name	nmut	n_coding	n_flank	n_coding_nonsilent	fracflank	callscheme	callscheme_name	N_tot	nsil_tot	nnon_tot	rate_sil	rate_non
TCGA-B7-5816-01A-21D-1600-08	1454	1438	16	1071	1.100413e-02	0	coding only	34834024	366	1062	1.050697e-05	3.048743e-05
TCGA-B7-5818-01A-11D-1600-08	475	467	8	351	1.684211e-02	0	coding only	34834024	115	346	3.301370e-06	9.932817e-06
TCGA-BR-4183-01A-02D-1126-08	83	73	10	52	1.204819e-01	0	coding only	34834024	21	50	6.028589e-07	1.435378e-06
TCGA-BR-4184-01A-01D-1126-08	4609	4533	76	3229	1.648948e-02	0	coding only	34834024	1288	3193	3.697534e-05	9.166325e-05
TCGA-BR-4187-01A-01D-1126-08	50	42	8	31	1.600000e-01	0	coding only	34834024	11	29	3.157832e-07	8.325194e-07
TCGA-BR-4188-01A-01D-1126-08	99	93	6	71	6.060606e-02	0	coding only	34834024	22	69	6.315664e-07	1.980822e-06
TCGA-BR-4191-01A-02D-1126-08	236	228	8	177	3.389831e-02	1	exome+100bp flanks	34834024	50	171	1.435378e-06	4.908994e-06
TCGA-BR-4201-01A-01D-1126-08	1448	1409	39	987	2.693370e-02	0	coding only	34834024	421	979	1.208588e-05	2.810471e-05
TCGA-BR-4253-01A-01D-1126-08	116	106	10	79	8.620690e-02	1	exome+100bp flanks	34834024	25	77	7.176891e-07	2.210482e-06
TCGA-BR-4255-01A-01D-1126-08	86	77	9	48	1.046512e-01	0	coding only	34834024	29	46	8.325194e-07	1.320548e-06
TCGA-BR-4256-01A-01D-1126-08	1119	1096	23	760	2.055407e-02	0	coding only	34834024	332	749	9.530912e-06	2.150197e-05
TCGA-BR-4257-01A-01D-1126-08	1227	1208	19	828	1.548492e-02	0	coding only	34834024	372	815	1.067921e-05	2.339667e-05
TCGA-BR-4267-01A-01D-1126-08	115	108	7	81	6.086957e-02	1	exome+100bp flanks	34834024	27	77	7.751042e-07	2.210482e-06
TCGA-BR-4279-01A-01D-1126-08	71	64	7	38	9.859155e-02	0	coding only	34834024	24	37	6.889816e-07	1.062180e-06
TCGA-BR-4280-01A-01D-1126-08	879	847	32	650	3.640501e-02	1	exome+100bp flanks	34834024	196	642	5.626683e-06	1.843026e-05
TCGA-BR-4292-01A-01D-1126-08	1566	1528	38	1105	2.426564e-02	0	coding only	34834024	413	1087	1.185622e-05	3.120512e-05
TCGA-BR-4294-01A-01D-1126-08	44	40	4	32	9.090909e-02	0	coding only	34834024	8	29	2.296605e-07	8.325194e-07
TCGA-BR-4357-01A-01D-1158-08	297	294	3	223	1.010101e-02	0	coding only	34834024	71	221	2.038237e-06	6.344372e-06
TCGA-BR-4361-01A-01D-1158-08	3279	3232	47	2321	1.433364e-02	0	coding only	34834024	903	2296	2.592293e-05	6.591257e-05
TCGA-BR-4362-01A-01D-1158-08	1885	1860	25	1354	1.326260e-02	0	coding only	34834024	502	1339	1.441120e-05	3.843943e-05
TCGA-BR-4363-01A-01D-1158-08	602	595	7	432	1.162791e-02	0	coding only	34834024	161	427	4.621918e-06	1.225813e-05
TCGA-BR-4366-01A-01D-1158-08	174	173	1	127	5.747126e-03	0	coding only	34834024	45	125	1.291840e-06	3.588446e-06
TCGA-BR-4368-01A-01D-1158-08	1495	1473	22	1031	1.471572e-02	0	coding only	34834024	442	1023	1.268874e-05	2.936784e-05
TCGA-BR-4369-01A-01D-1158-08	208	206	2	152	9.615385e-03	0	coding only	34834024	54	150	1.550208e-06	4.306135e-06
TCGA-BR-4370-01A-01D-1158-08	1185	1172	13	827	1.097046e-02	0	coding only	34834024	343	819	9.846695e-06	2.351150e-05
TCGA-BR-4371-01A-01D-1158-08	193	188	5	137	2.590674e-02	0	coding only	34834024	51	134	1.464086e-06	3.846814e-06
TCGA-BR-6452-01A-12D-1800-08	8710	8607	103	6277	1.182549e-02	0	coding only	34834024	2307	6217	6.622835e-05	1.784749e-04
TCGA-BR-6453-01A-11D-1800-08	235	232	3	169	1.276596e-02	0	coding only	34834024	63	164	1.808577e-06	4.708041e-06
TCGA-BR-6454-01A-11D-1800-08	175	173	2	129	1.142857e-02	0	coding only	34834024	44	126	1.263133e-06	3.617153e-06
TCGA-BR-6455-01A-11D-1800-08	118	116	2	76	1.694915e-02	0	coding only	34834024	38	74	1.090887e-06	2.124360e-06
TCGA-BR-6456-01A-11D-1800-08	52	51	1	37	1.923077e-02	0	coding only	34834024	14	36	4.019059e-07	1.033472e-06
TCGA-BR-6457-01A-21D-1800-08	147	146	1	108	6.802721e-03	0	coding only	34834024	37	108	1.062180e-06	3.100417e-06
TCGA-BR-6458-01A-11D-1800-08	351	345	6	256	1.709402e-02	0	coding only	34834024	89	253	2.554973e-06	7.263014e-06
TCGA-BR-6563-01A-13D-2053-08	94	93	1	73	1.063830e-02	0	coding only	34834024	20	71	5.741513e-07	2.038237e-06
TCGA-BR-6564-01A-12D-1882-08	45	43	2	30	4.444444e-02	0	coding only	34834024	12	28	3.444908e-07	8.038118e-07
TCGA-BR-6565-01A-11D-1800-08	172	170	2	135	1.162791e-02	0	coding only	34834024	35	131	1.004765e-06	3.760691e-06
TCGA-BR-6566-01A-11D-1800-08	1070	1059	11	755	1.028037e-02	0	coding only	34834024	299	748	8.583562e-06	2.147326e-05
TCGA-BR-6705-01A-12D-1882-08	128	124	4	96	3.125000e-02	0	coding only	34834024	27	96	7.751042e-07	2.755926e-06
TCGA-BR-6706-01A-11D-1882-08	265	263	2	206	7.547170e-03	0	coding only	34834024	55	205	1.578916e-06	5.885051e-06
TCGA-BR-6707-01A-11D-1882-08	84	83	1	63	1.190476e-02	0	coding only	34834024	19	63	5.454437e-07	1.808577e-06
TCGA-BR-6710-01A-11D-1882-08	1	1	0	0	0	0	coding only	34834024	0	0	0	0
TCGA-BR-6801-01A-11D-1882-08	62	61	1	40	1.612903e-02	0	coding only	34834024	19	40	5.454437e-07	1.148303e-06
TCGA-BR-6802-01A-11D-1882-08	547	540	7	376	1.279707e-02	0	coding only	34834024	163	370	4.679333e-06	1.062180e-05
TCGA-BR-6803-01A-11D-1882-08	24	22	2	18	8.333333e-02	0	coding only	34834024	4	15	1.148303e-07	4.306135e-07
TCGA-BR-6852-01A-11D-1882-08	1253	1232	21	887	1.675978e-02	0	coding only	34834024	340	881	9.760572e-06	2.529136e-05
TCGA-BR-7196-01A-11D-2053-08	85	84	1	61	1.176471e-02	0	coding only	34834024	23	60	6.602740e-07	1.722454e-06
TCGA-BR-7197-01A-11D-2201-08	203	198	5	149	2.463054e-02	0	coding only	34834024	46	144	1.320548e-06	4.133889e-06
TCGA-BR-7703-01A-11D-2053-08	821	809	12	597	1.461632e-02	0	coding only	34834024	211	588	6.057296e-06	1.688005e-05
TCGA-BR-7707-01A-11D-2053-08	1628	1603	25	1162	1.535627e-02	0	coding only	34834024	438	1147	1.257391e-05	3.292758e-05
TCGA-BR-7715-01A-11D-2053-08	166	164	2	126	1.204819e-02	0	coding only	34834024	38	125	1.090887e-06	3.588446e-06
TCGA-BR-7716-01A-21D-2053-08	191	189	2	143	1.047120e-02	0	coding only	34834024	42	141	1.205718e-06	4.047767e-06
TCGA-BR-7717-01A-11D-2053-08	164	163	1	114	6.097561e-03	0	coding only	34834024	49	114	1.406671e-06	3.272662e-06
TCGA-BR-7722-01A-31D-2201-08	62	61	1	47	1.612903e-02	0	coding only	34834024	14	47	4.019059e-07	1.349256e-06
TCGA-BR-7723-01A-11D-2053-08	195	191	4	140	2.051282e-02	0	coding only	34834024	50	136	1.435378e-06	3.904229e-06
TCGA-BR-7851-01A-11D-2201-08	1683	1670	13	1161	7.724302e-03	0	coding only	34834024	504	1143	1.446861e-05	3.281275e-05
TCGA-BR-7901-01A-11D-2201-08	243	243	0	173	0	0	coding only	34834024	70	171	2.009530e-06	4.908994e-06
TCGA-BR-7957-01A-11D-2201-08	61	60	1	48	1.639344e-02	0	coding only	34834024	12	47	3.444908e-07	1.349256e-06
TCGA-BR-8059-01A-11D-2340-08	731	723	8	538	1.094391e-02	0	coding only	34834024	180	533	5.167362e-06	1.530113e-05
TCGA-BR-8077-01A-11D-2340-08	139	133	6	102	4.316547e-02	1	exome+100bp flanks	34834024	29	101	8.325194e-07	2.899464e-06
TCGA-BR-8080-01A-11D-2340-08	176	171	5	135	2.840909e-02	0	coding only	34834024	36	132	1.033472e-06	3.789399e-06
TCGA-BR-8081-01A-11D-2340-08	947	935	12	639	1.267159e-02	0	coding only	34834024	291	632	8.353901e-06	1.814318e-05
TCGA-BR-8284-01A-11D-2340-08	353	347	6	245	1.699717e-02	0	coding only	34834024	101	245	2.899464e-06	7.033353e-06
TCGA-BR-8295-01A-11D-2340-08	57	56	1	40	1.754386e-02	0	coding only	34834024	16	39	4.593210e-07	1.119595e-06
TCGA-BR-8296-01A-11D-2340-08	92	89	3	62	3.260870e-02	0	coding only	34834024	27	61	7.751042e-07	1.751161e-06
TCGA-BR-8360-01A-11D-2340-08	668	659	9	465	1.347305e-02	0	coding only	34834024	190	463	5.454437e-06	1.329160e-05
TCGA-BR-8361-01A-11D-2340-08	1700	1677	23	1226	1.352941e-02	0	coding only	34834024	446	1211	1.280357e-05	3.476486e-05
TCGA-BR-8365-01A-21D-2340-08	27	26	1	21	3.703704e-02	0	coding only	34834024	5	19	1.435378e-07	5.454437e-07
TCGA-BR-8366-01A-11D-2340-08	192	191	1	152	5.208333e-03	0	coding only	34834024	37	148	1.062180e-06	4.248720e-06
TCGA-BR-8367-01A-11D-2340-08	75	72	3	53	4.000000e-02	0	coding only	34834024	18	53	5.167362e-07	1.521501e-06
TCGA-BR-8368-01A-11D-2340-08	1100	1087	13	766	1.181818e-02	0	coding only	34834024	315	762	9.042883e-06	2.187516e-05
TCGA-BR-8370-01A-11D-2340-08	124	121	3	85	2.419355e-02	0	coding only	34834024	35	84	1.004765e-06	2.411435e-06
TCGA-BR-8371-01A-11D-2340-08	23	23	0	15	0	0	coding only	34834024	8	15	2.296605e-07	4.306135e-07
TCGA-BR-8372-01A-11D-2340-08	1396	1372	24	999	1.719198e-02	0	coding only	34834024	372	989	1.067921e-05	2.839178e-05
TCGA-BR-8373-01A-11D-2340-08	113	109	4	70	3.539823e-02	0	coding only	34834024	39	68	1.119595e-06	1.952114e-06
TCGA-BR-8381-01A-11D-2394-08	147	141	6	99	4.081633e-02	1	exome+100bp flanks	34834024	41	99	1.177010e-06	2.842049e-06
TCGA-BR-8382-01A-11D-2394-08	943	933	10	659	1.060445e-02	0	coding only	34834024	268	648	7.693627e-06	1.860250e-05
TCGA-BR-8384-01A-21D-2394-08	48	46	2	39	4.166667e-02	0	coding only	34834024	7	39	2.009530e-07	1.119595e-06
TCGA-BR-8484-01A-11D-2394-08	105	100	5	65	4.761905e-02	1	exome+100bp flanks	34834024	34	61	9.760572e-07	1.751161e-06
TCGA-BR-8485-01A-11D-2394-08	358	352	6	264	1.675978e-02	0	coding only	34834024	88	260	2.526266e-06	7.463967e-06
TCGA-BR-8486-01A-31D-2394-08	61	60	1	47	1.639344e-02	0	coding only	34834024	13	47	3.731983e-07	1.349256e-06
TCGA-BR-8588-01A-11D-2394-08	141	140	1	102	7.092199e-03	0	coding only	34834024	37	100	1.062180e-06	2.870756e-06
TCGA-BR-8589-01A-11D-2394-08	1272	1254	18	994	1.415094e-02	0	coding only	34834024	254	983	7.291721e-06	2.821954e-05
TCGA-BR-8590-01A-11D-2394-08	146	144	2	106	1.369863e-02	0	coding only	34834024	38	104	1.090887e-06	2.985587e-06
TCGA-BR-8591-01A-11D-2394-08	1562	1532	30	1097	1.920615e-02	0	coding only	34834024	433	1075	1.243038e-05	3.086063e-05
TCGA-BR-8676-01A-11D-2394-08	97	94	3	72	3.092784e-02	0	coding only	34834024	22	70	6.315664e-07	2.009530e-06
TCGA-BR-8677-01A-11D-2394-08	80	79	1	55	1.250000e-02	0	coding only	34834024	24	55	6.889816e-07	1.578916e-06
TCGA-BR-8678-01A-11D-2394-08	128	126	2	97	1.562500e-02	0	coding only	34834024	29	95	8.325194e-07	2.727219e-06
TCGA-BR-8679-01A-11D-2394-08	183	180	3	133	1.639344e-02	0	coding only	34834024	46	129	1.320548e-06	3.703276e-06
TCGA-BR-8680-01A-11D-2394-08	6996	6853	143	5353	2.044025e-02	0	coding only	34834024	1474	5273	4.231495e-05	1.513750e-04
TCGA-BR-8682-01A-11D-2394-08	83	80	3	54	3.614458e-02	0	coding only	34834024	24	52	6.889816e-07	1.492793e-06
TCGA-BR-8683-01A-11D-2394-08	172	171	1	128	5.813953e-03	0	coding only	34834024	42	124	1.205718e-06	3.559738e-06
TCGA-BR-8687-01A-11D-2394-08	209	204	5	152	2.392344e-02	0	coding only	34834024	52	149	1.492793e-06	4.277427e-06
TCGA-BR-8690-01A-11D-2394-08	181	176	5	129	2.762431e-02	0	coding only	34834024	47	128	1.349256e-06	3.674568e-06
TCGA-BR-A4IV-01A-31D-A25D-08	29	27	2	20	6.896552e-02	0	coding only	34834024	7	20	2.009530e-07	5.741513e-07
TCGA-BR-A4IY-01A-11D-A25D-08	155	152	3	116	1.935484e-02	0	coding only	34834024	35	115	1.004765e-06	3.301370e-06
TCGA-BR-A4IZ-01A-32D-A25D-08	10	10	0	9	0	0	coding only	34834024	1	9	2.870756e-08	2.583681e-07
TCGA-BR-A4J1-01A-11D-A25D-08	86	80	6	58	6.976744e-02	0	coding only	34834024	21	56	6.028589e-07	1.607624e-06
TCGA-BR-A4J4-01A-12D-A25D-08	91	90	1	72	1.098901e-02	0	coding only	34834024	17	71	4.880286e-07	2.038237e-06
TCGA-BR-A4J6-01A-11D-A25D-08	41	40	1	28	2.439024e-02	0	coding only	34834024	11	27	3.157832e-07	7.751042e-07
TCGA-BR-A4J7-01A-31D-A25D-08	60	58	2	41	3.333333e-02	0	coding only	34834024	17	41	4.880286e-07	1.177010e-06
TCGA-BR-A4J8-01A-11D-A25D-08	118	113	5	70	4.237288e-02	1	exome+100bp flanks	34834024	43	69	1.234425e-06	1.980822e-06
TCGA-BR-A4QI-01A-12D-A25D-08	154	152	2	111	1.298701e-02	0	coding only	34834024	40	109	1.148303e-06	3.129125e-06
TCGA-BR-A4QL-01A-31D-A25D-08	2103	2075	28	1540	1.331431e-02	0	coding only	34834024	529	1519	1.518630e-05	4.360679e-05
TCGA-CD-5798-01A-11D-1600-08	104	102	2	77	1.923077e-02	0	coding only	34834024	25	75	7.176891e-07	2.153067e-06
TCGA-CD-5799-01A-11D-1600-08	61	58	3	38	4.918033e-02	0	coding only	34834024	19	37	5.454437e-07	1.062180e-06
TCGA-CD-5800-01A-11D-1600-08	185	183	2	139	1.081081e-02	0	coding only	34834024	43	136	1.234425e-06	3.904229e-06
TCGA-CD-5801-01A-11D-1600-08	613	606	7	467	1.141925e-02	0	coding only	34834024	138	464	3.961644e-06	1.332031e-05
TCGA-CD-5802-01A-11D-1600-08	58	58	0	44	0	0	coding only	34834024	14	43	4.019059e-07	1.234425e-06
TCGA-CD-5803-01A-11D-1600-08	48	48	0	37	0	0	coding only	34834024	11	35	3.157832e-07	1.004765e-06
TCGA-CD-5804-01A-12D-2053-08	99	98	1	75	1.010101e-02	0	coding only	34834024	23	75	6.602740e-07	2.153067e-06
TCGA-CD-5813-01A-11D-1600-08	208	201	7	153	3.365385e-02	1	exome+100bp flanks	34834024	47	150	1.349256e-06	4.306135e-06
TCGA-CD-8524-01A-11D-2340-08	170	167	3	128	1.764706e-02	0	coding only	34834024	37	126	1.062180e-06	3.617153e-06
TCGA-CD-8525-01A-11D-2340-08	91	87	4	67	4.395604e-02	0	coding only	34834024	19	67	5.454437e-07	1.923407e-06
TCGA-CD-8526-01A-11D-2340-08	50	47	3	41	6.000000e-02	0	coding only	34834024	6	39	1.722454e-07	1.119595e-06
TCGA-CD-8528-01A-11D-2340-08	122	118	4	89	3.278689e-02	0	coding only	34834024	29	89	8.325194e-07	2.554973e-06
TCGA-CD-8529-01A-11D-2340-08	447	443	4	332	8.948546e-03	0	coding only	34834024	110	328	3.157832e-06	9.416081e-06
TCGA-CD-8530-01A-11D-2340-08	106	102	4	72	3.773585e-02	0	coding only	34834024	29	70	8.325194e-07	2.009530e-06
TCGA-CD-8531-01A-11D-2340-08	291	266	25	203	8.591065e-02	1	exome+100bp flanks	34834024	63	198	1.808577e-06	5.684098e-06
TCGA-CD-8532-01A-11D-2340-08	54	51	3	31	5.555556e-02	0	coding only	34834024	19	31	5.454437e-07	8.899345e-07
TCGA-CD-8534-01A-11D-2340-08	87	82	5	64	5.747126e-02	0	coding only	34834024	18	63	5.167362e-07	1.808577e-06
TCGA-CD-8535-01A-11D-2340-08	312	307	5	221	1.602564e-02	0	coding only	34834024	85	214	2.440143e-06	6.143419e-06
TCGA-CD-A4MI-01A-21D-A25D-08	1075	1070	5	757	4.651163e-03	0	coding only	34834024	307	752	8.813222e-06	2.158809e-05
TCGA-CD-A4MJ-01A-11D-A25D-08	721	712	9	530	1.248266e-02	0	coding only	34834024	180	526	5.167362e-06	1.510018e-05
TCGA-CG-4300-01A-01D-1158-08	171	169	2	128	1.169591e-02	0	coding only	34834024	40	124	1.148303e-06	3.559738e-06
TCGA-CG-4301-01A-01D-1158-08	62	61	1	46	1.612903e-02	0	coding only	34834024	15	44	4.306135e-07	1.263133e-06
TCGA-CG-4304-01A-01D-1158-08	83	83	0	53	0	0	coding only	34834024	29	53	8.325194e-07	1.521501e-06
TCGA-CG-4305-01A-01D-1158-08	1228	1217	11	859	8.957655e-03	0	coding only	34834024	352	848	1.010506e-05	2.434401e-05
TCGA-CG-4306-01A-01D-1158-08	1171	1158	13	829	1.110162e-02	0	coding only	34834024	327	820	9.387374e-06	2.354020e-05
TCGA-CG-4436-01A-01D-1158-08	213	210	3	160	1.408451e-02	0	coding only	34834024	50	158	1.435378e-06	4.535795e-06
TCGA-CG-4437-01A-01D-1800-08	592	582	10	444	1.689189e-02	0	coding only	34834024	137	440	3.932936e-06	1.263133e-05
TCGA-CG-4438-01A-01D-1158-08	166	159	7	126	4.216867e-02	1	exome+100bp flanks	34834024	32	124	9.186421e-07	3.559738e-06
TCGA-CG-4440-01A-01D-1158-08	139	138	1	113	7.194245e-03	0	coding only	34834024	25	113	7.176891e-07	3.243955e-06
TCGA-CG-4441-01A-01D-1800-08	143	138	5	98	3.496503e-02	1	exome+100bp flanks	34834024	38	97	1.090887e-06	2.784634e-06
TCGA-CG-4442-01A-01D-1158-08	1791	1763	28	1282	1.563372e-02	0	coding only	34834024	473	1268	1.357868e-05	3.640119e-05
TCGA-CG-4443-01A-01D-1158-08	118	113	5	80	4.237288e-02	1	exome+100bp flanks	34834024	33	80	9.473496e-07	2.296605e-06
TCGA-CG-4444-01A-01D-1158-08	213	212	1	151	4.694836e-03	0	coding only	34834024	61	148	1.751161e-06	4.248720e-06
TCGA-CG-4449-01A-01D-1158-08	121	120	1	94	8.264463e-03	0	coding only	34834024	26	91	7.463967e-07	2.612388e-06
TCGA-CG-4455-01A-01D-1158-08	58	57	1	37	1.724138e-02	0	coding only	34834024	20	37	5.741513e-07	1.062180e-06
TCGA-CG-4462-01A-01D-1158-08	90	89	1	60	1.111111e-02	0	coding only	34834024	29	59	8.325194e-07	1.693746e-06
TCGA-CG-4465-01A-01D-1158-08	688	682	6	498	8.720930e-03	0	coding only	34834024	180	493	5.167362e-06	1.415283e-05
TCGA-CG-4466-01A-01D-1158-08	244	233	11	177	4.508197e-02	1	exome+100bp flanks	34834024	55	174	1.578916e-06	4.995116e-06
TCGA-CG-4469-01A-01D-1158-08	365	360	5	282	1.369863e-02	0	coding only	34834024	76	272	2.181775e-06	7.808458e-06
TCGA-CG-4474-01A-02D-1158-08	112	110	2	82	1.785714e-02	0	coding only	34834024	28	81	8.038118e-07	2.325313e-06
TCGA-CG-4475-01A-01D-1158-08	62	59	3	42	4.838710e-02	0	coding only	34834024	17	42	4.880286e-07	1.205718e-06
TCGA-CG-4476-01A-01D-1158-08	152	149	3	123	1.973684e-02	0	coding only	34834024	26	121	7.463967e-07	3.473615e-06
TCGA-CG-4477-01A-01D-1158-08	79	76	3	55	3.797468e-02	0	coding only	34834024	21	54	6.028589e-07	1.550208e-06
TCGA-CG-5717-01A-11D-1600-08	206	202	4	150	1.941748e-02	0	coding only	34834024	52	150	1.492793e-06	4.306135e-06
TCGA-CG-5718-01A-11D-1600-08	106	103	3	79	2.830189e-02	0	coding only	34834024	24	76	6.889816e-07	2.181775e-06
TCGA-CG-5719-01A-11D-1600-08	111	108	3	78	2.702703e-02	0	coding only	34834024	30	78	8.612269e-07	2.239190e-06
TCGA-CG-5720-01A-11D-1600-08	115	114	1	82	8.695652e-03	0	coding only	34834024	32	82	9.186421e-07	2.354020e-06
TCGA-CG-5721-01A-11D-1600-08	4765	4695	70	3383	1.469045e-02	0	coding only	34834024	1302	3349	3.737725e-05	9.614163e-05
TCGA-CG-5722-01A-21D-1600-08	105	104	1	75	9.523810e-03	0	coding only	34834024	29	74	8.325194e-07	2.124360e-06
TCGA-CG-5723-01A-11D-1600-08	1797	1773	24	1272	1.335559e-02	0	coding only	34834024	496	1258	1.423895e-05	3.611412e-05
TCGA-CG-5724-01A-11D-1600-08	140	136	4	104	2.857143e-02	0	coding only	34834024	32	101	9.186421e-07	2.899464e-06
TCGA-CG-5726-01A-11D-1600-08	1583	1566	17	1126	1.073910e-02	0	coding only	34834024	432	1115	1.240167e-05	3.200893e-05
TCGA-CG-5727-01A-11D-1600-08	185	182	3	128	1.621622e-02	0	coding only	34834024	54	127	1.550208e-06	3.645861e-06
TCGA-CG-5728-01A-11D-1600-08	1452	1435	17	999	1.170799e-02	0	coding only	34834024	433	994	1.243038e-05	2.853532e-05
TCGA-CG-5730-01A-11D-1600-08	201	196	5	135	2.487562e-02	0	coding only	34834024	61	135	1.751161e-06	3.875521e-06
TCGA-CG-5732-01A-11D-1600-08	82	82	0	58	0	0	coding only	34834024	24	58	6.889816e-07	1.665039e-06
TCGA-CG-5733-01A-11D-1600-08	1249	1235	14	885	1.120897e-02	0	coding only	34834024	350	872	1.004765e-05	2.503300e-05
TCGA-CG-5734-01A-11D-1600-08	127	124	3	94	2.362205e-02	0	coding only	34834024	29	94	8.325194e-07	2.698511e-06
TCGA-D7-5577-01A-01D-1600-08	138	136	2	107	1.449275e-02	0	coding only	34834024	29	106	8.325194e-07	3.043002e-06
TCGA-D7-5578-01A-01D-1600-08	300	293	7	209	2.333333e-02	0	coding only	34834024	83	207	2.382728e-06	5.942466e-06
TCGA-D7-5579-01A-01D-1600-08	179	175	4	131	2.234637e-02	0	coding only	34834024	42	130	1.205718e-06	3.731983e-06
TCGA-D7-6518-01A-11D-1800-08	116	114	2	81	1.724138e-02	0	coding only	34834024	33	80	9.473496e-07	2.296605e-06
TCGA-D7-6519-01A-11D-1800-08	65	64	1	50	1.538462e-02	0	coding only	34834024	14	50	4.019059e-07	1.435378e-06
TCGA-D7-6520-01A-11D-1800-08	76	74	2	53	2.631579e-02	0	coding only	34834024	19	53	5.454437e-07	1.521501e-06
TCGA-D7-6521-01A-11D-1800-08	98	97	1	76	1.020408e-02	0	coding only	34834024	21	75	6.028589e-07	2.153067e-06
TCGA-D7-6522-01A-11D-1800-08	91	86	5	62	5.494505e-02	0	coding only	34834024	23	62	6.602740e-07	1.779869e-06
TCGA-D7-6524-01A-11D-1800-08	126	125	1	93	7.936508e-03	0	coding only	34834024	31	91	8.899345e-07	2.612388e-06
TCGA-D7-6525-01A-11D-1800-08	202	193	9	138	4.455446e-02	1	exome+100bp flanks	34834024	53	133	1.521501e-06	3.818106e-06
TCGA-D7-6526-01A-11D-1800-08	254	251	3	180	1.181102e-02	0	coding only	34834024	70	176	2.009530e-06	5.052531e-06
TCGA-D7-6527-01A-11D-1800-08	262	257	5	198	1.908397e-02	0	coding only	34834024	57	197	1.636331e-06	5.655390e-06
TCGA-D7-6528-01A-11D-1800-08	403	396	7	304	1.736973e-02	0	coding only	34834024	90	301	2.583681e-06	8.640977e-06
TCGA-D7-6815-01A-11D-1882-08	175	170	5	117	2.857143e-02	0	coding only	34834024	51	115	1.464086e-06	3.301370e-06
TCGA-D7-6817-01A-11D-1882-08	111	106	5	82	4.504505e-02	1	exome+100bp flanks	34834024	23	82	6.602740e-07	2.354020e-06
TCGA-D7-6818-01A-11D-1882-08	183	176	7	146	3.825137e-02	1	exome+100bp flanks	34834024	30	144	8.612269e-07	4.133889e-06
TCGA-D7-6820-01A-11D-1882-08	117	114	3	81	2.564103e-02	0	coding only	34834024	33	79	9.473496e-07	2.267898e-06
TCGA-D7-6822-01A-11D-1882-08	289	281	8	230	2.768166e-02	0	coding only	34834024	50	227	1.435378e-06	6.516617e-06
TCGA-D7-8570-01A-11D-2340-08	141	136	5	99	3.546099e-02	1	exome+100bp flanks	34834024	35	97	1.004765e-06	2.784634e-06
TCGA-D7-8572-01A-11D-2340-08	199	196	3	146	1.507538e-02	0	coding only	34834024	48	143	1.377963e-06	4.105182e-06
TCGA-D7-8573-01A-11D-2340-08	97	95	2	68	2.061856e-02	0	coding only	34834024	25	68	7.176891e-07	1.952114e-06
TCGA-D7-8574-01A-13D-2340-08	39	35	4	22	1.025641e-01	0	coding only	34834024	12	21	3.444908e-07	6.028589e-07
TCGA-D7-8576-01A-11D-2340-08	70	69	1	49	1.428571e-02	0	coding only	34834024	19	48	5.454437e-07	1.377963e-06
TCGA-D7-A4YT-01A-11D-A25D-08	324	320	4	229	1.234568e-02	0	coding only	34834024	91	225	2.612388e-06	6.459202e-06
TCGA-D7-A4YU-01A-21D-A25D-08	269	263	6	215	2.230483e-02	0	coding only	34834024	48	208	1.377963e-06	5.971173e-06
TCGA-D7-A4YV-01A-11D-A25D-08	949	940	9	675	9.483667e-03	0	coding only	34834024	260	666	7.463967e-06	1.911924e-05
TCGA-D7-A4Z0-01A-22D-A25D-08	346	339	7	267	2.023121e-02	0	coding only	34834024	68	262	1.952114e-06	7.521382e-06
TCGA-EQ-5647-01A-01D-1600-08	109	107	2	76	1.834862e-02	0	coding only	34834024	31	75	8.899345e-07	2.153067e-06
TCGA-F1-6177-01A-11D-1800-08	1499	1479	20	1083	1.334223e-02	0	coding only	34834024	395	1071	1.133949e-05	3.074580e-05
TCGA-F1-6874-01A-11D-1882-08	972	959	13	682	1.337449e-02	0	coding only	34834024	272	675	7.808458e-06	1.937761e-05
TCGA-F1-6875-01A-11D-2053-08	122	117	5	86	4.098361e-02	1	exome+100bp flanks	34834024	28	81	8.038118e-07	2.325313e-06
TCGA-FP-7735-01A-11D-2053-08	77	75	2	57	2.597403e-02	0	coding only	34834024	18	57	5.167362e-07	1.636331e-06
TCGA-FP-7829-01A-11D-2053-08	284	281	3	205	1.056338e-02	0	coding only	34834024	75	204	2.153067e-06	5.856343e-06
TCGA-FP-7916-01A-11D-2201-08	127	121	6	88	4.724409e-02	1	exome+100bp flanks	34834024	33	86	9.473496e-07	2.468851e-06
TCGA-FP-7998-01A-11D-2201-08	84	83	1	63	1.190476e-02	0	coding only	34834024	20	61	5.741513e-07	1.751161e-06
TCGA-FP-8099-01A-11D-2340-08	156	154	2	108	1.282051e-02	0	coding only	34834024	46	106	1.320548e-06	3.043002e-06
TCGA-FP-8209-01A-11D-2340-08	2	2	0	1	0	0	coding only	34834024	1	0	2.870756e-08	0
TCGA-HF-7132-01A-11D-2053-08	1344	1331	13	939	9.672619e-03	0	coding only	34834024	388	925	1.113854e-05	2.655450e-05
TCGA-HF-7133-01A-11D-2053-08	91	88	3	69	3.296703e-02	0	coding only	34834024	19	67	5.454437e-07	1.923407e-06
TCGA-HF-7136-01A-11D-2053-08	101	96	5	73	4.950495e-02	1	exome+100bp flanks	34834024	22	71	6.315664e-07	2.038237e-06
TCGA-HJ-7597-01A-21D-2201-08	876	870	6	604	6.849315e-03	0	coding only	34834024	266	601	7.636212e-06	1.725325e-05
TCGA-HU-8243-01A-11D-2340-08	140	137	3	100	2.142857e-02	0	coding only	34834024	37	98	1.062180e-06	2.813341e-06
TCGA-HU-8245-01A-11D-2340-08	73	72	1	56	1.369863e-02	0	coding only	34834024	16	53	4.593210e-07	1.521501e-06
TCGA-HU-8604-01A-11D-2394-08	238	236	2	171	8.403361e-03	0	coding only	34834024	65	169	1.865992e-06	4.851578e-06
TCGA-HU-8610-01A-22D-2394-08	75	70	5	56	6.666667e-02	0	coding only	34834024	14	54	4.019059e-07	1.550208e-06
TCGA-HU-A4G2-01A-11D-A25D-08	58	55	3	38	5.172414e-02	0	coding only	34834024	17	38	4.880286e-07	1.090887e-06
TCGA-HU-A4GD-01A-11D-A25D-08	106	98	8	73	7.547170e-02	1	exome+100bp flanks	34834024	24	71	6.889816e-07	2.038237e-06
TCGA-HU-A4GN-01A-11D-A25D-08	1284	1267	17	889	1.323988e-02	0	coding only	34834024	373	878	1.070792e-05	2.520524e-05
TCGA-HU-A4GP-01A-11D-A25D-08	217	213	4	148	1.843318e-02	0	coding only	34834024	64	145	1.837284e-06	4.162597e-06
TCGA-HU-A4GQ-01A-11D-A25D-08	1971	1939	32	1379	1.623541e-02	0	coding only	34834024	558	1361	1.601882e-05	3.907100e-05
TCGA-HU-A4GU-01A-11D-A25D-08	1671	1650	21	1173	1.256732e-02	0	coding only	34834024	475	1154	1.363609e-05	3.312853e-05
TCGA-HU-A4H3-01A-21D-A25D-08	1007	990	17	723	1.688183e-02	0	coding only	34834024	262	716	7.521382e-06	2.055462e-05
TCGA-HU-A4H4-01A-21D-A25D-08	774	768	6	552	7.751938e-03	0	coding only	34834024	213	543	6.114711e-06	1.558821e-05
TCGA-HU-A4H5-01A-21D-A25D-08	300	293	7	232	2.333333e-02	0	coding only	34834024	60	227	1.722454e-06	6.516617e-06
TCGA-HU-A4H6-01A-11D-A25D-08	112	110	2	79	1.785714e-02	0	coding only	34834024	31	76	8.899345e-07	2.181775e-06
TCGA-IN-7806-01A-11D-2053-08	87	86	1	66	1.149425e-02	0	coding only	34834024	20	65	5.741513e-07	1.865992e-06
TCGA-IN-7808-01A-11D-2201-08	124	124	0	95	0	0	coding only	34834024	28	95	8.038118e-07	2.727219e-06
TCGA-IN-8462-01A-11D-2340-08	136	133	3	99	2.205882e-02	0	coding only	34834024	34	99	9.760572e-07	2.842049e-06
TCGA-IN-8663-01A-11D-2394-08	199	198	1	149	5.025126e-03	0	coding only	34834024	49	142	1.406671e-06	4.076474e-06
TCGA-IP-7968-01A-11D-2201-08	132	126	6	98	4.545455e-02	1	exome+100bp flanks	34834024	28	98	8.038118e-07	2.813341e-06