1	164 (55%)	135	4e-05	0.0206	0.82503	1	0.62517	1	0.2147	1	0.02577	1	0.21931	1	0.56663	1	0.50597	1	0.68201	1	0.17281	1
amp_7q34	177 (59%)	122	9.9999e-06	0.0054	0.082639	1	0.31763	1	0.95313	1	0.062359	1	0.01978	1	0.67094	1	0.4881	1	0.35731	1	0.90227	1
amp_8q11.21	137 (46%)	162	2e-05	0.0104	0.02054	1	0.5695	1	0.24649	1	0.01586	1	0.37006	1	0.66803	1	0.77181	1	0.04994	1	0.3875	1
amp_8q24.21	158 (53%)	141	9.9999e-06	0.0054	0.01618	1	0.75246	1	0.93639	1	0.0098299	1	0.68817	1	0.54985	1	0.49544	1	0.30307	1	0.35664	1
amp_11q13.3	58 (19%)	241	0.02648	1	0.3119	1	0.90527	1	0.8395	1	0.40614	1	0.31018	1	0.36607	1	0.092659	1	0.98147	1	0.34885	1
amp_11q13.4	54 (18%)	245	0.00103	0.507	0.095899	1	0.9172	1	0.87332	1	0.14826	1	0.75658	1	0.1191	1	0.03494	1	0.87214	1	0.23665	1
amp_12q14.1	51 (17%)	248	0.01115	1	0.32983	1	0.86997	1	0.28594	1	0.055799	1	0.11397	1	0.78715	1	0.42021	1	0.13757	1	0.8533	1
amp_12q15	50 (17%)	249	0.0116	1	0.68166	1	0.64182	1	0.5578	1	0.27175	1	0.44399	1	0.68766	1	0.56608	1	0.46316	1	0.75273	1
amp_13q12.3	85 (28%)	214	9.9999e-06	0.0054	6.9999e-05	0.036	0.38806	1	0.74886	1	0.00463	1	0.02862	1	0.832	1	0.66207	1	0.4746	1	0.93213	1
amp_15q26.2	99 (33%)	200	0.00034	0.172	0.38648	1	0.93772	1	0.80718	1	0.29695	1	0.04648	1	0.77674	1	0.056089	1	1	1	0.36991	1
amp_17q25.3	100 (33%)	199	9.9999e-05	0.0511	0.01253	1	0.03068	1	0.074549	1	0.10818	1	0.82795	1	0.844	1	0.051369	1	0.03046	1	0.01822	1
amp_19p13.2	56 (19%)	243	0.10709	1	0.36568	1	0.4403	1	0.95616	1	0.01244	1	0.10113	1	0.98221	1	0.37087	1	0.84053	1	0.20993	1
amp_20q13.33	153 (51%)	146	9.9999e-06	0.0054	0.0125	1	0.82692	1	0.98832	1	0.00188	0.91	0.01087	1	0.26128	1	0.3204	1	0.14749	1	0.24036	1
amp_22q13.2	127 (42%)	172	0.00011	0.056	0.13008	1	0.97276	1	0.71682	1	0.42564	1	0.11772	1	0.47601	1	0.20175	1	0.31744	1	0.43685	1
del_1p36.31	70 (23%)	229	0.12537	1	9.9999e-06	0.0054	0.5772	1	0.20952	1	0.074509	1	0.00426	1	0.097339	1	0.11801	1	0.72845	1	0.3408	1
del_1p22.1	76 (25%)	223	0.00108	0.53	9.9999e-06	0.0054	0.59192	1	0.21253	1	2e-05	0.0104	0.00036	0.181	0.19281	1	0.45102	1	0.4875	1	0.57313	1
del_2q37.3	74 (25%)	225	0.71504	1	0.055669	1	0.091219	1	0.00418	1	0.00251	1	0.062009	1	0.0064299	1	0.098959	1	0.21713	1	0.056749	1
del_3p24.3	60 (20%)	239	0.47843	1	0.37469	1	0.37449	1	0.52299	1	0.19246	1	0.39072	1	0.26777	1	0.43698	1	0.099069	1	0.11707	1
del_3q23	48 (16%)	251	0.1443	1	0.053239	1	0.35125	1	0.43058	1	0.20736	1	0.54288	1	0.36336	1	0.45837	1	0.60566	1	0.44674	1
del_4q34.3	85 (28%)	214	0.01957	1	0.01267	1	0.51319	1	0.55221	1	0.056079	1	0.0129	1	0.54119	1	0.00302	1	0.21466	1	0.0072499	1
del_5p15.31	61 (20%)	238	0.78425	1	0.34507	1	0.54826	1	0.53817	1	0.65132	1	0.66961	1	0.99352	1	0.58316	1	0.78041	1	0.41992	1
del_5q11.2	80 (27%)	219	0.0015	0.727	0.17771	1	0.57348	1	0.17783	1	0.4677	1	0.1059	1	0.85084	1	0.33331	1	0.61262	1	0.53476	1
del_5q31.3	111 (37%)	188	0.00051999	0.261	0.00091999	0.454	0.62008	1	0.30045	1	0.38995	1	0.094209	1	0.93235	1	0.35189	1	0.5145	1	0.39823	1
del_6q22.31	179 (60%)	120	9.9999e-06	0.0054	0.02145	1	0.95771	1	0.44453	1	0.0050199	1	0.19317	1	0.56403	1	0.55627	1	0.74825	1	0.34059	1
del_6q26	184 (62%)	115	9.9999e-06	0.0054	0.01923	1	0.83942	1	0.5374	1	0.00142	0.692	0.054449	1	0.18987	1	0.42374	1	0.86112	1	0.43239	1
del_8p23.3	69 (23%)	230	0.079929	1	0.1603	1	0.202	1	0.16182	1	0.079619	1	0.79271	1	0.4538	1	0.32057	1	0.21015	1	0.78242	1
del_9p23	206 (69%)	93	0.00082999	0.411	0.01987	1	0.45537	1	0.6133	1	0.00422	1	0.1407	1	0.02368	1	0.080529	1	0.56751	1	0.058879	1
del_9p21.3	229 (77%)	70	9.9999e-06	0.0054	0.00114	0.559	0.75672	1	0.70141	1	9.9999e-06	0.0054	0.01351	1	0.02425	1	0.32779	1	0.47103	1	0.25231	1
del_10p15.3	163 (55%)	136	9.9999e-06	0.0054	0.00271	1	0.83314	1	0.1558	1	6.9999e-05	0.036	0.00011	0.056	0.29286	1	0.097779	1	0.37655	1	0.79239	1
del_10q23.31	188 (63%)	111	9.9999e-06	0.0054	0.01369	1	0.87967	1	0.20728	1	0.00064999	0.323	0.00055999	0.28	0.13413	1	0.02216	1	0.90751	1	0.56271	1
del_10q26.3	193 (65%)	106	9.9999e-06	0.0054	0.095719	1	0.83654	1	0.30865	1	3e-05	0.0155	0.00031	0.157	0.11553	1	0.1086	1	0.23399	1	0.88072	1
del_11p11.2	96 (32%)	203	9.9999e-05	0.0511	0.0081799	1	0.6499	1	0.85637	1	0.13582	1	0.00146	0.71	0.58171	1	0.22774	1	0.59157	1	0.69726	1
del_11q23.3	161 (54%)	138	9.9999e-06	0.0054	0.21044	1	0.90204	1	0.26211	1	0.03378	1	0.22663	1	0.29595	1	0.01728	1	0.1863	1	0.02435	1
del_12q23.3	73 (24%)	226	0.00067999	0.337	0.02062	1	0.96515	1	0.82186	1	0.51335	1	0.28259	1	0.28762	1	0.2242	1	0.90929	1	0.7637	1
del_13q12.11	68 (23%)	231	7.9999e-05	0.041	0.069649	1	0.2449	1	0.90128	1	0.98382	1	0.96188	1	0.64537	1	0.44155	1	0.52747	1	0.44451	1
del_13q34	68 (23%)	231	0.00036	0.181	0.00443	1	0.067649	1	0.74694	1	0.89484	1	0.26077	1	0.94158	1	0.84907	1	1	1	0.39014	1
del_14q23.3	102 (34%)	197	9.9999e-06	0.0054	0.80899	1	0.55294	1	0.24647	1	0.00272	1	0.27296	1	0.02623	1	0.66294	1	0.00346	1	0.18964	1
del_14q32.2	100 (33%)	199	9.9999e-06	0.0054	0.76904	1	0.50505	1	0.18418	1	0.00058999	0.294	0.38554	1	0.02011	1	0.5809	1	0.01534	1	0.10868	1
del_15q13.3	73 (24%)	226	2e-05	0.0104	0.01594	1	0.089639	1	0.3052	1	0.2761	1	0.04736	1	0.94392	1	0.79689	1	0.60019	1	0.70687	1
del_15q14	73 (24%)	226	9.9999e-06	0.0054	0.0116	1	0.80756	1	0.68343	1	0.13193	1	0.02475	1	0.89241	1	0.30484	1	0.64122	1	0.39275	1
del_15q15.2	78 (26%)	221	9.9999e-06	0.0054	0.0096399	1	0.47555	1	0.43136	1	0.25158	1	0.04578	1	0.89068	1	0.44879	1	0.86449	1	0.34897	1
del_16p13.3	56 (19%)	243	0.36626	1	0.02205	1	0.0124	1	0.33714	1	0.04893	1	0.87364	1	0.4663	1	0.59032	1	0.13611	1	0.2378	1
del_16q12.1	97 (32%)	202	0.091229	1	0.54126	1	0.02117	1	0.6853	1	0.15417	1	0.26248	1	0.086129	1	0.19345	1	0.21954	1	0.1496	1
del_16q24.3	107 (36%)	192	0.03214	1	0.65245	1	0.14569	1	0.90718	1	0.01302	1	0.051019	1	0.17609	1	0.052199	1	0.03534	1	0.04204	1
del_19p13.3	83 (28%)	216	0.0067699	1	0.40733	1	0.00239	1	0.062379	1	0.00342	1	0.22136	1	0.89558	1	0.44253	1	0.66512	1	0.12496	1