Correlation between gene mutation status and molecular subtypes
Skin Cutaneous Melanoma (Metastatic)
15 July 2014  |  analyses__2014_07_15
Maintainer Information
Citation Information
doi:10.7908/C1GF0S9F
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2014): Correlation between gene mutation status and molecular subtypes. Broad Institute of MIT and Harvard. doi:10.7908/C1GF0S9F
Overview
Introduction

This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.

Summary

Testing the association between mutation status of 147 genes and 10 molecular subtypes across 278 patients, 3 significant findings detected with P value < 0.05 and Q value < 0.25.

  • BRAF mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • SF3B1 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

Results
Overview of the results

Table 1.  Get Full Table Overview of the association between mutation status of 147 genes and 10 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 3 significant findings detected.

Clinical
Features 		CN
CNMF 		METHLYATION
CNMF 		RPPA
CNMF 		RPPA
CHIERARCHICAL 		MRNASEQ
CNMF 		MRNASEQ
CHIERARCHICAL 		MIRSEQ
CNMF 		MIRSEQ
CHIERARCHICAL 		MIRSEQ
MATURE
CNMF 		MIRSEQ
MATURE
CHIERARCHICAL
nMutated (%) nWild-Type Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test
BRAF 140 (50%) 138 1e-05
(0.0147) 		0.019
(1.00) 		0.503
(1.00) 		0.62
(1.00) 		0.00256
(1.00) 		1e-05
(0.0147) 		0.00304
(1.00) 		0.138
(1.00) 		0.249
(1.00) 		0.036
(1.00)
SF3B1 14 (5%) 264 0.981
(1.00) 		0.251
(1.00) 		0.035
(1.00) 		0.451
(1.00) 		0.0509
(1.00) 		0.137
(1.00) 		0.0374
(1.00) 		0.0256
(1.00) 		0.0009
(1.00) 		0.00013
(0.191)
NRAS 86 (31%) 192 0.00161
(1.00) 		0.0146
(1.00) 		0.425
(1.00) 		0.237
(1.00) 		0.932
(1.00) 		0.157
(1.00) 		0.875
(1.00) 		0.336
(1.00) 		0.595
(1.00) 		0.179
(1.00)
TP53 47 (17%) 231 0.864
(1.00) 		0.0111
(1.00) 		0.25
(1.00) 		0.36
(1.00) 		0.188
(1.00) 		0.327
(1.00) 		0.447
(1.00) 		0.604
(1.00) 		0.706
(1.00) 		0.308
(1.00)
CDKN2A 41 (15%) 237 0.291
(1.00) 		0.07
(1.00) 		0.153
(1.00) 		0.688
(1.00) 		0.889
(1.00) 		0.427
(1.00) 		0.945
(1.00) 		0.0586
(1.00) 		0.604
(1.00) 		0.804
(1.00)
RPS27 24 (9%) 254 0.689
(1.00) 		0.894
(1.00) 		0.71
(1.00) 		0.925
(1.00) 		0.694
(1.00) 		0.756
(1.00) 		0.793
(1.00) 		0.989
(1.00) 		0.628
(1.00) 		0.477
(1.00)
MRPS31 19 (7%) 259 0.926
(1.00) 		0.0266
(1.00) 		0.964
(1.00) 		0.871
(1.00) 		0.155
(1.00) 		0.331
(1.00) 		0.408
(1.00) 		0.77
(1.00) 		0.17
(1.00) 		0.386
(1.00)
NF1 38 (14%) 240 0.417
(1.00) 		0.399
(1.00) 		0.546
(1.00) 		0.559
(1.00) 		0.361
(1.00) 		0.0763
(1.00) 		0.113
(1.00) 		0.876
(1.00) 		0.193
(1.00) 		0.629
(1.00)
RAC1 20 (7%) 258 0.0148
(1.00) 		0.587
(1.00) 		0.597
(1.00) 		0.431
(1.00) 		0.541
(1.00) 		0.65
(1.00) 		0.219
(1.00) 		0.394
(1.00) 		0.101
(1.00) 		0.191
(1.00)
ARID2 35 (13%) 243 0.944
(1.00) 		0.153
(1.00) 		0.67
(1.00) 		0.784
(1.00) 		0.807
(1.00) 		0.653
(1.00) 		0.254
(1.00) 		0.16
(1.00) 		0.92
(1.00) 		0.539
(1.00)
C15ORF23 19 (7%) 259 0.854
(1.00) 		0.0597
(1.00) 		0.716
(1.00) 		0.771
(1.00) 		0.795
(1.00) 		0.231
(1.00) 		0.95
(1.00) 		0.818
(1.00) 		0.809
(1.00) 		0.958
(1.00)
PTEN 23 (8%) 255 0.462
(1.00) 		0.0742
(1.00) 		0.0187
(1.00) 		0.0835
(1.00) 		0.313
(1.00) 		0.00344
(1.00) 		0.178
(1.00) 		0.0455
(1.00) 		0.605
(1.00) 		0.202
(1.00)
NOTCH2NL 15 (5%) 263 0.591
(1.00) 		0.596
(1.00) 		0.608
(1.00) 		0.139
(1.00) 		0.0192
(1.00) 		0.251
(1.00) 		0.343
(1.00) 		0.341
(1.00) 		0.0663
(1.00) 		0.304
(1.00)
MAP2K1 13 (5%) 265 0.0181
(1.00) 		0.00041
(0.601) 		0.365
(1.00) 		0.0218
(1.00) 		0.243
(1.00) 		0.0959
(1.00) 		0.0195
(1.00) 		0.658
(1.00) 		0.187
(1.00) 		0.347
(1.00)
PPP6C 20 (7%) 258 0.641
(1.00) 		0.451
(1.00) 		0.487
(1.00) 		0.301
(1.00) 		0.739
(1.00) 		0.252
(1.00) 		0.128
(1.00) 		0.0668
(1.00) 		0.263
(1.00) 		0.34
(1.00)
IDH1 16 (6%) 262 0.0839
(1.00) 		0.226
(1.00) 		0.631
(1.00) 		0.167
(1.00) 		0.144
(1.00) 		0.938
(1.00) 		0.338
(1.00) 		0.562
(1.00) 		0.156
(1.00) 		0.0961
(1.00)
PDE1A 39 (14%) 239 0.688
(1.00) 		0.58
(1.00) 		0.715
(1.00) 		0.63
(1.00) 		0.023
(1.00) 		0.0805
(1.00) 		0.37
(1.00) 		0.146
(1.00) 		0.199
(1.00) 		0.212
(1.00)
HMGCR 11 (4%) 267 0.879
(1.00) 		0.316
(1.00) 		0.339
(1.00) 		0.644
(1.00) 		0.547
(1.00) 		0.306
(1.00) 		0.594
(1.00) 		0.195
(1.00) 		0.227
(1.00) 		0.606
(1.00)
PHGDH 12 (4%) 266 0.629
(1.00) 		0.394
(1.00) 		0.496
(1.00) 		0.275
(1.00) 		0.936
(1.00) 		0.446
(1.00) 		0.485
(1.00) 		0.319
(1.00) 		0.661
(1.00) 		0.359
(1.00)
SLC38A4 34 (12%) 244 0.725
(1.00) 		0.252
(1.00) 		0.454
(1.00) 		0.833
(1.00) 		0.00962
(1.00) 		0.133
(1.00) 		0.882
(1.00) 		0.642
(1.00) 		1
(1.00) 		0.794
(1.00)
CDK4 7 (3%) 271 0.737
(1.00) 		0.441
(1.00) 		0.0432
(1.00) 		0.914
(1.00) 		1
(1.00) 		0.423
(1.00) 		0.821
(1.00) 		0.487
(1.00) 		0.449
(1.00) 		0.341
(1.00)
FAM58A 5 (2%) 273 0.81
(1.00) 		0.747
(1.00) 		0.909
(1.00) 		0.834
(1.00) 		0.231
(1.00) 		0.564
(1.00) 		0.0546
(1.00) 		0.00477
(1.00) 		0.132
(1.00) 		0.346
(1.00)
EMG1 9 (3%) 269 0.967
(1.00) 		0.915
(1.00) 		0.53
(1.00) 		0.271
(1.00) 		0.4
(1.00) 		0.0205
(1.00) 		0.836
(1.00) 		0.964
(1.00) 		0.583
(1.00) 		0.47
(1.00)
RQCD1 9 (3%) 269 0.0653
(1.00) 		0.221
(1.00) 		0.0864
(1.00) 		0.929
(1.00) 		0.583
(1.00) 		0.557
(1.00) 		0.734
(1.00) 		0.119
(1.00) 		0.479
(1.00) 		0.959
(1.00)
HSD11B1 14 (5%) 264 0.71
(1.00) 		0.193
(1.00) 		0.683
(1.00) 		0.184
(1.00) 		0.24
(1.00) 		0.336
(1.00) 		0.401
(1.00) 		0.944
(1.00) 		0.514
(1.00) 		0.127
(1.00)
DMC1 12 (4%) 266 0.723
(1.00) 		0.396
(1.00) 		0.129
(1.00) 		0.303
(1.00) 		0.00652
(1.00) 		0.769
(1.00) 		0.0886
(1.00) 		0.69
(1.00) 		0.0242
(1.00) 		0.0306
(1.00)
NRK 44 (16%) 234 0.183
(1.00) 		0.464
(1.00) 		0.511
(1.00) 		0.647
(1.00) 		0.407
(1.00) 		0.801
(1.00) 		0.989
(1.00) 		0.642
(1.00) 		0.804
(1.00) 		0.993
(1.00)
TAF1A 13 (5%) 265 0.559
(1.00) 		0.826
(1.00) 		0.941
(1.00) 		0.939
(1.00) 		1
(1.00) 		0.672
(1.00) 		0.231
(1.00) 		0.782
(1.00) 		0.0355
(1.00) 		0.565
(1.00)
OXA1L 8 (3%) 270 0.414
(1.00) 		0.254
(1.00) 		1
(1.00) 		0.55
(1.00) 		0.444
(1.00) 		0.456
(1.00) 		0.774
(1.00) 		0.522
(1.00) 		0.491
(1.00) 		0.186
(1.00)
COL3A1 57 (21%) 221 0.364
(1.00) 		1
(1.00) 		0.955
(1.00) 		0.148
(1.00) 		0.323
(1.00) 		0.267
(1.00) 		0.939
(1.00) 		0.623
(1.00) 		0.894
(1.00) 		0.474
(1.00)
TCHHL1 39 (14%) 239 0.657
(1.00) 		0.461
(1.00) 		0.0355
(1.00) 		0.185
(1.00) 		0.227
(1.00) 		0.227
(1.00) 		0.945
(1.00) 		0.868
(1.00) 		0.746
(1.00) 		0.968
(1.00)
IL5RA 17 (6%) 261 0.549
(1.00) 		0.904
(1.00) 		0.774
(1.00) 		0.226
(1.00) 		0.601
(1.00) 		0.14
(1.00) 		0.516
(1.00) 		0.336
(1.00) 		0.62
(1.00) 		0.567
(1.00)
NBPF7 13 (5%) 265 1
(1.00) 		0.717
(1.00) 		0.794
(1.00) 		0.494
(1.00) 		0.0663
(1.00) 		0.22
(1.00) 		0.0929
(1.00) 		0.163
(1.00) 		0.0862
(1.00) 		0.0599
(1.00)
KEL 37 (13%) 241 0.426
(1.00) 		0.31
(1.00) 		0.775
(1.00) 		0.654
(1.00) 		0.0039
(1.00) 		0.0223
(1.00) 		0.262
(1.00) 		0.577
(1.00) 		0.0899
(1.00) 		0.158
(1.00)
C7ORF58 35 (13%) 243 0.658
(1.00) 		0.521
(1.00) 		0.0886
(1.00) 		0.00254
(1.00) 		0.809
(1.00) 		0.234
(1.00) 		0.298
(1.00) 		0.635
(1.00) 		0.714
(1.00) 		0.506
(1.00)
NBPF1 39 (14%) 239 0.451
(1.00) 		0.222
(1.00) 		0.0344
(1.00) 		0.701
(1.00) 		0.478
(1.00) 		0.293
(1.00) 		0.168
(1.00) 		0.931
(1.00) 		0.0661
(1.00) 		0.295
(1.00)
TMEM216 8 (3%) 270 0.184
(1.00) 		0.393
(1.00) 		0.0577
(1.00) 		0.624
(1.00) 		0.743
(1.00) 		0.195
(1.00) 		0.469
(1.00) 		0.541
(1.00) 		0.664
(1.00) 		0.709
(1.00)
DOM3Z 7 (3%) 271 0.74
(1.00) 		0.204
(1.00) 		1
(1.00) 		0.0953
(1.00) 		0.635
(1.00) 		0.0533
(1.00) 		0.0847
(1.00) 		0.165
(1.00) 		0.0202
(1.00) 		0.202
(1.00)
BCLAF1 48 (17%) 230 0.482
(1.00) 		0.28
(1.00) 		0.226
(1.00) 		0.829
(1.00) 		0.921
(1.00) 		0.881
(1.00) 		0.793
(1.00) 		0.88
(1.00) 		0.876
(1.00) 		0.16
(1.00)
ZFX 14 (5%) 264 0.708
(1.00) 		0.697
(1.00) 		0.529
(1.00) 		1
(1.00) 		0.0493
(1.00) 		0.686
(1.00) 		0.431
(1.00) 		0.658
(1.00) 		0.0488
(1.00) 		0.465
(1.00)
SAG 11 (4%) 267 0.178
(1.00) 		0.579
(1.00) 		0.51
(1.00) 		0.168
(1.00) 		0.634
(1.00) 		0.512
(1.00) 		0.505
(1.00) 		0.2
(1.00) 		0.862
(1.00) 		0.353
(1.00)
OR51S1 30 (11%) 248 0.369
(1.00) 		0.969
(1.00) 		0.493
(1.00) 		0.318
(1.00) 		0.832
(1.00) 		0.267
(1.00) 		0.187
(1.00) 		0.796
(1.00) 		0.0828
(1.00) 		0.028
(1.00)
USP17L2 22 (8%) 256 0.453
(1.00) 		0.159
(1.00) 		0.813
(1.00) 		0.57
(1.00) 		0.272
(1.00) 		0.905
(1.00) 		0.948
(1.00) 		0.486
(1.00) 		0.746
(1.00) 		0.606
(1.00)
LRPPRC 15 (5%) 263 0.239
(1.00) 		0.669
(1.00) 		0.42
(1.00) 		0.678
(1.00) 		0.535
(1.00) 		0.572
(1.00) 		0.476
(1.00) 		0.812
(1.00) 		0.653
(1.00) 		0.951
(1.00)
BTK 16 (6%) 262 0.362
(1.00) 		0.148
(1.00) 		0.475
(1.00) 		0.368
(1.00) 		0.00131
(1.00) 		0.275
(1.00) 		0.679
(1.00) 		0.229
(1.00) 		0.28
(1.00) 		0.0741
(1.00)
DSG3 47 (17%) 231 0.598
(1.00) 		0.959
(1.00) 		0.0706
(1.00) 		0.795
(1.00) 		0.81
(1.00) 		0.81
(1.00) 		0.376
(1.00) 		0.595
(1.00) 		0.199
(1.00) 		0.18
(1.00)
C1QTNF9 16 (6%) 262 0.452
(1.00) 		0.391
(1.00) 		0.646
(1.00) 		0.791
(1.00) 		1
(1.00) 		0.442
(1.00) 		0.509
(1.00) 		0.134
(1.00) 		0.316
(1.00) 		0.0971
(1.00)
BLM 15 (5%) 263 0.653
(1.00) 		0.595
(1.00) 		0.367
(1.00) 		0.401
(1.00) 		0.172
(1.00) 		0.656
(1.00) 		0.0879
(1.00) 		0.447
(1.00) 		0.225
(1.00) 		0.0332
(1.00)
ACSM2B 44 (16%) 234 0.94
(1.00) 		0.0926
(1.00) 		0.329
(1.00) 		0.303
(1.00) 		0.127
(1.00) 		0.256
(1.00) 		0.468
(1.00) 		0.666
(1.00) 		0.462
(1.00) 		0.612
(1.00)
PARM1 19 (7%) 259 0.578
(1.00) 		0.914
(1.00) 		0.364
(1.00) 		0.357
(1.00) 		0.8
(1.00) 		1
(1.00) 		0.496
(1.00) 		0.183
(1.00) 		0.509
(1.00) 		0.425
(1.00)
TP63 48 (17%) 230 0.123
(1.00) 		0.108
(1.00) 		0.0428
(1.00) 		0.276
(1.00) 		0.252
(1.00) 		0.137
(1.00) 		0.393
(1.00) 		0.775
(1.00) 		0.426
(1.00) 		0.0712
(1.00)
NGF 9 (3%) 269 0.334
(1.00) 		0.917
(1.00) 		0.0756
(1.00) 		1
(1.00) 		0.693
(1.00) 		0.719
(1.00) 		0.758
(1.00) 		0.827
(1.00) 		0.907
(1.00) 		0.374
(1.00)
ANO4 45 (16%) 233 0.709
(1.00) 		0.331
(1.00) 		0.28
(1.00) 		0.779
(1.00) 		0.435
(1.00) 		0.581
(1.00) 		0.851
(1.00) 		0.968
(1.00) 		0.476
(1.00) 		0.426
(1.00)
PCDH18 50 (18%) 228 0.298
(1.00) 		0.98
(1.00) 		0.0151
(1.00) 		0.715
(1.00) 		0.351
(1.00) 		1
(1.00) 		0.378
(1.00) 		0.371
(1.00) 		1
(1.00) 		0.171
(1.00)
NMS 13 (5%) 265 0.9
(1.00) 		0.316
(1.00) 		0.311
(1.00) 		0.912
(1.00) 		0.0106
(1.00) 		0.239
(1.00) 		0.921
(1.00) 		0.876
(1.00) 		0.938
(1.00) 		1
(1.00)
C12ORF43 5 (2%) 273 0.755
(1.00) 		0.444
(1.00) 		0.195
(1.00) 		0.269
(1.00) 		0.741
(1.00) 		0.679
(1.00) 		0.894
(1.00) 		0.494
(1.00) 		0.743
(1.00) 		0.212
(1.00)
XIRP2 94 (34%) 184 0.387
(1.00) 		0.406
(1.00) 		0.202
(1.00) 		0.722
(1.00) 		0.557
(1.00) 		0.377
(1.00) 		0.626
(1.00) 		0.656
(1.00) 		0.91
(1.00) 		0.234
(1.00)
USH2A 91 (33%) 187 0.895
(1.00) 		0.377
(1.00) 		0.0673
(1.00) 		0.823
(1.00) 		0.574
(1.00) 		0.268
(1.00) 		0.524
(1.00) 		0.208
(1.00) 		0.345
(1.00) 		0.0394
(1.00)
DDX3X 19 (7%) 259 0.497
(1.00) 		1
(1.00) 		0.578
(1.00) 		0.187
(1.00) 		0.697
(1.00) 		0.28
(1.00) 		0.662
(1.00) 		0.515
(1.00) 		0.761
(1.00) 		0.534
(1.00)
PTPN22 24 (9%) 254 0.464
(1.00) 		0.106
(1.00) 		0.439
(1.00) 		0.0254
(1.00) 		0.554
(1.00) 		0.323
(1.00) 		0.624
(1.00) 		0.801
(1.00) 		0.21
(1.00) 		0.484
(1.00)
C3ORF71 4 (1%) 274 0.515
(1.00) 		0.306
(1.00) 		0.482
(1.00) 		0.522
(1.00) 		0.151
(1.00) 		0.173
(1.00) 		0.858
(1.00) 		0.158
(1.00) 		0.693
(1.00) 		0.381
(1.00)
CEACAM6 15 (5%) 263 0.712
(1.00) 		0.418
(1.00) 		0.923
(1.00) 		0.739
(1.00) 		0.895
(1.00) 		0.571
(1.00) 		0.47
(1.00) 		0.754
(1.00) 		0.398
(1.00) 		0.297
(1.00)
MUC7 17 (6%) 261 0.782
(1.00) 		0.318
(1.00) 		0.579
(1.00) 		0.744
(1.00) 		0.862
(1.00) 		0.067
(1.00) 		0.0506
(1.00) 		0.404
(1.00) 		0.0915
(1.00) 		0.464
(1.00)
SELP 34 (12%) 244 0.267
(1.00) 		0.0847
(1.00) 		0.0387
(1.00) 		0.0729
(1.00) 		0.461
(1.00) 		0.87
(1.00) 		0.864
(1.00) 		0.408
(1.00) 		0.817
(1.00) 		0.729
(1.00)
LIPH 15 (5%) 263 0.479
(1.00) 		0.347
(1.00) 		0.256
(1.00) 		0.415
(1.00) 		0.796
(1.00) 		0.421
(1.00) 		0.831
(1.00) 		0.908
(1.00) 		0.617
(1.00) 		0.975
(1.00)
MMP1 14 (5%) 264 0.0184
(1.00) 		0.251
(1.00) 		0.76
(1.00) 		0.868
(1.00) 		0.835
(1.00) 		0.502
(1.00) 		0.39
(1.00) 		0.0569
(1.00) 		0.94
(1.00) 		0.395
(1.00)
KLF11 9 (3%) 269 0.275
(1.00) 		0.0702
(1.00) 		0.841
(1.00) 		0.0258
(1.00) 		0.583
(1.00) 		0.891
(1.00) 		0.934
(1.00) 		0.929
(1.00) 		0.913
(1.00) 		0.439
(1.00)
USP9X 16 (6%) 262 0.212
(1.00) 		0.185
(1.00) 		0.213
(1.00) 		0.148
(1.00) 		1
(1.00) 		0.515
(1.00) 		0.383
(1.00) 		0.366
(1.00) 		0.446
(1.00) 		0.282
(1.00)
PTK7 17 (6%) 261 0.456
(1.00) 		0.376
(1.00) 		0.354
(1.00) 		0.625
(1.00) 		0.704
(1.00) 		0.442
(1.00) 		0.0488
(1.00) 		0.341
(1.00) 		0.206
(1.00) 		0.614
(1.00)
SLC14A1 18 (6%) 260 0.746
(1.00) 		0.501
(1.00) 		0.835
(1.00) 		0.3
(1.00) 		1
(1.00) 		0.257
(1.00) 		0.993
(1.00) 		0.556
(1.00) 		0.779
(1.00) 		0.417
(1.00)
PROX2 13 (5%) 265 0.149
(1.00) 		0.422
(1.00) 		0.899
(1.00) 		0.871
(1.00) 		0.557
(1.00) 		0.0459
(1.00) 		0.769
(1.00) 		0.403
(1.00) 		0.489
(1.00) 		0.722
(1.00)
DNMBP 19 (7%) 259 0.419
(1.00) 		0.45
(1.00) 		0.978
(1.00) 		0.978
(1.00) 		0.347
(1.00) 		0.754
(1.00) 		0.345
(1.00) 		0.532
(1.00) 		0.042
(1.00) 		0.353
(1.00)
MPP7 30 (11%) 248 0.759
(1.00) 		0.253
(1.00) 		0.397
(1.00) 		0.269
(1.00) 		0.298
(1.00) 		0.137
(1.00) 		0.926
(1.00) 		0.708
(1.00) 		0.969
(1.00) 		0.874
(1.00)
IFNGR2 4 (1%) 274 0.694
(1.00) 		0.456
(1.00) 		0.6
(1.00) 		0.0692
(1.00) 		0.464
(1.00) 		0.353
(1.00) 		0.694
(1.00) 		0.179
(1.00) 		0.69
(1.00) 		1
(1.00)
ASNSD1 7 (3%) 271 0.0727
(1.00) 		0.703
(1.00) 		0.542
(1.00) 		0.0313
(1.00) 		0.503
(1.00) 		0.652
(1.00) 		0.75
(1.00) 		0.868
(1.00) 		0.798
(1.00) 		0.941
(1.00)
RB1 9 (3%) 269 0.116
(1.00) 		0.0895
(1.00) 		1
(1.00) 		0.937
(1.00) 		0.583
(1.00) 		0.718
(1.00) 		0.0492
(1.00) 		0.0038
(1.00) 		0.475
(1.00) 		0.887
(1.00)
CCK 6 (2%) 272 0.235
(1.00) 		0.664
(1.00) 		0.301
(1.00) 		0.0202
(1.00) 		0.451
(1.00) 		0.52
(1.00) 		0.357
(1.00) 		0.947
(1.00) 		1
(1.00) 		0.656
(1.00)
ZNF780B 10 (4%) 268 0.319
(1.00) 		0.564
(1.00) 		0.34
(1.00) 		0.555
(1.00) 		0.665
(1.00) 		0.589
(1.00) 		0.511
(1.00) 		0.963
(1.00) 		0.249
(1.00) 		0.921
(1.00)
ATP5F1 7 (3%) 271 0.797
(1.00) 		0.798
(1.00) 		0.033
(1.00) 		0.478
(1.00) 		0.8
(1.00) 		0.564
(1.00) 		0.811
(1.00) 		0.615
(1.00) 		0.633
(1.00) 		1
(1.00)
LOC728819 8 (3%) 270 0.717
(1.00) 		0.902
(1.00) 		0.107
(1.00) 		0.808
(1.00) 		0.741
(1.00) 		1
(1.00) 		0.843
(1.00) 		0.302
(1.00) 		0.906
(1.00) 		0.91
(1.00)
LACRT 9 (3%) 269 0.463
(1.00) 		0.437
(1.00) 		0.0679
(1.00) 		0.0848
(1.00) 		0.916
(1.00) 		1
(1.00) 		0.323
(1.00) 		0.921
(1.00) 		0.602
(1.00) 		0.745
(1.00)
RPGRIP1 25 (9%) 253 0.108
(1.00) 		0.724
(1.00) 		0.318
(1.00) 		0.448
(1.00) 		0.209
(1.00) 		0.0651
(1.00) 		0.542
(1.00) 		0.212
(1.00) 		0.106
(1.00) 		0.0455
(1.00)
THEMIS 34 (12%) 244 0.474
(1.00) 		0.112
(1.00) 		0.536
(1.00) 		0.634
(1.00) 		0.759
(1.00) 		0.298
(1.00) 		0.298
(1.00) 		0.258
(1.00) 		0.518
(1.00) 		0.212
(1.00)
PTPRT 81 (29%) 197 0.105
(1.00) 		0.097
(1.00) 		0.268
(1.00) 		0.93
(1.00) 		0.841
(1.00) 		0.347
(1.00) 		0.729
(1.00) 		0.3
(1.00) 		0.792
(1.00) 		0.0374
(1.00)
SELPLG 10 (4%) 268 0.888
(1.00) 		0.519
(1.00) 		0.0824
(1.00) 		1
(1.00) 		0.401
(1.00) 		0.592
(1.00) 		0.956
(1.00) 		1
(1.00) 		0.84
(1.00) 		0.851
(1.00)
CSN3 4 (1%) 274 0.0951
(1.00) 		0.141
(1.00) 		0.392
(1.00) 		0.584
(1.00) 		0.834
(1.00) 		0.63
(1.00) 		0.924
(1.00) 		0.742
(1.00) 		0.553
(1.00) 		0.432
(1.00)
SLC7A11 12 (4%) 266 0.632
(1.00) 		0.612
(1.00) 		0.731
(1.00) 		0.474
(1.00) 		1
(1.00) 		1
(1.00) 		0.707
(1.00) 		0.765
(1.00) 		0.71
(1.00) 		0.528
(1.00)
SYNE1 73 (26%) 205 0.172
(1.00) 		0.0818
(1.00) 		0.492
(1.00) 		0.773
(1.00) 		0.603
(1.00) 		0.45
(1.00) 		0.108
(1.00) 		0.737
(1.00) 		0.579
(1.00) 		0.993
(1.00)
NFASC 23 (8%) 255 0.884
(1.00) 		0.283
(1.00) 		0.741
(1.00) 		1
(1.00) 		0.477
(1.00) 		0.747
(1.00) 		0.592
(1.00) 		0.436
(1.00) 		0.49
(1.00) 		0.181
(1.00)
CCDC11 17 (6%) 261 0.23
(1.00) 		0.069
(1.00) 		0.259
(1.00) 		0.185
(1.00) 		0.398
(1.00) 		0.56
(1.00) 		0.134
(1.00) 		0.818
(1.00) 		0.0417
(1.00) 		0.0922
(1.00)
IL31RA 17 (6%) 261 0.0826
(1.00) 		0.318
(1.00) 		0.56
(1.00) 		0.964
(1.00) 		0.291
(1.00) 		0.531
(1.00) 		0.732
(1.00) 		0.102
(1.00) 		0.138
(1.00) 		0.237
(1.00)
MLL 38 (14%) 240 0.553
(1.00) 		0.518
(1.00) 		0.0727
(1.00) 		0.447
(1.00) 		0.576
(1.00) 		0.176
(1.00) 		0.591
(1.00) 		0.641
(1.00) 		0.651
(1.00) 		0.378
(1.00)
DIRC2 4 (1%) 274 1
(1.00) 		0.838
(1.00) 		0.686
(1.00) 		0.483
(1.00) 		0.418
(1.00) 		0.9
(1.00) 		0.117
(1.00) 		1
(1.00)
ADAM22 19 (7%) 259 0.564
(1.00) 		0.21
(1.00) 		0.0128
(1.00) 		0.268
(1.00) 		0.193
(1.00) 		0.229
(1.00) 		0.988
(1.00) 		0.984
(1.00) 		0.865
(1.00) 		0.965
(1.00)
PLCXD2 9 (3%) 269 0.875
(1.00) 		0.117
(1.00) 		0.814
(1.00) 		0.203
(1.00) 		0.436
(1.00) 		0.557
(1.00) 		0.324
(1.00) 		0.246
(1.00) 		0.178
(1.00) 		1
(1.00)
EDN1 9 (3%) 269 0.845
(1.00) 		1
(1.00) 		0.58
(1.00) 		0.929
(1.00) 		0.639
(1.00) 		1
(1.00) 		0.635
(1.00) 		0.313
(1.00) 		0.439
(1.00) 		0.236
(1.00)
HTR7 9 (3%) 269 0.478
(1.00) 		0.436
(1.00) 		0.546
(1.00) 		0.625
(1.00) 		0.114
(1.00) 		0.555
(1.00) 		0.365
(1.00) 		0.411
(1.00) 		0.198
(1.00) 		0.708
(1.00)
TLR9 18 (6%) 260 0.485
(1.00) 		0.188
(1.00) 		1
(1.00) 		0.412
(1.00) 		0.87
(1.00) 		0.353
(1.00) 		0.0338
(1.00) 		0.705
(1.00) 		1
(1.00) 		0.331
(1.00)
MYH1 67 (24%) 211 0.389
(1.00) 		0.00748
(1.00) 		0.423
(1.00) 		0.373
(1.00) 		0.172
(1.00) 		0.593
(1.00) 		0.919
(1.00) 		0.949
(1.00) 		0.506
(1.00) 		0.0222
(1.00)
EPHA3 30 (11%) 248 0.18
(1.00) 		0.59
(1.00) 		0.966
(1.00) 		0.827
(1.00) 		0.941
(1.00) 		1
(1.00) 		0.236
(1.00) 		0.0416
(1.00) 		0.606
(1.00) 		0.0335
(1.00)
ARL16 7 (3%) 271 0.167
(1.00) 		0.348
(1.00) 		0.481
(1.00) 		0.29
(1.00) 		0.394
(1.00) 		0.746
(1.00) 		0.185
(1.00) 		0.591
(1.00) 		0.35
(1.00) 		0.64
(1.00)
DDX17 11 (4%) 267 0.179
(1.00) 		0.0886
(1.00) 		0.794
(1.00) 		0.884
(1.00) 		1
(1.00) 		0.081
(1.00) 		0.264
(1.00) 		0.816
(1.00) 		0.849
(1.00) 		0.811
(1.00)
MAN1A1 14 (5%) 264 0.648
(1.00) 		0.194
(1.00) 		0.58
(1.00) 		0.179
(1.00) 		0.173
(1.00) 		0.431
(1.00) 		0.451
(1.00) 		0.0991
(1.00) 		0.433
(1.00) 		0.23
(1.00)
ADAM30 28 (10%) 250 0.179
(1.00) 		0.849
(1.00) 		0.431
(1.00) 		0.0392
(1.00) 		0.389
(1.00) 		0.59
(1.00) 		0.0846
(1.00) 		0.534
(1.00) 		0.134
(1.00) 		0.166
(1.00)
NBEAL1 30 (11%) 248 0.0463
(1.00) 		0.0193
(1.00) 		0.565
(1.00) 		0.0738
(1.00) 		0.886
(1.00) 		0.463
(1.00) 		0.664
(1.00) 		0.593
(1.00) 		0.585
(1.00) 		0.876
(1.00)
WDR65 21 (8%) 257 0.843
(1.00) 		0.845
(1.00) 		0.281
(1.00) 		0.916
(1.00) 		0.582
(1.00) 		0.628
(1.00) 		0.219
(1.00) 		0.167
(1.00) 		0.0726
(1.00) 		0.733
(1.00)
C6ORF165 19 (7%) 259 0.471
(1.00) 		0.499
(1.00) 		0.278
(1.00) 		0.229
(1.00) 		0.48
(1.00) 		0.756
(1.00) 		0.747
(1.00) 		0.165
(1.00) 		0.562
(1.00) 		0.667
(1.00)
RNF133 8 (3%) 270 0.886
(1.00) 		0.472
(1.00) 		0.341
(1.00) 		0.481
(1.00) 		0.821
(1.00) 		0.878
(1.00) 		0.243
(1.00) 		0.616
(1.00) 		0.601
(1.00) 		0.906
(1.00)
GTPBP4 8 (3%) 270 0.119
(1.00) 		0.609
(1.00) 		0.686
(1.00) 		0.194
(1.00) 		0.256
(1.00) 		0.113
(1.00) 		0.758
(1.00) 		0.474
(1.00) 		0.601
(1.00) 		0.128
(1.00)
ACSBG1 12 (4%) 266 0.136
(1.00) 		0.397
(1.00) 		0.719
(1.00) 		0.254
(1.00) 		0.344
(1.00) 		0.444
(1.00) 		0.904
(1.00) 		0.551
(1.00) 		1
(1.00) 		0.0935
(1.00)
TPTE 60 (22%) 218 0.406
(1.00) 		0.0638
(1.00) 		0.071
(1.00) 		0.917
(1.00) 		0.0416
(1.00) 		0.978
(1.00) 		0.621
(1.00) 		0.538
(1.00) 		0.618
(1.00) 		0.00168
(1.00)
CLCC1 13 (5%) 265 0.611
(1.00) 		0.772
(1.00) 		0.868
(1.00) 		0.593
(1.00) 		0.825
(1.00) 		0.342
(1.00) 		0.612
(1.00) 		0.519
(1.00) 		0.491
(1.00) 		0.531
(1.00)
PPAP2B 10 (4%) 268 0.795
(1.00) 		0.715
(1.00) 		0.3
(1.00) 		0.76
(1.00) 		0.4
(1.00) 		0.198
(1.00) 		0.862
(1.00) 		0.955
(1.00) 		0.324
(1.00) 		0.75
(1.00)
CD300E 10 (4%) 268 0.166
(1.00) 		0.609
(1.00) 		0.529
(1.00) 		0.794
(1.00) 		0.122
(1.00) 		0.154
(1.00) 		0.78
(1.00) 		0.51
(1.00) 		1
(1.00) 		0.64
(1.00)
ALDH5A1 10 (4%) 268 0.298
(1.00) 		0.102
(1.00) 		0.414
(1.00) 		0.95
(1.00) 		0.0181
(1.00) 		0.2
(1.00) 		0.761
(1.00) 		0.795
(1.00) 		0.783
(1.00) 		0.202
(1.00)
SPRYD3 8 (3%) 270 0.0494
(1.00) 		1
(1.00) 		0.683
(1.00) 		0.673
(1.00) 		0.322
(1.00) 		0.879
(1.00) 		0.116
(1.00) 		0.74
(1.00) 		0.74
(1.00) 		0.572
(1.00)
MAP3K5 20 (7%) 258 0.525
(1.00) 		0.282
(1.00) 		0.226
(1.00) 		0.637
(1.00) 		0.00833
(1.00) 		0.651
(1.00) 		0.723
(1.00) 		0.452
(1.00) 		0.956
(1.00) 		0.111
(1.00)
CASP8 9 (3%) 269 0.0138
(1.00) 		0.433
(1.00) 		0.449
(1.00) 		0.73
(1.00) 		0.0905
(1.00) 		0.718
(1.00) 		0.732
(1.00) 		0.75
(1.00) 		0.479
(1.00) 		0.922
(1.00)
SNCAIP 49 (18%) 229 0.189
(1.00) 		0.815
(1.00) 		0.508
(1.00) 		0.794
(1.00) 		0.867
(1.00) 		0.904
(1.00) 		0.739
(1.00) 		0.0693
(1.00) 		0.63
(1.00) 		0.0711
(1.00)
HLA-DRA 12 (4%) 266 0.201
(1.00) 		0.659
(1.00) 		0.0657
(1.00) 		0.0939
(1.00) 		0.497
(1.00) 		0.343
(1.00) 		0.555
(1.00) 		0.0578
(1.00) 		0.15
(1.00) 		0.0592
(1.00)
ACTC1 15 (5%) 263 0.0842
(1.00) 		0.35
(1.00) 		0.467
(1.00) 		0.57
(1.00) 		0.474
(1.00) 		0.135
(1.00) 		0.327
(1.00) 		0.657
(1.00) 		0.356
(1.00) 		0.15
(1.00)
ELOVL3 5 (2%) 273 0.665
(1.00) 		1
(1.00) 		0.523
(1.00) 		0.442
(1.00) 		0.277
(1.00) 		0.567
(1.00) 		0.665
(1.00) 		0.867
(1.00) 		1
(1.00) 		0.312
(1.00)
THSD7B 89 (32%) 189 0.283
(1.00) 		0.341
(1.00) 		0.496
(1.00) 		0.595
(1.00) 		0.365
(1.00) 		0.127
(1.00) 		0.03
(1.00) 		0.688
(1.00) 		0.24
(1.00) 		0.465
(1.00)
SLC27A5 9 (3%) 269 0.902
(1.00) 		0.481
(1.00) 		0.439
(1.00) 		0.692
(1.00) 		0.915
(1.00) 		1
(1.00) 		0.132
(1.00) 		0.767
(1.00) 		0.199
(1.00) 		0.391
(1.00)
PDE4DIP 44 (16%) 234 0.393
(1.00) 		0.0786
(1.00) 		0.137
(1.00) 		0.362
(1.00) 		0.457
(1.00) 		0.576
(1.00) 		0.532
(1.00) 		0.596
(1.00) 		0.481
(1.00) 		0.524
(1.00)
KANK3 8 (3%) 270 0.762
(1.00) 		0.135
(1.00) 		0.483
(1.00) 		0.761
(1.00) 		0.0402
(1.00) 		0.526
(1.00) 		0.879
(1.00) 		0.766
(1.00) 		0.822
(1.00) 		0.746
(1.00)
RUNX1T1 34 (12%) 244 0.261
(1.00) 		0.0278
(1.00) 		0.705
(1.00) 		0.385
(1.00) 		0.872
(1.00) 		0.217
(1.00) 		0.486
(1.00) 		0.662
(1.00) 		0.738
(1.00) 		0.292
(1.00)
WDR12 11 (4%) 267 0.68
(1.00) 		0.537
(1.00) 		0.562
(1.00) 		0.37
(1.00) 		0.638
(1.00) 		0.681
(1.00) 		1
(1.00) 		0.834
(1.00) 		0.802
(1.00) 		0.241
(1.00)
POTEG 31 (11%) 247 0.13
(1.00) 		0.0106
(1.00) 		0.337
(1.00) 		0.551
(1.00) 		0.699
(1.00) 		0.17
(1.00) 		0.202
(1.00) 		0.436
(1.00) 		0.0815
(1.00) 		0.28
(1.00)
ITPR2 16 (6%) 262 0.507
(1.00) 		0.469
(1.00) 		1
(1.00) 		0.793
(1.00) 		0.468
(1.00) 		0.938
(1.00) 		0.654
(1.00) 		0.651
(1.00) 		0.798
(1.00) 		0.58
(1.00)
CRNKL1 13 (5%) 265 0.612
(1.00) 		0.106
(1.00) 		0.543
(1.00) 		0.418
(1.00) 		0.938
(1.00) 		0.613
(1.00) 		0.196
(1.00) 		0.533
(1.00) 		0.0302
(1.00) 		0.474
(1.00)
DSP 60 (22%) 218 0.984
(1.00) 		0.287
(1.00) 		0.158
(1.00) 		0.923
(1.00) 		0.304
(1.00) 		0.456
(1.00) 		0.516
(1.00) 		0.927
(1.00) 		0.64
(1.00) 		0.0607
(1.00)
CAGE1 11 (4%) 267 1
(1.00) 		0.864
(1.00) 		0.817
(1.00) 		0.0593
(1.00) 		0.861
(1.00) 		0.832
(1.00) 		0.503
(1.00) 		0.722
(1.00) 		0.927
(1.00) 		0.908
(1.00)
DDX43 11 (4%) 267 0.302
(1.00) 		0.802
(1.00) 		0.731
(1.00) 		1
(1.00) 		0.21
(1.00) 		0.754
(1.00) 		1
(1.00) 		1
(1.00) 		0.594
(1.00) 		0.782
(1.00)
CYP3A7 25 (9%) 253 0.826
(1.00) 		0.219
(1.00) 		0.528
(1.00) 		0.897
(1.00) 		0.127
(1.00) 		0.466
(1.00) 		0.382
(1.00) 		0.482
(1.00) 		0.439
(1.00) 		0.402
(1.00)
VGLL1 6 (2%) 272 0.483
(1.00) 		0.666
(1.00) 		1
(1.00) 		0.757
(1.00) 		0.592
(1.00) 		0.727
(1.00) 		0.211
(1.00) 		0.557
(1.00) 		0.164
(1.00) 		0.502
(1.00)
GML 10 (4%) 268 0.0251
(1.00) 		0.433
(1.00) 		0.941
(1.00) 		0.219
(1.00) 		0.851
(1.00) 		0.815
(1.00) 		0.458
(1.00) 		0.697
(1.00) 		0.0808
(1.00) 		0.223
(1.00)
GZMA 11 (4%) 267 0.653
(1.00) 		0.316
(1.00) 		0.727
(1.00) 		0.766
(1.00) 		0.926
(1.00) 		0.832
(1.00) 		0.417
(1.00) 		0.855
(1.00) 		0.684
(1.00) 		0.28
(1.00)
NPTX1 8 (3%) 270 0.959
(1.00) 		0.429
(1.00) 		0.366
(1.00) 		0.689
(1.00) 		0.0777
(1.00) 		0.456
(1.00) 		0.498
(1.00) 		0.068
(1.00) 		0.547
(1.00) 		0.446
(1.00)
DACT1 13 (5%) 265 0.177
(1.00) 		0.878
(1.00) 		0.223
(1.00) 		0.656
(1.00) 		0.179
(1.00) 		0.26
(1.00) 		0.97
(1.00) 		0.97
(1.00) 		0.801
(1.00) 		0.937
(1.00)
STK19 13 (5%) 265 0.734
(1.00) 		0.0575
(1.00) 		0.145
(1.00) 		0.888
(1.00) 		0.68
(1.00) 		0.168
(1.00) 		0.322
(1.00) 		0.56
(1.00) 		0.053
(1.00) 		0.415
(1.00)
STK31 36 (13%) 242 0.301
(1.00) 		0.0615
(1.00) 		0.356
(1.00) 		0.662
(1.00) 		0.0016
(1.00) 		0.00881
(1.00) 		0.759
(1.00) 		0.988
(1.00) 		0.872
(1.00) 		0.112
(1.00)
ROS1 57 (21%) 221 0.0201
(1.00) 		0.0285
(1.00) 		0.797
(1.00) 		0.762
(1.00) 		0.964
(1.00) 		0.764
(1.00) 		0.0561
(1.00) 		0.0755
(1.00) 		0.106
(1.00) 		0.158
(1.00)
KCNB2 59 (21%) 219 0.0763
(1.00) 		0.0424
(1.00) 		0.177
(1.00) 		0.513
(1.00) 		0.338
(1.00) 		0.421
(1.00) 		0.583
(1.00) 		0.593
(1.00) 		0.472
(1.00) 		0.356
(1.00)
ART3 12 (4%) 266 0.274
(1.00) 		0.394
(1.00) 		0.852
(1.00) 		0.258
(1.00) 		0.574
(1.00) 		0.918
(1.00) 		0.809
(1.00) 		0.833
(1.00) 		0.862
(1.00) 		0.831
(1.00)
CLDN4 11 (4%) 267 0.685
(1.00) 		0.536
(1.00) 		0.617
(1.00) 		0.664
(1.00) 		0.801
(1.00) 		0.834
(1.00) 		0.604
(1.00) 		0.353
(1.00) 		0.563
(1.00) 		0.268
(1.00)
RAG2 18 (6%) 260 0.54
(1.00) 		0.527
(1.00) 		0.21
(1.00) 		0.378
(1.00) 		0.119
(1.00) 		0.334
(1.00) 		0.543
(1.00) 		0.896
(1.00) 		0.343
(1.00) 		0.515
(1.00)
'NRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00161 (Fisher's exact test), Q value = 1

Table S1.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
NRAS MUTATED 38 14 7 27
NRAS WILD-TYPE 44 37 40 71

Figure S1.  Get High-res Image Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0146 (Fisher's exact test), Q value = 1

Table S2.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
NRAS MUTATED 41 23 22
NRAS WILD-TYPE 60 82 50

Figure S2.  Get High-res Image Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S3.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
NRAS MUTATED 17 19 7 8
NRAS WILD-TYPE 29 39 19 30
'NRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 1

Table S4.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
NRAS MUTATED 11 20 10 10
NRAS WILD-TYPE 16 38 24 39
'NRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S5.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
NRAS MUTATED 29 24 33
NRAS WILD-TYPE 64 58 70
'NRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 1

Table S6.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
NRAS MUTATED 25 50 11
NRAS WILD-TYPE 38 117 37
'NRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S7.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
NRAS MUTATED 20 28 21 10 3
NRAS WILD-TYPE 37 60 52 29 9
'NRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S8.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
NRAS MUTATED 18 21 9 34
NRAS WILD-TYPE 55 50 25 57
'NRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S9.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
NRAS MUTATED 31 28 23
NRAS WILD-TYPE 59 68 60
'NRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S10.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
NRAS MUTATED 41 19 13 9
NRAS WILD-TYPE 73 60 40 14
'TP53 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S11.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
TP53 MUTATED 12 8 8 19
TP53 WILD-TYPE 70 43 39 79
'TP53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0111 (Fisher's exact test), Q value = 1

Table S12.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
TP53 MUTATED 24 18 5
TP53 WILD-TYPE 77 87 67

Figure S3.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TP53 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 1

Table S13.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
TP53 MUTATED 5 8 3 10
TP53 WILD-TYPE 41 50 23 28
'TP53 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S14.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
TP53 MUTATED 4 13 4 5
TP53 WILD-TYPE 23 45 30 44
'TP53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S15.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
TP53 MUTATED 12 19 16
TP53 WILD-TYPE 81 63 87
'TP53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 1

Table S16.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
TP53 MUTATED 8 33 6
TP53 WILD-TYPE 55 134 42
'TP53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S17.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
TP53 MUTATED 12 15 10 5 0
TP53 WILD-TYPE 45 73 63 34 12
'TP53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S18.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
TP53 MUTATED 11 9 4 18
TP53 WILD-TYPE 62 62 30 73
'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S19.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
TP53 MUTATED 16 15 11
TP53 WILD-TYPE 74 81 72
'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S20.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
TP53 MUTATED 23 9 6 4
TP53 WILD-TYPE 91 70 47 19
'CDKN2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 1

Table S21.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
CDKN2A MUTATED 12 9 10 10
CDKN2A WILD-TYPE 70 42 37 88
'CDKN2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.07 (Fisher's exact test), Q value = 1

Table S22.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
CDKN2A MUTATED 21 14 6
CDKN2A WILD-TYPE 80 91 66
'CDKN2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 1

Table S23.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CDKN2A MUTATED 7 6 8 6
CDKN2A WILD-TYPE 39 52 18 32
'CDKN2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S24.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
CDKN2A MUTATED 5 8 4 10
CDKN2A WILD-TYPE 22 50 30 39
'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S25.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
CDKN2A MUTATED 15 11 15
CDKN2A WILD-TYPE 78 71 88
'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S26.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
CDKN2A MUTATED 9 22 10
CDKN2A WILD-TYPE 54 145 38
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S27.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
CDKN2A MUTATED 10 14 10 5 1
CDKN2A WILD-TYPE 47 74 63 34 11
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0586 (Fisher's exact test), Q value = 1

Table S28.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
CDKN2A MUTATED 6 9 4 21
CDKN2A WILD-TYPE 67 62 30 70
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S29.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
CDKN2A MUTATED 16 12 12
CDKN2A WILD-TYPE 74 84 71
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S30.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
CDKN2A MUTATED 19 11 6 4
CDKN2A WILD-TYPE 95 68 47 19
'RPS27 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S31.  Gene #4: 'RPS27 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
RPS27 MUTATED 8 4 2 10
RPS27 WILD-TYPE 74 47 45 88
'RPS27 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S32.  Gene #4: 'RPS27 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
RPS27 MUTATED 9 8 7
RPS27 WILD-TYPE 92 97 65
'RPS27 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S33.  Gene #4: 'RPS27 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
RPS27 MUTATED 5 6 1 5
RPS27 WILD-TYPE 41 52 25 33
'RPS27 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S34.  Gene #4: 'RPS27 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
RPS27 MUTATED 3 6 4 4
RPS27 WILD-TYPE 24 52 30 45
'RPS27 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S35.  Gene #4: 'RPS27 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
RPS27 MUTATED 7 9 8
RPS27 WILD-TYPE 86 73 95
'RPS27 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S36.  Gene #4: 'RPS27 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
RPS27 MUTATED 6 13 5
RPS27 WILD-TYPE 57 154 43
'RPS27 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S37.  Gene #4: 'RPS27 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
RPS27 MUTATED 6 9 4 3 1
RPS27 WILD-TYPE 51 79 69 36 11
'RPS27 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.989 (Fisher's exact test), Q value = 1

Table S38.  Gene #4: 'RPS27 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
RPS27 MUTATED 7 6 3 7
RPS27 WILD-TYPE 66 65 31 84
'RPS27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S39.  Gene #4: 'RPS27 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
RPS27 MUTATED 9 9 5
RPS27 WILD-TYPE 81 87 78
'RPS27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S40.  Gene #4: 'RPS27 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
RPS27 MUTATED 12 8 2 1
RPS27 WILD-TYPE 102 71 51 22
'MRPS31 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S41.  Gene #5: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
MRPS31 MUTATED 7 3 3 6
MRPS31 WILD-TYPE 75 48 44 92
'MRPS31 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0266 (Fisher's exact test), Q value = 1

Table S42.  Gene #5: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
MRPS31 MUTATED 10 2 7
MRPS31 WILD-TYPE 91 103 65

Figure S4.  Get High-res Image Gene #5: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MRPS31 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.964 (Fisher's exact test), Q value = 1

Table S43.  Gene #5: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
MRPS31 MUTATED 2 4 1 2
MRPS31 WILD-TYPE 44 54 25 36
'MRPS31 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S44.  Gene #5: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
MRPS31 MUTATED 2 3 1 3
MRPS31 WILD-TYPE 25 55 33 46
'MRPS31 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S45.  Gene #5: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
MRPS31 MUTATED 5 3 11
MRPS31 WILD-TYPE 88 79 92
'MRPS31 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S46.  Gene #5: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
MRPS31 MUTATED 7 10 2
MRPS31 WILD-TYPE 56 157 46
'MRPS31 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 1

Table S47.  Gene #5: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
MRPS31 MUTATED 2 9 6 1 0
MRPS31 WILD-TYPE 55 79 67 38 12
'MRPS31 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S48.  Gene #5: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
MRPS31 MUTATED 5 4 1 8
MRPS31 WILD-TYPE 68 67 33 83
'MRPS31 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 1

Table S49.  Gene #5: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
MRPS31 MUTATED 3 10 5
MRPS31 WILD-TYPE 87 86 78
'MRPS31 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S50.  Gene #5: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
MRPS31 MUTATED 11 4 3 0
MRPS31 WILD-TYPE 103 75 50 23
'NF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S51.  Gene #6: 'NF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
NF1 MUTATED 15 4 6 13
NF1 WILD-TYPE 67 47 41 85
'NF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S52.  Gene #6: 'NF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
NF1 MUTATED 17 11 10
NF1 WILD-TYPE 84 94 62
'NF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S53.  Gene #6: 'NF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
NF1 MUTATED 6 9 3 9
NF1 WILD-TYPE 40 49 23 29
'NF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S54.  Gene #6: 'NF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
NF1 MUTATED 4 7 5 11
NF1 WILD-TYPE 23 51 29 38
'NF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 1

Table S55.  Gene #6: 'NF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
NF1 MUTATED 9 12 17
NF1 WILD-TYPE 84 70 86
'NF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0763 (Fisher's exact test), Q value = 1

Table S56.  Gene #6: 'NF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
NF1 MUTATED 14 20 4
NF1 WILD-TYPE 49 147 44
'NF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S57.  Gene #6: 'NF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
NF1 MUTATED 13 13 6 6 0
NF1 WILD-TYPE 44 75 67 33 12
'NF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S58.  Gene #6: 'NF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
NF1 MUTATED 12 10 5 11
NF1 WILD-TYPE 61 61 29 80
'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S59.  Gene #6: 'NF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
NF1 MUTATED 15 16 7
NF1 WILD-TYPE 75 80 76
'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S60.  Gene #6: 'NF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
NF1 MUTATED 20 9 6 3
NF1 WILD-TYPE 94 70 47 20
'RAC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0148 (Fisher's exact test), Q value = 1

Table S61.  Gene #7: 'RAC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
RAC1 MUTATED 10 1 0 9
RAC1 WILD-TYPE 72 50 47 89

Figure S5.  Get High-res Image Gene #7: 'RAC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RAC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.587 (Fisher's exact test), Q value = 1

Table S62.  Gene #7: 'RAC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
RAC1 MUTATED 6 10 4
RAC1 WILD-TYPE 95 95 68
'RAC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S63.  Gene #7: 'RAC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
RAC1 MUTATED 5 3 1 4
RAC1 WILD-TYPE 41 55 25 34
'RAC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S64.  Gene #7: 'RAC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
RAC1 MUTATED 1 7 3 2
RAC1 WILD-TYPE 26 51 31 47
'RAC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S65.  Gene #7: 'RAC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
RAC1 MUTATED 5 8 7
RAC1 WILD-TYPE 88 74 96
'RAC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S66.  Gene #7: 'RAC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
RAC1 MUTATED 4 14 2
RAC1 WILD-TYPE 59 153 46
'RAC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S67.  Gene #7: 'RAC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
RAC1 MUTATED 7 5 3 5 0
RAC1 WILD-TYPE 50 83 70 34 12
'RAC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S68.  Gene #7: 'RAC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
RAC1 MUTATED 3 7 4 6
RAC1 WILD-TYPE 70 64 30 85
'RAC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 1

Table S69.  Gene #7: 'RAC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
RAC1 MUTATED 11 6 3
RAC1 WILD-TYPE 79 90 80
'RAC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S70.  Gene #7: 'RAC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
RAC1 MUTATED 8 9 1 2
RAC1 WILD-TYPE 106 70 52 21
'ARID2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S71.  Gene #8: 'ARID2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
ARID2 MUTATED 11 5 6 13
ARID2 WILD-TYPE 71 46 41 85
'ARID2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 1

Table S72.  Gene #8: 'ARID2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
ARID2 MUTATED 18 11 6
ARID2 WILD-TYPE 83 94 66
'ARID2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.67 (Fisher's exact test), Q value = 1

Table S73.  Gene #8: 'ARID2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ARID2 MUTATED 8 10 2 5
ARID2 WILD-TYPE 38 48 24 33
'ARID2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S74.  Gene #8: 'ARID2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
ARID2 MUTATED 4 11 4 6
ARID2 WILD-TYPE 23 47 30 43
'ARID2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S75.  Gene #8: 'ARID2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
ARID2 MUTATED 11 12 12
ARID2 WILD-TYPE 82 70 91
'ARID2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S76.  Gene #8: 'ARID2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
ARID2 MUTATED 9 22 4
ARID2 WILD-TYPE 54 145 44
'ARID2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S77.  Gene #8: 'ARID2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
ARID2 MUTATED 4 11 10 8 0
ARID2 WILD-TYPE 53 77 63 31 12
'ARID2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 1

Table S78.  Gene #8: 'ARID2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
ARID2 MUTATED 7 6 8 12
ARID2 WILD-TYPE 66 65 26 79
'ARID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S79.  Gene #8: 'ARID2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
ARID2 MUTATED 10 12 11
ARID2 WILD-TYPE 80 84 72
'ARID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.539 (Fisher's exact test), Q value = 1

Table S80.  Gene #8: 'ARID2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
ARID2 MUTATED 13 9 6 5
ARID2 WILD-TYPE 101 70 47 18
'C15ORF23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S81.  Gene #9: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
C15ORF23 MUTATED 4 4 3 8
C15ORF23 WILD-TYPE 78 47 44 90
'C15ORF23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0597 (Fisher's exact test), Q value = 1

Table S82.  Gene #9: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
C15ORF23 MUTATED 10 8 1
C15ORF23 WILD-TYPE 91 97 71
'C15ORF23 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S83.  Gene #9: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
C15ORF23 MUTATED 4 3 2 1
C15ORF23 WILD-TYPE 42 55 24 37
'C15ORF23 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S84.  Gene #9: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
C15ORF23 MUTATED 2 3 1 4
C15ORF23 WILD-TYPE 25 55 33 45
'C15ORF23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S85.  Gene #9: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
C15ORF23 MUTATED 6 7 6
C15ORF23 WILD-TYPE 87 75 97
'C15ORF23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S86.  Gene #9: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
C15ORF23 MUTATED 3 15 1
C15ORF23 WILD-TYPE 60 152 47
'C15ORF23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S87.  Gene #9: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
C15ORF23 MUTATED 3 5 5 2 1
C15ORF23 WILD-TYPE 54 83 68 37 11
'C15ORF23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S88.  Gene #9: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
C15ORF23 MUTATED 6 4 1 5
C15ORF23 WILD-TYPE 67 67 33 86
'C15ORF23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S89.  Gene #9: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
C15ORF23 MUTATED 5 7 4
C15ORF23 WILD-TYPE 85 89 79
'C15ORF23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.958 (Fisher's exact test), Q value = 1

Table S90.  Gene #9: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
C15ORF23 MUTATED 7 4 4 1
C15ORF23 WILD-TYPE 107 75 49 22
'PTEN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 1

Table S91.  Gene #10: 'PTEN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
PTEN MUTATED 8 6 4 5
PTEN WILD-TYPE 74 45 43 93
'PTEN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0742 (Fisher's exact test), Q value = 1

Table S92.  Gene #10: 'PTEN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
PTEN MUTATED 10 4 9
PTEN WILD-TYPE 91 101 63
'PTEN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0187 (Fisher's exact test), Q value = 1

Table S93.  Gene #10: 'PTEN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PTEN MUTATED 5 8 0 0
PTEN WILD-TYPE 41 50 26 38

Figure S6.  Get High-res Image Gene #10: 'PTEN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PTEN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0835 (Fisher's exact test), Q value = 1

Table S94.  Gene #10: 'PTEN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
PTEN MUTATED 1 8 0 4
PTEN WILD-TYPE 26 50 34 45
'PTEN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S95.  Gene #10: 'PTEN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
PTEN MUTATED 11 6 6
PTEN WILD-TYPE 82 76 97
'PTEN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00344 (Fisher's exact test), Q value = 1

Table S96.  Gene #10: 'PTEN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
PTEN MUTATED 7 7 9
PTEN WILD-TYPE 56 160 39

Figure S7.  Get High-res Image Gene #10: 'PTEN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 1

Table S97.  Gene #10: 'PTEN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
PTEN MUTATED 2 6 7 6 2
PTEN WILD-TYPE 55 82 66 33 10
'PTEN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0455 (Fisher's exact test), Q value = 1

Table S98.  Gene #10: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
PTEN MUTATED 2 5 6 10
PTEN WILD-TYPE 71 66 28 81

Figure S8.  Get High-res Image Gene #10: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S99.  Gene #10: 'PTEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
PTEN MUTATED 9 6 8
PTEN WILD-TYPE 81 90 75
'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S100.  Gene #10: 'PTEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
PTEN MUTATED 6 8 5 4
PTEN WILD-TYPE 108 71 48 19
'NOTCH2NL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S101.  Gene #11: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
NOTCH2NL MUTATED 6 1 3 5
NOTCH2NL WILD-TYPE 76 50 44 93
'NOTCH2NL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S102.  Gene #11: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
NOTCH2NL MUTATED 7 4 4
NOTCH2NL WILD-TYPE 94 101 68
'NOTCH2NL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 1

Table S103.  Gene #11: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
NOTCH2NL MUTATED 3 3 0 3
NOTCH2NL WILD-TYPE 43 55 26 35
'NOTCH2NL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S104.  Gene #11: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
NOTCH2NL MUTATED 4 3 1 1
NOTCH2NL WILD-TYPE 23 55 33 48
'NOTCH2NL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0192 (Fisher's exact test), Q value = 1

Table S105.  Gene #11: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
NOTCH2NL MUTATED 10 1 4
NOTCH2NL WILD-TYPE 83 81 99

Figure S9.  Get High-res Image Gene #11: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NOTCH2NL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 1

Table S106.  Gene #11: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
NOTCH2NL MUTATED 3 7 5
NOTCH2NL WILD-TYPE 60 160 43
'NOTCH2NL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S107.  Gene #11: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
NOTCH2NL MUTATED 3 3 4 3 2
NOTCH2NL WILD-TYPE 54 85 69 36 10
'NOTCH2NL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S108.  Gene #11: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
NOTCH2NL MUTATED 2 6 3 4
NOTCH2NL WILD-TYPE 71 65 31 87
'NOTCH2NL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0663 (Fisher's exact test), Q value = 1

Table S109.  Gene #11: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
NOTCH2NL MUTATED 9 2 4
NOTCH2NL WILD-TYPE 81 94 79
'NOTCH2NL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S110.  Gene #11: 'NOTCH2NL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
NOTCH2NL MUTATED 4 7 2 2
NOTCH2NL WILD-TYPE 110 72 51 21
'MAP2K1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0181 (Fisher's exact test), Q value = 1

Table S111.  Gene #12: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
MAP2K1 MUTATED 1 0 4 8
MAP2K1 WILD-TYPE 81 51 43 90

Figure S10.  Get High-res Image Gene #12: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MAP2K1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00041 (Fisher's exact test), Q value = 0.6

Table S112.  Gene #12: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
MAP2K1 MUTATED 0 11 2
MAP2K1 WILD-TYPE 101 94 70

Figure S11.  Get High-res Image Gene #12: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MAP2K1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S113.  Gene #12: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
MAP2K1 MUTATED 5 2 1 1
MAP2K1 WILD-TYPE 41 56 25 37
'MAP2K1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0218 (Fisher's exact test), Q value = 1

Table S114.  Gene #12: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
MAP2K1 MUTATED 5 1 1 2
MAP2K1 WILD-TYPE 22 57 33 47

Figure S12.  Get High-res Image Gene #12: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MAP2K1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S115.  Gene #12: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
MAP2K1 MUTATED 6 5 2
MAP2K1 WILD-TYPE 87 77 101
'MAP2K1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0959 (Fisher's exact test), Q value = 1

Table S116.  Gene #12: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
MAP2K1 MUTATED 1 7 5
MAP2K1 WILD-TYPE 62 160 43
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0195 (Fisher's exact test), Q value = 1

Table S117.  Gene #12: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
MAP2K1 MUTATED 0 2 8 2 1
MAP2K1 WILD-TYPE 57 86 65 37 11

Figure S13.  Get High-res Image Gene #12: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S118.  Gene #12: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
MAP2K1 MUTATED 3 5 2 3
MAP2K1 WILD-TYPE 70 66 32 88
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 1

Table S119.  Gene #12: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
MAP2K1 MUTATED 2 4 7
MAP2K1 WILD-TYPE 88 92 76
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 1

Table S120.  Gene #12: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
MAP2K1 MUTATED 3 5 3 2
MAP2K1 WILD-TYPE 111 74 50 21
'PPP6C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.641 (Fisher's exact test), Q value = 1

Table S121.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
PPP6C MUTATED 6 2 5 7
PPP6C WILD-TYPE 76 49 42 91
'PPP6C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S122.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
PPP6C MUTATED 10 6 4
PPP6C WILD-TYPE 91 99 68
'PPP6C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S123.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PPP6C MUTATED 5 2 2 2
PPP6C WILD-TYPE 41 56 24 36
'PPP6C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 1

Table S124.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
PPP6C MUTATED 4 2 2 3
PPP6C WILD-TYPE 23 56 32 46
'PPP6C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S125.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
PPP6C MUTATED 8 6 6
PPP6C WILD-TYPE 85 76 97
'PPP6C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 1

Table S126.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
PPP6C MUTATED 3 11 6
PPP6C WILD-TYPE 60 156 42
'PPP6C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 1

Table S127.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
PPP6C MUTATED 2 6 4 6 2
PPP6C WILD-TYPE 55 82 69 33 10
'PPP6C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0668 (Fisher's exact test), Q value = 1

Table S128.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
PPP6C MUTATED 2 5 6 7
PPP6C WILD-TYPE 71 66 28 84
'PPP6C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S129.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
PPP6C MUTATED 9 4 7
PPP6C WILD-TYPE 81 92 76
'PPP6C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S130.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
PPP6C MUTATED 7 8 2 3
PPP6C WILD-TYPE 107 71 51 20
'IDH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0839 (Fisher's exact test), Q value = 1

Table S131.  Gene #14: 'IDH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
IDH1 MUTATED 4 6 0 6
IDH1 WILD-TYPE 78 45 47 92
'IDH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S132.  Gene #14: 'IDH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
IDH1 MUTATED 9 5 2
IDH1 WILD-TYPE 92 100 70
'IDH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S133.  Gene #14: 'IDH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
IDH1 MUTATED 1 4 1 3
IDH1 WILD-TYPE 45 54 25 35
'IDH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 1

Table S134.  Gene #14: 'IDH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
IDH1 MUTATED 0 6 2 1
IDH1 WILD-TYPE 27 52 32 48
'IDH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 1

Table S135.  Gene #14: 'IDH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
IDH1 MUTATED 2 7 7
IDH1 WILD-TYPE 91 75 96
'IDH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S136.  Gene #14: 'IDH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
IDH1 MUTATED 4 10 2
IDH1 WILD-TYPE 59 157 46
'IDH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S137.  Gene #14: 'IDH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
IDH1 MUTATED 1 8 3 3 0
IDH1 WILD-TYPE 56 80 70 36 12
'IDH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 1

Table S138.  Gene #14: 'IDH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
IDH1 MUTATED 5 2 3 5
IDH1 WILD-TYPE 68 69 31 86
'IDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 1

Table S139.  Gene #14: 'IDH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
IDH1 MUTATED 3 9 3
IDH1 WILD-TYPE 87 87 80
'IDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0961 (Fisher's exact test), Q value = 1

Table S140.  Gene #14: 'IDH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
IDH1 MUTATED 9 2 1 3
IDH1 WILD-TYPE 105 77 52 20
'PDE1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S141.  Gene #15: 'PDE1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
PDE1A MUTATED 13 9 5 12
PDE1A WILD-TYPE 69 42 42 86
'PDE1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S142.  Gene #15: 'PDE1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
PDE1A MUTATED 17 14 8
PDE1A WILD-TYPE 84 91 64
'PDE1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S143.  Gene #15: 'PDE1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PDE1A MUTATED 7 8 6 7
PDE1A WILD-TYPE 39 50 20 31
'PDE1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S144.  Gene #15: 'PDE1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
PDE1A MUTATED 6 7 6 9
PDE1A WILD-TYPE 21 51 28 40
'PDE1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.023 (Fisher's exact test), Q value = 1

Table S145.  Gene #15: 'PDE1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
PDE1A MUTATED 6 16 17
PDE1A WILD-TYPE 87 66 86

Figure S14.  Get High-res Image Gene #15: 'PDE1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PDE1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0805 (Fisher's exact test), Q value = 1

Table S146.  Gene #15: 'PDE1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
PDE1A MUTATED 10 27 2
PDE1A WILD-TYPE 53 140 46
'PDE1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S147.  Gene #15: 'PDE1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
PDE1A MUTATED 5 16 11 6 0
PDE1A WILD-TYPE 52 72 62 33 12
'PDE1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 1

Table S148.  Gene #15: 'PDE1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
PDE1A MUTATED 9 6 4 19
PDE1A WILD-TYPE 64 65 30 72
'PDE1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S149.  Gene #15: 'PDE1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
PDE1A MUTATED 8 17 13
PDE1A WILD-TYPE 82 79 70
'PDE1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S150.  Gene #15: 'PDE1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
PDE1A MUTATED 20 6 9 3
PDE1A WILD-TYPE 94 73 44 20
'HMGCR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S151.  Gene #16: 'HMGCR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
HMGCR MUTATED 3 1 2 5
HMGCR WILD-TYPE 79 50 45 93
'HMGCR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S152.  Gene #16: 'HMGCR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
HMGCR MUTATED 6 4 1
HMGCR WILD-TYPE 95 101 71
'HMGCR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S153.  Gene #16: 'HMGCR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
HMGCR MUTATED 1 2 1 4
HMGCR WILD-TYPE 45 56 25 34
'HMGCR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S154.  Gene #16: 'HMGCR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
HMGCR MUTATED 0 4 2 2
HMGCR WILD-TYPE 27 54 32 47
'HMGCR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S155.  Gene #16: 'HMGCR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
HMGCR MUTATED 3 5 3
HMGCR WILD-TYPE 90 77 100
'HMGCR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 1

Table S156.  Gene #16: 'HMGCR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
HMGCR MUTATED 2 9 0
HMGCR WILD-TYPE 61 158 48
'HMGCR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S157.  Gene #16: 'HMGCR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
HMGCR MUTATED 3 5 1 2 0
HMGCR WILD-TYPE 54 83 72 37 12
'HMGCR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S158.  Gene #16: 'HMGCR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
HMGCR MUTATED 1 5 0 5
HMGCR WILD-TYPE 72 66 34 86
'HMGCR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S159.  Gene #16: 'HMGCR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
HMGCR MUTATED 4 6 1
HMGCR WILD-TYPE 86 90 82
'HMGCR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.606 (Fisher's exact test), Q value = 1

Table S160.  Gene #16: 'HMGCR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
HMGCR MUTATED 5 5 1 0
HMGCR WILD-TYPE 109 74 52 23
'PHGDH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S161.  Gene #17: 'PHGDH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
PHGDH MUTATED 4 1 1 6
PHGDH WILD-TYPE 78 50 46 92
'PHGDH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S162.  Gene #17: 'PHGDH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
PHGDH MUTATED 5 6 1
PHGDH WILD-TYPE 96 99 71
'PHGDH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S163.  Gene #17: 'PHGDH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PHGDH MUTATED 3 1 2 2
PHGDH WILD-TYPE 43 57 24 36
'PHGDH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S164.  Gene #17: 'PHGDH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
PHGDH MUTATED 2 2 0 4
PHGDH WILD-TYPE 25 56 34 45
'PHGDH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S165.  Gene #17: 'PHGDH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
PHGDH MUTATED 4 4 4
PHGDH WILD-TYPE 89 78 99
'PHGDH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S166.  Gene #17: 'PHGDH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
PHGDH MUTATED 1 8 3
PHGDH WILD-TYPE 62 159 45
'PHGDH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S167.  Gene #17: 'PHGDH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
PHGDH MUTATED 2 2 5 3 0
PHGDH WILD-TYPE 55 86 68 36 12
'PHGDH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 1

Table S168.  Gene #17: 'PHGDH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
PHGDH MUTATED 1 5 2 4
PHGDH WILD-TYPE 72 66 32 87
'PHGDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 1

Table S169.  Gene #17: 'PHGDH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
PHGDH MUTATED 4 3 5
PHGDH WILD-TYPE 86 93 78
'PHGDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.359 (Fisher's exact test), Q value = 1

Table S170.  Gene #17: 'PHGDH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
PHGDH MUTATED 4 5 1 2
PHGDH WILD-TYPE 110 74 52 21
'SLC38A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S171.  Gene #18: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
SLC38A4 MUTATED 9 8 4 13
SLC38A4 WILD-TYPE 73 43 43 85
'SLC38A4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 1

Table S172.  Gene #18: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
SLC38A4 MUTATED 13 16 5
SLC38A4 WILD-TYPE 88 89 67
'SLC38A4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S173.  Gene #18: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
SLC38A4 MUTATED 7 7 4 2
SLC38A4 WILD-TYPE 39 51 22 36
'SLC38A4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S174.  Gene #18: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
SLC38A4 MUTATED 4 6 3 7
SLC38A4 WILD-TYPE 23 52 31 42
'SLC38A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00962 (Fisher's exact test), Q value = 1

Table S175.  Gene #18: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
SLC38A4 MUTATED 7 18 9
SLC38A4 WILD-TYPE 86 64 94

Figure S15.  Get High-res Image Gene #18: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SLC38A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 1

Table S176.  Gene #18: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
SLC38A4 MUTATED 5 26 3
SLC38A4 WILD-TYPE 58 141 45
'SLC38A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S177.  Gene #18: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
SLC38A4 MUTATED 9 9 8 5 1
SLC38A4 WILD-TYPE 48 79 65 34 11
'SLC38A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S178.  Gene #18: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
SLC38A4 MUTATED 11 9 4 8
SLC38A4 WILD-TYPE 62 62 30 83
'SLC38A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S179.  Gene #18: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
SLC38A4 MUTATED 11 11 10
SLC38A4 WILD-TYPE 79 85 73
'SLC38A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S180.  Gene #18: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
SLC38A4 MUTATED 14 9 5 4
SLC38A4 WILD-TYPE 100 70 48 19
'CDK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S181.  Gene #19: 'CDK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
CDK4 MUTATED 3 1 0 3
CDK4 WILD-TYPE 79 50 47 95
'CDK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S182.  Gene #19: 'CDK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
CDK4 MUTATED 1 3 3
CDK4 WILD-TYPE 100 102 69
'CDK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0432 (Fisher's exact test), Q value = 1

Table S183.  Gene #19: 'CDK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CDK4 MUTATED 2 0 2 0
CDK4 WILD-TYPE 44 58 24 38

Figure S16.  Get High-res Image Gene #19: 'CDK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CDK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S184.  Gene #19: 'CDK4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
CDK4 MUTATED 1 1 1 1
CDK4 WILD-TYPE 26 57 33 48
'CDK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S185.  Gene #19: 'CDK4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
CDK4 MUTATED 2 2 3
CDK4 WILD-TYPE 91 80 100
'CDK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S186.  Gene #19: 'CDK4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
CDK4 MUTATED 3 3 1
CDK4 WILD-TYPE 60 164 47
'CDK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S187.  Gene #19: 'CDK4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
CDK4 MUTATED 2 1 2 1 0
CDK4 WILD-TYPE 55 87 71 38 12
'CDK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S188.  Gene #19: 'CDK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
CDK4 MUTATED 1 3 1 1
CDK4 WILD-TYPE 72 68 33 90
'CDK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S189.  Gene #19: 'CDK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
CDK4 MUTATED 2 1 3
CDK4 WILD-TYPE 88 95 80
'CDK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S190.  Gene #19: 'CDK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
CDK4 MUTATED 1 2 2 1
CDK4 WILD-TYPE 113 77 51 22
'FAM58A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S191.  Gene #20: 'FAM58A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
FAM58A MUTATED 2 0 1 2
FAM58A WILD-TYPE 80 51 46 96
'FAM58A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S192.  Gene #20: 'FAM58A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
FAM58A MUTATED 1 3 1
FAM58A WILD-TYPE 100 102 71
'FAM58A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S193.  Gene #20: 'FAM58A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
FAM58A MUTATED 1 1 1 1
FAM58A WILD-TYPE 45 57 25 37
'FAM58A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S194.  Gene #20: 'FAM58A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
FAM58A MUTATED 0 1 1 2
FAM58A WILD-TYPE 27 57 33 47
'FAM58A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S195.  Gene #20: 'FAM58A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
FAM58A MUTATED 0 3 2
FAM58A WILD-TYPE 93 79 101
'FAM58A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 1

Table S196.  Gene #20: 'FAM58A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
FAM58A MUTATED 2 3 0
FAM58A WILD-TYPE 61 164 48
'FAM58A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0546 (Fisher's exact test), Q value = 1

Table S197.  Gene #20: 'FAM58A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
FAM58A MUTATED 4 1 0 0 0
FAM58A WILD-TYPE 53 87 73 39 12
'FAM58A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00477 (Fisher's exact test), Q value = 1

Table S198.  Gene #20: 'FAM58A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
FAM58A MUTATED 5 0 0 0
FAM58A WILD-TYPE 68 71 34 91

Figure S17.  Get High-res Image Gene #20: 'FAM58A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FAM58A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S199.  Gene #20: 'FAM58A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
FAM58A MUTATED 1 4 0
FAM58A WILD-TYPE 89 92 83
'FAM58A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 1

Table S200.  Gene #20: 'FAM58A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
FAM58A MUTATED 4 0 1 0
FAM58A WILD-TYPE 110 79 52 23
'EMG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.967 (Fisher's exact test), Q value = 1

Table S201.  Gene #21: 'EMG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
EMG1 MUTATED 3 1 1 4
EMG1 WILD-TYPE 79 50 46 94
'EMG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S202.  Gene #21: 'EMG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
EMG1 MUTATED 4 3 2
EMG1 WILD-TYPE 97 102 70
'EMG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S203.  Gene #21: 'EMG1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
EMG1 MUTATED 2 1 1 0
EMG1 WILD-TYPE 44 57 25 38
'EMG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 1

Table S204.  Gene #21: 'EMG1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
EMG1 MUTATED 1 1 2 0
EMG1 WILD-TYPE 26 57 32 49
'EMG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S205.  Gene #21: 'EMG1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
EMG1 MUTATED 5 2 2
EMG1 WILD-TYPE 88 80 101
'EMG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0205 (Fisher's exact test), Q value = 1

Table S206.  Gene #21: 'EMG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
EMG1 MUTATED 3 2 4
EMG1 WILD-TYPE 60 165 44

Figure S18.  Get High-res Image Gene #21: 'EMG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EMG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S207.  Gene #21: 'EMG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
EMG1 MUTATED 2 2 4 1 0
EMG1 WILD-TYPE 55 86 69 38 12
'EMG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.964 (Fisher's exact test), Q value = 1

Table S208.  Gene #21: 'EMG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
EMG1 MUTATED 2 3 1 3
EMG1 WILD-TYPE 71 68 33 88
'EMG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S209.  Gene #21: 'EMG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
EMG1 MUTATED 3 2 4
EMG1 WILD-TYPE 87 94 79
'EMG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S210.  Gene #21: 'EMG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
EMG1 MUTATED 2 3 3 1
EMG1 WILD-TYPE 112 76 50 22
'RQCD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0653 (Fisher's exact test), Q value = 1

Table S211.  Gene #22: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
RQCD1 MUTATED 6 2 0 1
RQCD1 WILD-TYPE 76 49 47 97
'RQCD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 1

Table S212.  Gene #22: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
RQCD1 MUTATED 5 1 3
RQCD1 WILD-TYPE 96 104 69
'RQCD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0864 (Fisher's exact test), Q value = 1

Table S213.  Gene #22: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
RQCD1 MUTATED 0 3 2 0
RQCD1 WILD-TYPE 46 55 24 38
'RQCD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.929 (Fisher's exact test), Q value = 1

Table S214.  Gene #22: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
RQCD1 MUTATED 0 2 1 2
RQCD1 WILD-TYPE 27 56 33 47
'RQCD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S215.  Gene #22: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
RQCD1 MUTATED 2 2 5
RQCD1 WILD-TYPE 91 80 98
'RQCD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S216.  Gene #22: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
RQCD1 MUTATED 3 4 2
RQCD1 WILD-TYPE 60 163 46
'RQCD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S217.  Gene #22: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
RQCD1 MUTATED 3 4 1 1 0
RQCD1 WILD-TYPE 54 84 72 38 12
'RQCD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S218.  Gene #22: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
RQCD1 MUTATED 0 2 1 6
RQCD1 WILD-TYPE 73 69 33 85
'RQCD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S219.  Gene #22: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
RQCD1 MUTATED 4 4 1
RQCD1 WILD-TYPE 86 92 82
'RQCD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.959 (Fisher's exact test), Q value = 1

Table S220.  Gene #22: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
RQCD1 MUTATED 4 2 2 1
RQCD1 WILD-TYPE 110 77 51 22
'HSD11B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S221.  Gene #23: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
HSD11B1 MUTATED 4 2 1 7
HSD11B1 WILD-TYPE 78 49 46 91
'HSD11B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S222.  Gene #23: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
HSD11B1 MUTATED 5 8 1
HSD11B1 WILD-TYPE 96 97 71
'HSD11B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S223.  Gene #23: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
HSD11B1 MUTATED 3 2 0 1
HSD11B1 WILD-TYPE 43 56 26 37
'HSD11B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S224.  Gene #23: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
HSD11B1 MUTATED 3 1 1 1
HSD11B1 WILD-TYPE 24 57 33 48
'HSD11B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 1

Table S225.  Gene #23: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
HSD11B1 MUTATED 2 6 6
HSD11B1 WILD-TYPE 91 76 97
'HSD11B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S226.  Gene #23: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
HSD11B1 MUTATED 1 11 2
HSD11B1 WILD-TYPE 62 156 46
'HSD11B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S227.  Gene #23: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
HSD11B1 MUTATED 3 4 2 4 1
HSD11B1 WILD-TYPE 54 84 71 35 11
'HSD11B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S228.  Gene #23: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
HSD11B1 MUTATED 3 4 2 5
HSD11B1 WILD-TYPE 70 67 32 86
'HSD11B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S229.  Gene #23: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
HSD11B1 MUTATED 6 3 5
HSD11B1 WILD-TYPE 84 93 78
'HSD11B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 1

Table S230.  Gene #23: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
HSD11B1 MUTATED 6 6 0 2
HSD11B1 WILD-TYPE 108 73 53 21
'DMC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S231.  Gene #24: 'DMC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
DMC1 MUTATED 3 1 2 6
DMC1 WILD-TYPE 79 50 45 92
'DMC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 1

Table S232.  Gene #24: 'DMC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
DMC1 MUTATED 5 6 1
DMC1 WILD-TYPE 96 99 71
'DMC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S233.  Gene #24: 'DMC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
DMC1 MUTATED 5 2 1 0
DMC1 WILD-TYPE 41 56 25 38
'DMC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S234.  Gene #24: 'DMC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
DMC1 MUTATED 3 2 2 1
DMC1 WILD-TYPE 24 56 32 48
'DMC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00652 (Fisher's exact test), Q value = 1

Table S235.  Gene #24: 'DMC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
DMC1 MUTATED 7 5 0
DMC1 WILD-TYPE 86 77 103

Figure S19.  Get High-res Image Gene #24: 'DMC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DMC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S236.  Gene #24: 'DMC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
DMC1 MUTATED 2 7 3
DMC1 WILD-TYPE 61 160 45
'DMC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0886 (Fisher's exact test), Q value = 1

Table S237.  Gene #24: 'DMC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
DMC1 MUTATED 1 2 8 1 0
DMC1 WILD-TYPE 56 86 65 38 12
'DMC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S238.  Gene #24: 'DMC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
DMC1 MUTATED 3 5 1 3
DMC1 WILD-TYPE 70 66 33 88
'DMC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0242 (Fisher's exact test), Q value = 1

Table S239.  Gene #24: 'DMC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
DMC1 MUTATED 3 1 8
DMC1 WILD-TYPE 87 95 75

Figure S20.  Get High-res Image Gene #24: 'DMC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'DMC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0306 (Fisher's exact test), Q value = 1

Table S240.  Gene #24: 'DMC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
DMC1 MUTATED 1 5 5 1
DMC1 WILD-TYPE 113 74 48 22

Figure S21.  Get High-res Image Gene #24: 'DMC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NRK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S241.  Gene #25: 'NRK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
NRK MUTATED 9 7 6 22
NRK WILD-TYPE 73 44 41 76
'NRK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S242.  Gene #25: 'NRK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
NRK MUTATED 18 18 8
NRK WILD-TYPE 83 87 64
'NRK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S243.  Gene #25: 'NRK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
NRK MUTATED 7 4 3 3
NRK WILD-TYPE 39 54 23 35
'NRK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S244.  Gene #25: 'NRK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
NRK MUTATED 3 5 2 7
NRK WILD-TYPE 24 53 32 42
'NRK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S245.  Gene #25: 'NRK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
NRK MUTATED 11 14 19
NRK WILD-TYPE 82 68 84
'NRK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S246.  Gene #25: 'NRK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
NRK MUTATED 11 27 6
NRK WILD-TYPE 52 140 42
'NRK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.989 (Fisher's exact test), Q value = 1

Table S247.  Gene #25: 'NRK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
NRK MUTATED 8 12 11 6 2
NRK WILD-TYPE 49 76 62 33 10
'NRK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S248.  Gene #25: 'NRK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
NRK MUTATED 14 9 4 12
NRK WILD-TYPE 59 62 30 79
'NRK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S249.  Gene #25: 'NRK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
NRK MUTATED 12 16 11
NRK WILD-TYPE 78 80 72
'NRK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.993 (Fisher's exact test), Q value = 1

Table S250.  Gene #25: 'NRK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
NRK MUTATED 17 12 7 3
NRK WILD-TYPE 97 67 46 20
'TAF1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S251.  Gene #26: 'TAF1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
TAF1A MUTATED 6 1 2 4
TAF1A WILD-TYPE 76 50 45 94
'TAF1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S252.  Gene #26: 'TAF1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
TAF1A MUTATED 5 4 4
TAF1A WILD-TYPE 96 101 68
'TAF1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S253.  Gene #26: 'TAF1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
TAF1A MUTATED 3 3 1 3
TAF1A WILD-TYPE 43 55 25 35
'TAF1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S254.  Gene #26: 'TAF1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
TAF1A MUTATED 1 3 2 4
TAF1A WILD-TYPE 26 55 32 45
'TAF1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S255.  Gene #26: 'TAF1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
TAF1A MUTATED 4 4 5
TAF1A WILD-TYPE 89 78 98
'TAF1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S256.  Gene #26: 'TAF1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
TAF1A MUTATED 4 7 2
TAF1A WILD-TYPE 59 160 46
'TAF1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S257.  Gene #26: 'TAF1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
TAF1A MUTATED 2 8 1 2 0
TAF1A WILD-TYPE 55 80 72 37 12
'TAF1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S258.  Gene #26: 'TAF1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
TAF1A MUTATED 4 2 1 6
TAF1A WILD-TYPE 69 69 33 85
'TAF1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0355 (Fisher's exact test), Q value = 1

Table S259.  Gene #26: 'TAF1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
TAF1A MUTATED 3 9 1
TAF1A WILD-TYPE 87 87 82

Figure S22.  Get High-res Image Gene #26: 'TAF1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TAF1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S260.  Gene #26: 'TAF1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
TAF1A MUTATED 6 2 4 1
TAF1A WILD-TYPE 108 77 49 22
'OXA1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S261.  Gene #27: 'OXA1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
OXA1L MUTATED 4 2 0 2
OXA1L WILD-TYPE 78 49 47 96
'OXA1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S262.  Gene #27: 'OXA1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
OXA1L MUTATED 5 1 2
OXA1L WILD-TYPE 96 104 70
'OXA1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S263.  Gene #27: 'OXA1L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
OXA1L MUTATED 1 2 1 1
OXA1L WILD-TYPE 45 56 25 37
'OXA1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S264.  Gene #27: 'OXA1L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
OXA1L MUTATED 0 1 1 3
OXA1L WILD-TYPE 27 57 33 46
'OXA1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S265.  Gene #27: 'OXA1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
OXA1L MUTATED 1 3 4
OXA1L WILD-TYPE 92 79 99
'OXA1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S266.  Gene #27: 'OXA1L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
OXA1L MUTATED 3 5 0
OXA1L WILD-TYPE 60 162 48
'OXA1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S267.  Gene #27: 'OXA1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
OXA1L MUTATED 2 3 1 2 0
OXA1L WILD-TYPE 55 85 72 37 12
'OXA1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S268.  Gene #27: 'OXA1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
OXA1L MUTATED 4 1 1 2
OXA1L WILD-TYPE 69 70 33 89
'OXA1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 1

Table S269.  Gene #27: 'OXA1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
OXA1L MUTATED 4 3 1
OXA1L WILD-TYPE 86 93 82
'OXA1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 1

Table S270.  Gene #27: 'OXA1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
OXA1L MUTATED 6 1 0 1
OXA1L WILD-TYPE 108 78 53 22
'COL3A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S271.  Gene #28: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
COL3A1 MUTATED 14 9 14 20
COL3A1 WILD-TYPE 68 42 33 78
'COL3A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S272.  Gene #28: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
COL3A1 MUTATED 21 21 15
COL3A1 WILD-TYPE 80 84 57
'COL3A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S273.  Gene #28: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
COL3A1 MUTATED 9 12 6 9
COL3A1 WILD-TYPE 37 46 20 29
'COL3A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 1

Table S274.  Gene #28: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
COL3A1 MUTATED 7 12 3 14
COL3A1 WILD-TYPE 20 46 31 35
'COL3A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S275.  Gene #28: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
COL3A1 MUTATED 24 15 18
COL3A1 WILD-TYPE 69 67 85
'COL3A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S276.  Gene #28: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
COL3A1 MUTATED 16 29 12
COL3A1 WILD-TYPE 47 138 36
'COL3A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S277.  Gene #28: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
COL3A1 MUTATED 12 16 16 7 3
COL3A1 WILD-TYPE 45 72 57 32 9
'COL3A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S278.  Gene #28: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
COL3A1 MUTATED 14 17 8 15
COL3A1 WILD-TYPE 59 54 26 76
'COL3A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S279.  Gene #28: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
COL3A1 MUTATED 18 18 18
COL3A1 WILD-TYPE 72 78 65
'COL3A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S280.  Gene #28: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
COL3A1 MUTATED 24 19 7 4
COL3A1 WILD-TYPE 90 60 46 19
'TCHHL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S281.  Gene #29: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
TCHHL1 MUTATED 15 6 6 12
TCHHL1 WILD-TYPE 67 45 41 86
'TCHHL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S282.  Gene #29: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
TCHHL1 MUTATED 15 17 7
TCHHL1 WILD-TYPE 86 88 65
'TCHHL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0355 (Fisher's exact test), Q value = 1

Table S283.  Gene #29: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
TCHHL1 MUTATED 11 3 4 7
TCHHL1 WILD-TYPE 35 55 22 31

Figure S23.  Get High-res Image Gene #29: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TCHHL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S284.  Gene #29: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
TCHHL1 MUTATED 7 10 4 4
TCHHL1 WILD-TYPE 20 48 30 45
'TCHHL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S285.  Gene #29: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
TCHHL1 MUTATED 12 16 11
TCHHL1 WILD-TYPE 81 66 92
'TCHHL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S286.  Gene #29: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
TCHHL1 MUTATED 5 28 6
TCHHL1 WILD-TYPE 58 139 42
'TCHHL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S287.  Gene #29: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
TCHHL1 MUTATED 8 12 10 7 2
TCHHL1 WILD-TYPE 49 76 63 32 10
'TCHHL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S288.  Gene #29: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
TCHHL1 MUTATED 9 11 6 13
TCHHL1 WILD-TYPE 64 60 28 78
'TCHHL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S289.  Gene #29: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
TCHHL1 MUTATED 14 15 10
TCHHL1 WILD-TYPE 76 81 73
'TCHHL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.968 (Fisher's exact test), Q value = 1

Table S290.  Gene #29: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
TCHHL1 MUTATED 17 11 7 4
TCHHL1 WILD-TYPE 97 68 46 19
'IL5RA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S291.  Gene #30: 'IL5RA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
IL5RA MUTATED 5 1 3 8
IL5RA WILD-TYPE 77 50 44 90
'IL5RA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S292.  Gene #30: 'IL5RA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
IL5RA MUTATED 7 6 4
IL5RA WILD-TYPE 94 99 68
'IL5RA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S293.  Gene #30: 'IL5RA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
IL5RA MUTATED 3 3 1 4
IL5RA WILD-TYPE 43 55 25 34
'IL5RA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S294.  Gene #30: 'IL5RA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
IL5RA MUTATED 1 5 0 5
IL5RA WILD-TYPE 26 53 34 44
'IL5RA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S295.  Gene #30: 'IL5RA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
IL5RA MUTATED 5 7 5
IL5RA WILD-TYPE 88 75 98
'IL5RA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 1

Table S296.  Gene #30: 'IL5RA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
IL5RA MUTATED 7 9 1
IL5RA WILD-TYPE 56 158 47
'IL5RA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S297.  Gene #30: 'IL5RA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
IL5RA MUTATED 6 4 5 1 0
IL5RA WILD-TYPE 51 84 68 38 12
'IL5RA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S298.  Gene #30: 'IL5RA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
IL5RA MUTATED 7 5 1 3
IL5RA WILD-TYPE 66 66 33 88
'IL5RA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S299.  Gene #30: 'IL5RA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
IL5RA MUTATED 7 4 5
IL5RA WILD-TYPE 83 92 78
'IL5RA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S300.  Gene #30: 'IL5RA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
IL5RA MUTATED 9 5 2 0
IL5RA WILD-TYPE 105 74 51 23
'NBPF7 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S301.  Gene #31: 'NBPF7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
NBPF7 MUTATED 4 2 2 5
NBPF7 WILD-TYPE 78 49 45 93
'NBPF7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S302.  Gene #31: 'NBPF7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
NBPF7 MUTATED 5 6 2
NBPF7 WILD-TYPE 96 99 70
'NBPF7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S303.  Gene #31: 'NBPF7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
NBPF7 MUTATED 2 2 2 1
NBPF7 WILD-TYPE 44 56 24 37
'NBPF7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S304.  Gene #31: 'NBPF7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
NBPF7 MUTATED 2 1 1 3
NBPF7 WILD-TYPE 25 57 33 46
'NBPF7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0663 (Fisher's exact test), Q value = 1

Table S305.  Gene #31: 'NBPF7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
NBPF7 MUTATED 2 2 9
NBPF7 WILD-TYPE 91 80 94
'NBPF7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 1

Table S306.  Gene #31: 'NBPF7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
NBPF7 MUTATED 4 9 0
NBPF7 WILD-TYPE 59 158 48
'NBPF7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0929 (Fisher's exact test), Q value = 1

Table S307.  Gene #31: 'NBPF7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
NBPF7 MUTATED 5 7 1 0 0
NBPF7 WILD-TYPE 52 81 72 39 12
'NBPF7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S308.  Gene #31: 'NBPF7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
NBPF7 MUTATED 7 3 0 3
NBPF7 WILD-TYPE 66 68 34 88
'NBPF7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0862 (Fisher's exact test), Q value = 1

Table S309.  Gene #31: 'NBPF7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
NBPF7 MUTATED 4 8 1
NBPF7 WILD-TYPE 86 88 82
'NBPF7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0599 (Fisher's exact test), Q value = 1

Table S310.  Gene #31: 'NBPF7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
NBPF7 MUTATED 10 3 0 0
NBPF7 WILD-TYPE 104 76 53 23
'KEL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S311.  Gene #32: 'KEL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
KEL MUTATED 7 8 6 16
KEL WILD-TYPE 75 43 41 82
'KEL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 1

Table S312.  Gene #32: 'KEL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
KEL MUTATED 14 17 6
KEL WILD-TYPE 87 88 66
'KEL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S313.  Gene #32: 'KEL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
KEL MUTATED 5 8 3 7
KEL WILD-TYPE 41 50 23 31
'KEL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.654 (Fisher's exact test), Q value = 1

Table S314.  Gene #32: 'KEL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
KEL MUTATED 3 6 5 9
KEL WILD-TYPE 24 52 29 40
'KEL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0039 (Fisher's exact test), Q value = 1

Table S315.  Gene #32: 'KEL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
KEL MUTATED 4 15 18
KEL WILD-TYPE 89 67 85

Figure S24.  Get High-res Image Gene #32: 'KEL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KEL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0223 (Fisher's exact test), Q value = 1

Table S316.  Gene #32: 'KEL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
KEL MUTATED 10 26 1
KEL WILD-TYPE 53 141 47

Figure S25.  Get High-res Image Gene #32: 'KEL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KEL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 1

Table S317.  Gene #32: 'KEL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
KEL MUTATED 5 15 7 7 0
KEL WILD-TYPE 52 73 66 32 12
'KEL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S318.  Gene #32: 'KEL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
KEL MUTATED 11 7 6 10
KEL WILD-TYPE 62 64 28 81
'KEL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0899 (Fisher's exact test), Q value = 1

Table S319.  Gene #32: 'KEL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
KEL MUTATED 9 18 7
KEL WILD-TYPE 81 78 76
'KEL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S320.  Gene #32: 'KEL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
KEL MUTATED 20 8 3 3
KEL WILD-TYPE 94 71 50 20
'C7ORF58 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S321.  Gene #33: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
C7ORF58 MUTATED 9 9 6 11
C7ORF58 WILD-TYPE 73 42 41 87
'C7ORF58 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S322.  Gene #33: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
C7ORF58 MUTATED 16 11 8
C7ORF58 WILD-TYPE 85 94 64
'C7ORF58 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0886 (Fisher's exact test), Q value = 1

Table S323.  Gene #33: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
C7ORF58 MUTATED 8 8 0 7
C7ORF58 WILD-TYPE 38 50 26 31
'C7ORF58 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00254 (Fisher's exact test), Q value = 1

Table S324.  Gene #33: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
C7ORF58 MUTATED 6 13 0 4
C7ORF58 WILD-TYPE 21 45 34 45

Figure S26.  Get High-res Image Gene #33: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C7ORF58 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S325.  Gene #33: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
C7ORF58 MUTATED 11 12 12
C7ORF58 WILD-TYPE 82 70 91
'C7ORF58 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S326.  Gene #33: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
C7ORF58 MUTATED 4 24 7
C7ORF58 WILD-TYPE 59 143 41
'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 1

Table S327.  Gene #33: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
C7ORF58 MUTATED 4 10 9 7 3
C7ORF58 WILD-TYPE 53 78 64 32 9
'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 1

Table S328.  Gene #33: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
C7ORF58 MUTATED 10 8 6 9
C7ORF58 WILD-TYPE 63 63 28 82
'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S329.  Gene #33: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
C7ORF58 MUTATED 13 10 10
C7ORF58 WILD-TYPE 77 86 73
'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S330.  Gene #33: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
C7ORF58 MUTATED 14 8 6 5
C7ORF58 WILD-TYPE 100 71 47 18
'NBPF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S331.  Gene #34: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
NBPF1 MUTATED 16 6 5 12
NBPF1 WILD-TYPE 66 45 42 86
'NBPF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S332.  Gene #34: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
NBPF1 MUTATED 19 11 9
NBPF1 WILD-TYPE 82 94 63
'NBPF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0344 (Fisher's exact test), Q value = 1

Table S333.  Gene #34: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
NBPF1 MUTATED 9 6 2 12
NBPF1 WILD-TYPE 37 52 24 26

Figure S27.  Get High-res Image Gene #34: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'NBPF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.701 (Fisher's exact test), Q value = 1

Table S334.  Gene #34: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
NBPF1 MUTATED 5 12 6 6
NBPF1 WILD-TYPE 22 46 28 43
'NBPF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S335.  Gene #34: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
NBPF1 MUTATED 11 10 18
NBPF1 WILD-TYPE 82 72 85
'NBPF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 1

Table S336.  Gene #34: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
NBPF1 MUTATED 12 23 4
NBPF1 WILD-TYPE 51 144 44
'NBPF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 1

Table S337.  Gene #34: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
NBPF1 MUTATED 10 17 6 5 0
NBPF1 WILD-TYPE 47 71 67 34 12
'NBPF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S338.  Gene #34: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
NBPF1 MUTATED 9 11 4 14
NBPF1 WILD-TYPE 64 60 30 77
'NBPF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0661 (Fisher's exact test), Q value = 1

Table S339.  Gene #34: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
NBPF1 MUTATED 14 18 6
NBPF1 WILD-TYPE 76 78 77
'NBPF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 1

Table S340.  Gene #34: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
NBPF1 MUTATED 21 10 4 3
NBPF1 WILD-TYPE 93 69 49 20
'TMEM216 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S341.  Gene #35: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
TMEM216 MUTATED 1 0 3 4
TMEM216 WILD-TYPE 81 51 44 94
'TMEM216 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S342.  Gene #35: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
TMEM216 MUTATED 1 4 3
TMEM216 WILD-TYPE 100 101 69
'TMEM216 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0577 (Fisher's exact test), Q value = 1

Table S343.  Gene #35: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
TMEM216 MUTATED 4 0 2 1
TMEM216 WILD-TYPE 42 58 24 37
'TMEM216 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S344.  Gene #35: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
TMEM216 MUTATED 1 1 2 3
TMEM216 WILD-TYPE 26 57 32 46
'TMEM216 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S345.  Gene #35: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
TMEM216 MUTATED 3 3 2
TMEM216 WILD-TYPE 90 79 101
'TMEM216 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S346.  Gene #35: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
TMEM216 MUTATED 2 3 3
TMEM216 WILD-TYPE 61 164 45
'TMEM216 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S347.  Gene #35: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
TMEM216 MUTATED 2 2 3 0 1
TMEM216 WILD-TYPE 55 86 70 39 11
'TMEM216 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S348.  Gene #35: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
TMEM216 MUTATED 3 3 1 1
TMEM216 WILD-TYPE 70 68 33 90
'TMEM216 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 1

Table S349.  Gene #35: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
TMEM216 MUTATED 4 2 2
TMEM216 WILD-TYPE 86 94 81
'TMEM216 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S350.  Gene #35: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
TMEM216 MUTATED 3 4 1 0
TMEM216 WILD-TYPE 111 75 52 23
'DOM3Z MUTATION STATUS' versus 'CN_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S351.  Gene #36: 'DOM3Z MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
DOM3Z MUTATED 3 1 0 3
DOM3Z WILD-TYPE 79 50 47 95
'DOM3Z MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S352.  Gene #36: 'DOM3Z MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
DOM3Z MUTATED 5 1 1
DOM3Z WILD-TYPE 96 104 71
'DOM3Z MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S353.  Gene #36: 'DOM3Z MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
DOM3Z MUTATED 1 2 0 1
DOM3Z WILD-TYPE 45 56 26 37
'DOM3Z MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0953 (Fisher's exact test), Q value = 1

Table S354.  Gene #36: 'DOM3Z MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
DOM3Z MUTATED 1 0 0 3
DOM3Z WILD-TYPE 26 58 34 46
'DOM3Z MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 1

Table S355.  Gene #36: 'DOM3Z MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
DOM3Z MUTATED 2 1 4
DOM3Z WILD-TYPE 91 81 99
'DOM3Z MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0533 (Fisher's exact test), Q value = 1

Table S356.  Gene #36: 'DOM3Z MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
DOM3Z MUTATED 4 2 1
DOM3Z WILD-TYPE 59 165 47
'DOM3Z MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0847 (Fisher's exact test), Q value = 1

Table S357.  Gene #36: 'DOM3Z MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
DOM3Z MUTATED 1 6 0 0 0
DOM3Z WILD-TYPE 56 82 73 39 12
'DOM3Z MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 1

Table S358.  Gene #36: 'DOM3Z MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
DOM3Z MUTATED 2 0 0 5
DOM3Z WILD-TYPE 71 71 34 86
'DOM3Z MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0202 (Fisher's exact test), Q value = 1

Table S359.  Gene #36: 'DOM3Z MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
DOM3Z MUTATED 1 6 0
DOM3Z WILD-TYPE 89 90 83

Figure S28.  Get High-res Image Gene #36: 'DOM3Z MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'DOM3Z MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S360.  Gene #36: 'DOM3Z MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
DOM3Z MUTATED 5 0 2 0
DOM3Z WILD-TYPE 109 79 51 23
'BCLAF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S361.  Gene #37: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
BCLAF1 MUTATED 11 12 7 18
BCLAF1 WILD-TYPE 71 39 40 80
'BCLAF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S362.  Gene #37: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
BCLAF1 MUTATED 22 17 9
BCLAF1 WILD-TYPE 79 88 63
'BCLAF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S363.  Gene #37: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
BCLAF1 MUTATED 9 11 2 11
BCLAF1 WILD-TYPE 37 47 24 27
'BCLAF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S364.  Gene #37: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
BCLAF1 MUTATED 7 11 6 9
BCLAF1 WILD-TYPE 20 47 28 40
'BCLAF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S365.  Gene #37: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
BCLAF1 MUTATED 17 13 18
BCLAF1 WILD-TYPE 76 69 85
'BCLAF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S366.  Gene #37: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
BCLAF1 MUTATED 11 30 7
BCLAF1 WILD-TYPE 52 137 41
'BCLAF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S367.  Gene #37: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
BCLAF1 MUTATED 7 17 13 7 1
BCLAF1 WILD-TYPE 50 71 60 32 11
'BCLAF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S368.  Gene #37: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
BCLAF1 MUTATED 13 13 4 15
BCLAF1 WILD-TYPE 60 58 30 76
'BCLAF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S369.  Gene #37: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
BCLAF1 MUTATED 14 16 15
BCLAF1 WILD-TYPE 76 80 68
'BCLAF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 1

Table S370.  Gene #37: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
BCLAF1 MUTATED 24 14 4 3
BCLAF1 WILD-TYPE 90 65 49 20
'ZFX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S371.  Gene #38: 'ZFX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
ZFX MUTATED 4 2 1 7
ZFX WILD-TYPE 78 49 46 91
'ZFX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.697 (Fisher's exact test), Q value = 1

Table S372.  Gene #38: 'ZFX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
ZFX MUTATED 4 5 5
ZFX WILD-TYPE 97 100 67
'ZFX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S373.  Gene #38: 'ZFX MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ZFX MUTATED 1 4 0 2
ZFX WILD-TYPE 45 54 26 36
'ZFX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S374.  Gene #38: 'ZFX MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
ZFX MUTATED 1 3 1 2
ZFX WILD-TYPE 26 55 33 47
'ZFX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0493 (Fisher's exact test), Q value = 1

Table S375.  Gene #38: 'ZFX MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
ZFX MUTATED 1 7 6
ZFX WILD-TYPE 92 75 97

Figure S29.  Get High-res Image Gene #38: 'ZFX MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZFX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.686 (Fisher's exact test), Q value = 1

Table S376.  Gene #38: 'ZFX MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
ZFX MUTATED 3 10 1
ZFX WILD-TYPE 60 157 47
'ZFX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S377.  Gene #38: 'ZFX MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
ZFX MUTATED 3 8 2 1 0
ZFX WILD-TYPE 54 80 71 38 12
'ZFX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S378.  Gene #38: 'ZFX MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
ZFX MUTATED 5 2 1 6
ZFX WILD-TYPE 68 69 33 85
'ZFX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0488 (Fisher's exact test), Q value = 1

Table S379.  Gene #38: 'ZFX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
ZFX MUTATED 4 9 1
ZFX WILD-TYPE 86 87 82

Figure S30.  Get High-res Image Gene #38: 'ZFX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZFX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S380.  Gene #38: 'ZFX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
ZFX MUTATED 9 3 2 0
ZFX WILD-TYPE 105 76 51 23
'BRAF MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.015

Table S381.  Gene #39: 'BRAF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
BRAF MUTATED 25 28 35 52
BRAF WILD-TYPE 57 23 12 46

Figure S31.  Get High-res Image Gene #39: 'BRAF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BRAF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.019 (Fisher's exact test), Q value = 1

Table S382.  Gene #39: 'BRAF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
BRAF MUTATED 51 62 27
BRAF WILD-TYPE 50 43 45

Figure S32.  Get High-res Image Gene #39: 'BRAF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BRAF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S383.  Gene #39: 'BRAF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
BRAF MUTATED 24 24 14 21
BRAF WILD-TYPE 22 34 12 17
'BRAF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S384.  Gene #39: 'BRAF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
BRAF MUTATED 13 25 19 26
BRAF WILD-TYPE 14 33 15 23
'BRAF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00256 (Fisher's exact test), Q value = 1

Table S385.  Gene #39: 'BRAF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
BRAF MUTATED 59 41 40
BRAF WILD-TYPE 34 41 63

Figure S33.  Get High-res Image Gene #39: 'BRAF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BRAF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.015

Table S386.  Gene #39: 'BRAF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
BRAF MUTATED 14 90 36
BRAF WILD-TYPE 49 77 12

Figure S34.  Get High-res Image Gene #39: 'BRAF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BRAF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00304 (Fisher's exact test), Q value = 1

Table S387.  Gene #39: 'BRAF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
BRAF MUTATED 19 39 43 25 9
BRAF WILD-TYPE 38 49 30 14 3

Figure S35.  Get High-res Image Gene #39: 'BRAF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BRAF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S388.  Gene #39: 'BRAF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
BRAF MUTATED 31 39 22 43
BRAF WILD-TYPE 42 32 12 48
'BRAF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S389.  Gene #39: 'BRAF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
BRAF MUTATED 42 45 48
BRAF WILD-TYPE 48 51 35
'BRAF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.036 (Fisher's exact test), Q value = 1

Table S390.  Gene #39: 'BRAF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
BRAF MUTATED 46 48 28 13
BRAF WILD-TYPE 68 31 25 10

Figure S36.  Get High-res Image Gene #39: 'BRAF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SAG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 1

Table S391.  Gene #40: 'SAG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
SAG MUTATED 3 0 4 4
SAG WILD-TYPE 79 51 43 94
'SAG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 1

Table S392.  Gene #40: 'SAG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
SAG MUTATED 3 6 2
SAG WILD-TYPE 98 99 70
'SAG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S393.  Gene #40: 'SAG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
SAG MUTATED 2 1 2 2
SAG WILD-TYPE 44 57 24 36
'SAG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 1

Table S394.  Gene #40: 'SAG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
SAG MUTATED 3 1 2 1
SAG WILD-TYPE 24 57 32 48
'SAG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S395.  Gene #40: 'SAG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
SAG MUTATED 5 2 4
SAG WILD-TYPE 88 80 99
'SAG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S396.  Gene #40: 'SAG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
SAG MUTATED 3 5 3
SAG WILD-TYPE 60 162 45
'SAG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S397.  Gene #40: 'SAG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
SAG MUTATED 4 3 4 0 0
SAG WILD-TYPE 53 85 69 39 12
'SAG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S398.  Gene #40: 'SAG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
SAG MUTATED 2 6 0 3
SAG WILD-TYPE 71 65 34 88
'SAG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S399.  Gene #40: 'SAG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
SAG MUTATED 4 3 4
SAG WILD-TYPE 86 93 79
'SAG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S400.  Gene #40: 'SAG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
SAG MUTATED 4 6 1 0
SAG WILD-TYPE 110 73 52 23
'OR51S1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S401.  Gene #41: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
OR51S1 MUTATED 5 7 5 13
OR51S1 WILD-TYPE 77 44 42 85
'OR51S1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.969 (Fisher's exact test), Q value = 1

Table S402.  Gene #41: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
OR51S1 MUTATED 11 12 7
OR51S1 WILD-TYPE 90 93 65
'OR51S1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S403.  Gene #41: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
OR51S1 MUTATED 3 9 2 5
OR51S1 WILD-TYPE 43 49 24 33
'OR51S1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 1

Table S404.  Gene #41: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
OR51S1 MUTATED 1 5 5 8
OR51S1 WILD-TYPE 26 53 29 41
'OR51S1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S405.  Gene #41: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
OR51S1 MUTATED 10 10 10
OR51S1 WILD-TYPE 83 72 93
'OR51S1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S406.  Gene #41: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
OR51S1 MUTATED 7 21 2
OR51S1 WILD-TYPE 56 146 46
'OR51S1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 1

Table S407.  Gene #41: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
OR51S1 MUTATED 9 11 6 1 2
OR51S1 WILD-TYPE 48 77 67 38 10
'OR51S1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S408.  Gene #41: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
OR51S1 MUTATED 9 7 2 11
OR51S1 WILD-TYPE 64 64 32 80
'OR51S1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0828 (Fisher's exact test), Q value = 1

Table S409.  Gene #41: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
OR51S1 MUTATED 7 16 6
OR51S1 WILD-TYPE 83 80 77
'OR51S1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.028 (Fisher's exact test), Q value = 1

Table S410.  Gene #41: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
OR51S1 MUTATED 18 9 1 1
OR51S1 WILD-TYPE 96 70 52 22

Figure S37.  Get High-res Image Gene #41: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'USP17L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S411.  Gene #42: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
USP17L2 MUTATED 4 3 4 11
USP17L2 WILD-TYPE 78 48 43 87
'USP17L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 1

Table S412.  Gene #42: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
USP17L2 MUTATED 10 10 2
USP17L2 WILD-TYPE 91 95 70
'USP17L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S413.  Gene #42: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
USP17L2 MUTATED 5 5 1 3
USP17L2 WILD-TYPE 41 53 25 35
'USP17L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.57 (Fisher's exact test), Q value = 1

Table S414.  Gene #42: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
USP17L2 MUTATED 3 6 3 2
USP17L2 WILD-TYPE 24 52 31 47
'USP17L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S415.  Gene #42: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
USP17L2 MUTATED 6 10 6
USP17L2 WILD-TYPE 87 72 97
'USP17L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S416.  Gene #42: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
USP17L2 MUTATED 4 14 4
USP17L2 WILD-TYPE 59 153 44
'USP17L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.948 (Fisher's exact test), Q value = 1

Table S417.  Gene #42: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
USP17L2 MUTATED 4 7 7 2 1
USP17L2 WILD-TYPE 53 81 66 37 11
'USP17L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 1

Table S418.  Gene #42: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
USP17L2 MUTATED 3 7 2 9
USP17L2 WILD-TYPE 70 64 32 82
'USP17L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S419.  Gene #42: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
USP17L2 MUTATED 6 7 8
USP17L2 WILD-TYPE 84 89 75
'USP17L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.606 (Fisher's exact test), Q value = 1

Table S420.  Gene #42: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
USP17L2 MUTATED 9 8 2 2
USP17L2 WILD-TYPE 105 71 51 21
'LRPPRC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S421.  Gene #43: 'LRPPRC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
LRPPRC MUTATED 5 0 3 7
LRPPRC WILD-TYPE 77 51 44 91
'LRPPRC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 1

Table S422.  Gene #43: 'LRPPRC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
LRPPRC MUTATED 4 6 5
LRPPRC WILD-TYPE 97 99 67
'LRPPRC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 1

Table S423.  Gene #43: 'LRPPRC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
LRPPRC MUTATED 4 5 0 4
LRPPRC WILD-TYPE 42 53 26 34
'LRPPRC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.678 (Fisher's exact test), Q value = 1

Table S424.  Gene #43: 'LRPPRC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
LRPPRC MUTATED 2 6 1 4
LRPPRC WILD-TYPE 25 52 33 45
'LRPPRC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 1

Table S425.  Gene #43: 'LRPPRC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
LRPPRC MUTATED 7 4 4
LRPPRC WILD-TYPE 86 78 99
'LRPPRC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S426.  Gene #43: 'LRPPRC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
LRPPRC MUTATED 3 8 4
LRPPRC WILD-TYPE 60 159 44
'LRPPRC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S427.  Gene #43: 'LRPPRC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
LRPPRC MUTATED 1 4 6 3 0
LRPPRC WILD-TYPE 56 84 67 36 12
'LRPPRC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S428.  Gene #43: 'LRPPRC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
LRPPRC MUTATED 3 5 1 5
LRPPRC WILD-TYPE 70 66 33 86
'LRPPRC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S429.  Gene #43: 'LRPPRC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
LRPPRC MUTATED 4 4 6
LRPPRC WILD-TYPE 86 92 77
'LRPPRC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.951 (Fisher's exact test), Q value = 1

Table S430.  Gene #43: 'LRPPRC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
LRPPRC MUTATED 6 5 2 1
LRPPRC WILD-TYPE 108 74 51 22
'BTK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S431.  Gene #44: 'BTK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
BTK MUTATED 2 4 4 6
BTK WILD-TYPE 80 47 43 92
'BTK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 1

Table S432.  Gene #44: 'BTK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
BTK MUTATED 8 7 1
BTK WILD-TYPE 93 98 71
'BTK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 1

Table S433.  Gene #44: 'BTK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
BTK MUTATED 2 4 1 5
BTK WILD-TYPE 44 54 25 33
'BTK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.368 (Fisher's exact test), Q value = 1

Table S434.  Gene #44: 'BTK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
BTK MUTATED 0 6 3 3
BTK WILD-TYPE 27 52 31 46
'BTK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00131 (Fisher's exact test), Q value = 1

Table S435.  Gene #44: 'BTK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
BTK MUTATED 4 11 1
BTK WILD-TYPE 89 71 102

Figure S38.  Get High-res Image Gene #44: 'BTK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BTK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S436.  Gene #44: 'BTK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
BTK MUTATED 2 13 1
BTK WILD-TYPE 61 154 47
'BTK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S437.  Gene #44: 'BTK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
BTK MUTATED 5 4 3 3 0
BTK WILD-TYPE 52 84 70 36 12
'BTK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S438.  Gene #44: 'BTK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
BTK MUTATED 1 6 2 6
BTK WILD-TYPE 72 65 32 85
'BTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S439.  Gene #44: 'BTK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
BTK MUTATED 8 4 3
BTK WILD-TYPE 82 92 80
'BTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0741 (Fisher's exact test), Q value = 1

Table S440.  Gene #44: 'BTK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
BTK MUTATED 6 8 0 1
BTK WILD-TYPE 108 71 53 22
'DSG3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S441.  Gene #45: 'DSG3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
DSG3 MUTATED 16 7 10 14
DSG3 WILD-TYPE 66 44 37 84
'DSG3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.959 (Fisher's exact test), Q value = 1

Table S442.  Gene #45: 'DSG3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
DSG3 MUTATED 17 17 13
DSG3 WILD-TYPE 84 88 59
'DSG3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0706 (Fisher's exact test), Q value = 1

Table S443.  Gene #45: 'DSG3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
DSG3 MUTATED 7 6 4 12
DSG3 WILD-TYPE 39 52 22 26
'DSG3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S444.  Gene #45: 'DSG3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
DSG3 MUTATED 5 10 4 10
DSG3 WILD-TYPE 22 48 30 39
'DSG3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S445.  Gene #45: 'DSG3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
DSG3 MUTATED 17 12 18
DSG3 WILD-TYPE 76 70 85
'DSG3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S446.  Gene #45: 'DSG3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
DSG3 MUTATED 12 28 7
DSG3 WILD-TYPE 51 139 41
'DSG3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S447.  Gene #45: 'DSG3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
DSG3 MUTATED 11 19 11 3 2
DSG3 WILD-TYPE 46 69 62 36 10
'DSG3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S448.  Gene #45: 'DSG3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
DSG3 MUTATED 14 13 3 16
DSG3 WILD-TYPE 59 58 31 75
'DSG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S449.  Gene #45: 'DSG3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
DSG3 MUTATED 12 22 12
DSG3 WILD-TYPE 78 74 71
'DSG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S450.  Gene #45: 'DSG3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
DSG3 MUTATED 25 13 7 1
DSG3 WILD-TYPE 89 66 46 22
'C1QTNF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 1

Table S451.  Gene #46: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
C1QTNF9 MUTATED 5 5 1 5
C1QTNF9 WILD-TYPE 77 46 46 93
'C1QTNF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S452.  Gene #46: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
C1QTNF9 MUTATED 6 8 2
C1QTNF9 WILD-TYPE 95 97 70
'C1QTNF9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S453.  Gene #46: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
C1QTNF9 MUTATED 2 5 2 1
C1QTNF9 WILD-TYPE 44 53 24 37
'C1QTNF9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S454.  Gene #46: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
C1QTNF9 MUTATED 1 4 3 2
C1QTNF9 WILD-TYPE 26 54 31 47
'C1QTNF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S455.  Gene #46: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
C1QTNF9 MUTATED 5 5 6
C1QTNF9 WILD-TYPE 88 77 97
'C1QTNF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S456.  Gene #46: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
C1QTNF9 MUTATED 3 12 1
C1QTNF9 WILD-TYPE 60 155 47
'C1QTNF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S457.  Gene #46: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
C1QTNF9 MUTATED 4 3 6 1 1
C1QTNF9 WILD-TYPE 53 85 67 38 11
'C1QTNF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S458.  Gene #46: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
C1QTNF9 MUTATED 2 7 0 6
C1QTNF9 WILD-TYPE 71 64 34 85
'C1QTNF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S459.  Gene #46: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
C1QTNF9 MUTATED 5 3 7
C1QTNF9 WILD-TYPE 85 93 76
'C1QTNF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0971 (Fisher's exact test), Q value = 1

Table S460.  Gene #46: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
C1QTNF9 MUTATED 4 9 2 0
C1QTNF9 WILD-TYPE 110 70 51 23
'BLM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S461.  Gene #47: 'BLM MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
BLM MUTATED 6 2 1 6
BLM WILD-TYPE 76 49 46 92
'BLM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S462.  Gene #47: 'BLM MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
BLM MUTATED 7 4 4
BLM WILD-TYPE 94 101 68
'BLM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 1

Table S463.  Gene #47: 'BLM MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
BLM MUTATED 1 6 1 3
BLM WILD-TYPE 45 52 25 35
'BLM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S464.  Gene #47: 'BLM MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
BLM MUTATED 1 3 1 6
BLM WILD-TYPE 26 55 33 43
'BLM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S465.  Gene #47: 'BLM MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
BLM MUTATED 4 2 9
BLM WILD-TYPE 89 80 94
'BLM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S466.  Gene #47: 'BLM MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
BLM MUTATED 4 10 1
BLM WILD-TYPE 59 157 47
'BLM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0879 (Fisher's exact test), Q value = 1

Table S467.  Gene #47: 'BLM MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
BLM MUTATED 1 8 1 3 1
BLM WILD-TYPE 56 80 72 36 11
'BLM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S468.  Gene #47: 'BLM MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
BLM MUTATED 5 3 0 6
BLM WILD-TYPE 68 68 34 85
'BLM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 1

Table S469.  Gene #47: 'BLM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
BLM MUTATED 4 8 2
BLM WILD-TYPE 86 88 81
'BLM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0332 (Fisher's exact test), Q value = 1

Table S470.  Gene #47: 'BLM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
BLM MUTATED 11 3 0 0
BLM WILD-TYPE 103 76 53 23

Figure S39.  Get High-res Image Gene #47: 'BLM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ACSM2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S471.  Gene #48: 'ACSM2B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
ACSM2B MUTATED 13 8 6 17
ACSM2B WILD-TYPE 69 43 41 81
'ACSM2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0926 (Fisher's exact test), Q value = 1

Table S472.  Gene #48: 'ACSM2B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
ACSM2B MUTATED 17 21 6
ACSM2B WILD-TYPE 84 84 66
'ACSM2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S473.  Gene #48: 'ACSM2B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ACSM2B MUTATED 9 7 7 5
ACSM2B WILD-TYPE 37 51 19 33
'ACSM2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S474.  Gene #48: 'ACSM2B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
ACSM2B MUTATED 7 6 6 9
ACSM2B WILD-TYPE 20 52 28 40
'ACSM2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 1

Table S475.  Gene #48: 'ACSM2B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
ACSM2B MUTATED 10 12 22
ACSM2B WILD-TYPE 83 70 81
'ACSM2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S476.  Gene #48: 'ACSM2B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
ACSM2B MUTATED 12 28 4
ACSM2B WILD-TYPE 51 139 44
'ACSM2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S477.  Gene #48: 'ACSM2B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
ACSM2B MUTATED 11 18 9 4 1
ACSM2B WILD-TYPE 46 70 64 35 11
'ACSM2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S478.  Gene #48: 'ACSM2B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
ACSM2B MUTATED 15 10 4 14
ACSM2B WILD-TYPE 58 61 30 77
'ACSM2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 1

Table S479.  Gene #48: 'ACSM2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
ACSM2B MUTATED 13 19 11
ACSM2B WILD-TYPE 77 77 72
'ACSM2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S480.  Gene #48: 'ACSM2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
ACSM2B MUTATED 22 12 7 2
ACSM2B WILD-TYPE 92 67 46 21
'PARM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 1

Table S481.  Gene #49: 'PARM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
PARM1 MUTATED 6 4 1 8
PARM1 WILD-TYPE 76 47 46 90
'PARM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S482.  Gene #49: 'PARM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
PARM1 MUTATED 7 8 4
PARM1 WILD-TYPE 94 97 68
'PARM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S483.  Gene #49: 'PARM1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PARM1 MUTATED 5 3 4 2
PARM1 WILD-TYPE 41 55 22 36
'PARM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 1

Table S484.  Gene #49: 'PARM1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
PARM1 MUTATED 4 6 1 3
PARM1 WILD-TYPE 23 52 33 46
'PARM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S485.  Gene #49: 'PARM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
PARM1 MUTATED 6 7 6
PARM1 WILD-TYPE 87 75 97
'PARM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S486.  Gene #49: 'PARM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
PARM1 MUTATED 4 12 3
PARM1 WILD-TYPE 59 155 45
'PARM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S487.  Gene #49: 'PARM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
PARM1 MUTATED 2 5 8 3 0
PARM1 WILD-TYPE 55 83 65 36 12
'PARM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S488.  Gene #49: 'PARM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
PARM1 MUTATED 2 8 3 5
PARM1 WILD-TYPE 71 63 31 86
'PARM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S489.  Gene #49: 'PARM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
PARM1 MUTATED 5 5 8
PARM1 WILD-TYPE 85 91 75
'PARM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S490.  Gene #49: 'PARM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
PARM1 MUTATED 6 8 2 2
PARM1 WILD-TYPE 108 71 51 21
'TP63 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S491.  Gene #50: 'TP63 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
TP63 MUTATED 17 11 3 17
TP63 WILD-TYPE 65 40 44 81
'TP63 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S492.  Gene #50: 'TP63 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
TP63 MUTATED 24 14 10
TP63 WILD-TYPE 77 91 62
'TP63 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0428 (Fisher's exact test), Q value = 1

Table S493.  Gene #50: 'TP63 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
TP63 MUTATED 11 6 1 9
TP63 WILD-TYPE 35 52 25 29

Figure S40.  Get High-res Image Gene #50: 'TP63 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TP63 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 1

Table S494.  Gene #50: 'TP63 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
TP63 MUTATED 6 10 7 4
TP63 WILD-TYPE 21 48 27 45
'TP63 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 1

Table S495.  Gene #50: 'TP63 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
TP63 MUTATED 13 12 23
TP63 WILD-TYPE 80 70 80
'TP63 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S496.  Gene #50: 'TP63 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
TP63 MUTATED 8 35 5
TP63 WILD-TYPE 55 132 43
'TP63 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S497.  Gene #50: 'TP63 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
TP63 MUTATED 8 19 8 8 2
TP63 WILD-TYPE 49 69 65 31 10
'TP63 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S498.  Gene #50: 'TP63 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
TP63 MUTATED 11 14 4 16
TP63 WILD-TYPE 62 57 30 75
'TP63 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S499.  Gene #50: 'TP63 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
TP63 MUTATED 14 20 11
TP63 WILD-TYPE 76 76 72
'TP63 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0712 (Fisher's exact test), Q value = 1

Table S500.  Gene #50: 'TP63 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
TP63 MUTATED 24 14 3 4
TP63 WILD-TYPE 90 65 50 19
'NGF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 1

Table S501.  Gene #51: 'NGF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
NGF MUTATED 5 1 0 3
NGF WILD-TYPE 77 50 47 95
'NGF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.917 (Fisher's exact test), Q value = 1

Table S502.  Gene #51: 'NGF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
NGF MUTATED 4 3 2
NGF WILD-TYPE 97 102 70
'NGF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0756 (Fisher's exact test), Q value = 1

Table S503.  Gene #51: 'NGF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
NGF MUTATED 4 1 0 0
NGF WILD-TYPE 42 57 26 38
'NGF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S504.  Gene #51: 'NGF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
NGF MUTATED 1 2 1 1
NGF WILD-TYPE 26 56 33 48
'NGF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 1

Table S505.  Gene #51: 'NGF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
NGF MUTATED 4 3 2
NGF WILD-TYPE 89 79 101
'NGF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S506.  Gene #51: 'NGF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
NGF MUTATED 3 5 1
NGF WILD-TYPE 60 162 47
'NGF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S507.  Gene #51: 'NGF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
NGF MUTATED 1 2 4 1 0
NGF WILD-TYPE 56 86 69 38 12
'NGF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S508.  Gene #51: 'NGF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
NGF MUTATED 3 1 1 3
NGF WILD-TYPE 70 70 33 88
'NGF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S509.  Gene #51: 'NGF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
NGF MUTATED 2 3 3
NGF WILD-TYPE 88 93 80
'NGF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.374 (Fisher's exact test), Q value = 1

Table S510.  Gene #51: 'NGF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
NGF MUTATED 3 1 3 1
NGF WILD-TYPE 111 78 50 22
'ANO4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S511.  Gene #52: 'ANO4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
ANO4 MUTATED 11 7 8 19
ANO4 WILD-TYPE 71 44 39 79
'ANO4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S512.  Gene #52: 'ANO4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
ANO4 MUTATED 20 17 8
ANO4 WILD-TYPE 81 88 64
'ANO4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S513.  Gene #52: 'ANO4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ANO4 MUTATED 10 8 2 9
ANO4 WILD-TYPE 36 50 24 29
'ANO4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S514.  Gene #52: 'ANO4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
ANO4 MUTATED 4 9 8 8
ANO4 WILD-TYPE 23 49 26 41
'ANO4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S515.  Gene #52: 'ANO4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
ANO4 MUTATED 13 17 15
ANO4 WILD-TYPE 80 65 88
'ANO4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S516.  Gene #52: 'ANO4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
ANO4 MUTATED 12 24 9
ANO4 WILD-TYPE 51 143 39
'ANO4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S517.  Gene #52: 'ANO4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
ANO4 MUTATED 12 14 11 5 2
ANO4 WILD-TYPE 45 74 62 34 10
'ANO4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.968 (Fisher's exact test), Q value = 1

Table S518.  Gene #52: 'ANO4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
ANO4 MUTATED 13 12 5 14
ANO4 WILD-TYPE 60 59 29 77
'ANO4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S519.  Gene #52: 'ANO4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
ANO4 MUTATED 18 15 11
ANO4 WILD-TYPE 72 81 72
'ANO4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S520.  Gene #52: 'ANO4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
ANO4 MUTATED 22 14 5 3
ANO4 WILD-TYPE 92 65 48 20
'PCDH18 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 1

Table S521.  Gene #53: 'PCDH18 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
PCDH18 MUTATED 16 10 4 20
PCDH18 WILD-TYPE 66 41 43 78
'PCDH18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.98 (Fisher's exact test), Q value = 1

Table S522.  Gene #53: 'PCDH18 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
PCDH18 MUTATED 19 18 13
PCDH18 WILD-TYPE 82 87 59
'PCDH18 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0151 (Fisher's exact test), Q value = 1

Table S523.  Gene #53: 'PCDH18 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PCDH18 MUTATED 12 8 1 12
PCDH18 WILD-TYPE 34 50 25 26

Figure S41.  Get High-res Image Gene #53: 'PCDH18 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PCDH18 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S524.  Gene #53: 'PCDH18 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
PCDH18 MUTATED 4 14 7 8
PCDH18 WILD-TYPE 23 44 27 41
'PCDH18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S525.  Gene #53: 'PCDH18 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
PCDH18 MUTATED 15 19 16
PCDH18 WILD-TYPE 78 63 87
'PCDH18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S526.  Gene #53: 'PCDH18 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
PCDH18 MUTATED 11 30 9
PCDH18 WILD-TYPE 52 137 39
'PCDH18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S527.  Gene #53: 'PCDH18 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
PCDH18 MUTATED 10 18 16 5 0
PCDH18 WILD-TYPE 47 70 57 34 12
'PCDH18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S528.  Gene #53: 'PCDH18 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
PCDH18 MUTATED 11 18 5 15
PCDH18 WILD-TYPE 62 53 29 76
'PCDH18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S529.  Gene #53: 'PCDH18 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
PCDH18 MUTATED 16 18 15
PCDH18 WILD-TYPE 74 78 68
'PCDH18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S530.  Gene #53: 'PCDH18 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
PCDH18 MUTATED 22 19 5 3
PCDH18 WILD-TYPE 92 60 48 20
'NMS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S531.  Gene #54: 'NMS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
NMS MUTATED 3 2 2 6
NMS WILD-TYPE 79 49 45 92
'NMS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S532.  Gene #54: 'NMS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
NMS MUTATED 5 7 1
NMS WILD-TYPE 96 98 71
'NMS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S533.  Gene #54: 'NMS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
NMS MUTATED 4 1 2 3
NMS WILD-TYPE 42 57 24 35
'NMS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S534.  Gene #54: 'NMS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
NMS MUTATED 2 4 2 2
NMS WILD-TYPE 25 54 32 47
'NMS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0106 (Fisher's exact test), Q value = 1

Table S535.  Gene #54: 'NMS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
NMS MUTATED 2 9 2
NMS WILD-TYPE 91 73 101

Figure S42.  Get High-res Image Gene #54: 'NMS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NMS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S536.  Gene #54: 'NMS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
NMS MUTATED 3 10 0
NMS WILD-TYPE 60 157 48
'NMS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S537.  Gene #54: 'NMS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
NMS MUTATED 4 4 4 1 0
NMS WILD-TYPE 53 84 69 38 12
'NMS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S538.  Gene #54: 'NMS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
NMS MUTATED 3 3 1 6
NMS WILD-TYPE 70 68 33 85
'NMS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S539.  Gene #54: 'NMS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
NMS MUTATED 5 4 4
NMS WILD-TYPE 85 92 79
'NMS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S540.  Gene #54: 'NMS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
NMS MUTATED 6 4 2 1
NMS WILD-TYPE 108 75 51 22
'C12ORF43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S541.  Gene #55: 'C12ORF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
C12ORF43 MUTATED 1 1 0 3
C12ORF43 WILD-TYPE 81 50 47 95
'C12ORF43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S542.  Gene #55: 'C12ORF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
C12ORF43 MUTATED 2 3 0
C12ORF43 WILD-TYPE 99 102 72
'C12ORF43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S543.  Gene #55: 'C12ORF43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
C12ORF43 MUTATED 2 0 0 2
C12ORF43 WILD-TYPE 44 58 26 36
'C12ORF43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 1

Table S544.  Gene #55: 'C12ORF43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
C12ORF43 MUTATED 1 1 2 0
C12ORF43 WILD-TYPE 26 57 32 49
'C12ORF43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S545.  Gene #55: 'C12ORF43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
C12ORF43 MUTATED 2 2 1
C12ORF43 WILD-TYPE 91 80 102
'C12ORF43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S546.  Gene #55: 'C12ORF43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
C12ORF43 MUTATED 0 4 1
C12ORF43 WILD-TYPE 63 163 47
'C12ORF43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S547.  Gene #55: 'C12ORF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
C12ORF43 MUTATED 1 1 2 1 0
C12ORF43 WILD-TYPE 56 87 71 38 12
'C12ORF43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S548.  Gene #55: 'C12ORF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
C12ORF43 MUTATED 0 2 1 2
C12ORF43 WILD-TYPE 73 69 33 89
'C12ORF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S549.  Gene #55: 'C12ORF43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
C12ORF43 MUTATED 2 1 2
C12ORF43 WILD-TYPE 88 95 81
'C12ORF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S550.  Gene #55: 'C12ORF43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
C12ORF43 MUTATED 1 3 0 1
C12ORF43 WILD-TYPE 113 76 53 22
'XIRP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S551.  Gene #56: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
XIRP2 MUTATED 29 13 14 38
XIRP2 WILD-TYPE 53 38 33 60
'XIRP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S552.  Gene #56: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
XIRP2 MUTATED 38 36 20
XIRP2 WILD-TYPE 63 69 52
'XIRP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S553.  Gene #56: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
XIRP2 MUTATED 18 15 11 17
XIRP2 WILD-TYPE 28 43 15 21
'XIRP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.722 (Fisher's exact test), Q value = 1

Table S554.  Gene #56: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
XIRP2 MUTATED 9 19 12 21
XIRP2 WILD-TYPE 18 39 22 28
'XIRP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S555.  Gene #56: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
XIRP2 MUTATED 29 26 39
XIRP2 WILD-TYPE 64 56 64
'XIRP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 1

Table S556.  Gene #56: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
XIRP2 MUTATED 26 53 15
XIRP2 WILD-TYPE 37 114 33
'XIRP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S557.  Gene #56: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
XIRP2 MUTATED 20 29 23 16 2
XIRP2 WILD-TYPE 37 59 50 23 10
'XIRP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S558.  Gene #56: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
XIRP2 MUTATED 24 25 14 27
XIRP2 WILD-TYPE 49 46 20 64
'XIRP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S559.  Gene #56: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
XIRP2 MUTATED 31 33 26
XIRP2 WILD-TYPE 59 63 57
'XIRP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S560.  Gene #56: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
XIRP2 MUTATED 43 24 13 10
XIRP2 WILD-TYPE 71 55 40 13
'USH2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S561.  Gene #57: 'USH2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
USH2A MUTATED 28 15 14 34
USH2A WILD-TYPE 54 36 33 64
'USH2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 1

Table S562.  Gene #57: 'USH2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
USH2A MUTATED 38 33 20
USH2A WILD-TYPE 63 72 52
'USH2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0673 (Fisher's exact test), Q value = 1

Table S563.  Gene #57: 'USH2A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
USH2A MUTATED 18 14 12 18
USH2A WILD-TYPE 28 44 14 20
'USH2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S564.  Gene #57: 'USH2A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
USH2A MUTATED 11 20 11 20
USH2A WILD-TYPE 16 38 23 29
'USH2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S565.  Gene #57: 'USH2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
USH2A MUTATED 27 30 34
USH2A WILD-TYPE 66 52 69
'USH2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 1

Table S566.  Gene #57: 'USH2A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
USH2A MUTATED 23 57 11
USH2A WILD-TYPE 40 110 37
'USH2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 1

Table S567.  Gene #57: 'USH2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
USH2A MUTATED 20 30 19 16 3
USH2A WILD-TYPE 37 58 54 23 9
'USH2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S568.  Gene #57: 'USH2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
USH2A MUTATED 28 23 14 23
USH2A WILD-TYPE 45 48 20 68
'USH2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S569.  Gene #57: 'USH2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
USH2A MUTATED 33 33 22
USH2A WILD-TYPE 57 63 61
'USH2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0394 (Fisher's exact test), Q value = 1

Table S570.  Gene #57: 'USH2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
USH2A MUTATED 44 27 9 8
USH2A WILD-TYPE 70 52 44 15

Figure S43.  Get High-res Image Gene #57: 'USH2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DDX3X MUTATION STATUS' versus 'CN_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S571.  Gene #58: 'DDX3X MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
DDX3X MUTATED 5 2 2 10
DDX3X WILD-TYPE 77 49 45 88
'DDX3X MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S572.  Gene #58: 'DDX3X MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
DDX3X MUTATED 7 7 5
DDX3X WILD-TYPE 94 98 67
'DDX3X MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 1

Table S573.  Gene #58: 'DDX3X MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
DDX3X MUTATED 5 4 1 5
DDX3X WILD-TYPE 41 54 25 33
'DDX3X MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 1

Table S574.  Gene #58: 'DDX3X MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
DDX3X MUTATED 5 4 1 5
DDX3X WILD-TYPE 22 54 33 44
'DDX3X MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.697 (Fisher's exact test), Q value = 1

Table S575.  Gene #58: 'DDX3X MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
DDX3X MUTATED 5 7 7
DDX3X WILD-TYPE 88 75 96
'DDX3X MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S576.  Gene #58: 'DDX3X MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
DDX3X MUTATED 6 12 1
DDX3X WILD-TYPE 57 155 47
'DDX3X MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S577.  Gene #58: 'DDX3X MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
DDX3X MUTATED 2 7 6 4 0
DDX3X WILD-TYPE 55 81 67 35 12
'DDX3X MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S578.  Gene #58: 'DDX3X MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
DDX3X MUTATED 5 3 4 7
DDX3X WILD-TYPE 68 68 30 84
'DDX3X MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S579.  Gene #58: 'DDX3X MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
DDX3X MUTATED 5 7 7
DDX3X WILD-TYPE 85 89 76
'DDX3X MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 1

Table S580.  Gene #58: 'DDX3X MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
DDX3X MUTATED 10 3 4 2
DDX3X WILD-TYPE 104 76 49 21
'PTPN22 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S581.  Gene #59: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
PTPN22 MUTATED 4 6 4 10
PTPN22 WILD-TYPE 78 45 43 88
'PTPN22 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S582.  Gene #59: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
PTPN22 MUTATED 11 11 2
PTPN22 WILD-TYPE 90 94 70
'PTPN22 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S583.  Gene #59: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PTPN22 MUTATED 3 5 0 4
PTPN22 WILD-TYPE 43 53 26 34
'PTPN22 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0254 (Fisher's exact test), Q value = 1

Table S584.  Gene #59: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
PTPN22 MUTATED 1 9 0 2
PTPN22 WILD-TYPE 26 49 34 47

Figure S44.  Get High-res Image Gene #59: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PTPN22 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S585.  Gene #59: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
PTPN22 MUTATED 6 9 9
PTPN22 WILD-TYPE 87 73 94
'PTPN22 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S586.  Gene #59: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
PTPN22 MUTATED 4 18 2
PTPN22 WILD-TYPE 59 149 46
'PTPN22 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S587.  Gene #59: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
PTPN22 MUTATED 5 8 4 5 0
PTPN22 WILD-TYPE 52 80 69 34 12
'PTPN22 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S588.  Gene #59: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
PTPN22 MUTATED 6 6 4 6
PTPN22 WILD-TYPE 67 65 30 85
'PTPN22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 1

Table S589.  Gene #59: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
PTPN22 MUTATED 11 7 4
PTPN22 WILD-TYPE 79 89 79
'PTPN22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S590.  Gene #59: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
PTPN22 MUTATED 10 7 2 3
PTPN22 WILD-TYPE 104 72 51 20
'C3ORF71 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S591.  Gene #60: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
C3ORF71 MUTATED 0 1 1 2
C3ORF71 WILD-TYPE 82 50 46 96
'C3ORF71 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 1

Table S592.  Gene #60: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
C3ORF71 MUTATED 0 2 2
C3ORF71 WILD-TYPE 101 103 70
'C3ORF71 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S593.  Gene #60: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
C3ORF71 MUTATED 1 3 0 0
C3ORF71 WILD-TYPE 45 55 26 38
'C3ORF71 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S594.  Gene #60: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
C3ORF71 MUTATED 1 2 1 0
C3ORF71 WILD-TYPE 26 56 33 49
'C3ORF71 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S595.  Gene #60: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
C3ORF71 MUTATED 3 1 0
C3ORF71 WILD-TYPE 90 81 103
'C3ORF71 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 1

Table S596.  Gene #60: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
C3ORF71 MUTATED 0 2 2
C3ORF71 WILD-TYPE 63 165 46
'C3ORF71 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S597.  Gene #60: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
C3ORF71 MUTATED 1 1 2 0 0
C3ORF71 WILD-TYPE 56 87 71 39 12
'C3ORF71 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S598.  Gene #60: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
C3ORF71 MUTATED 1 3 0 0
C3ORF71 WILD-TYPE 72 68 34 91
'C3ORF71 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 1

Table S599.  Gene #60: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
C3ORF71 MUTATED 1 1 2
C3ORF71 WILD-TYPE 89 95 81
'C3ORF71 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S600.  Gene #60: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
C3ORF71 MUTATED 1 3 0 0
C3ORF71 WILD-TYPE 113 76 53 23
'CEACAM6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S601.  Gene #61: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
CEACAM6 MUTATED 4 3 1 7
CEACAM6 WILD-TYPE 78 48 46 91
'CEACAM6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 1

Table S602.  Gene #61: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
CEACAM6 MUTATED 8 4 3
CEACAM6 WILD-TYPE 93 101 69
'CEACAM6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S603.  Gene #61: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CEACAM6 MUTATED 3 5 1 2
CEACAM6 WILD-TYPE 43 53 25 36
'CEACAM6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S604.  Gene #61: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
CEACAM6 MUTATED 1 3 2 5
CEACAM6 WILD-TYPE 26 55 32 44
'CEACAM6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S605.  Gene #61: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
CEACAM6 MUTATED 6 4 5
CEACAM6 WILD-TYPE 87 78 98
'CEACAM6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 1

Table S606.  Gene #61: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
CEACAM6 MUTATED 3 8 4
CEACAM6 WILD-TYPE 60 159 44
'CEACAM6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S607.  Gene #61: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
CEACAM6 MUTATED 2 8 3 1 1
CEACAM6 WILD-TYPE 55 80 70 38 11
'CEACAM6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S608.  Gene #61: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
CEACAM6 MUTATED 3 4 1 7
CEACAM6 WILD-TYPE 70 67 33 84
'CEACAM6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S609.  Gene #61: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
CEACAM6 MUTATED 4 8 3
CEACAM6 WILD-TYPE 86 88 80
'CEACAM6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.297 (Fisher's exact test), Q value = 1

Table S610.  Gene #61: 'CEACAM6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
CEACAM6 MUTATED 10 3 1 1
CEACAM6 WILD-TYPE 104 76 52 22
'MUC7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S611.  Gene #62: 'MUC7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
MUC7 MUTATED 7 3 2 5
MUC7 WILD-TYPE 75 48 45 93
'MUC7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 1

Table S612.  Gene #62: 'MUC7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
MUC7 MUTATED 9 4 4
MUC7 WILD-TYPE 92 101 68
'MUC7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 1

Table S613.  Gene #62: 'MUC7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
MUC7 MUTATED 1 5 1 2
MUC7 WILD-TYPE 45 53 25 36
'MUC7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S614.  Gene #62: 'MUC7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
MUC7 MUTATED 1 2 2 4
MUC7 WILD-TYPE 26 56 32 45
'MUC7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S615.  Gene #62: 'MUC7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
MUC7 MUTATED 5 6 6
MUC7 WILD-TYPE 88 76 97
'MUC7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.067 (Fisher's exact test), Q value = 1

Table S616.  Gene #62: 'MUC7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
MUC7 MUTATED 8 7 2
MUC7 WILD-TYPE 55 160 46
'MUC7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0506 (Fisher's exact test), Q value = 1

Table S617.  Gene #62: 'MUC7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
MUC7 MUTATED 6 7 1 0 0
MUC7 WILD-TYPE 51 81 72 39 12
'MUC7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S618.  Gene #62: 'MUC7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
MUC7 MUTATED 6 3 0 5
MUC7 WILD-TYPE 67 68 34 86
'MUC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0915 (Fisher's exact test), Q value = 1

Table S619.  Gene #62: 'MUC7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
MUC7 MUTATED 5 8 1
MUC7 WILD-TYPE 85 88 82
'MUC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S620.  Gene #62: 'MUC7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
MUC7 MUTATED 9 3 2 0
MUC7 WILD-TYPE 105 76 51 23
'SELP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S621.  Gene #63: 'SELP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
SELP MUTATED 15 4 4 11
SELP WILD-TYPE 67 47 43 87
'SELP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0847 (Fisher's exact test), Q value = 1

Table S622.  Gene #63: 'SELP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
SELP MUTATED 18 8 8
SELP WILD-TYPE 83 97 64
'SELP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0387 (Fisher's exact test), Q value = 1

Table S623.  Gene #63: 'SELP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
SELP MUTATED 9 4 0 5
SELP WILD-TYPE 37 54 26 33

Figure S45.  Get High-res Image Gene #63: 'SELP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SELP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0729 (Fisher's exact test), Q value = 1

Table S624.  Gene #63: 'SELP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
SELP MUTATED 3 9 5 1
SELP WILD-TYPE 24 49 29 48
'SELP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S625.  Gene #63: 'SELP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
SELP MUTATED 12 7 15
SELP WILD-TYPE 81 75 88
'SELP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S626.  Gene #63: 'SELP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
SELP MUTATED 7 20 7
SELP WILD-TYPE 56 147 41
'SELP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S627.  Gene #63: 'SELP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
SELP MUTATED 6 12 7 5 2
SELP WILD-TYPE 51 76 66 34 10
'SELP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.408 (Fisher's exact test), Q value = 1

Table S628.  Gene #63: 'SELP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
SELP MUTATED 5 9 4 14
SELP WILD-TYPE 68 62 30 77
'SELP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S629.  Gene #63: 'SELP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
SELP MUTATED 12 10 10
SELP WILD-TYPE 78 86 73
'SELP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S630.  Gene #63: 'SELP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
SELP MUTATED 14 11 4 3
SELP WILD-TYPE 100 68 49 20
'LIPH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S631.  Gene #64: 'LIPH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
LIPH MUTATED 6 4 2 3
LIPH WILD-TYPE 76 47 45 95
'LIPH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 1

Table S632.  Gene #64: 'LIPH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
LIPH MUTATED 8 5 2
LIPH WILD-TYPE 93 100 70
'LIPH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S633.  Gene #64: 'LIPH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
LIPH MUTATED 4 2 0 4
LIPH WILD-TYPE 42 56 26 34
'LIPH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 1

Table S634.  Gene #64: 'LIPH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
LIPH MUTATED 3 2 3 2
LIPH WILD-TYPE 24 56 31 47
'LIPH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S635.  Gene #64: 'LIPH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
LIPH MUTATED 4 4 7
LIPH WILD-TYPE 89 78 96
'LIPH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S636.  Gene #64: 'LIPH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
LIPH MUTATED 5 9 1
LIPH WILD-TYPE 58 158 47
'LIPH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S637.  Gene #64: 'LIPH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
LIPH MUTATED 2 6 5 1 0
LIPH WILD-TYPE 55 82 68 38 12
'LIPH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S638.  Gene #64: 'LIPH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
LIPH MUTATED 3 4 1 6
LIPH WILD-TYPE 70 67 33 85
'LIPH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S639.  Gene #64: 'LIPH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
LIPH MUTATED 3 6 5
LIPH WILD-TYPE 87 90 78
'LIPH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.975 (Fisher's exact test), Q value = 1

Table S640.  Gene #64: 'LIPH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
LIPH MUTATED 7 4 2 1
LIPH WILD-TYPE 107 75 51 22
'MMP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0184 (Fisher's exact test), Q value = 1

Table S641.  Gene #65: 'MMP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
MMP1 MUTATED 0 2 4 8
MMP1 WILD-TYPE 82 49 43 90

Figure S46.  Get High-res Image Gene #65: 'MMP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MMP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 1

Table S642.  Gene #65: 'MMP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
MMP1 MUTATED 8 3 3
MMP1 WILD-TYPE 93 102 69
'MMP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S643.  Gene #65: 'MMP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
MMP1 MUTATED 1 2 0 2
MMP1 WILD-TYPE 45 56 26 36
'MMP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S644.  Gene #65: 'MMP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
MMP1 MUTATED 1 1 1 2
MMP1 WILD-TYPE 26 57 33 47
'MMP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S645.  Gene #65: 'MMP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
MMP1 MUTATED 5 3 6
MMP1 WILD-TYPE 88 79 97
'MMP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.502 (Fisher's exact test), Q value = 1

Table S646.  Gene #65: 'MMP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
MMP1 MUTATED 3 7 4
MMP1 WILD-TYPE 60 160 44
'MMP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S647.  Gene #65: 'MMP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
MMP1 MUTATED 4 4 5 0 1
MMP1 WILD-TYPE 53 84 68 39 11
'MMP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0569 (Fisher's exact test), Q value = 1

Table S648.  Gene #65: 'MMP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
MMP1 MUTATED 1 7 0 6
MMP1 WILD-TYPE 72 64 34 85
'MMP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S649.  Gene #65: 'MMP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
MMP1 MUTATED 4 5 5
MMP1 WILD-TYPE 86 91 78
'MMP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S650.  Gene #65: 'MMP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
MMP1 MUTATED 7 6 1 0
MMP1 WILD-TYPE 107 73 52 23
'KLF11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S651.  Gene #66: 'KLF11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
KLF11 MUTATED 2 1 0 6
KLF11 WILD-TYPE 80 50 47 92
'KLF11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0702 (Fisher's exact test), Q value = 1

Table S652.  Gene #66: 'KLF11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
KLF11 MUTATED 6 3 0
KLF11 WILD-TYPE 95 102 72
'KLF11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S653.  Gene #66: 'KLF11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
KLF11 MUTATED 2 3 0 1
KLF11 WILD-TYPE 44 55 26 37
'KLF11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0258 (Fisher's exact test), Q value = 1

Table S654.  Gene #66: 'KLF11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
KLF11 MUTATED 2 0 0 4
KLF11 WILD-TYPE 25 58 34 45

Figure S47.  Get High-res Image Gene #66: 'KLF11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KLF11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S655.  Gene #66: 'KLF11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
KLF11 MUTATED 2 2 5
KLF11 WILD-TYPE 91 80 98
'KLF11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S656.  Gene #66: 'KLF11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
KLF11 MUTATED 2 5 2
KLF11 WILD-TYPE 61 162 46
'KLF11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.934 (Fisher's exact test), Q value = 1

Table S657.  Gene #66: 'KLF11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
KLF11 MUTATED 3 3 2 1 0
KLF11 WILD-TYPE 54 85 71 38 12
'KLF11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.929 (Fisher's exact test), Q value = 1

Table S658.  Gene #66: 'KLF11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
KLF11 MUTATED 2 2 1 4
KLF11 WILD-TYPE 71 69 33 87
'KLF11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S659.  Gene #66: 'KLF11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
KLF11 MUTATED 3 4 2
KLF11 WILD-TYPE 87 92 81
'KLF11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S660.  Gene #66: 'KLF11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
KLF11 MUTATED 5 3 0 1
KLF11 WILD-TYPE 109 76 53 22
'USP9X MUTATION STATUS' versus 'CN_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S661.  Gene #67: 'USP9X MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
USP9X MUTATED 7 3 0 6
USP9X WILD-TYPE 75 48 47 92
'USP9X MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S662.  Gene #67: 'USP9X MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
USP9X MUTATED 9 3 4
USP9X WILD-TYPE 92 102 68
'USP9X MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S663.  Gene #67: 'USP9X MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
USP9X MUTATED 1 4 0 4
USP9X WILD-TYPE 45 54 26 34
'USP9X MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 1

Table S664.  Gene #67: 'USP9X MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
USP9X MUTATED 0 5 0 4
USP9X WILD-TYPE 27 53 34 45
'USP9X MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S665.  Gene #67: 'USP9X MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
USP9X MUTATED 5 5 6
USP9X WILD-TYPE 88 77 97
'USP9X MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S666.  Gene #67: 'USP9X MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
USP9X MUTATED 4 11 1
USP9X WILD-TYPE 59 156 47
'USP9X MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S667.  Gene #67: 'USP9X MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
USP9X MUTATED 4 7 4 0 1
USP9X WILD-TYPE 53 81 69 39 11
'USP9X MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S668.  Gene #67: 'USP9X MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
USP9X MUTATED 5 6 0 5
USP9X WILD-TYPE 68 65 34 86
'USP9X MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S669.  Gene #67: 'USP9X MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
USP9X MUTATED 5 8 3
USP9X WILD-TYPE 85 88 80
'USP9X MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 1

Table S670.  Gene #67: 'USP9X MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
USP9X MUTATED 9 6 1 0
USP9X WILD-TYPE 105 73 52 23
'PTK7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S671.  Gene #68: 'PTK7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
PTK7 MUTATED 7 4 1 5
PTK7 WILD-TYPE 75 47 46 93
'PTK7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S672.  Gene #68: 'PTK7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
PTK7 MUTATED 9 5 3
PTK7 WILD-TYPE 92 100 69
'PTK7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 1

Table S673.  Gene #68: 'PTK7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PTK7 MUTATED 4 1 2 2
PTK7 WILD-TYPE 42 57 24 36
'PTK7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S674.  Gene #68: 'PTK7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
PTK7 MUTATED 2 2 3 2
PTK7 WILD-TYPE 25 56 31 47
'PTK7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 1

Table S675.  Gene #68: 'PTK7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
PTK7 MUTATED 5 4 8
PTK7 WILD-TYPE 88 78 95
'PTK7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S676.  Gene #68: 'PTK7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
PTK7 MUTATED 6 9 2
PTK7 WILD-TYPE 57 158 46
'PTK7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0488 (Fisher's exact test), Q value = 1

Table S677.  Gene #68: 'PTK7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
PTK7 MUTATED 1 10 4 0 1
PTK7 WILD-TYPE 56 78 69 39 11

Figure S48.  Get High-res Image Gene #68: 'PTK7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PTK7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S678.  Gene #68: 'PTK7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
PTK7 MUTATED 4 4 0 8
PTK7 WILD-TYPE 69 67 34 83
'PTK7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S679.  Gene #68: 'PTK7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
PTK7 MUTATED 3 9 4
PTK7 WILD-TYPE 87 87 79
'PTK7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S680.  Gene #68: 'PTK7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
PTK7 MUTATED 9 4 3 0
PTK7 WILD-TYPE 105 75 50 23
'SLC14A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S681.  Gene #69: 'SLC14A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
SLC14A1 MUTATED 4 4 2 8
SLC14A1 WILD-TYPE 78 47 45 90
'SLC14A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 1

Table S682.  Gene #69: 'SLC14A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
SLC14A1 MUTATED 9 5 4
SLC14A1 WILD-TYPE 92 100 68
'SLC14A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S683.  Gene #69: 'SLC14A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
SLC14A1 MUTATED 4 3 1 3
SLC14A1 WILD-TYPE 42 55 25 35
'SLC14A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S684.  Gene #69: 'SLC14A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
SLC14A1 MUTATED 4 2 2 3
SLC14A1 WILD-TYPE 23 56 32 46
'SLC14A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S685.  Gene #69: 'SLC14A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
SLC14A1 MUTATED 6 5 7
SLC14A1 WILD-TYPE 87 77 96
'SLC14A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S686.  Gene #69: 'SLC14A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
SLC14A1 MUTATED 5 8 5
SLC14A1 WILD-TYPE 58 159 43
'SLC14A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.993 (Fisher's exact test), Q value = 1

Table S687.  Gene #69: 'SLC14A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
SLC14A1 MUTATED 3 6 5 3 0
SLC14A1 WILD-TYPE 54 82 68 36 12
'SLC14A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S688.  Gene #69: 'SLC14A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
SLC14A1 MUTATED 3 7 2 5
SLC14A1 WILD-TYPE 70 64 32 86
'SLC14A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S689.  Gene #69: 'SLC14A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
SLC14A1 MUTATED 7 5 5
SLC14A1 WILD-TYPE 83 91 78
'SLC14A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S690.  Gene #69: 'SLC14A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
SLC14A1 MUTATED 8 7 1 1
SLC14A1 WILD-TYPE 106 72 52 22
'PROX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 1

Table S691.  Gene #70: 'PROX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
PROX2 MUTATED 6 1 4 2
PROX2 WILD-TYPE 76 50 43 96
'PROX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 1

Table S692.  Gene #70: 'PROX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
PROX2 MUTATED 7 4 2
PROX2 WILD-TYPE 94 101 70
'PROX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S693.  Gene #70: 'PROX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PROX2 MUTATED 2 3 1 3
PROX2 WILD-TYPE 44 55 25 35
'PROX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S694.  Gene #70: 'PROX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
PROX2 MUTATED 2 3 1 3
PROX2 WILD-TYPE 25 55 33 46
'PROX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S695.  Gene #70: 'PROX2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
PROX2 MUTATED 5 2 6
PROX2 WILD-TYPE 88 80 97
'PROX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0459 (Fisher's exact test), Q value = 1

Table S696.  Gene #70: 'PROX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
PROX2 MUTATED 6 4 3
PROX2 WILD-TYPE 57 163 45

Figure S49.  Get High-res Image Gene #70: 'PROX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PROX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S697.  Gene #70: 'PROX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
PROX2 MUTATED 3 5 2 3 0
PROX2 WILD-TYPE 54 83 71 36 12
'PROX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S698.  Gene #70: 'PROX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
PROX2 MUTATED 5 2 3 3
PROX2 WILD-TYPE 68 69 31 88
'PROX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S699.  Gene #70: 'PROX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
PROX2 MUTATED 5 6 2
PROX2 WILD-TYPE 85 90 81
'PROX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.722 (Fisher's exact test), Q value = 1

Table S700.  Gene #70: 'PROX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
PROX2 MUTATED 6 3 2 2
PROX2 WILD-TYPE 108 76 51 21
'DNMBP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S701.  Gene #71: 'DNMBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
DNMBP MUTATED 6 1 3 9
DNMBP WILD-TYPE 76 50 44 89
'DNMBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S702.  Gene #71: 'DNMBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
DNMBP MUTATED 5 7 7
DNMBP WILD-TYPE 96 98 65
'DNMBP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.978 (Fisher's exact test), Q value = 1

Table S703.  Gene #71: 'DNMBP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
DNMBP MUTATED 3 6 2 3
DNMBP WILD-TYPE 43 52 24 35
'DNMBP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.978 (Fisher's exact test), Q value = 1

Table S704.  Gene #71: 'DNMBP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
DNMBP MUTATED 2 5 2 5
DNMBP WILD-TYPE 25 53 32 44
'DNMBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 1

Table S705.  Gene #71: 'DNMBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
DNMBP MUTATED 4 8 7
DNMBP WILD-TYPE 89 74 96
'DNMBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S706.  Gene #71: 'DNMBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
DNMBP MUTATED 5 12 2
DNMBP WILD-TYPE 58 155 46
'DNMBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S707.  Gene #71: 'DNMBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
DNMBP MUTATED 6 8 2 3 0
DNMBP WILD-TYPE 51 80 71 36 12
'DNMBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S708.  Gene #71: 'DNMBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
DNMBP MUTATED 7 5 3 4
DNMBP WILD-TYPE 66 66 31 87
'DNMBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.042 (Fisher's exact test), Q value = 1

Table S709.  Gene #71: 'DNMBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
DNMBP MUTATED 11 6 2
DNMBP WILD-TYPE 79 90 81

Figure S50.  Get High-res Image Gene #71: 'DNMBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'DNMBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S710.  Gene #71: 'DNMBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
DNMBP MUTATED 9 7 1 2
DNMBP WILD-TYPE 105 72 52 21
'MPP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S711.  Gene #72: 'MPP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
MPP7 MUTATED 9 6 3 12
MPP7 WILD-TYPE 73 45 44 86
'MPP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 1

Table S712.  Gene #72: 'MPP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
MPP7 MUTATED 15 10 5
MPP7 WILD-TYPE 86 95 67
'MPP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S713.  Gene #72: 'MPP7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
MPP7 MUTATED 5 10 1 4
MPP7 WILD-TYPE 41 48 25 34
'MPP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 1

Table S714.  Gene #72: 'MPP7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
MPP7 MUTATED 4 9 1 6
MPP7 WILD-TYPE 23 49 33 43
'MPP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 1

Table S715.  Gene #72: 'MPP7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
MPP7 MUTATED 7 8 15
MPP7 WILD-TYPE 86 74 88
'MPP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S716.  Gene #72: 'MPP7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
MPP7 MUTATED 11 16 3
MPP7 WILD-TYPE 52 151 45
'MPP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S717.  Gene #72: 'MPP7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
MPP7 MUTATED 5 12 7 4 1
MPP7 WILD-TYPE 52 76 66 35 11
'MPP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S718.  Gene #72: 'MPP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
MPP7 MUTATED 6 10 3 10
MPP7 WILD-TYPE 67 61 31 81
'MPP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.969 (Fisher's exact test), Q value = 1

Table S719.  Gene #72: 'MPP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
MPP7 MUTATED 9 11 9
MPP7 WILD-TYPE 81 85 74
'MPP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S720.  Gene #72: 'MPP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
MPP7 MUTATED 14 9 4 2
MPP7 WILD-TYPE 100 70 49 21
'IFNGR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S721.  Gene #73: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
IFNGR2 MUTATED 2 0 0 2
IFNGR2 WILD-TYPE 80 51 47 96
'IFNGR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S722.  Gene #73: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
IFNGR2 MUTATED 1 3 0
IFNGR2 WILD-TYPE 100 102 72
'IFNGR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S723.  Gene #73: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
IFNGR2 MUTATED 2 1 0 0
IFNGR2 WILD-TYPE 44 57 26 38
'IFNGR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0692 (Fisher's exact test), Q value = 1

Table S724.  Gene #73: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
IFNGR2 MUTATED 2 0 0 1
IFNGR2 WILD-TYPE 25 58 34 48
'IFNGR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S725.  Gene #73: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
IFNGR2 MUTATED 0 2 2
IFNGR2 WILD-TYPE 93 80 101
'IFNGR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S726.  Gene #73: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
IFNGR2 MUTATED 2 2 0
IFNGR2 WILD-TYPE 61 165 48
'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S727.  Gene #73: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
IFNGR2 MUTATED 0 2 2 0 0
IFNGR2 WILD-TYPE 57 86 71 39 12
'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S728.  Gene #73: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
IFNGR2 MUTATED 3 1 0 0
IFNGR2 WILD-TYPE 70 70 34 91
'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S729.  Gene #73: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
IFNGR2 MUTATED 1 1 2
IFNGR2 WILD-TYPE 89 95 81
'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S730.  Gene #73: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
IFNGR2 MUTATED 2 1 1 0
IFNGR2 WILD-TYPE 112 78 52 23
'ASNSD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0727 (Fisher's exact test), Q value = 1

Table S731.  Gene #74: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
ASNSD1 MUTATED 1 0 0 6
ASNSD1 WILD-TYPE 81 51 47 92
'ASNSD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S732.  Gene #74: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
ASNSD1 MUTATED 2 4 1
ASNSD1 WILD-TYPE 99 101 71
'ASNSD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S733.  Gene #74: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ASNSD1 MUTATED 3 1 0 1
ASNSD1 WILD-TYPE 43 57 26 37
'ASNSD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0313 (Fisher's exact test), Q value = 1

Table S734.  Gene #74: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
ASNSD1 MUTATED 3 0 1 1
ASNSD1 WILD-TYPE 24 58 33 48

Figure S51.  Get High-res Image Gene #74: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ASNSD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S735.  Gene #74: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
ASNSD1 MUTATED 1 2 4
ASNSD1 WILD-TYPE 92 80 99
'ASNSD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.652 (Fisher's exact test), Q value = 1

Table S736.  Gene #74: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
ASNSD1 MUTATED 2 5 0
ASNSD1 WILD-TYPE 61 162 48
'ASNSD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S737.  Gene #74: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
ASNSD1 MUTATED 2 1 3 1 0
ASNSD1 WILD-TYPE 55 87 70 38 12
'ASNSD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S738.  Gene #74: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
ASNSD1 MUTATED 1 2 1 3
ASNSD1 WILD-TYPE 72 69 33 88
'ASNSD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S739.  Gene #74: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
ASNSD1 MUTATED 2 2 3
ASNSD1 WILD-TYPE 88 94 80
'ASNSD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S740.  Gene #74: 'ASNSD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
ASNSD1 MUTATED 3 2 2 0
ASNSD1 WILD-TYPE 111 77 51 23
'RB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 1

Table S741.  Gene #75: 'RB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
RB1 MUTATED 6 1 1 1
RB1 WILD-TYPE 76 50 46 97
'RB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0895 (Fisher's exact test), Q value = 1

Table S742.  Gene #75: 'RB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
RB1 MUTATED 1 3 5
RB1 WILD-TYPE 100 102 67
'RB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S743.  Gene #75: 'RB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
RB1 MUTATED 2 2 1 1
RB1 WILD-TYPE 44 56 25 37
'RB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S744.  Gene #75: 'RB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
RB1 MUTATED 1 3 1 1
RB1 WILD-TYPE 26 55 33 48
'RB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S745.  Gene #75: 'RB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
RB1 MUTATED 2 2 5
RB1 WILD-TYPE 91 80 98
'RB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S746.  Gene #75: 'RB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
RB1 MUTATED 3 5 1
RB1 WILD-TYPE 60 162 47
'RB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0492 (Fisher's exact test), Q value = 1

Table S747.  Gene #75: 'RB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
RB1 MUTATED 6 2 1 0 0
RB1 WILD-TYPE 51 86 72 39 12

Figure S52.  Get High-res Image Gene #75: 'RB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0038 (Fisher's exact test), Q value = 1

Table S748.  Gene #75: 'RB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
RB1 MUTATED 7 2 0 0
RB1 WILD-TYPE 66 69 34 91

Figure S53.  Get High-res Image Gene #75: 'RB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 1

Table S749.  Gene #75: 'RB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
RB1 MUTATED 4 4 1
RB1 WILD-TYPE 86 92 82
'RB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S750.  Gene #75: 'RB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
RB1 MUTATED 5 2 2 0
RB1 WILD-TYPE 109 77 51 23
'CCK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S751.  Gene #76: 'CCK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
CCK MUTATED 4 0 1 1
CCK WILD-TYPE 78 51 46 97
'CCK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 1

Table S752.  Gene #76: 'CCK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
CCK MUTATED 1 3 2
CCK WILD-TYPE 100 102 70
'CCK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 1

Table S753.  Gene #76: 'CCK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CCK MUTATED 3 1 0 0
CCK WILD-TYPE 43 57 26 38
'CCK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0202 (Fisher's exact test), Q value = 1

Table S754.  Gene #76: 'CCK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
CCK MUTATED 3 1 0 0
CCK WILD-TYPE 24 57 34 49

Figure S54.  Get High-res Image Gene #76: 'CCK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CCK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S755.  Gene #76: 'CCK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
CCK MUTATED 2 3 1
CCK WILD-TYPE 91 79 102
'CCK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S756.  Gene #76: 'CCK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
CCK MUTATED 1 3 2
CCK WILD-TYPE 62 164 46
'CCK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 1

Table S757.  Gene #76: 'CCK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
CCK MUTATED 0 2 2 1 1
CCK WILD-TYPE 57 86 71 38 11
'CCK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.947 (Fisher's exact test), Q value = 1

Table S758.  Gene #76: 'CCK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
CCK MUTATED 2 1 1 2
CCK WILD-TYPE 71 70 33 89
'CCK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S759.  Gene #76: 'CCK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
CCK MUTATED 2 2 2
CCK WILD-TYPE 88 94 81
'CCK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S760.  Gene #76: 'CCK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
CCK MUTATED 3 1 1 1
CCK WILD-TYPE 111 78 52 22
'ZNF780B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 1

Table S761.  Gene #77: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
ZNF780B MUTATED 1 1 3 5
ZNF780B WILD-TYPE 81 50 44 93
'ZNF780B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.564 (Fisher's exact test), Q value = 1

Table S762.  Gene #77: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
ZNF780B MUTATED 4 5 1
ZNF780B WILD-TYPE 97 100 71
'ZNF780B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S763.  Gene #77: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ZNF780B MUTATED 1 5 0 1
ZNF780B WILD-TYPE 45 53 26 37
'ZNF780B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S764.  Gene #77: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
ZNF780B MUTATED 1 4 0 2
ZNF780B WILD-TYPE 26 54 34 47
'ZNF780B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S765.  Gene #77: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
ZNF780B MUTATED 2 3 5
ZNF780B WILD-TYPE 91 79 98
'ZNF780B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S766.  Gene #77: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
ZNF780B MUTATED 1 8 1
ZNF780B WILD-TYPE 62 159 47
'ZNF780B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S767.  Gene #77: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
ZNF780B MUTATED 3 1 3 2 0
ZNF780B WILD-TYPE 54 87 70 37 12
'ZNF780B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.963 (Fisher's exact test), Q value = 1

Table S768.  Gene #77: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
ZNF780B MUTATED 2 3 1 3
ZNF780B WILD-TYPE 71 68 33 88
'ZNF780B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S769.  Gene #77: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
ZNF780B MUTATED 4 1 4
ZNF780B WILD-TYPE 86 95 79
'ZNF780B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S770.  Gene #77: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
ZNF780B MUTATED 4 3 1 1
ZNF780B WILD-TYPE 110 76 52 22
'ATP5F1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S771.  Gene #78: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
ATP5F1 MUTATED 1 1 1 4
ATP5F1 WILD-TYPE 81 50 46 94
'ATP5F1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S772.  Gene #78: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
ATP5F1 MUTATED 3 3 1
ATP5F1 WILD-TYPE 98 102 71
'ATP5F1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.033 (Fisher's exact test), Q value = 1

Table S773.  Gene #78: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ATP5F1 MUTATED 1 0 1 4
ATP5F1 WILD-TYPE 45 58 25 34

Figure S55.  Get High-res Image Gene #78: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ATP5F1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S774.  Gene #78: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
ATP5F1 MUTATED 2 2 0 2
ATP5F1 WILD-TYPE 25 56 34 47
'ATP5F1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S775.  Gene #78: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
ATP5F1 MUTATED 2 3 2
ATP5F1 WILD-TYPE 91 79 101
'ATP5F1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 1

Table S776.  Gene #78: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
ATP5F1 MUTATED 1 6 0
ATP5F1 WILD-TYPE 62 161 48
'ATP5F1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S777.  Gene #78: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
ATP5F1 MUTATED 2 2 3 0 0
ATP5F1 WILD-TYPE 55 86 70 39 12
'ATP5F1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S778.  Gene #78: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
ATP5F1 MUTATED 1 2 0 4
ATP5F1 WILD-TYPE 72 69 34 87
'ATP5F1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S779.  Gene #78: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
ATP5F1 MUTATED 1 3 3
ATP5F1 WILD-TYPE 89 93 80
'ATP5F1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S780.  Gene #78: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
ATP5F1 MUTATED 4 2 1 0
ATP5F1 WILD-TYPE 110 77 52 23
'LOC728819 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S781.  Gene #79: 'LOC728819 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
LOC728819 MUTATED 1 2 2 3
LOC728819 WILD-TYPE 81 49 45 95
'LOC728819 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S782.  Gene #79: 'LOC728819 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
LOC728819 MUTATED 2 4 2
LOC728819 WILD-TYPE 99 101 70
'LOC728819 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S783.  Gene #79: 'LOC728819 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
LOC728819 MUTATED 1 0 2 2
LOC728819 WILD-TYPE 45 58 24 36
'LOC728819 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S784.  Gene #79: 'LOC728819 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
LOC728819 MUTATED 1 2 0 2
LOC728819 WILD-TYPE 26 56 34 47
'LOC728819 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S785.  Gene #79: 'LOC728819 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
LOC728819 MUTATED 3 3 2
LOC728819 WILD-TYPE 90 79 101
'LOC728819 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S786.  Gene #79: 'LOC728819 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
LOC728819 MUTATED 2 5 1
LOC728819 WILD-TYPE 61 162 47
'LOC728819 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S787.  Gene #79: 'LOC728819 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
LOC728819 MUTATED 2 3 3 0 0
LOC728819 WILD-TYPE 55 85 70 39 12
'LOC728819 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S788.  Gene #79: 'LOC728819 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
LOC728819 MUTATED 4 3 0 1
LOC728819 WILD-TYPE 69 68 34 90
'LOC728819 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S789.  Gene #79: 'LOC728819 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
LOC728819 MUTATED 2 3 3
LOC728819 WILD-TYPE 88 93 80
'LOC728819 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S790.  Gene #79: 'LOC728819 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
LOC728819 MUTATED 3 3 2 0
LOC728819 WILD-TYPE 111 76 51 23
'LACRT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 1

Table S791.  Gene #80: 'LACRT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
LACRT MUTATED 1 3 1 4
LACRT WILD-TYPE 81 48 46 94
'LACRT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S792.  Gene #80: 'LACRT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
LACRT MUTATED 5 3 1
LACRT WILD-TYPE 96 102 71
'LACRT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0679 (Fisher's exact test), Q value = 1

Table S793.  Gene #80: 'LACRT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
LACRT MUTATED 2 0 0 3
LACRT WILD-TYPE 44 58 26 35
'LACRT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0848 (Fisher's exact test), Q value = 1

Table S794.  Gene #80: 'LACRT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
LACRT MUTATED 1 1 3 0
LACRT WILD-TYPE 26 57 31 49
'LACRT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S795.  Gene #80: 'LACRT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
LACRT MUTATED 3 2 4
LACRT WILD-TYPE 90 80 99
'LACRT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S796.  Gene #80: 'LACRT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
LACRT MUTATED 2 6 1
LACRT WILD-TYPE 61 161 47
'LACRT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S797.  Gene #80: 'LACRT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
LACRT MUTATED 0 2 4 2 0
LACRT WILD-TYPE 57 86 69 37 12
'LACRT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S798.  Gene #80: 'LACRT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
LACRT MUTATED 2 3 1 2
LACRT WILD-TYPE 71 68 33 89
'LACRT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S799.  Gene #80: 'LACRT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
LACRT MUTATED 2 2 4
LACRT WILD-TYPE 88 94 79
'LACRT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S800.  Gene #80: 'LACRT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
LACRT MUTATED 3 3 1 1
LACRT WILD-TYPE 111 76 52 22
'RPGRIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S801.  Gene #81: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
RPGRIP1 MUTATED 12 4 1 8
RPGRIP1 WILD-TYPE 70 47 46 90
'RPGRIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S802.  Gene #81: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
RPGRIP1 MUTATED 9 8 8
RPGRIP1 WILD-TYPE 92 97 64
'RPGRIP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 1

Table S803.  Gene #81: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
RPGRIP1 MUTATED 6 4 3 1
RPGRIP1 WILD-TYPE 40 54 23 37
'RPGRIP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S804.  Gene #81: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
RPGRIP1 MUTATED 4 3 2 5
RPGRIP1 WILD-TYPE 23 55 32 44
'RPGRIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S805.  Gene #81: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
RPGRIP1 MUTATED 5 7 13
RPGRIP1 WILD-TYPE 88 75 90
'RPGRIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0651 (Fisher's exact test), Q value = 1

Table S806.  Gene #81: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
RPGRIP1 MUTATED 9 15 1
RPGRIP1 WILD-TYPE 54 152 47
'RPGRIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S807.  Gene #81: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
RPGRIP1 MUTATED 5 12 5 2 1
RPGRIP1 WILD-TYPE 52 76 68 37 11
'RPGRIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S808.  Gene #81: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
RPGRIP1 MUTATED 10 4 1 10
RPGRIP1 WILD-TYPE 63 67 33 81
'RPGRIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S809.  Gene #81: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
RPGRIP1 MUTATED 6 14 5
RPGRIP1 WILD-TYPE 84 82 78
'RPGRIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0455 (Fisher's exact test), Q value = 1

Table S810.  Gene #81: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
RPGRIP1 MUTATED 17 4 4 0
RPGRIP1 WILD-TYPE 97 75 49 23

Figure S56.  Get High-res Image Gene #81: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'THEMIS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S811.  Gene #82: 'THEMIS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
THEMIS MUTATED 12 3 6 13
THEMIS WILD-TYPE 70 48 41 85
'THEMIS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S812.  Gene #82: 'THEMIS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
THEMIS MUTATED 18 9 7
THEMIS WILD-TYPE 83 96 65
'THEMIS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 1

Table S813.  Gene #82: 'THEMIS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
THEMIS MUTATED 6 7 1 6
THEMIS WILD-TYPE 40 51 25 32
'THEMIS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S814.  Gene #82: 'THEMIS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
THEMIS MUTATED 4 7 2 7
THEMIS WILD-TYPE 23 51 32 42
'THEMIS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S815.  Gene #82: 'THEMIS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
THEMIS MUTATED 10 12 12
THEMIS WILD-TYPE 83 70 91
'THEMIS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 1

Table S816.  Gene #82: 'THEMIS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
THEMIS MUTATED 10 21 3
THEMIS WILD-TYPE 53 146 45
'THEMIS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 1

Table S817.  Gene #82: 'THEMIS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
THEMIS MUTATED 8 13 8 1 1
THEMIS WILD-TYPE 49 75 65 38 11
'THEMIS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 1

Table S818.  Gene #82: 'THEMIS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
THEMIS MUTATED 7 11 1 12
THEMIS WILD-TYPE 66 60 33 79
'THEMIS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 1

Table S819.  Gene #82: 'THEMIS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
THEMIS MUTATED 9 14 8
THEMIS WILD-TYPE 81 82 75
'THEMIS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S820.  Gene #82: 'THEMIS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
THEMIS MUTATED 18 9 3 1
THEMIS WILD-TYPE 96 70 50 22
'PTPRT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 1

Table S821.  Gene #83: 'PTPRT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
PTPRT MUTATED 25 16 7 33
PTPRT WILD-TYPE 57 35 40 65
'PTPRT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.097 (Fisher's exact test), Q value = 1

Table S822.  Gene #83: 'PTPRT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
PTPRT MUTATED 37 28 16
PTPRT WILD-TYPE 64 77 56
'PTPRT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 1

Table S823.  Gene #83: 'PTPRT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PTPRT MUTATED 14 21 4 13
PTPRT WILD-TYPE 32 37 22 25
'PTPRT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S824.  Gene #83: 'PTPRT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
PTPRT MUTATED 7 19 10 16
PTPRT WILD-TYPE 20 39 24 33
'PTPRT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S825.  Gene #83: 'PTPRT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
PTPRT MUTATED 26 26 29
PTPRT WILD-TYPE 67 56 74
'PTPRT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 1

Table S826.  Gene #83: 'PTPRT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
PTPRT MUTATED 18 53 10
PTPRT WILD-TYPE 45 114 38
'PTPRT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S827.  Gene #83: 'PTPRT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
PTPRT MUTATED 18 27 20 9 5
PTPRT WILD-TYPE 39 61 53 30 7
'PTPRT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S828.  Gene #83: 'PTPRT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
PTPRT MUTATED 19 20 7 33
PTPRT WILD-TYPE 54 51 27 58
'PTPRT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S829.  Gene #83: 'PTPRT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
PTPRT MUTATED 27 30 22
PTPRT WILD-TYPE 63 66 61
'PTPRT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0374 (Fisher's exact test), Q value = 1

Table S830.  Gene #83: 'PTPRT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
PTPRT MUTATED 43 22 9 5
PTPRT WILD-TYPE 71 57 44 18

Figure S57.  Get High-res Image Gene #83: 'PTPRT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SELPLG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S831.  Gene #84: 'SELPLG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
SELPLG MUTATED 4 2 1 3
SELPLG WILD-TYPE 78 49 46 95
'SELPLG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 1

Table S832.  Gene #84: 'SELPLG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
SELPLG MUTATED 5 4 1
SELPLG WILD-TYPE 96 101 71
'SELPLG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0824 (Fisher's exact test), Q value = 1

Table S833.  Gene #84: 'SELPLG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
SELPLG MUTATED 4 0 1 2
SELPLG WILD-TYPE 42 58 25 36
'SELPLG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S834.  Gene #84: 'SELPLG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
SELPLG MUTATED 1 3 1 2
SELPLG WILD-TYPE 26 55 33 47
'SELPLG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S835.  Gene #84: 'SELPLG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
SELPLG MUTATED 2 5 3
SELPLG WILD-TYPE 91 77 100
'SELPLG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S836.  Gene #84: 'SELPLG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
SELPLG MUTATED 1 8 1
SELPLG WILD-TYPE 62 159 47
'SELPLG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.956 (Fisher's exact test), Q value = 1

Table S837.  Gene #84: 'SELPLG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
SELPLG MUTATED 2 3 2 2 0
SELPLG WILD-TYPE 55 85 71 37 12
'SELPLG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S838.  Gene #84: 'SELPLG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
SELPLG MUTATED 3 2 1 3
SELPLG WILD-TYPE 70 69 33 88
'SELPLG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S839.  Gene #84: 'SELPLG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
SELPLG MUTATED 4 3 2
SELPLG WILD-TYPE 86 93 81
'SELPLG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S840.  Gene #84: 'SELPLG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
SELPLG MUTATED 5 3 1 0
SELPLG WILD-TYPE 109 76 52 23
'CSN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0951 (Fisher's exact test), Q value = 1

Table S841.  Gene #85: 'CSN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
CSN3 MUTATED 3 0 1 0
CSN3 WILD-TYPE 79 51 46 98
'CSN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S842.  Gene #85: 'CSN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
CSN3 MUTATED 3 0 1
CSN3 WILD-TYPE 98 105 71
'CSN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S843.  Gene #85: 'CSN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CSN3 MUTATED 0 2 1 0
CSN3 WILD-TYPE 46 56 25 38
'CSN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S844.  Gene #85: 'CSN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
CSN3 MUTATED 0 2 1 0
CSN3 WILD-TYPE 27 56 33 49
'CSN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S845.  Gene #85: 'CSN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
CSN3 MUTATED 2 1 1
CSN3 WILD-TYPE 91 81 102
'CSN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S846.  Gene #85: 'CSN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
CSN3 MUTATED 0 3 1
CSN3 WILD-TYPE 63 164 47
'CSN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S847.  Gene #85: 'CSN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
CSN3 MUTATED 1 1 1 1 0
CSN3 WILD-TYPE 56 87 72 38 12
'CSN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S848.  Gene #85: 'CSN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
CSN3 MUTATED 1 1 1 1
CSN3 WILD-TYPE 72 70 33 90
'CSN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S849.  Gene #85: 'CSN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
CSN3 MUTATED 2 2 0
CSN3 WILD-TYPE 88 94 83
'CSN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S850.  Gene #85: 'CSN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
CSN3 MUTATED 1 1 1 1
CSN3 WILD-TYPE 113 78 52 22
'SLC7A11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S851.  Gene #86: 'SLC7A11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
SLC7A11 MUTATED 4 1 1 6
SLC7A11 WILD-TYPE 78 50 46 92
'SLC7A11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S852.  Gene #86: 'SLC7A11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
SLC7A11 MUTATED 6 4 2
SLC7A11 WILD-TYPE 95 101 70
'SLC7A11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S853.  Gene #86: 'SLC7A11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
SLC7A11 MUTATED 3 3 0 1
SLC7A11 WILD-TYPE 43 55 26 37
'SLC7A11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S854.  Gene #86: 'SLC7A11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
SLC7A11 MUTATED 2 3 0 2
SLC7A11 WILD-TYPE 25 55 34 47
'SLC7A11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S855.  Gene #86: 'SLC7A11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
SLC7A11 MUTATED 4 3 5
SLC7A11 WILD-TYPE 89 79 98
'SLC7A11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S856.  Gene #86: 'SLC7A11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
SLC7A11 MUTATED 3 7 2
SLC7A11 WILD-TYPE 60 160 46
'SLC7A11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S857.  Gene #86: 'SLC7A11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
SLC7A11 MUTATED 1 4 5 2 0
SLC7A11 WILD-TYPE 56 84 68 37 12
'SLC7A11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S858.  Gene #86: 'SLC7A11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
SLC7A11 MUTATED 2 4 2 4
SLC7A11 WILD-TYPE 71 67 32 87
'SLC7A11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S859.  Gene #86: 'SLC7A11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
SLC7A11 MUTATED 3 4 5
SLC7A11 WILD-TYPE 87 92 78
'SLC7A11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S860.  Gene #86: 'SLC7A11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
SLC7A11 MUTATED 5 4 1 2
SLC7A11 WILD-TYPE 109 75 52 21
'SYNE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S861.  Gene #87: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
SYNE1 MUTATED 19 9 12 33
SYNE1 WILD-TYPE 63 42 35 65
'SYNE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0818 (Fisher's exact test), Q value = 1

Table S862.  Gene #87: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
SYNE1 MUTATED 31 30 12
SYNE1 WILD-TYPE 70 75 60
'SYNE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S863.  Gene #87: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
SYNE1 MUTATED 17 15 6 9
SYNE1 WILD-TYPE 29 43 20 29
'SYNE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S864.  Gene #87: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
SYNE1 MUTATED 8 17 7 15
SYNE1 WILD-TYPE 19 41 27 34
'SYNE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S865.  Gene #87: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
SYNE1 MUTATED 21 24 28
SYNE1 WILD-TYPE 72 58 75
'SYNE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S866.  Gene #87: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
SYNE1 MUTATED 17 47 9
SYNE1 WILD-TYPE 46 120 39
'SYNE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S867.  Gene #87: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
SYNE1 MUTATED 13 29 18 12 0
SYNE1 WILD-TYPE 44 59 55 27 12
'SYNE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S868.  Gene #87: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
SYNE1 MUTATED 16 20 10 26
SYNE1 WILD-TYPE 57 51 24 65
'SYNE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 1

Table S869.  Gene #87: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
SYNE1 MUTATED 27 26 19
SYNE1 WILD-TYPE 63 70 64
'SYNE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.993 (Fisher's exact test), Q value = 1

Table S870.  Gene #87: 'SYNE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
SYNE1 MUTATED 30 21 15 6
SYNE1 WILD-TYPE 84 58 38 17
'NFASC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S871.  Gene #88: 'NFASC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
NFASC MUTATED 6 4 3 10
NFASC WILD-TYPE 76 47 44 88
'NFASC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 1

Table S872.  Gene #88: 'NFASC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
NFASC MUTATED 12 7 4
NFASC WILD-TYPE 89 98 68
'NFASC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S873.  Gene #88: 'NFASC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
NFASC MUTATED 4 6 1 2
NFASC WILD-TYPE 42 52 25 36
'NFASC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S874.  Gene #88: 'NFASC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
NFASC MUTATED 2 5 2 4
NFASC WILD-TYPE 25 53 32 45
'NFASC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S875.  Gene #88: 'NFASC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
NFASC MUTATED 10 7 6
NFASC WILD-TYPE 83 75 97
'NFASC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S876.  Gene #88: 'NFASC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
NFASC MUTATED 4 14 5
NFASC WILD-TYPE 59 153 43
'NFASC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S877.  Gene #88: 'NFASC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
NFASC MUTATED 4 5 7 3 2
NFASC WILD-TYPE 53 83 66 36 10
'NFASC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S878.  Gene #88: 'NFASC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
NFASC MUTATED 3 8 3 7
NFASC WILD-TYPE 70 63 31 84
'NFASC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S879.  Gene #88: 'NFASC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
NFASC MUTATED 8 5 8
NFASC WILD-TYPE 82 91 75
'NFASC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S880.  Gene #88: 'NFASC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
NFASC MUTATED 9 8 1 3
NFASC WILD-TYPE 105 71 52 20
'CCDC11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 1

Table S881.  Gene #89: 'CCDC11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
CCDC11 MUTATED 3 2 6 6
CCDC11 WILD-TYPE 79 49 41 92
'CCDC11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.069 (Fisher's exact test), Q value = 1

Table S882.  Gene #89: 'CCDC11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
CCDC11 MUTATED 10 6 1
CCDC11 WILD-TYPE 91 99 71
'CCDC11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S883.  Gene #89: 'CCDC11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CCDC11 MUTATED 1 7 2 4
CCDC11 WILD-TYPE 45 51 24 34
'CCDC11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S884.  Gene #89: 'CCDC11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
CCDC11 MUTATED 0 4 5 5
CCDC11 WILD-TYPE 27 54 29 44
'CCDC11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S885.  Gene #89: 'CCDC11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
CCDC11 MUTATED 6 7 4
CCDC11 WILD-TYPE 87 75 99
'CCDC11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S886.  Gene #89: 'CCDC11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
CCDC11 MUTATED 2 11 4
CCDC11 WILD-TYPE 61 156 44
'CCDC11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S887.  Gene #89: 'CCDC11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
CCDC11 MUTATED 6 8 1 2 0
CCDC11 WILD-TYPE 51 80 72 37 12
'CCDC11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S888.  Gene #89: 'CCDC11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
CCDC11 MUTATED 3 5 2 7
CCDC11 WILD-TYPE 70 66 32 84
'CCDC11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0417 (Fisher's exact test), Q value = 1

Table S889.  Gene #89: 'CCDC11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
CCDC11 MUTATED 7 9 1
CCDC11 WILD-TYPE 83 87 82

Figure S58.  Get High-res Image Gene #89: 'CCDC11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CCDC11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0922 (Fisher's exact test), Q value = 1

Table S890.  Gene #89: 'CCDC11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
CCDC11 MUTATED 10 5 0 2
CCDC11 WILD-TYPE 104 74 53 21
'IL31RA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0826 (Fisher's exact test), Q value = 1

Table S891.  Gene #90: 'IL31RA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
IL31RA MUTATED 2 7 2 6
IL31RA WILD-TYPE 80 44 45 92
'IL31RA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 1

Table S892.  Gene #90: 'IL31RA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
IL31RA MUTATED 9 4 4
IL31RA WILD-TYPE 92 101 68
'IL31RA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S893.  Gene #90: 'IL31RA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
IL31RA MUTATED 2 4 0 3
IL31RA WILD-TYPE 44 54 26 35
'IL31RA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.964 (Fisher's exact test), Q value = 1

Table S894.  Gene #90: 'IL31RA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
IL31RA MUTATED 1 4 2 2
IL31RA WILD-TYPE 26 54 32 47
'IL31RA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 1

Table S895.  Gene #90: 'IL31RA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
IL31RA MUTATED 3 5 9
IL31RA WILD-TYPE 90 77 94
'IL31RA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S896.  Gene #90: 'IL31RA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
IL31RA MUTATED 4 12 1
IL31RA WILD-TYPE 59 155 47
'IL31RA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S897.  Gene #90: 'IL31RA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
IL31RA MUTATED 4 8 3 2 0
IL31RA WILD-TYPE 53 80 70 37 12
'IL31RA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S898.  Gene #90: 'IL31RA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
IL31RA MUTATED 7 1 1 8
IL31RA WILD-TYPE 66 70 33 83
'IL31RA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S899.  Gene #90: 'IL31RA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
IL31RA MUTATED 3 10 4
IL31RA WILD-TYPE 87 86 79
'IL31RA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 1

Table S900.  Gene #90: 'IL31RA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
IL31RA MUTATED 11 2 3 1
IL31RA WILD-TYPE 103 77 50 22
'MLL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S901.  Gene #91: 'MLL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
MLL MUTATED 8 9 6 15
MLL WILD-TYPE 74 42 41 83
'MLL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 1

Table S902.  Gene #91: 'MLL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
MLL MUTATED 17 12 9
MLL WILD-TYPE 84 93 63
'MLL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0727 (Fisher's exact test), Q value = 1

Table S903.  Gene #91: 'MLL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
MLL MUTATED 2 10 6 7
MLL WILD-TYPE 44 48 20 31
'MLL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S904.  Gene #91: 'MLL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
MLL MUTATED 2 12 4 7
MLL WILD-TYPE 25 46 30 42
'MLL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S905.  Gene #91: 'MLL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
MLL MUTATED 11 14 13
MLL WILD-TYPE 82 68 90
'MLL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S906.  Gene #91: 'MLL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
MLL MUTATED 5 28 5
MLL WILD-TYPE 58 139 43
'MLL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S907.  Gene #91: 'MLL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
MLL MUTATED 5 15 9 7 1
MLL WILD-TYPE 52 73 64 32 11
'MLL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 1

Table S908.  Gene #91: 'MLL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
MLL MUTATED 7 10 5 15
MLL WILD-TYPE 66 61 29 76
'MLL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S909.  Gene #91: 'MLL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
MLL MUTATED 13 15 9
MLL WILD-TYPE 77 81 74
'MLL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S910.  Gene #91: 'MLL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
MLL MUTATED 20 10 4 3
MLL WILD-TYPE 94 69 49 20
'DIRC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S911.  Gene #92: 'DIRC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
DIRC2 MUTATED 1 1 0 2
DIRC2 WILD-TYPE 81 50 47 96
'DIRC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S912.  Gene #92: 'DIRC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
DIRC2 MUTATED 2 1 1
DIRC2 WILD-TYPE 99 104 71
'DIRC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 1

Table S913.  Gene #92: 'DIRC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
DIRC2 MUTATED 1 2 1
DIRC2 WILD-TYPE 92 80 102
'DIRC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S914.  Gene #92: 'DIRC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
DIRC2 MUTATED 0 4 0
DIRC2 WILD-TYPE 63 163 48
'DIRC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 1

Table S915.  Gene #92: 'DIRC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
DIRC2 MUTATED 0 1 3 0 0
DIRC2 WILD-TYPE 57 87 70 39 12
'DIRC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S916.  Gene #92: 'DIRC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
DIRC2 MUTATED 2 1 0 1
DIRC2 WILD-TYPE 71 70 34 90
'DIRC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S917.  Gene #92: 'DIRC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
DIRC2 MUTATED 0 1 3
DIRC2 WILD-TYPE 90 95 80
'DIRC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S918.  Gene #92: 'DIRC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
DIRC2 MUTATED 2 1 1 0
DIRC2 WILD-TYPE 112 78 52 23
'ADAM22 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.564 (Fisher's exact test), Q value = 1

Table S919.  Gene #93: 'ADAM22 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
ADAM22 MUTATED 3 4 4 8
ADAM22 WILD-TYPE 79 47 43 90
'ADAM22 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 1

Table S920.  Gene #93: 'ADAM22 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
ADAM22 MUTATED 7 10 2
ADAM22 WILD-TYPE 94 95 70
'ADAM22 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 1

Table S921.  Gene #93: 'ADAM22 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ADAM22 MUTATED 6 0 3 3
ADAM22 WILD-TYPE 40 58 23 35

Figure S59.  Get High-res Image Gene #93: 'ADAM22 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ADAM22 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 1

Table S922.  Gene #93: 'ADAM22 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
ADAM22 MUTATED 4 2 3 3
ADAM22 WILD-TYPE 23 56 31 46
'ADAM22 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S923.  Gene #93: 'ADAM22 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
ADAM22 MUTATED 3 6 10
ADAM22 WILD-TYPE 90 76 93
'ADAM22 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S924.  Gene #93: 'ADAM22 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
ADAM22 MUTATED 3 15 1
ADAM22 WILD-TYPE 60 152 47
'ADAM22 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.988 (Fisher's exact test), Q value = 1

Table S925.  Gene #93: 'ADAM22 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
ADAM22 MUTATED 4 7 5 2 0
ADAM22 WILD-TYPE 53 81 68 37 12
'ADAM22 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.984 (Fisher's exact test), Q value = 1

Table S926.  Gene #93: 'ADAM22 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
ADAM22 MUTATED 5 4 2 7
ADAM22 WILD-TYPE 68 67 32 84
'ADAM22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S927.  Gene #93: 'ADAM22 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
ADAM22 MUTATED 5 7 6
ADAM22 WILD-TYPE 85 89 77
'ADAM22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.965 (Fisher's exact test), Q value = 1

Table S928.  Gene #93: 'ADAM22 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
ADAM22 MUTATED 9 5 3 1
ADAM22 WILD-TYPE 105 74 50 22
'PLCXD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S929.  Gene #94: 'PLCXD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
PLCXD2 MUTATED 2 2 2 3
PLCXD2 WILD-TYPE 80 49 45 95
'PLCXD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S930.  Gene #94: 'PLCXD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
PLCXD2 MUTATED 6 1 2
PLCXD2 WILD-TYPE 95 104 70
'PLCXD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S931.  Gene #94: 'PLCXD2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PLCXD2 MUTATED 1 3 0 1
PLCXD2 WILD-TYPE 45 55 26 37
'PLCXD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S932.  Gene #94: 'PLCXD2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
PLCXD2 MUTATED 1 0 1 3
PLCXD2 WILD-TYPE 26 58 33 46
'PLCXD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S933.  Gene #94: 'PLCXD2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
PLCXD2 MUTATED 3 1 5
PLCXD2 WILD-TYPE 90 81 98
'PLCXD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S934.  Gene #94: 'PLCXD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
PLCXD2 MUTATED 3 4 2
PLCXD2 WILD-TYPE 60 163 46
'PLCXD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 1

Table S935.  Gene #94: 'PLCXD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
PLCXD2 MUTATED 2 1 4 1 1
PLCXD2 WILD-TYPE 55 87 69 38 11
'PLCXD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 1

Table S936.  Gene #94: 'PLCXD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
PLCXD2 MUTATED 1 2 0 6
PLCXD2 WILD-TYPE 72 69 34 85
'PLCXD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 1

Table S937.  Gene #94: 'PLCXD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
PLCXD2 MUTATED 3 1 5
PLCXD2 WILD-TYPE 87 95 78
'PLCXD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S938.  Gene #94: 'PLCXD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
PLCXD2 MUTATED 4 3 2 0
PLCXD2 WILD-TYPE 110 76 51 23
'EDN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S939.  Gene #95: 'EDN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
EDN1 MUTATED 2 1 2 4
EDN1 WILD-TYPE 80 50 45 94
'EDN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S940.  Gene #95: 'EDN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
EDN1 MUTATED 3 4 2
EDN1 WILD-TYPE 98 101 70
'EDN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S941.  Gene #95: 'EDN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
EDN1 MUTATED 1 3 1 0
EDN1 WILD-TYPE 45 55 25 38
'EDN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.929 (Fisher's exact test), Q value = 1

Table S942.  Gene #95: 'EDN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
EDN1 MUTATED 0 2 1 2
EDN1 WILD-TYPE 27 56 33 47
'EDN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S943.  Gene #95: 'EDN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
EDN1 MUTATED 2 4 3
EDN1 WILD-TYPE 91 78 100
'EDN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S944.  Gene #95: 'EDN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
EDN1 MUTATED 2 6 1
EDN1 WILD-TYPE 61 161 47
'EDN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 1

Table S945.  Gene #95: 'EDN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
EDN1 MUTATED 4 2 2 1 0
EDN1 WILD-TYPE 53 86 71 38 12
'EDN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S946.  Gene #95: 'EDN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
EDN1 MUTATED 2 5 0 2
EDN1 WILD-TYPE 71 66 34 89
'EDN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S947.  Gene #95: 'EDN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
EDN1 MUTATED 5 2 2
EDN1 WILD-TYPE 85 94 81
'EDN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S948.  Gene #95: 'EDN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
EDN1 MUTATED 4 5 0 0
EDN1 WILD-TYPE 110 74 53 23
'HTR7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S949.  Gene #96: 'HTR7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
HTR7 MUTATED 4 0 1 4
HTR7 WILD-TYPE 78 51 46 94
'HTR7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S950.  Gene #96: 'HTR7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
HTR7 MUTATED 5 3 1
HTR7 WILD-TYPE 96 102 71
'HTR7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S951.  Gene #96: 'HTR7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
HTR7 MUTATED 3 1 0 1
HTR7 WILD-TYPE 43 57 26 37
'HTR7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S952.  Gene #96: 'HTR7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
HTR7 MUTATED 1 3 0 1
HTR7 WILD-TYPE 26 55 34 48
'HTR7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S953.  Gene #96: 'HTR7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
HTR7 MUTATED 6 2 1
HTR7 WILD-TYPE 87 80 102
'HTR7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S954.  Gene #96: 'HTR7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
HTR7 MUTATED 3 4 2
HTR7 WILD-TYPE 60 163 46
'HTR7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S955.  Gene #96: 'HTR7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
HTR7 MUTATED 3 2 2 0 1
HTR7 WILD-TYPE 54 86 71 39 11
'HTR7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.411 (Fisher's exact test), Q value = 1

Table S956.  Gene #96: 'HTR7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
HTR7 MUTATED 1 4 0 3
HTR7 WILD-TYPE 72 67 34 88
'HTR7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S957.  Gene #96: 'HTR7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
HTR7 MUTATED 5 1 2
HTR7 WILD-TYPE 85 95 81
'HTR7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S958.  Gene #96: 'HTR7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
HTR7 MUTATED 3 4 1 0
HTR7 WILD-TYPE 111 75 52 23
'TLR9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S959.  Gene #97: 'TLR9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
TLR9 MUTATED 5 3 1 9
TLR9 WILD-TYPE 77 48 46 89
'TLR9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S960.  Gene #97: 'TLR9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
TLR9 MUTATED 10 6 2
TLR9 WILD-TYPE 91 99 70
'TLR9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S961.  Gene #97: 'TLR9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
TLR9 MUTATED 3 4 1 2
TLR9 WILD-TYPE 43 54 25 36
'TLR9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S962.  Gene #97: 'TLR9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
TLR9 MUTATED 3 2 3 2
TLR9 WILD-TYPE 24 56 31 47
'TLR9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S963.  Gene #97: 'TLR9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
TLR9 MUTATED 5 6 7
TLR9 WILD-TYPE 88 76 96
'TLR9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S964.  Gene #97: 'TLR9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
TLR9 MUTATED 2 14 2
TLR9 WILD-TYPE 61 153 46
'TLR9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0338 (Fisher's exact test), Q value = 1

Table S965.  Gene #97: 'TLR9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
TLR9 MUTATED 2 6 4 2 4
TLR9 WILD-TYPE 55 82 69 37 8

Figure S60.  Get High-res Image Gene #97: 'TLR9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TLR9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S966.  Gene #97: 'TLR9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
TLR9 MUTATED 3 5 2 8
TLR9 WILD-TYPE 70 66 32 83
'TLR9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S967.  Gene #97: 'TLR9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
TLR9 MUTATED 6 6 6
TLR9 WILD-TYPE 84 90 77
'TLR9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S968.  Gene #97: 'TLR9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
TLR9 MUTATED 8 8 2 0
TLR9 WILD-TYPE 106 71 51 23
'MYH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 1

Table S969.  Gene #98: 'MYH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
MYH1 MUTATED 17 9 13 28
MYH1 WILD-TYPE 65 42 34 70
'MYH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00748 (Fisher's exact test), Q value = 1

Table S970.  Gene #98: 'MYH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
MYH1 MUTATED 29 30 8
MYH1 WILD-TYPE 72 75 64

Figure S61.  Get High-res Image Gene #98: 'MYH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MYH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S971.  Gene #98: 'MYH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
MYH1 MUTATED 12 16 3 10
MYH1 WILD-TYPE 34 42 23 28
'MYH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.373 (Fisher's exact test), Q value = 1

Table S972.  Gene #98: 'MYH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
MYH1 MUTATED 4 13 8 16
MYH1 WILD-TYPE 23 45 26 33
'MYH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S973.  Gene #98: 'MYH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
MYH1 MUTATED 20 26 21
MYH1 WILD-TYPE 73 56 82
'MYH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S974.  Gene #98: 'MYH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
MYH1 MUTATED 13 44 10
MYH1 WILD-TYPE 50 123 38
'MYH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S975.  Gene #98: 'MYH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
MYH1 MUTATED 16 20 16 9 2
MYH1 WILD-TYPE 41 68 57 30 10
'MYH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S976.  Gene #98: 'MYH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
MYH1 MUTATED 16 16 9 22
MYH1 WILD-TYPE 57 55 25 69
'MYH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S977.  Gene #98: 'MYH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
MYH1 MUTATED 24 23 16
MYH1 WILD-TYPE 66 73 67
'MYH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0222 (Fisher's exact test), Q value = 1

Table S978.  Gene #98: 'MYH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
MYH1 MUTATED 32 18 5 8
MYH1 WILD-TYPE 82 61 48 15

Figure S62.  Get High-res Image Gene #98: 'MYH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'EPHA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S979.  Gene #99: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
EPHA3 MUTATED 5 4 8 13
EPHA3 WILD-TYPE 77 47 39 85
'EPHA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S980.  Gene #99: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
EPHA3 MUTATED 9 14 7
EPHA3 WILD-TYPE 92 91 65
'EPHA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S981.  Gene #99: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
EPHA3 MUTATED 5 5 2 4
EPHA3 WILD-TYPE 41 53 24 34
'EPHA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S982.  Gene #99: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
EPHA3 MUTATED 3 5 2 6
EPHA3 WILD-TYPE 24 53 32 43
'EPHA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S983.  Gene #99: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
EPHA3 MUTATED 11 8 11
EPHA3 WILD-TYPE 82 74 92
'EPHA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S984.  Gene #99: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
EPHA3 MUTATED 7 18 5
EPHA3 WILD-TYPE 56 149 43
'EPHA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S985.  Gene #99: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
EPHA3 MUTATED 11 8 7 2 1
EPHA3 WILD-TYPE 46 80 66 37 11
'EPHA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0416 (Fisher's exact test), Q value = 1

Table S986.  Gene #99: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
EPHA3 MUTATED 7 14 1 7
EPHA3 WILD-TYPE 66 57 33 84

Figure S63.  Get High-res Image Gene #99: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EPHA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 1

Table S987.  Gene #99: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
EPHA3 MUTATED 12 10 7
EPHA3 WILD-TYPE 78 86 76
'EPHA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0335 (Fisher's exact test), Q value = 1

Table S988.  Gene #99: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
EPHA3 MUTATED 14 13 2 0
EPHA3 WILD-TYPE 100 66 51 23

Figure S64.  Get High-res Image Gene #99: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ARL16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 1

Table S989.  Gene #100: 'ARL16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
ARL16 MUTATED 3 3 0 1
ARL16 WILD-TYPE 79 48 47 97
'ARL16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S990.  Gene #100: 'ARL16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
ARL16 MUTATED 3 1 3
ARL16 WILD-TYPE 98 104 69
'ARL16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S991.  Gene #100: 'ARL16 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ARL16 MUTATED 2 3 0 0
ARL16 WILD-TYPE 44 55 26 38
'ARL16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S992.  Gene #100: 'ARL16 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
ARL16 MUTATED 0 4 0 1
ARL16 WILD-TYPE 27 54 34 48
'ARL16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S993.  Gene #100: 'ARL16 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
ARL16 MUTATED 3 3 1
ARL16 WILD-TYPE 90 79 102
'ARL16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S994.  Gene #100: 'ARL16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
ARL16 MUTATED 1 4 2
ARL16 WILD-TYPE 62 163 46
'ARL16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S995.  Gene #100: 'ARL16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
ARL16 MUTATED 3 0 3 1 0
ARL16 WILD-TYPE 54 88 70 38 12
'ARL16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S996.  Gene #100: 'ARL16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
ARL16 MUTATED 3 2 1 1
ARL16 WILD-TYPE 70 69 33 90
'ARL16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S997.  Gene #100: 'ARL16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
ARL16 MUTATED 4 1 2
ARL16 WILD-TYPE 86 95 81
'ARL16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S998.  Gene #100: 'ARL16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
ARL16 MUTATED 2 3 1 1
ARL16 WILD-TYPE 112 76 52 22
'DDX17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S999.  Gene #101: 'DDX17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
DDX17 MUTATED 6 0 2 3
DDX17 WILD-TYPE 76 51 45 95
'DDX17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0886 (Fisher's exact test), Q value = 1

Table S1000.  Gene #101: 'DDX17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
DDX17 MUTATED 6 5 0
DDX17 WILD-TYPE 95 100 72
'DDX17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S1001.  Gene #101: 'DDX17 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
DDX17 MUTATED 2 2 1 3
DDX17 WILD-TYPE 44 56 25 35
'DDX17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S1002.  Gene #101: 'DDX17 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
DDX17 MUTATED 1 4 1 2
DDX17 WILD-TYPE 26 54 33 47
'DDX17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1003.  Gene #101: 'DDX17 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
DDX17 MUTATED 4 3 4
DDX17 WILD-TYPE 89 79 99
'DDX17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.081 (Fisher's exact test), Q value = 1

Table S1004.  Gene #101: 'DDX17 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
DDX17 MUTATED 0 10 1
DDX17 WILD-TYPE 63 157 47
'DDX17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 1

Table S1005.  Gene #101: 'DDX17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
DDX17 MUTATED 1 2 3 4 0
DDX17 WILD-TYPE 56 86 70 35 12
'DDX17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S1006.  Gene #101: 'DDX17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
DDX17 MUTATED 2 3 2 3
DDX17 WILD-TYPE 71 68 32 88
'DDX17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S1007.  Gene #101: 'DDX17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
DDX17 MUTATED 3 3 4
DDX17 WILD-TYPE 87 93 79
'DDX17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S1008.  Gene #101: 'DDX17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
DDX17 MUTATED 4 4 1 1
DDX17 WILD-TYPE 110 75 52 22
'MAN1A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S1009.  Gene #102: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
MAN1A1 MUTATED 4 1 2 7
MAN1A1 WILD-TYPE 78 50 45 91
'MAN1A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S1010.  Gene #102: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
MAN1A1 MUTATED 5 8 1
MAN1A1 WILD-TYPE 96 97 71
'MAN1A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S1011.  Gene #102: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
MAN1A1 MUTATED 3 4 0 1
MAN1A1 WILD-TYPE 43 54 26 37
'MAN1A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S1012.  Gene #102: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
MAN1A1 MUTATED 2 4 2 0
MAN1A1 WILD-TYPE 25 54 32 49
'MAN1A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 1

Table S1013.  Gene #102: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
MAN1A1 MUTATED 2 7 5
MAN1A1 WILD-TYPE 91 75 98
'MAN1A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S1014.  Gene #102: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
MAN1A1 MUTATED 2 11 1
MAN1A1 WILD-TYPE 61 156 47
'MAN1A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S1015.  Gene #102: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
MAN1A1 MUTATED 5 4 2 1 1
MAN1A1 WILD-TYPE 52 84 71 38 11
'MAN1A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0991 (Fisher's exact test), Q value = 1

Table S1016.  Gene #102: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
MAN1A1 MUTATED 6 5 1 1
MAN1A1 WILD-TYPE 67 66 33 90
'MAN1A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S1017.  Gene #102: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
MAN1A1 MUTATED 6 5 2
MAN1A1 WILD-TYPE 84 91 81
'MAN1A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 1

Table S1018.  Gene #102: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
MAN1A1 MUTATED 7 5 0 1
MAN1A1 WILD-TYPE 107 74 53 22
'ADAM30 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S1019.  Gene #103: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
ADAM30 MUTATED 9 5 1 13
ADAM30 WILD-TYPE 73 46 46 85
'ADAM30 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S1020.  Gene #103: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
ADAM30 MUTATED 9 12 7
ADAM30 WILD-TYPE 92 93 65
'ADAM30 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S1021.  Gene #103: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ADAM30 MUTATED 7 6 4 2
ADAM30 WILD-TYPE 39 52 22 36
'ADAM30 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0392 (Fisher's exact test), Q value = 1

Table S1022.  Gene #103: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
ADAM30 MUTATED 3 7 0 9
ADAM30 WILD-TYPE 24 51 34 40

Figure S65.  Get High-res Image Gene #103: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ADAM30 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 1

Table S1023.  Gene #103: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
ADAM30 MUTATED 6 10 12
ADAM30 WILD-TYPE 87 72 91
'ADAM30 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S1024.  Gene #103: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
ADAM30 MUTATED 8 17 3
ADAM30 WILD-TYPE 55 150 45
'ADAM30 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0846 (Fisher's exact test), Q value = 1

Table S1025.  Gene #103: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
ADAM30 MUTATED 10 11 3 3 0
ADAM30 WILD-TYPE 47 77 70 36 12
'ADAM30 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 1

Table S1026.  Gene #103: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
ADAM30 MUTATED 10 5 2 10
ADAM30 WILD-TYPE 63 66 32 81
'ADAM30 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S1027.  Gene #103: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
ADAM30 MUTATED 10 13 4
ADAM30 WILD-TYPE 80 83 79
'ADAM30 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S1028.  Gene #103: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
ADAM30 MUTATED 17 5 3 2
ADAM30 WILD-TYPE 97 74 50 21
'NBEAL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0463 (Fisher's exact test), Q value = 1

Table S1029.  Gene #104: 'NBEAL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
NBEAL1 MUTATED 8 1 5 16
NBEAL1 WILD-TYPE 74 50 42 82

Figure S66.  Get High-res Image Gene #104: 'NBEAL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NBEAL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0193 (Fisher's exact test), Q value = 1

Table S1030.  Gene #104: 'NBEAL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
NBEAL1 MUTATED 9 18 3
NBEAL1 WILD-TYPE 92 87 69

Figure S67.  Get High-res Image Gene #104: 'NBEAL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NBEAL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S1031.  Gene #104: 'NBEAL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
NBEAL1 MUTATED 6 9 5 3
NBEAL1 WILD-TYPE 40 49 21 35
'NBEAL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0738 (Fisher's exact test), Q value = 1

Table S1032.  Gene #104: 'NBEAL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
NBEAL1 MUTATED 4 7 1 11
NBEAL1 WILD-TYPE 23 51 33 38
'NBEAL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S1033.  Gene #104: 'NBEAL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
NBEAL1 MUTATED 11 9 10
NBEAL1 WILD-TYPE 82 73 93
'NBEAL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 1

Table S1034.  Gene #104: 'NBEAL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
NBEAL1 MUTATED 4 20 6
NBEAL1 WILD-TYPE 59 147 42
'NBEAL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 1

Table S1035.  Gene #104: 'NBEAL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
NBEAL1 MUTATED 6 12 6 5 0
NBEAL1 WILD-TYPE 51 76 67 34 12
'NBEAL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S1036.  Gene #104: 'NBEAL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
NBEAL1 MUTATED 6 9 2 12
NBEAL1 WILD-TYPE 67 62 32 79
'NBEAL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.585 (Fisher's exact test), Q value = 1

Table S1037.  Gene #104: 'NBEAL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
NBEAL1 MUTATED 8 13 8
NBEAL1 WILD-TYPE 82 83 75
'NBEAL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S1038.  Gene #104: 'NBEAL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
NBEAL1 MUTATED 14 9 4 2
NBEAL1 WILD-TYPE 100 70 49 21
'WDR65 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S1039.  Gene #105: 'WDR65 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
WDR65 MUTATED 6 3 5 7
WDR65 WILD-TYPE 76 48 42 91
'WDR65 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S1040.  Gene #105: 'WDR65 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
WDR65 MUTATED 9 7 5
WDR65 WILD-TYPE 92 98 67
'WDR65 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S1041.  Gene #105: 'WDR65 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
WDR65 MUTATED 3 5 0 5
WDR65 WILD-TYPE 43 53 26 33
'WDR65 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S1042.  Gene #105: 'WDR65 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
WDR65 MUTATED 1 5 3 4
WDR65 WILD-TYPE 26 53 31 45
'WDR65 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S1043.  Gene #105: 'WDR65 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
WDR65 MUTATED 9 6 6
WDR65 WILD-TYPE 84 76 97
'WDR65 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S1044.  Gene #105: 'WDR65 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
WDR65 MUTATED 5 11 5
WDR65 WILD-TYPE 58 156 43
'WDR65 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S1045.  Gene #105: 'WDR65 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
WDR65 MUTATED 7 6 2 4 1
WDR65 WILD-TYPE 50 82 71 35 11
'WDR65 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 1

Table S1046.  Gene #105: 'WDR65 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
WDR65 MUTATED 8 5 4 3
WDR65 WILD-TYPE 65 66 30 88
'WDR65 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0726 (Fisher's exact test), Q value = 1

Table S1047.  Gene #105: 'WDR65 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
WDR65 MUTATED 10 8 2
WDR65 WILD-TYPE 80 88 81
'WDR65 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S1048.  Gene #105: 'WDR65 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
WDR65 MUTATED 9 7 2 2
WDR65 WILD-TYPE 105 72 51 21
'C6ORF165 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 1

Table S1049.  Gene #106: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
C6ORF165 MUTATED 4 2 3 10
C6ORF165 WILD-TYPE 78 49 44 88
'C6ORF165 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S1050.  Gene #106: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
C6ORF165 MUTATED 9 7 3
C6ORF165 WILD-TYPE 92 98 69
'C6ORF165 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 1

Table S1051.  Gene #106: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
C6ORF165 MUTATED 1 3 3 4
C6ORF165 WILD-TYPE 45 55 23 34
'C6ORF165 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S1052.  Gene #106: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
C6ORF165 MUTATED 0 3 2 6
C6ORF165 WILD-TYPE 27 55 32 43
'C6ORF165 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S1053.  Gene #106: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
C6ORF165 MUTATED 4 6 9
C6ORF165 WILD-TYPE 89 76 94
'C6ORF165 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S1054.  Gene #106: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
C6ORF165 MUTATED 5 12 2
C6ORF165 WILD-TYPE 58 155 46
'C6ORF165 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S1055.  Gene #106: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
C6ORF165 MUTATED 5 6 6 1 0
C6ORF165 WILD-TYPE 52 82 67 38 12
'C6ORF165 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 1

Table S1056.  Gene #106: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
C6ORF165 MUTATED 3 7 0 8
C6ORF165 WILD-TYPE 70 64 34 83
'C6ORF165 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 1

Table S1057.  Gene #106: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
C6ORF165 MUTATED 4 8 6
C6ORF165 WILD-TYPE 86 88 77
'C6ORF165 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S1058.  Gene #106: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
C6ORF165 MUTATED 9 6 3 0
C6ORF165 WILD-TYPE 105 73 50 23
'RNF133 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S1059.  Gene #107: 'RNF133 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
RNF133 MUTATED 2 1 2 3
RNF133 WILD-TYPE 80 50 45 95
'RNF133 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 1

Table S1060.  Gene #107: 'RNF133 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
RNF133 MUTATED 2 5 1
RNF133 WILD-TYPE 99 100 71
'RNF133 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S1061.  Gene #107: 'RNF133 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
RNF133 MUTATED 2 1 0 3
RNF133 WILD-TYPE 44 57 26 35
'RNF133 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S1062.  Gene #107: 'RNF133 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
RNF133 MUTATED 2 2 0 2
RNF133 WILD-TYPE 25 56 34 47
'RNF133 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S1063.  Gene #107: 'RNF133 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
RNF133 MUTATED 2 2 4
RNF133 WILD-TYPE 91 80 99
'RNF133 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S1064.  Gene #107: 'RNF133 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
RNF133 MUTATED 1 6 1
RNF133 WILD-TYPE 62 161 47
'RNF133 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S1065.  Gene #107: 'RNF133 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
RNF133 MUTATED 0 2 3 3 0
RNF133 WILD-TYPE 57 86 70 36 12
'RNF133 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S1066.  Gene #107: 'RNF133 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
RNF133 MUTATED 1 2 2 3
RNF133 WILD-TYPE 72 69 32 88
'RNF133 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S1067.  Gene #107: 'RNF133 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
RNF133 MUTATED 2 2 4
RNF133 WILD-TYPE 88 94 79
'RNF133 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S1068.  Gene #107: 'RNF133 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
RNF133 MUTATED 3 3 2 0
RNF133 WILD-TYPE 111 76 51 23
'GTPBP4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S1069.  Gene #108: 'GTPBP4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
GTPBP4 MUTATED 0 3 2 3
GTPBP4 WILD-TYPE 82 48 45 95
'GTPBP4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 1

Table S1070.  Gene #108: 'GTPBP4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
GTPBP4 MUTATED 4 3 1
GTPBP4 WILD-TYPE 97 102 71
'GTPBP4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 1

Table S1071.  Gene #108: 'GTPBP4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
GTPBP4 MUTATED 0 2 0 1
GTPBP4 WILD-TYPE 46 56 26 37
'GTPBP4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S1072.  Gene #108: 'GTPBP4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
GTPBP4 MUTATED 0 3 0 0
GTPBP4 WILD-TYPE 27 55 34 49
'GTPBP4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S1073.  Gene #108: 'GTPBP4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
GTPBP4 MUTATED 3 4 1
GTPBP4 WILD-TYPE 90 78 102
'GTPBP4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S1074.  Gene #108: 'GTPBP4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
GTPBP4 MUTATED 0 5 3
GTPBP4 WILD-TYPE 63 162 45
'GTPBP4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S1075.  Gene #108: 'GTPBP4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
GTPBP4 MUTATED 1 2 4 1 0
GTPBP4 WILD-TYPE 56 86 69 38 12
'GTPBP4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S1076.  Gene #108: 'GTPBP4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
GTPBP4 MUTATED 1 4 1 2
GTPBP4 WILD-TYPE 72 67 33 89
'GTPBP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S1077.  Gene #108: 'GTPBP4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
GTPBP4 MUTATED 2 2 4
GTPBP4 WILD-TYPE 88 94 79
'GTPBP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 1

Table S1078.  Gene #108: 'GTPBP4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
GTPBP4 MUTATED 2 5 0 1
GTPBP4 WILD-TYPE 112 74 53 22
'ACSBG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S1079.  Gene #109: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
ACSBG1 MUTATED 1 1 4 6
ACSBG1 WILD-TYPE 81 50 43 92
'ACSBG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S1080.  Gene #109: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
ACSBG1 MUTATED 5 6 1
ACSBG1 WILD-TYPE 96 99 71
'ACSBG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S1081.  Gene #109: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ACSBG1 MUTATED 1 3 0 2
ACSBG1 WILD-TYPE 45 55 26 36
'ACSBG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S1082.  Gene #109: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
ACSBG1 MUTATED 1 4 1 0
ACSBG1 WILD-TYPE 26 54 33 49
'ACSBG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 1

Table S1083.  Gene #109: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
ACSBG1 MUTATED 3 6 3
ACSBG1 WILD-TYPE 90 76 100
'ACSBG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S1084.  Gene #109: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
ACSBG1 MUTATED 1 8 3
ACSBG1 WILD-TYPE 62 159 45
'ACSBG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S1085.  Gene #109: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
ACSBG1 MUTATED 3 5 2 2 0
ACSBG1 WILD-TYPE 54 83 71 37 12
'ACSBG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S1086.  Gene #109: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
ACSBG1 MUTATED 2 5 2 3
ACSBG1 WILD-TYPE 71 66 32 88
'ACSBG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1087.  Gene #109: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
ACSBG1 MUTATED 4 4 4
ACSBG1 WILD-TYPE 86 92 79
'ACSBG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0935 (Fisher's exact test), Q value = 1

Table S1088.  Gene #109: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
ACSBG1 MUTATED 4 6 0 2
ACSBG1 WILD-TYPE 110 73 53 21
'TPTE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S1089.  Gene #110: 'TPTE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
TPTE MUTATED 18 15 10 17
TPTE WILD-TYPE 64 36 37 81
'TPTE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0638 (Fisher's exact test), Q value = 1

Table S1090.  Gene #110: 'TPTE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
TPTE MUTATED 27 15 18
TPTE WILD-TYPE 74 90 54
'TPTE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.071 (Fisher's exact test), Q value = 1

Table S1091.  Gene #110: 'TPTE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
TPTE MUTATED 8 14 2 13
TPTE WILD-TYPE 38 44 24 25
'TPTE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.917 (Fisher's exact test), Q value = 1

Table S1092.  Gene #110: 'TPTE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
TPTE MUTATED 6 13 6 12
TPTE WILD-TYPE 21 45 28 37
'TPTE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0416 (Fisher's exact test), Q value = 1

Table S1093.  Gene #110: 'TPTE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
TPTE MUTATED 25 21 14
TPTE WILD-TYPE 68 61 89

Figure S68.  Get High-res Image Gene #110: 'TPTE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TPTE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.978 (Fisher's exact test), Q value = 1

Table S1094.  Gene #110: 'TPTE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
TPTE MUTATED 13 37 10
TPTE WILD-TYPE 50 130 38
'TPTE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S1095.  Gene #110: 'TPTE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
TPTE MUTATED 13 19 11 10 3
TPTE WILD-TYPE 44 69 62 29 9
'TPTE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S1096.  Gene #110: 'TPTE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
TPTE MUTATED 11 17 7 21
TPTE WILD-TYPE 62 54 27 70
'TPTE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S1097.  Gene #110: 'TPTE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
TPTE MUTATED 18 23 15
TPTE WILD-TYPE 72 73 68
'TPTE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00168 (Fisher's exact test), Q value = 1

Table S1098.  Gene #110: 'TPTE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
TPTE MUTATED 31 17 2 6
TPTE WILD-TYPE 83 62 51 17

Figure S69.  Get High-res Image Gene #110: 'TPTE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CLCC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S1099.  Gene #111: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
CLCC1 MUTATED 6 2 2 3
CLCC1 WILD-TYPE 76 49 45 95
'CLCC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S1100.  Gene #111: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
CLCC1 MUTATED 6 4 3
CLCC1 WILD-TYPE 95 101 69
'CLCC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S1101.  Gene #111: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CLCC1 MUTATED 3 4 1 1
CLCC1 WILD-TYPE 43 54 25 37
'CLCC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S1102.  Gene #111: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
CLCC1 MUTATED 3 3 1 2
CLCC1 WILD-TYPE 24 55 33 47
'CLCC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S1103.  Gene #111: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
CLCC1 MUTATED 4 3 6
CLCC1 WILD-TYPE 89 79 97
'CLCC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S1104.  Gene #111: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
CLCC1 MUTATED 5 7 1
CLCC1 WILD-TYPE 58 160 47
'CLCC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S1105.  Gene #111: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
CLCC1 MUTATED 2 7 2 2 0
CLCC1 WILD-TYPE 55 81 71 37 12
'CLCC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 1

Table S1106.  Gene #111: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
CLCC1 MUTATED 6 3 1 3
CLCC1 WILD-TYPE 67 68 33 88
'CLCC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 1

Table S1107.  Gene #111: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
CLCC1 MUTATED 5 6 2
CLCC1 WILD-TYPE 85 90 81
'CLCC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S1108.  Gene #111: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
CLCC1 MUTATED 8 3 1 1
CLCC1 WILD-TYPE 106 76 52 22
'PPAP2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S1109.  Gene #112: 'PPAP2B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
PPAP2B MUTATED 2 2 1 5
PPAP2B WILD-TYPE 80 49 46 93
'PPAP2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S1110.  Gene #112: 'PPAP2B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
PPAP2B MUTATED 5 3 2
PPAP2B WILD-TYPE 96 102 70
'PPAP2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S1111.  Gene #112: 'PPAP2B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PPAP2B MUTATED 3 1 0 0
PPAP2B WILD-TYPE 43 57 26 38
'PPAP2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S1112.  Gene #112: 'PPAP2B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
PPAP2B MUTATED 1 2 0 1
PPAP2B WILD-TYPE 26 56 34 48
'PPAP2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S1113.  Gene #112: 'PPAP2B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
PPAP2B MUTATED 2 5 3
PPAP2B WILD-TYPE 91 77 100
'PPAP2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S1114.  Gene #112: 'PPAP2B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
PPAP2B MUTATED 1 9 0
PPAP2B WILD-TYPE 62 158 48
'PPAP2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S1115.  Gene #112: 'PPAP2B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
PPAP2B MUTATED 3 2 2 1 0
PPAP2B WILD-TYPE 54 86 71 38 12
'PPAP2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S1116.  Gene #112: 'PPAP2B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
PPAP2B MUTATED 3 2 1 2
PPAP2B WILD-TYPE 70 69 33 89
'PPAP2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 1

Table S1117.  Gene #112: 'PPAP2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
PPAP2B MUTATED 3 1 4
PPAP2B WILD-TYPE 87 95 79
'PPAP2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S1118.  Gene #112: 'PPAP2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
PPAP2B MUTATED 3 3 1 1
PPAP2B WILD-TYPE 111 76 52 22
'CD300E MUTATION STATUS' versus 'CN_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S1119.  Gene #113: 'CD300E MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
CD300E MUTATED 3 0 4 3
CD300E WILD-TYPE 79 51 43 95
'CD300E MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 1

Table S1120.  Gene #113: 'CD300E MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
CD300E MUTATED 2 5 3
CD300E WILD-TYPE 99 100 69
'CD300E MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S1121.  Gene #113: 'CD300E MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CD300E MUTATED 1 4 0 2
CD300E WILD-TYPE 45 54 26 36
'CD300E MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S1122.  Gene #113: 'CD300E MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
CD300E MUTATED 0 3 2 2
CD300E WILD-TYPE 27 55 32 47
'CD300E MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S1123.  Gene #113: 'CD300E MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
CD300E MUTATED 6 3 1
CD300E WILD-TYPE 87 79 102
'CD300E MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S1124.  Gene #113: 'CD300E MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
CD300E MUTATED 2 4 4
CD300E WILD-TYPE 61 163 44
'CD300E MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S1125.  Gene #113: 'CD300E MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
CD300E MUTATED 3 2 2 2 0
CD300E WILD-TYPE 54 86 71 37 12
'CD300E MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S1126.  Gene #113: 'CD300E MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
CD300E MUTATED 1 3 2 3
CD300E WILD-TYPE 72 68 32 88
'CD300E MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1127.  Gene #113: 'CD300E MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
CD300E MUTATED 3 3 3
CD300E WILD-TYPE 87 93 80
'CD300E MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S1128.  Gene #113: 'CD300E MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
CD300E MUTATED 3 4 1 1
CD300E WILD-TYPE 111 75 52 22
'ALDH5A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 1

Table S1129.  Gene #114: 'ALDH5A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
ALDH5A1 MUTATED 2 2 0 6
ALDH5A1 WILD-TYPE 80 49 47 92
'ALDH5A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S1130.  Gene #114: 'ALDH5A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
ALDH5A1 MUTATED 4 6 0
ALDH5A1 WILD-TYPE 97 99 72
'ALDH5A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S1131.  Gene #114: 'ALDH5A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ALDH5A1 MUTATED 3 1 2 1
ALDH5A1 WILD-TYPE 43 57 24 37
'ALDH5A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S1132.  Gene #114: 'ALDH5A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
ALDH5A1 MUTATED 1 2 2 2
ALDH5A1 WILD-TYPE 26 56 32 47
'ALDH5A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0181 (Fisher's exact test), Q value = 1

Table S1133.  Gene #114: 'ALDH5A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
ALDH5A1 MUTATED 0 6 4
ALDH5A1 WILD-TYPE 93 76 99

Figure S70.  Get High-res Image Gene #114: 'ALDH5A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ALDH5A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S1134.  Gene #114: 'ALDH5A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
ALDH5A1 MUTATED 1 9 0
ALDH5A1 WILD-TYPE 62 158 48
'ALDH5A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S1135.  Gene #114: 'ALDH5A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
ALDH5A1 MUTATED 1 5 2 2 0
ALDH5A1 WILD-TYPE 56 83 71 37 12
'ALDH5A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S1136.  Gene #114: 'ALDH5A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
ALDH5A1 MUTATED 2 2 2 4
ALDH5A1 WILD-TYPE 71 69 32 87
'ALDH5A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S1137.  Gene #114: 'ALDH5A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
ALDH5A1 MUTATED 4 4 2
ALDH5A1 WILD-TYPE 86 92 81
'ALDH5A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S1138.  Gene #114: 'ALDH5A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
ALDH5A1 MUTATED 5 3 0 2
ALDH5A1 WILD-TYPE 109 76 53 21
'SPRYD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0494 (Fisher's exact test), Q value = 1

Table S1139.  Gene #115: 'SPRYD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
SPRYD3 MUTATED 6 0 1 1
SPRYD3 WILD-TYPE 76 51 46 97

Figure S71.  Get High-res Image Gene #115: 'SPRYD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SPRYD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1140.  Gene #115: 'SPRYD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
SPRYD3 MUTATED 3 3 2
SPRYD3 WILD-TYPE 98 102 70
'SPRYD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S1141.  Gene #115: 'SPRYD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
SPRYD3 MUTATED 0 2 0 1
SPRYD3 WILD-TYPE 46 56 26 37
'SPRYD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S1142.  Gene #115: 'SPRYD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
SPRYD3 MUTATED 0 1 0 2
SPRYD3 WILD-TYPE 27 57 34 47
'SPRYD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S1143.  Gene #115: 'SPRYD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
SPRYD3 MUTATED 1 2 5
SPRYD3 WILD-TYPE 92 80 98
'SPRYD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S1144.  Gene #115: 'SPRYD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
SPRYD3 MUTATED 1 6 1
SPRYD3 WILD-TYPE 62 161 47
'SPRYD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 1

Table S1145.  Gene #115: 'SPRYD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
SPRYD3 MUTATED 3 2 0 3 0
SPRYD3 WILD-TYPE 54 86 73 36 12
'SPRYD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S1146.  Gene #115: 'SPRYD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
SPRYD3 MUTATED 2 1 1 4
SPRYD3 WILD-TYPE 71 70 33 87
'SPRYD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S1147.  Gene #115: 'SPRYD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
SPRYD3 MUTATED 2 4 2
SPRYD3 WILD-TYPE 88 92 81
'SPRYD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S1148.  Gene #115: 'SPRYD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
SPRYD3 MUTATED 5 1 1 1
SPRYD3 WILD-TYPE 109 78 52 22
'MAP3K5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S1149.  Gene #116: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
MAP3K5 MUTATED 6 2 2 10
MAP3K5 WILD-TYPE 76 49 45 88
'MAP3K5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 1

Table S1150.  Gene #116: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
MAP3K5 MUTATED 6 11 3
MAP3K5 WILD-TYPE 95 94 69
'MAP3K5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S1151.  Gene #116: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
MAP3K5 MUTATED 6 4 0 2
MAP3K5 WILD-TYPE 40 54 26 36
'MAP3K5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S1152.  Gene #116: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
MAP3K5 MUTATED 2 6 1 3
MAP3K5 WILD-TYPE 25 52 33 46
'MAP3K5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00833 (Fisher's exact test), Q value = 1

Table S1153.  Gene #116: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
MAP3K5 MUTATED 7 11 2
MAP3K5 WILD-TYPE 86 71 101

Figure S72.  Get High-res Image Gene #116: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MAP3K5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S1154.  Gene #116: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
MAP3K5 MUTATED 4 14 2
MAP3K5 WILD-TYPE 59 153 46
'MAP3K5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S1155.  Gene #116: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
MAP3K5 MUTATED 4 6 7 1 1
MAP3K5 WILD-TYPE 53 82 66 38 11
'MAP3K5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 1

Table S1156.  Gene #116: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
MAP3K5 MUTATED 4 8 1 6
MAP3K5 WILD-TYPE 69 63 33 85
'MAP3K5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.956 (Fisher's exact test), Q value = 1

Table S1157.  Gene #116: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
MAP3K5 MUTATED 7 6 6
MAP3K5 WILD-TYPE 83 90 77
'MAP3K5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S1158.  Gene #116: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
MAP3K5 MUTATED 7 10 1 1
MAP3K5 WILD-TYPE 107 69 52 22
'CASP8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0138 (Fisher's exact test), Q value = 1

Table S1159.  Gene #117: 'CASP8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
CASP8 MUTATED 1 2 5 1
CASP8 WILD-TYPE 81 49 42 97

Figure S73.  Get High-res Image Gene #117: 'CASP8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CASP8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S1160.  Gene #117: 'CASP8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
CASP8 MUTATED 5 3 1
CASP8 WILD-TYPE 96 102 71
'CASP8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S1161.  Gene #117: 'CASP8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CASP8 MUTATED 1 3 0 3
CASP8 WILD-TYPE 45 55 26 35
'CASP8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S1162.  Gene #117: 'CASP8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
CASP8 MUTATED 1 4 1 1
CASP8 WILD-TYPE 26 54 33 48
'CASP8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0905 (Fisher's exact test), Q value = 1

Table S1163.  Gene #117: 'CASP8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
CASP8 MUTATED 5 0 4
CASP8 WILD-TYPE 88 82 99
'CASP8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S1164.  Gene #117: 'CASP8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
CASP8 MUTATED 3 5 1
CASP8 WILD-TYPE 60 162 47
'CASP8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S1165.  Gene #117: 'CASP8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
CASP8 MUTATED 3 4 1 1 0
CASP8 WILD-TYPE 54 84 72 38 12
'CASP8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S1166.  Gene #117: 'CASP8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
CASP8 MUTATED 1 3 1 4
CASP8 WILD-TYPE 72 68 33 87
'CASP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S1167.  Gene #117: 'CASP8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
CASP8 MUTATED 4 4 1
CASP8 WILD-TYPE 86 92 82
'CASP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S1168.  Gene #117: 'CASP8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
CASP8 MUTATED 4 3 1 1
CASP8 WILD-TYPE 110 76 52 22
'SNCAIP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S1169.  Gene #118: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
SNCAIP MUTATED 17 4 10 18
SNCAIP WILD-TYPE 65 47 37 80
'SNCAIP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S1170.  Gene #118: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
SNCAIP MUTATED 18 20 11
SNCAIP WILD-TYPE 83 85 61
'SNCAIP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S1171.  Gene #118: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
SNCAIP MUTATED 10 9 2 6
SNCAIP WILD-TYPE 36 49 24 32
'SNCAIP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S1172.  Gene #118: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
SNCAIP MUTATED 5 11 5 6
SNCAIP WILD-TYPE 22 47 29 43
'SNCAIP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S1173.  Gene #118: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
SNCAIP MUTATED 16 16 17
SNCAIP WILD-TYPE 77 66 86
'SNCAIP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S1174.  Gene #118: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
SNCAIP MUTATED 10 31 8
SNCAIP WILD-TYPE 53 136 40
'SNCAIP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S1175.  Gene #118: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
SNCAIP MUTATED 10 18 10 8 1
SNCAIP WILD-TYPE 47 70 63 31 11
'SNCAIP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0693 (Fisher's exact test), Q value = 1

Table S1176.  Gene #118: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
SNCAIP MUTATED 7 12 5 23
SNCAIP WILD-TYPE 66 59 29 68
'SNCAIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S1177.  Gene #118: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
SNCAIP MUTATED 18 17 12
SNCAIP WILD-TYPE 72 79 71
'SNCAIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0711 (Fisher's exact test), Q value = 1

Table S1178.  Gene #118: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
SNCAIP MUTATED 27 12 4 4
SNCAIP WILD-TYPE 87 67 49 19
'HLA-DRA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S1179.  Gene #119: 'HLA-DRA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
HLA-DRA MUTATED 4 0 1 7
HLA-DRA WILD-TYPE 78 51 46 91
'HLA-DRA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 1

Table S1180.  Gene #119: 'HLA-DRA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
HLA-DRA MUTATED 3 6 3
HLA-DRA WILD-TYPE 98 99 69
'HLA-DRA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0657 (Fisher's exact test), Q value = 1

Table S1181.  Gene #119: 'HLA-DRA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
HLA-DRA MUTATED 5 2 0 0
HLA-DRA WILD-TYPE 41 56 26 38
'HLA-DRA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0939 (Fisher's exact test), Q value = 1

Table S1182.  Gene #119: 'HLA-DRA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
HLA-DRA MUTATED 3 3 1 0
HLA-DRA WILD-TYPE 24 55 33 49
'HLA-DRA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S1183.  Gene #119: 'HLA-DRA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
HLA-DRA MUTATED 6 3 3
HLA-DRA WILD-TYPE 87 79 100
'HLA-DRA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S1184.  Gene #119: 'HLA-DRA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
HLA-DRA MUTATED 2 6 4
HLA-DRA WILD-TYPE 61 161 44
'HLA-DRA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S1185.  Gene #119: 'HLA-DRA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
HLA-DRA MUTATED 3 2 4 1 1
HLA-DRA WILD-TYPE 54 86 69 38 11
'HLA-DRA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0578 (Fisher's exact test), Q value = 1

Table S1186.  Gene #119: 'HLA-DRA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
HLA-DRA MUTATED 1 7 1 2
HLA-DRA WILD-TYPE 72 64 33 89
'HLA-DRA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S1187.  Gene #119: 'HLA-DRA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
HLA-DRA MUTATED 5 1 5
HLA-DRA WILD-TYPE 85 95 78
'HLA-DRA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0592 (Fisher's exact test), Q value = 1

Table S1188.  Gene #119: 'HLA-DRA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
HLA-DRA MUTATED 3 7 0 1
HLA-DRA WILD-TYPE 111 72 53 22
'ACTC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0842 (Fisher's exact test), Q value = 1

Table S1189.  Gene #120: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
ACTC1 MUTATED 7 0 1 7
ACTC1 WILD-TYPE 75 51 46 91
'ACTC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S1190.  Gene #120: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
ACTC1 MUTATED 8 5 2
ACTC1 WILD-TYPE 93 100 70
'ACTC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S1191.  Gene #120: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ACTC1 MUTATED 5 2 1 2
ACTC1 WILD-TYPE 41 56 25 36
'ACTC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.57 (Fisher's exact test), Q value = 1

Table S1192.  Gene #120: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
ACTC1 MUTATED 3 4 1 2
ACTC1 WILD-TYPE 24 54 33 47
'ACTC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S1193.  Gene #120: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
ACTC1 MUTATED 3 6 6
ACTC1 WILD-TYPE 90 76 97
'ACTC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 1

Table S1194.  Gene #120: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
ACTC1 MUTATED 5 10 0
ACTC1 WILD-TYPE 58 157 48
'ACTC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 1

Table S1195.  Gene #120: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
ACTC1 MUTATED 1 4 7 3 0
ACTC1 WILD-TYPE 56 84 66 36 12
'ACTC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S1196.  Gene #120: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
ACTC1 MUTATED 5 3 3 4
ACTC1 WILD-TYPE 68 68 31 87
'ACTC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S1197.  Gene #120: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
ACTC1 MUTATED 3 5 7
ACTC1 WILD-TYPE 87 91 76
'ACTC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S1198.  Gene #120: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
ACTC1 MUTATED 4 3 6 2
ACTC1 WILD-TYPE 110 76 47 21
'ELOVL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S1199.  Gene #121: 'ELOVL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
ELOVL3 MUTATED 2 0 0 3
ELOVL3 WILD-TYPE 80 51 47 95
'ELOVL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1200.  Gene #121: 'ELOVL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
ELOVL3 MUTATED 2 2 1
ELOVL3 WILD-TYPE 99 103 71
'ELOVL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S1201.  Gene #121: 'ELOVL3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ELOVL3 MUTATED 0 1 1 1
ELOVL3 WILD-TYPE 46 57 25 37
'ELOVL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S1202.  Gene #121: 'ELOVL3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
ELOVL3 MUTATED 1 0 1 1
ELOVL3 WILD-TYPE 26 58 33 48
'ELOVL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S1203.  Gene #121: 'ELOVL3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
ELOVL3 MUTATED 0 2 3
ELOVL3 WILD-TYPE 93 80 100
'ELOVL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S1204.  Gene #121: 'ELOVL3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
ELOVL3 MUTATED 2 3 0
ELOVL3 WILD-TYPE 61 164 48
'ELOVL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S1205.  Gene #121: 'ELOVL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
ELOVL3 MUTATED 0 3 1 1 0
ELOVL3 WILD-TYPE 57 85 72 38 12
'ELOVL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S1206.  Gene #121: 'ELOVL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
ELOVL3 MUTATED 1 1 1 2
ELOVL3 WILD-TYPE 72 70 33 89
'ELOVL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1207.  Gene #121: 'ELOVL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
ELOVL3 MUTATED 2 2 1
ELOVL3 WILD-TYPE 88 94 82
'ELOVL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 1

Table S1208.  Gene #121: 'ELOVL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
ELOVL3 MUTATED 3 0 2 0
ELOVL3 WILD-TYPE 111 79 51 23
'THSD7B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 1

Table S1209.  Gene #122: 'THSD7B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
THSD7B MUTATED 28 15 10 36
THSD7B WILD-TYPE 54 36 37 62
'THSD7B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S1210.  Gene #122: 'THSD7B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
THSD7B MUTATED 35 36 18
THSD7B WILD-TYPE 66 69 54
'THSD7B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S1211.  Gene #122: 'THSD7B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
THSD7B MUTATED 19 16 8 14
THSD7B WILD-TYPE 27 42 18 24
'THSD7B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S1212.  Gene #122: 'THSD7B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
THSD7B MUTATED 12 17 11 17
THSD7B WILD-TYPE 15 41 23 32
'THSD7B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S1213.  Gene #122: 'THSD7B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
THSD7B MUTATED 26 31 32
THSD7B WILD-TYPE 67 51 71
'THSD7B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 1

Table S1214.  Gene #122: 'THSD7B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
THSD7B MUTATED 17 61 11
THSD7B WILD-TYPE 46 106 37
'THSD7B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.03 (Fisher's exact test), Q value = 1

Table S1215.  Gene #122: 'THSD7B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
THSD7B MUTATED 12 31 31 11 1
THSD7B WILD-TYPE 45 57 42 28 11

Figure S74.  Get High-res Image Gene #122: 'THSD7B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'THSD7B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S1216.  Gene #122: 'THSD7B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
THSD7B MUTATED 23 23 8 32
THSD7B WILD-TYPE 50 48 26 59
'THSD7B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 1

Table S1217.  Gene #122: 'THSD7B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
THSD7B MUTATED 23 32 31
THSD7B WILD-TYPE 67 64 52
'THSD7B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S1218.  Gene #122: 'THSD7B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
THSD7B MUTATED 42 24 15 5
THSD7B WILD-TYPE 72 55 38 18
'SLC27A5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S1219.  Gene #123: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
SLC27A5 MUTATED 2 2 1 4
SLC27A5 WILD-TYPE 80 49 46 94
'SLC27A5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S1220.  Gene #123: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
SLC27A5 MUTATED 5 2 2
SLC27A5 WILD-TYPE 96 103 70
'SLC27A5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S1221.  Gene #123: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
SLC27A5 MUTATED 0 3 0 1
SLC27A5 WILD-TYPE 46 55 26 37
'SLC27A5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.692 (Fisher's exact test), Q value = 1

Table S1222.  Gene #123: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
SLC27A5 MUTATED 0 2 0 2
SLC27A5 WILD-TYPE 27 56 34 47
'SLC27A5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S1223.  Gene #123: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
SLC27A5 MUTATED 3 2 4
SLC27A5 WILD-TYPE 90 80 99
'SLC27A5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1224.  Gene #123: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
SLC27A5 MUTATED 2 6 1
SLC27A5 WILD-TYPE 61 161 47
'SLC27A5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S1225.  Gene #123: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
SLC27A5 MUTATED 2 1 1 3 1
SLC27A5 WILD-TYPE 55 87 72 36 11
'SLC27A5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S1226.  Gene #123: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
SLC27A5 MUTATED 1 3 1 3
SLC27A5 WILD-TYPE 72 68 33 88
'SLC27A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S1227.  Gene #123: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
SLC27A5 MUTATED 5 1 2
SLC27A5 WILD-TYPE 85 95 81
'SLC27A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S1228.  Gene #123: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
SLC27A5 MUTATED 5 2 0 1
SLC27A5 WILD-TYPE 109 77 53 22
'PDE4DIP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S1229.  Gene #124: 'PDE4DIP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
PDE4DIP MUTATED 15 5 10 14
PDE4DIP WILD-TYPE 67 46 37 84
'PDE4DIP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0786 (Fisher's exact test), Q value = 1

Table S1230.  Gene #124: 'PDE4DIP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
PDE4DIP MUTATED 21 17 6
PDE4DIP WILD-TYPE 80 88 66
'PDE4DIP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S1231.  Gene #124: 'PDE4DIP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
PDE4DIP MUTATED 9 6 5 11
PDE4DIP WILD-TYPE 37 52 21 27
'PDE4DIP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S1232.  Gene #124: 'PDE4DIP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
PDE4DIP MUTATED 8 9 7 7
PDE4DIP WILD-TYPE 19 49 27 42
'PDE4DIP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S1233.  Gene #124: 'PDE4DIP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
PDE4DIP MUTATED 12 12 20
PDE4DIP WILD-TYPE 81 70 83
'PDE4DIP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S1234.  Gene #124: 'PDE4DIP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
PDE4DIP MUTATED 10 29 5
PDE4DIP WILD-TYPE 53 138 43
'PDE4DIP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S1235.  Gene #124: 'PDE4DIP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
PDE4DIP MUTATED 7 17 10 9 1
PDE4DIP WILD-TYPE 50 71 63 30 11
'PDE4DIP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S1236.  Gene #124: 'PDE4DIP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
PDE4DIP MUTATED 10 10 5 19
PDE4DIP WILD-TYPE 63 61 29 72
'PDE4DIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S1237.  Gene #124: 'PDE4DIP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
PDE4DIP MUTATED 18 15 11
PDE4DIP WILD-TYPE 72 81 72
'PDE4DIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 1

Table S1238.  Gene #124: 'PDE4DIP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
PDE4DIP MUTATED 23 12 7 2
PDE4DIP WILD-TYPE 91 67 46 21
'KANK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S1239.  Gene #125: 'KANK3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
KANK3 MUTATED 4 1 1 2
KANK3 WILD-TYPE 78 50 46 96
'KANK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 1

Table S1240.  Gene #125: 'KANK3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
KANK3 MUTATED 5 3 0
KANK3 WILD-TYPE 96 102 72
'KANK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S1241.  Gene #125: 'KANK3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
KANK3 MUTATED 1 3 0 0
KANK3 WILD-TYPE 45 55 26 38
'KANK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S1242.  Gene #125: 'KANK3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
KANK3 MUTATED 1 2 0 1
KANK3 WILD-TYPE 26 56 34 48
'KANK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0402 (Fisher's exact test), Q value = 1

Table S1243.  Gene #125: 'KANK3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
KANK3 MUTATED 0 2 6
KANK3 WILD-TYPE 93 80 97

Figure S75.  Get High-res Image Gene #125: 'KANK3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KANK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S1244.  Gene #125: 'KANK3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
KANK3 MUTATED 2 6 0
KANK3 WILD-TYPE 61 161 48
'KANK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S1245.  Gene #125: 'KANK3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
KANK3 MUTATED 2 2 2 2 0
KANK3 WILD-TYPE 55 86 71 37 12
'KANK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S1246.  Gene #125: 'KANK3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
KANK3 MUTATED 1 3 1 3
KANK3 WILD-TYPE 72 68 33 88
'KANK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S1247.  Gene #125: 'KANK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
KANK3 MUTATED 3 2 3
KANK3 WILD-TYPE 87 94 80
'KANK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S1248.  Gene #125: 'KANK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
KANK3 MUTATED 3 3 1 1
KANK3 WILD-TYPE 111 76 52 22
'RUNX1T1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S1249.  Gene #126: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
RUNX1T1 MUTATED 6 5 7 16
RUNX1T1 WILD-TYPE 76 46 40 82
'RUNX1T1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0278 (Fisher's exact test), Q value = 1

Table S1250.  Gene #126: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
RUNX1T1 MUTATED 17 14 3
RUNX1T1 WILD-TYPE 84 91 69

Figure S76.  Get High-res Image Gene #126: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RUNX1T1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S1251.  Gene #126: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
RUNX1T1 MUTATED 7 8 2 3
RUNX1T1 WILD-TYPE 39 50 24 35
'RUNX1T1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S1252.  Gene #126: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
RUNX1T1 MUTATED 6 6 3 5
RUNX1T1 WILD-TYPE 21 52 31 44
'RUNX1T1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S1253.  Gene #126: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
RUNX1T1 MUTATED 10 11 13
RUNX1T1 WILD-TYPE 83 71 90
'RUNX1T1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 1

Table S1254.  Gene #126: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
RUNX1T1 MUTATED 11 20 3
RUNX1T1 WILD-TYPE 52 147 45
'RUNX1T1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 1

Table S1255.  Gene #126: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
RUNX1T1 MUTATED 9 14 7 4 0
RUNX1T1 WILD-TYPE 48 74 66 35 12
'RUNX1T1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S1256.  Gene #126: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
RUNX1T1 MUTATED 9 10 2 13
RUNX1T1 WILD-TYPE 64 61 32 78
'RUNX1T1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S1257.  Gene #126: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
RUNX1T1 MUTATED 11 14 9
RUNX1T1 WILD-TYPE 79 82 74
'RUNX1T1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.292 (Fisher's exact test), Q value = 1

Table S1258.  Gene #126: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
RUNX1T1 MUTATED 18 11 3 2
RUNX1T1 WILD-TYPE 96 68 50 21
'WDR12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S1259.  Gene #127: 'WDR12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
WDR12 MUTATED 5 1 1 4
WDR12 WILD-TYPE 77 50 46 94
'WDR12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.537 (Fisher's exact test), Q value = 1

Table S1260.  Gene #127: 'WDR12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
WDR12 MUTATED 6 3 2
WDR12 WILD-TYPE 95 102 70
'WDR12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 1

Table S1261.  Gene #127: 'WDR12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
WDR12 MUTATED 3 2 1 4
WDR12 WILD-TYPE 43 56 25 34
'WDR12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S1262.  Gene #127: 'WDR12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
WDR12 MUTATED 2 4 0 4
WDR12 WILD-TYPE 25 54 34 45
'WDR12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S1263.  Gene #127: 'WDR12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
WDR12 MUTATED 5 2 4
WDR12 WILD-TYPE 88 80 99
'WDR12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S1264.  Gene #127: 'WDR12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
WDR12 MUTATED 2 6 3
WDR12 WILD-TYPE 61 161 45
'WDR12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1265.  Gene #127: 'WDR12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
WDR12 MUTATED 2 4 3 2 0
WDR12 WILD-TYPE 55 84 70 37 12
'WDR12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S1266.  Gene #127: 'WDR12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
WDR12 MUTATED 2 4 1 4
WDR12 WILD-TYPE 71 67 33 87
'WDR12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S1267.  Gene #127: 'WDR12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
WDR12 MUTATED 3 5 3
WDR12 WILD-TYPE 87 91 80
'WDR12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S1268.  Gene #127: 'WDR12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
WDR12 MUTATED 6 5 0 0
WDR12 WILD-TYPE 108 74 53 23
'POTEG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 1

Table S1269.  Gene #128: 'POTEG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
POTEG MUTATED 15 5 4 7
POTEG WILD-TYPE 67 46 43 91
'POTEG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0106 (Fisher's exact test), Q value = 1

Table S1270.  Gene #128: 'POTEG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
POTEG MUTATED 18 5 8
POTEG WILD-TYPE 83 100 64

Figure S77.  Get High-res Image Gene #128: 'POTEG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'POTEG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S1271.  Gene #128: 'POTEG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
POTEG MUTATED 3 5 2 7
POTEG WILD-TYPE 43 53 24 31
'POTEG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S1272.  Gene #128: 'POTEG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
POTEG MUTATED 2 8 4 3
POTEG WILD-TYPE 25 50 30 46
'POTEG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S1273.  Gene #128: 'POTEG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
POTEG MUTATED 11 7 13
POTEG WILD-TYPE 82 75 90
'POTEG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 1

Table S1274.  Gene #128: 'POTEG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
POTEG MUTATED 10 14 7
POTEG WILD-TYPE 53 153 41
'POTEG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S1275.  Gene #128: 'POTEG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
POTEG MUTATED 3 14 10 2 1
POTEG WILD-TYPE 54 74 63 37 11
'POTEG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S1276.  Gene #128: 'POTEG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
POTEG MUTATED 8 6 2 14
POTEG WILD-TYPE 65 65 32 77
'POTEG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0815 (Fisher's exact test), Q value = 1

Table S1277.  Gene #128: 'POTEG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
POTEG MUTATED 5 15 10
POTEG WILD-TYPE 85 81 73
'POTEG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S1278.  Gene #128: 'POTEG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
POTEG MUTATED 15 8 7 0
POTEG WILD-TYPE 99 71 46 23
'ITPR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S1279.  Gene #129: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
ITPR2 MUTATED 5 1 2 8
ITPR2 WILD-TYPE 77 50 45 90
'ITPR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S1280.  Gene #129: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
ITPR2 MUTATED 7 7 2
ITPR2 WILD-TYPE 94 98 70
'ITPR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1281.  Gene #129: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ITPR2 MUTATED 2 3 1 1
ITPR2 WILD-TYPE 44 55 25 37
'ITPR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S1282.  Gene #129: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
ITPR2 MUTATED 0 3 2 2
ITPR2 WILD-TYPE 27 55 32 47
'ITPR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S1283.  Gene #129: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
ITPR2 MUTATED 4 7 5
ITPR2 WILD-TYPE 89 75 98
'ITPR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S1284.  Gene #129: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
ITPR2 MUTATED 4 10 2
ITPR2 WILD-TYPE 59 157 46
'ITPR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 1

Table S1285.  Gene #129: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
ITPR2 MUTATED 4 3 4 3 1
ITPR2 WILD-TYPE 53 85 69 36 11
'ITPR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S1286.  Gene #129: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
ITPR2 MUTATED 3 6 2 4
ITPR2 WILD-TYPE 70 65 32 87
'ITPR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S1287.  Gene #129: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
ITPR2 MUTATED 6 4 5
ITPR2 WILD-TYPE 84 92 78
'ITPR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S1288.  Gene #129: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
ITPR2 MUTATED 7 6 1 1
ITPR2 WILD-TYPE 107 73 52 22
'CRNKL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S1289.  Gene #130: 'CRNKL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
CRNKL1 MUTATED 6 2 2 3
CRNKL1 WILD-TYPE 76 49 45 95
'CRNKL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S1290.  Gene #130: 'CRNKL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
CRNKL1 MUTATED 8 2 3
CRNKL1 WILD-TYPE 93 103 69
'CRNKL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S1291.  Gene #130: 'CRNKL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CRNKL1 MUTATED 4 3 0 2
CRNKL1 WILD-TYPE 42 55 26 36
'CRNKL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 1

Table S1292.  Gene #130: 'CRNKL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
CRNKL1 MUTATED 2 5 1 1
CRNKL1 WILD-TYPE 25 53 33 48
'CRNKL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S1293.  Gene #130: 'CRNKL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
CRNKL1 MUTATED 5 3 5
CRNKL1 WILD-TYPE 88 79 98
'CRNKL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S1294.  Gene #130: 'CRNKL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
CRNKL1 MUTATED 4 8 1
CRNKL1 WILD-TYPE 59 159 47
'CRNKL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 1

Table S1295.  Gene #130: 'CRNKL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
CRNKL1 MUTATED 5 2 2 3 1
CRNKL1 WILD-TYPE 52 86 71 36 11
'CRNKL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.533 (Fisher's exact test), Q value = 1

Table S1296.  Gene #130: 'CRNKL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
CRNKL1 MUTATED 2 4 3 4
CRNKL1 WILD-TYPE 71 67 31 87
'CRNKL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0302 (Fisher's exact test), Q value = 1

Table S1297.  Gene #130: 'CRNKL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
CRNKL1 MUTATED 9 2 2
CRNKL1 WILD-TYPE 81 94 81

Figure S78.  Get High-res Image Gene #130: 'CRNKL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CRNKL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S1298.  Gene #130: 'CRNKL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
CRNKL1 MUTATED 5 5 1 2
CRNKL1 WILD-TYPE 109 74 52 21
'DSP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.984 (Fisher's exact test), Q value = 1

Table S1299.  Gene #131: 'DSP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
DSP MUTATED 18 11 9 22
DSP WILD-TYPE 64 40 38 76
'DSP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S1300.  Gene #131: 'DSP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
DSP MUTATED 27 19 14
DSP WILD-TYPE 74 86 58
'DSP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S1301.  Gene #131: 'DSP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
DSP MUTATED 8 14 4 14
DSP WILD-TYPE 38 44 22 24
'DSP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S1302.  Gene #131: 'DSP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
DSP MUTATED 7 13 7 13
DSP WILD-TYPE 20 45 27 36
'DSP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S1303.  Gene #131: 'DSP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
DSP MUTATED 16 22 22
DSP WILD-TYPE 77 60 81
'DSP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S1304.  Gene #131: 'DSP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
DSP MUTATED 14 39 7
DSP WILD-TYPE 49 128 41
'DSP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S1305.  Gene #131: 'DSP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
DSP MUTATED 15 21 12 9 1
DSP WILD-TYPE 42 67 61 30 11
'DSP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S1306.  Gene #131: 'DSP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
DSP MUTATED 15 16 6 21
DSP WILD-TYPE 58 55 28 70
'DSP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S1307.  Gene #131: 'DSP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
DSP MUTATED 20 23 15
DSP WILD-TYPE 70 73 68
'DSP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0607 (Fisher's exact test), Q value = 1

Table S1308.  Gene #131: 'DSP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
DSP MUTATED 33 15 6 4
DSP WILD-TYPE 81 64 47 19
'SF3B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.981 (Fisher's exact test), Q value = 1

Table S1309.  Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
SF3B1 MUTATED 5 2 2 5
SF3B1 WILD-TYPE 77 49 45 93
'SF3B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 1

Table S1310.  Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
SF3B1 MUTATED 8 3 3
SF3B1 WILD-TYPE 93 102 69
'SF3B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.035 (Fisher's exact test), Q value = 1

Table S1311.  Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
SF3B1 MUTATED 0 3 3 5
SF3B1 WILD-TYPE 46 55 23 33

Figure S79.  Get High-res Image Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SF3B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S1312.  Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
SF3B1 MUTATED 0 5 3 3
SF3B1 WILD-TYPE 27 53 31 46
'SF3B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0509 (Fisher's exact test), Q value = 1

Table S1313.  Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
SF3B1 MUTATED 1 7 6
SF3B1 WILD-TYPE 92 75 97
'SF3B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S1314.  Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
SF3B1 MUTATED 5 9 0
SF3B1 WILD-TYPE 58 158 48
'SF3B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0374 (Fisher's exact test), Q value = 1

Table S1315.  Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
SF3B1 MUTATED 3 9 0 2 0
SF3B1 WILD-TYPE 54 79 73 37 12

Figure S80.  Get High-res Image Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SF3B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0256 (Fisher's exact test), Q value = 1

Table S1316.  Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
SF3B1 MUTATED 4 0 1 9
SF3B1 WILD-TYPE 69 71 33 82

Figure S81.  Get High-res Image Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SF3B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 9e-04 (Fisher's exact test), Q value = 1

Table S1317.  Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
SF3B1 MUTATED 3 11 0
SF3B1 WILD-TYPE 87 85 83

Figure S82.  Get High-res Image Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SF3B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00013 (Fisher's exact test), Q value = 0.19

Table S1318.  Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
SF3B1 MUTATED 14 0 0 0
SF3B1 WILD-TYPE 100 79 53 23

Figure S83.  Get High-res Image Gene #132: 'SF3B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CAGE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1319.  Gene #133: 'CAGE1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
CAGE1 MUTATED 3 2 2 4
CAGE1 WILD-TYPE 79 49 45 94
'CAGE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S1320.  Gene #133: 'CAGE1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
CAGE1 MUTATED 5 4 2
CAGE1 WILD-TYPE 96 101 70
'CAGE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S1321.  Gene #133: 'CAGE1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CAGE1 MUTATED 3 2 2 2
CAGE1 WILD-TYPE 43 56 24 36
'CAGE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0593 (Fisher's exact test), Q value = 1

Table S1322.  Gene #133: 'CAGE1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
CAGE1 MUTATED 2 0 3 4
CAGE1 WILD-TYPE 25 58 31 45
'CAGE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S1323.  Gene #133: 'CAGE1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
CAGE1 MUTATED 3 4 4
CAGE1 WILD-TYPE 90 78 99
'CAGE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S1324.  Gene #133: 'CAGE1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
CAGE1 MUTATED 3 7 1
CAGE1 WILD-TYPE 60 160 47
'CAGE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S1325.  Gene #133: 'CAGE1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
CAGE1 MUTATED 4 3 4 0 0
CAGE1 WILD-TYPE 53 85 69 39 12
'CAGE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.722 (Fisher's exact test), Q value = 1

Table S1326.  Gene #133: 'CAGE1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
CAGE1 MUTATED 4 3 0 4
CAGE1 WILD-TYPE 69 68 34 87
'CAGE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S1327.  Gene #133: 'CAGE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
CAGE1 MUTATED 3 4 4
CAGE1 WILD-TYPE 87 92 79
'CAGE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S1328.  Gene #133: 'CAGE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
CAGE1 MUTATED 6 3 2 0
CAGE1 WILD-TYPE 108 76 51 23
'DDX43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S1329.  Gene #134: 'DDX43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
DDX43 MUTATED 4 1 0 6
DDX43 WILD-TYPE 78 50 47 92
'DDX43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S1330.  Gene #134: 'DDX43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
DDX43 MUTATED 3 5 3
DDX43 WILD-TYPE 98 100 69
'DDX43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S1331.  Gene #134: 'DDX43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
DDX43 MUTATED 3 3 0 1
DDX43 WILD-TYPE 43 55 26 37
'DDX43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1332.  Gene #134: 'DDX43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
DDX43 MUTATED 1 3 1 2
DDX43 WILD-TYPE 26 55 33 47
'DDX43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 1

Table S1333.  Gene #134: 'DDX43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
DDX43 MUTATED 2 6 3
DDX43 WILD-TYPE 91 76 100
'DDX43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S1334.  Gene #134: 'DDX43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
DDX43 MUTATED 2 8 1
DDX43 WILD-TYPE 61 159 47
'DDX43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1335.  Gene #134: 'DDX43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
DDX43 MUTATED 2 4 3 2 0
DDX43 WILD-TYPE 55 84 70 37 12
'DDX43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1336.  Gene #134: 'DDX43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
DDX43 MUTATED 3 3 1 4
DDX43 WILD-TYPE 70 68 33 87
'DDX43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S1337.  Gene #134: 'DDX43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
DDX43 MUTATED 3 3 5
DDX43 WILD-TYPE 87 93 78
'DDX43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S1338.  Gene #134: 'DDX43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
DDX43 MUTATED 6 3 1 1
DDX43 WILD-TYPE 108 76 52 22
'CYP3A7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S1339.  Gene #135: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
CYP3A7 MUTATED 7 4 3 11
CYP3A7 WILD-TYPE 75 47 44 87
'CYP3A7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S1340.  Gene #135: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
CYP3A7 MUTATED 10 12 3
CYP3A7 WILD-TYPE 91 93 69
'CYP3A7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S1341.  Gene #135: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CYP3A7 MUTATED 5 3 2 5
CYP3A7 WILD-TYPE 41 55 24 33
'CYP3A7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S1342.  Gene #135: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
CYP3A7 MUTATED 3 4 3 5
CYP3A7 WILD-TYPE 24 54 31 44
'CYP3A7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 1

Table S1343.  Gene #135: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
CYP3A7 MUTATED 4 10 11
CYP3A7 WILD-TYPE 89 72 92
'CYP3A7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S1344.  Gene #135: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
CYP3A7 MUTATED 6 17 2
CYP3A7 WILD-TYPE 57 150 46
'CYP3A7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S1345.  Gene #135: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
CYP3A7 MUTATED 6 11 6 1 0
CYP3A7 WILD-TYPE 51 77 67 38 12
'CYP3A7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S1346.  Gene #135: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
CYP3A7 MUTATED 8 5 1 10
CYP3A7 WILD-TYPE 65 66 33 81
'CYP3A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S1347.  Gene #135: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
CYP3A7 MUTATED 8 11 5
CYP3A7 WILD-TYPE 82 85 78
'CYP3A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S1348.  Gene #135: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
CYP3A7 MUTATED 13 7 4 0
CYP3A7 WILD-TYPE 101 72 49 23
'VGLL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S1349.  Gene #136: 'VGLL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
VGLL1 MUTATED 1 1 0 4
VGLL1 WILD-TYPE 81 50 47 94
'VGLL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S1350.  Gene #136: 'VGLL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
VGLL1 MUTATED 1 3 2
VGLL1 WILD-TYPE 100 102 70
'VGLL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1351.  Gene #136: 'VGLL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
VGLL1 MUTATED 1 2 0 1
VGLL1 WILD-TYPE 45 56 26 37
'VGLL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S1352.  Gene #136: 'VGLL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
VGLL1 MUTATED 1 2 0 1
VGLL1 WILD-TYPE 26 56 34 48
'VGLL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S1353.  Gene #136: 'VGLL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
VGLL1 MUTATED 3 2 1
VGLL1 WILD-TYPE 90 80 102
'VGLL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S1354.  Gene #136: 'VGLL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
VGLL1 MUTATED 1 5 0
VGLL1 WILD-TYPE 62 162 48
'VGLL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 1

Table S1355.  Gene #136: 'VGLL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
VGLL1 MUTATED 2 0 3 0 0
VGLL1 WILD-TYPE 55 88 70 39 12
'VGLL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S1356.  Gene #136: 'VGLL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
VGLL1 MUTATED 1 3 0 1
VGLL1 WILD-TYPE 72 68 34 90
'VGLL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S1357.  Gene #136: 'VGLL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
VGLL1 MUTATED 2 0 3
VGLL1 WILD-TYPE 88 96 80
'VGLL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.502 (Fisher's exact test), Q value = 1

Table S1358.  Gene #136: 'VGLL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
VGLL1 MUTATED 1 3 1 0
VGLL1 WILD-TYPE 113 76 52 23
'GML MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0251 (Fisher's exact test), Q value = 1

Table S1359.  Gene #137: 'GML MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
GML MUTATED 5 0 4 1
GML WILD-TYPE 77 51 43 97

Figure S84.  Get High-res Image Gene #137: 'GML MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GML MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S1360.  Gene #137: 'GML MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
GML MUTATED 2 4 4
GML WILD-TYPE 99 101 68
'GML MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S1361.  Gene #137: 'GML MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
GML MUTATED 1 3 1 1
GML WILD-TYPE 45 55 25 37
'GML MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S1362.  Gene #137: 'GML MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
GML MUTATED 0 2 0 4
GML WILD-TYPE 27 56 34 45
'GML MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S1363.  Gene #137: 'GML MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
GML MUTATED 4 2 4
GML WILD-TYPE 89 80 99
'GML MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S1364.  Gene #137: 'GML MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
GML MUTATED 3 6 1
GML WILD-TYPE 60 161 47
'GML MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S1365.  Gene #137: 'GML MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
GML MUTATED 2 6 2 0 0
GML WILD-TYPE 55 82 71 39 12
'GML MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 1

Table S1366.  Gene #137: 'GML MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
GML MUTATED 4 3 0 3
GML WILD-TYPE 69 68 34 88
'GML MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0808 (Fisher's exact test), Q value = 1

Table S1367.  Gene #137: 'GML MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
GML MUTATED 1 7 2
GML WILD-TYPE 89 89 81
'GML MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 1

Table S1368.  Gene #137: 'GML MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
GML MUTATED 7 3 0 0
GML WILD-TYPE 107 76 53 23
'GZMA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S1369.  Gene #138: 'GZMA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
GZMA MUTATED 3 1 1 6
GZMA WILD-TYPE 79 50 46 92
'GZMA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S1370.  Gene #138: 'GZMA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
GZMA MUTATED 6 4 1
GZMA WILD-TYPE 95 101 71
'GZMA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S1371.  Gene #138: 'GZMA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
GZMA MUTATED 4 2 1 2
GZMA WILD-TYPE 42 56 25 36
'GZMA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S1372.  Gene #138: 'GZMA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
GZMA MUTATED 1 3 3 2
GZMA WILD-TYPE 26 55 31 47
'GZMA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S1373.  Gene #138: 'GZMA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
GZMA MUTATED 3 3 5
GZMA WILD-TYPE 90 79 98
'GZMA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S1374.  Gene #138: 'GZMA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
GZMA MUTATED 3 7 1
GZMA WILD-TYPE 60 160 47
'GZMA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S1375.  Gene #138: 'GZMA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
GZMA MUTATED 1 6 2 1 1
GZMA WILD-TYPE 56 82 71 38 11
'GZMA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S1376.  Gene #138: 'GZMA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
GZMA MUTATED 2 3 1 5
GZMA WILD-TYPE 71 68 33 86
'GZMA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S1377.  Gene #138: 'GZMA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
GZMA MUTATED 4 5 2
GZMA WILD-TYPE 86 91 81
'GZMA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S1378.  Gene #138: 'GZMA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
GZMA MUTATED 7 3 0 1
GZMA WILD-TYPE 107 76 53 22
'NPTX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.959 (Fisher's exact test), Q value = 1

Table S1379.  Gene #139: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
NPTX1 MUTATED 2 2 1 3
NPTX1 WILD-TYPE 80 49 46 95
'NPTX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 1

Table S1380.  Gene #139: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
NPTX1 MUTATED 5 2 1
NPTX1 WILD-TYPE 96 103 71
'NPTX1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S1381.  Gene #139: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
NPTX1 MUTATED 0 1 1 2
NPTX1 WILD-TYPE 46 57 25 36
'NPTX1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S1382.  Gene #139: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
NPTX1 MUTATED 0 2 0 2
NPTX1 WILD-TYPE 27 56 34 47
'NPTX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0777 (Fisher's exact test), Q value = 1

Table S1383.  Gene #139: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
NPTX1 MUTATED 0 4 4
NPTX1 WILD-TYPE 93 78 99
'NPTX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S1384.  Gene #139: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
NPTX1 MUTATED 3 5 0
NPTX1 WILD-TYPE 60 162 48
'NPTX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S1385.  Gene #139: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
NPTX1 MUTATED 3 4 1 0 0
NPTX1 WILD-TYPE 54 84 72 39 12
'NPTX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.068 (Fisher's exact test), Q value = 1

Table S1386.  Gene #139: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
NPTX1 MUTATED 0 2 0 6
NPTX1 WILD-TYPE 73 69 34 85
'NPTX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S1387.  Gene #139: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
NPTX1 MUTATED 3 4 1
NPTX1 WILD-TYPE 87 92 82
'NPTX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S1388.  Gene #139: 'NPTX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
NPTX1 MUTATED 5 3 0 0
NPTX1 WILD-TYPE 109 76 53 23
'DACT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 1

Table S1389.  Gene #140: 'DACT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
DACT1 MUTATED 3 2 0 8
DACT1 WILD-TYPE 79 49 47 90
'DACT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S1390.  Gene #140: 'DACT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
DACT1 MUTATED 4 6 3
DACT1 WILD-TYPE 97 99 69
'DACT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 1

Table S1391.  Gene #140: 'DACT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
DACT1 MUTATED 4 1 0 1
DACT1 WILD-TYPE 42 57 26 37
'DACT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S1392.  Gene #140: 'DACT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
DACT1 MUTATED 1 3 0 2
DACT1 WILD-TYPE 26 55 34 47
'DACT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S1393.  Gene #140: 'DACT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
DACT1 MUTATED 3 7 3
DACT1 WILD-TYPE 90 75 100
'DACT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S1394.  Gene #140: 'DACT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
DACT1 MUTATED 1 11 1
DACT1 WILD-TYPE 62 156 47
'DACT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.97 (Fisher's exact test), Q value = 1

Table S1395.  Gene #140: 'DACT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
DACT1 MUTATED 2 4 4 1 0
DACT1 WILD-TYPE 55 84 69 38 12
'DACT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.97 (Fisher's exact test), Q value = 1

Table S1396.  Gene #140: 'DACT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
DACT1 MUTATED 4 3 1 3
DACT1 WILD-TYPE 69 68 33 88
'DACT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S1397.  Gene #140: 'DACT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
DACT1 MUTATED 3 5 3
DACT1 WILD-TYPE 87 91 80
'DACT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S1398.  Gene #140: 'DACT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
DACT1 MUTATED 5 4 2 0
DACT1 WILD-TYPE 109 75 51 23
'STK19 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S1399.  Gene #141: 'STK19 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
STK19 MUTATED 3 3 1 6
STK19 WILD-TYPE 79 48 46 92
'STK19 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0575 (Fisher's exact test), Q value = 1

Table S1400.  Gene #141: 'STK19 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
STK19 MUTATED 6 7 0
STK19 WILD-TYPE 95 98 72
'STK19 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 1

Table S1401.  Gene #141: 'STK19 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
STK19 MUTATED 2 0 2 2
STK19 WILD-TYPE 44 58 24 36
'STK19 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S1402.  Gene #141: 'STK19 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
STK19 MUTATED 0 3 1 2
STK19 WILD-TYPE 27 55 33 47
'STK19 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S1403.  Gene #141: 'STK19 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
STK19 MUTATED 3 5 5
STK19 WILD-TYPE 90 77 98
'STK19 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 1

Table S1404.  Gene #141: 'STK19 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
STK19 MUTATED 2 11 0
STK19 WILD-TYPE 61 156 48
'STK19 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S1405.  Gene #141: 'STK19 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
STK19 MUTATED 3 7 2 0 0
STK19 WILD-TYPE 54 81 71 39 12
'STK19 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S1406.  Gene #141: 'STK19 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
STK19 MUTATED 3 3 0 6
STK19 WILD-TYPE 70 68 34 85
'STK19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.053 (Fisher's exact test), Q value = 1

Table S1407.  Gene #141: 'STK19 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
STK19 MUTATED 1 8 3
STK19 WILD-TYPE 89 88 80
'STK19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 1

Table S1408.  Gene #141: 'STK19 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
STK19 MUTATED 8 3 1 0
STK19 WILD-TYPE 106 76 52 23
'STK31 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 1

Table S1409.  Gene #142: 'STK31 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
STK31 MUTATED 9 7 3 17
STK31 WILD-TYPE 73 44 44 81
'STK31 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0615 (Fisher's exact test), Q value = 1

Table S1410.  Gene #142: 'STK31 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
STK31 MUTATED 14 18 4
STK31 WILD-TYPE 87 87 68
'STK31 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S1411.  Gene #142: 'STK31 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
STK31 MUTATED 6 8 2 9
STK31 WILD-TYPE 40 50 24 29
'STK31 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S1412.  Gene #142: 'STK31 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
STK31 MUTATED 4 11 5 5
STK31 WILD-TYPE 23 47 29 44
'STK31 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0016 (Fisher's exact test), Q value = 1

Table S1413.  Gene #142: 'STK31 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
STK31 MUTATED 4 18 14
STK31 WILD-TYPE 89 64 89

Figure S85.  Get High-res Image Gene #142: 'STK31 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'STK31 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00881 (Fisher's exact test), Q value = 1

Table S1414.  Gene #142: 'STK31 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
STK31 MUTATED 6 29 1
STK31 WILD-TYPE 57 138 47

Figure S86.  Get High-res Image Gene #142: 'STK31 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'STK31 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S1415.  Gene #142: 'STK31 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
STK31 MUTATED 8 13 8 5 0
STK31 WILD-TYPE 49 75 65 34 12
'STK31 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.988 (Fisher's exact test), Q value = 1

Table S1416.  Gene #142: 'STK31 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
STK31 MUTATED 9 10 4 11
STK31 WILD-TYPE 64 61 30 80
'STK31 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S1417.  Gene #142: 'STK31 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
STK31 MUTATED 12 13 9
STK31 WILD-TYPE 78 83 74
'STK31 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S1418.  Gene #142: 'STK31 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
STK31 MUTATED 20 10 3 1
STK31 WILD-TYPE 94 69 50 22
'ROS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0201 (Fisher's exact test), Q value = 1

Table S1419.  Gene #143: 'ROS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
ROS1 MUTATED 25 5 11 16
ROS1 WILD-TYPE 57 46 36 82

Figure S87.  Get High-res Image Gene #143: 'ROS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ROS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0285 (Fisher's exact test), Q value = 1

Table S1420.  Gene #143: 'ROS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
ROS1 MUTATED 28 21 8
ROS1 WILD-TYPE 73 84 64

Figure S88.  Get High-res Image Gene #143: 'ROS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ROS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S1421.  Gene #143: 'ROS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ROS1 MUTATED 10 9 6 7
ROS1 WILD-TYPE 36 49 20 31
'ROS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S1422.  Gene #143: 'ROS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
ROS1 MUTATED 6 9 8 9
ROS1 WILD-TYPE 21 49 26 40
'ROS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.964 (Fisher's exact test), Q value = 1

Table S1423.  Gene #143: 'ROS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
ROS1 MUTATED 20 16 21
ROS1 WILD-TYPE 73 66 82
'ROS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S1424.  Gene #143: 'ROS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
ROS1 MUTATED 14 32 11
ROS1 WILD-TYPE 49 135 37
'ROS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0561 (Fisher's exact test), Q value = 1

Table S1425.  Gene #143: 'ROS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
ROS1 MUTATED 8 21 9 13 2
ROS1 WILD-TYPE 49 67 64 26 10
'ROS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0755 (Fisher's exact test), Q value = 1

Table S1426.  Gene #143: 'ROS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
ROS1 MUTATED 10 10 10 23
ROS1 WILD-TYPE 63 61 24 68
'ROS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S1427.  Gene #143: 'ROS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
ROS1 MUTATED 21 22 10
ROS1 WILD-TYPE 69 74 73
'ROS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S1428.  Gene #143: 'ROS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
ROS1 MUTATED 27 11 8 7
ROS1 WILD-TYPE 87 68 45 16
'KCNB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0763 (Fisher's exact test), Q value = 1

Table S1429.  Gene #144: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
KCNB2 MUTATED 16 5 11 27
KCNB2 WILD-TYPE 66 46 36 71
'KCNB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0424 (Fisher's exact test), Q value = 1

Table S1430.  Gene #144: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
KCNB2 MUTATED 26 25 8
KCNB2 WILD-TYPE 75 80 64

Figure S89.  Get High-res Image Gene #144: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KCNB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 1

Table S1431.  Gene #144: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
KCNB2 MUTATED 13 10 10 8
KCNB2 WILD-TYPE 33 48 16 30
'KCNB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S1432.  Gene #144: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
KCNB2 MUTATED 9 11 8 13
KCNB2 WILD-TYPE 18 47 26 36
'KCNB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S1433.  Gene #144: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
KCNB2 MUTATED 15 19 25
KCNB2 WILD-TYPE 78 63 78
'KCNB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S1434.  Gene #144: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
KCNB2 MUTATED 11 40 8
KCNB2 WILD-TYPE 52 127 40
'KCNB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S1435.  Gene #144: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
KCNB2 MUTATED 14 17 14 11 1
KCNB2 WILD-TYPE 43 71 59 28 11
'KCNB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S1436.  Gene #144: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
KCNB2 MUTATED 14 13 10 20
KCNB2 WILD-TYPE 59 58 24 71
'KCNB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 1

Table S1437.  Gene #144: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
KCNB2 MUTATED 23 18 16
KCNB2 WILD-TYPE 67 78 67
'KCNB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S1438.  Gene #144: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
KCNB2 MUTATED 29 13 9 6
KCNB2 WILD-TYPE 85 66 44 17
'ART3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S1439.  Gene #145: 'ART3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
ART3 MUTATED 3 0 3 6
ART3 WILD-TYPE 79 51 44 92
'ART3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S1440.  Gene #145: 'ART3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
ART3 MUTATED 5 6 1
ART3 WILD-TYPE 96 99 71
'ART3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S1441.  Gene #145: 'ART3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
ART3 MUTATED 2 3 2 1
ART3 WILD-TYPE 44 55 24 37
'ART3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 1

Table S1442.  Gene #145: 'ART3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
ART3 MUTATED 0 2 1 5
ART3 WILD-TYPE 27 56 33 44
'ART3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S1443.  Gene #145: 'ART3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
ART3 MUTATED 4 5 3
ART3 WILD-TYPE 89 77 100
'ART3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.918 (Fisher's exact test), Q value = 1

Table S1444.  Gene #145: 'ART3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
ART3 MUTATED 2 8 2
ART3 WILD-TYPE 61 159 46
'ART3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S1445.  Gene #145: 'ART3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
ART3 MUTATED 2 3 3 2 1
ART3 WILD-TYPE 55 85 70 37 11
'ART3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S1446.  Gene #145: 'ART3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
ART3 MUTATED 2 4 1 4
ART3 WILD-TYPE 71 67 33 87
'ART3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S1447.  Gene #145: 'ART3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
ART3 MUTATED 4 3 4
ART3 WILD-TYPE 86 93 79
'ART3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S1448.  Gene #145: 'ART3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
ART3 MUTATED 5 4 1 1
ART3 WILD-TYPE 109 75 52 22
'CLDN4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S1449.  Gene #146: 'CLDN4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
CLDN4 MUTATED 5 1 1 4
CLDN4 WILD-TYPE 77 50 46 94
'CLDN4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 1

Table S1450.  Gene #146: 'CLDN4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
CLDN4 MUTATED 6 3 2
CLDN4 WILD-TYPE 95 102 70
'CLDN4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S1451.  Gene #146: 'CLDN4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
CLDN4 MUTATED 2 1 0 2
CLDN4 WILD-TYPE 44 57 26 36
'CLDN4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.664 (Fisher's exact test), Q value = 1

Table S1452.  Gene #146: 'CLDN4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
CLDN4 MUTATED 1 1 2 1
CLDN4 WILD-TYPE 26 57 32 48
'CLDN4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S1453.  Gene #146: 'CLDN4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
CLDN4 MUTATED 4 4 3
CLDN4 WILD-TYPE 89 78 100
'CLDN4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S1454.  Gene #146: 'CLDN4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
CLDN4 MUTATED 3 7 1
CLDN4 WILD-TYPE 60 160 47
'CLDN4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S1455.  Gene #146: 'CLDN4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
CLDN4 MUTATED 3 2 3 1 1
CLDN4 WILD-TYPE 54 86 70 38 11
'CLDN4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S1456.  Gene #146: 'CLDN4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
CLDN4 MUTATED 1 5 1 3
CLDN4 WILD-TYPE 72 66 33 88
'CLDN4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S1457.  Gene #146: 'CLDN4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
CLDN4 MUTATED 4 2 4
CLDN4 WILD-TYPE 86 94 79
'CLDN4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 1

Table S1458.  Gene #146: 'CLDN4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
CLDN4 MUTATED 4 5 0 1
CLDN4 WILD-TYPE 110 74 53 22
'RAG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S1459.  Gene #147: 'RAG2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 51 47 98
RAG2 MUTATED 4 2 5 7
RAG2 WILD-TYPE 78 49 42 91
'RAG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S1460.  Gene #147: 'RAG2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 101 105 72
RAG2 MUTATED 6 9 3
RAG2 WILD-TYPE 95 96 69
'RAG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 1

Table S1461.  Gene #147: 'RAG2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 58 26 38
RAG2 MUTATED 6 6 0 2
RAG2 WILD-TYPE 40 52 26 36
'RAG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S1462.  Gene #147: 'RAG2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 27 58 34 49
RAG2 MUTATED 4 6 2 2
RAG2 WILD-TYPE 23 52 32 47
'RAG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S1463.  Gene #147: 'RAG2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 82 103
RAG2 MUTATED 9 6 3
RAG2 WILD-TYPE 84 76 100
'RAG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.334 (Fisher's exact test), Q value = 1

Table S1464.  Gene #147: 'RAG2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 63 167 48
RAG2 MUTATED 2 11 5
RAG2 WILD-TYPE 61 156 43
'RAG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S1465.  Gene #147: 'RAG2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 57 88 73 39 12
RAG2 MUTATED 4 4 8 2 0
RAG2 WILD-TYPE 53 84 65 37 12
'RAG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S1466.  Gene #147: 'RAG2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 73 71 34 91
RAG2 MUTATED 5 6 2 5
RAG2 WILD-TYPE 68 65 32 86
'RAG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S1467.  Gene #147: 'RAG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 90 96 83
RAG2 MUTATED 6 4 8
RAG2 WILD-TYPE 84 92 75
'RAG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S1468.  Gene #147: 'RAG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 114 79 53 23
RAG2 MUTATED 5 7 4 2
RAG2 WILD-TYPE 109 72 49 21
Methods & Data
Input

  • Mutation data file = transformed.cor.cli.txt

  • Molecular subtypes file = SKCM-TM.transferedmergedcluster.txt

  • Number of patients = 278

  • Number of significantly mutated genes = 147

  • Number of Molecular subtypes = 10

  • Exclude genes that fewer than K tumors have mutations, K = 3

Fisher's exact test

For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R

Q value calculation

For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.

Download Results

In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.

References
[1] Fisher, R.A., On the interpretation of chi-square from contingency tables, and the calculation of P, Journal of the Royal Statistical Society 85(1):87-94 (1922)
[2] Benjamini and Hochberg, Controlling the false discovery rate: a practical and powerful approach to multiple testing, Journal of the Royal Statistical Society Series B 59:289-300 (1995)
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