This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and molecular subtypes.
Testing the association between copy number variation 57 arm-level events and 10 molecular subtypes across 494 patients, 166 significant findings detected with P value < 0.05 and Q value < 0.25.
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1q gain cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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3p gain cnv correlated to 'CN_CNMF'.
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4p gain cnv correlated to 'CN_CNMF'.
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4q gain cnv correlated to 'CN_CNMF'.
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5p gain cnv correlated to 'CN_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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5q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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7p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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7q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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8p gain cnv correlated to 'CN_CNMF'.
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8q gain cnv correlated to 'CN_CNMF'.
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11p gain cnv correlated to 'CN_CNMF'.
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11q gain cnv correlated to 'CN_CNMF'.
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12p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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12q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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13q gain cnv correlated to 'CN_CNMF'.
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14q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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18p gain cnv correlated to 'CN_CNMF'.
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18q gain cnv correlated to 'CN_CNMF'.
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19p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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19q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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20p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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20q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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21q gain cnv correlated to 'CN_CNMF'.
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xq gain cnv correlated to 'CN_CNMF'.
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1p loss cnv correlated to 'CN_CNMF'.
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1q loss cnv correlated to 'CN_CNMF'.
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2p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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2q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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3p loss cnv correlated to 'CN_CNMF'.
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3q loss cnv correlated to 'CN_CNMF'.
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6q loss cnv correlated to 'CN_CNMF'.
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8p loss cnv correlated to 'CN_CNMF'.
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8q loss cnv correlated to 'CN_CNMF'.
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9p loss cnv correlated to 'CN_CNMF'.
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9q loss cnv correlated to 'CN_CNMF'.
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10p loss cnv correlated to 'CN_CNMF'.
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10q loss cnv correlated to 'CN_CNMF'.
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11p loss cnv correlated to 'CN_CNMF'.
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11q loss cnv correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.
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15q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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18p loss cnv correlated to 'CN_CNMF'.
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18q loss cnv correlated to 'CN_CNMF'.
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21q loss cnv correlated to 'CN_CNMF'.
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22q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
5q gain | 17 (3%) | 477 |
1e-05 (0.00534) |
7e-05 (0.0297) |
0.849 (1.00) |
0.079 (1.00) |
0.00023 (0.0911) |
0.00022 (0.088) |
0.0004 (0.151) |
1e-05 (0.00534) |
7e-05 (0.0297) |
3e-05 (0.0136) |
7q gain | 20 (4%) | 474 |
1e-05 (0.00534) |
2e-05 (0.00938) |
0.573 (1.00) |
0.0137 (1.00) |
6e-05 (0.0257) |
6e-05 (0.0257) |
0.00013 (0.0533) |
2e-05 (0.00938) |
5e-05 (0.0218) |
2e-05 (0.00938) |
12p gain | 14 (3%) | 480 |
1e-05 (0.00534) |
1e-05 (0.00534) |
0.852 (1.00) |
0.0797 (1.00) |
3e-05 (0.0136) |
1e-05 (0.00534) |
5e-05 (0.0218) |
2e-05 (0.00938) |
3e-05 (0.0136) |
3e-05 (0.0136) |
12q gain | 15 (3%) | 479 |
1e-05 (0.00534) |
1e-05 (0.00534) |
0.85 (1.00) |
0.0801 (1.00) |
1e-05 (0.00534) |
4e-05 (0.0176) |
1e-05 (0.00534) |
1e-05 (0.00534) |
2e-05 (0.00938) |
1e-05 (0.00534) |
16p gain | 15 (3%) | 479 |
1e-05 (0.00534) |
3e-05 (0.0136) |
0.632 (1.00) |
0.0785 (1.00) |
0.00011 (0.0455) |
0.00029 (0.113) |
0.00013 (0.0533) |
0.00037 (0.141) |
4e-05 (0.0176) |
3e-05 (0.0136) |
17p gain | 16 (3%) | 478 |
1e-05 (0.00534) |
1e-05 (0.00534) |
0.538 (1.00) |
0.0279 (1.00) |
2e-05 (0.00938) |
1e-05 (0.00534) |
1e-05 (0.00534) |
1e-05 (0.00534) |
1e-05 (0.00534) |
1e-05 (0.00534) |
17q gain | 18 (4%) | 476 |
1e-05 (0.00534) |
1e-05 (0.00534) |
0.631 (1.00) |
0.0157 (1.00) |
3e-05 (0.0136) |
1e-05 (0.00534) |
3e-05 (0.0136) |
1e-05 (0.00534) |
1e-05 (0.00534) |
1e-05 (0.00534) |
19p gain | 8 (2%) | 486 |
1e-05 (0.00534) |
0.00021 (0.0844) |
0.00063 (0.232) |
0.00014 (0.057) |
0.0001 (0.0416) |
1e-05 (0.00534) |
0.0003 (0.116) |
4e-05 (0.0176) |
||
19q gain | 10 (2%) | 484 |
1e-05 (0.00534) |
2e-05 (0.00938) |
0.637 (1.00) |
0.0637 (1.00) |
0.00012 (0.0494) |
3e-05 (0.0136) |
1e-05 (0.00534) |
1e-05 (0.00534) |
5e-05 (0.0218) |
1e-05 (0.00534) |
2p loss | 10 (2%) | 484 |
1e-05 (0.00534) |
3e-05 (0.0136) |
0.771 (1.00) |
0.0906 (1.00) |
8e-05 (0.0337) |
2e-05 (0.00938) |
1e-05 (0.00534) |
1e-05 (0.00534) |
6e-05 (0.0257) |
1e-05 (0.00534) |
2q loss | 10 (2%) | 484 |
1e-05 (0.00534) |
1e-05 (0.00534) |
0.774 (1.00) |
0.0901 (1.00) |
8e-05 (0.0337) |
1e-05 (0.00534) |
2e-05 (0.00938) |
1e-05 (0.00534) |
5e-05 (0.0218) |
1e-05 (0.00534) |
15q loss | 8 (2%) | 486 |
0.0001 (0.0416) |
0.00016 (0.065) |
0.193 (1.00) |
0.0887 (1.00) |
0.00045 (0.169) |
0.00016 (0.065) |
9e-05 (0.0377) |
1e-05 (0.00534) |
0.00022 (0.088) |
5e-05 (0.0218) |
7p gain | 18 (4%) | 476 |
1e-05 (0.00534) |
9e-05 (0.0377) |
0.66 (1.00) |
0.0512 (1.00) |
0.00056 (0.208) |
0.00061 (0.226) |
0.00108 (0.388) |
2e-05 (0.00938) |
0.00026 (0.102) |
0.00012 (0.0494) |
14q gain | 11 (2%) | 483 |
1e-05 (0.00534) |
0.00023 (0.0911) |
1 (1.00) |
0.158 (1.00) |
0.00049 (0.183) |
9e-05 (0.0377) |
0.00045 (0.169) |
7e-05 (0.0297) |
0.00092 (0.334) |
0.00013 (0.0533) |
22q loss | 86 (17%) | 408 |
1e-05 (0.00534) |
3e-05 (0.0136) |
0.118 (1.00) |
0.502 (1.00) |
1e-05 (0.00534) |
1e-05 (0.00534) |
0.00088 (0.32) |
0.00018 (0.0725) |
1e-05 (0.00534) |
2e-05 (0.00938) |
16q gain | 13 (3%) | 481 |
1e-05 (0.00534) |
0.00011 (0.0455) |
0.795 (1.00) |
0.277 (1.00) |
0.00109 (0.39) |
0.00213 (0.731) |
0.00167 (0.584) |
0.00021 (0.0844) |
0.00022 (0.088) |
0.00053 (0.197) |
20p gain | 12 (2%) | 482 |
1e-05 (0.00534) |
0.00025 (0.0985) |
0.794 (1.00) |
0.0925 (1.00) |
0.00304 (1.00) |
0.00042 (0.158) |
0.00444 (1.00) |
0.00044 (0.165) |
0.00038 (0.145) |
0.00177 (0.618) |
20q gain | 12 (2%) | 482 |
1e-05 (0.00534) |
0.00033 (0.127) |
0.793 (1.00) |
0.0912 (1.00) |
0.00291 (0.972) |
0.00039 (0.148) |
0.00403 (1.00) |
0.00039 (0.148) |
0.00036 (0.138) |
0.002 (0.692) |
5p gain | 21 (4%) | 473 |
1e-05 (0.00534) |
0.00199 (0.691) |
0.53 (1.00) |
0.234 (1.00) |
0.00583 (1.00) |
0.00071 (0.261) |
0.00376 (1.00) |
1e-05 (0.00534) |
0.001 (0.36) |
5e-05 (0.0218) |
1q gain | 24 (5%) | 470 |
4e-05 (0.0176) |
0.0286 (1.00) |
0.00113 (0.401) |
0.0547 (1.00) |
0.0007 (0.258) |
2e-05 (0.00938) |
0.156 (1.00) |
0.0792 (1.00) |
0.0887 (1.00) |
0.00099 (0.357) |
11q loss | 9 (2%) | 485 |
1e-05 (0.00534) |
0.0168 (1.00) |
0.321 (1.00) |
0.814 (1.00) |
0.0173 (1.00) |
0.015 (1.00) |
0.00032 (0.124) |
0.00248 (0.843) |
0.00131 (0.462) |
0.00682 (1.00) |
3p gain | 3 (1%) | 491 |
0.00029 (0.113) |
0.552 (1.00) |
0.486 (1.00) |
0.336 (1.00) |
0.208 (1.00) |
0.117 (1.00) |
0.325 (1.00) |
0.214 (1.00) |
||
4p gain | 5 (1%) | 489 |
1e-05 (0.00534) |
0.00414 (1.00) |
0.0185 (1.00) |
0.00857 (1.00) |
0.0265 (1.00) |
0.0114 (1.00) |
0.0687 (1.00) |
0.029 (1.00) |
||
4q gain | 5 (1%) | 489 |
1e-05 (0.00534) |
0.00444 (1.00) |
0.0182 (1.00) |
0.00841 (1.00) |
0.0254 (1.00) |
0.0115 (1.00) |
0.0693 (1.00) |
0.0291 (1.00) |
||
8p gain | 6 (1%) | 488 |
0.00033 (0.127) |
0.423 (1.00) |
0.459 (1.00) |
0.63 (1.00) |
0.625 (1.00) |
0.286 (1.00) |
0.526 (1.00) |
0.445 (1.00) |
0.333 (1.00) |
0.467 (1.00) |
8q gain | 7 (1%) | 487 |
3e-05 (0.0136) |
0.203 (1.00) |
0.458 (1.00) |
0.629 (1.00) |
0.869 (1.00) |
0.329 (1.00) |
0.8 (1.00) |
0.558 (1.00) |
0.319 (1.00) |
0.302 (1.00) |
11p gain | 6 (1%) | 488 |
0.00022 (0.088) |
0.0204 (1.00) |
0.782 (1.00) |
0.298 (1.00) |
0.0532 (1.00) |
0.0187 (1.00) |
0.0141 (1.00) |
0.00615 (1.00) |
0.00239 (0.817) |
0.0196 (1.00) |
11q gain | 5 (1%) | 489 |
1e-05 (0.00534) |
0.0592 (1.00) |
0.782 (1.00) |
0.302 (1.00) |
0.116 (1.00) |
0.0597 (1.00) |
0.0423 (1.00) |
0.0195 (1.00) |
0.00722 (1.00) |
0.0644 (1.00) |
13q gain | 5 (1%) | 489 |
1e-05 (0.00534) |
0.0191 (1.00) |
0.383 (1.00) |
0.215 (1.00) |
0.0443 (1.00) |
0.113 (1.00) |
0.168 (1.00) |
0.0629 (1.00) |
0.211 (1.00) |
0.0564 (1.00) |
18p gain | 6 (1%) | 488 |
2e-05 (0.00938) |
0.0916 (1.00) |
0.108 (1.00) |
0.191 (1.00) |
0.256 (1.00) |
0.0848 (1.00) |
0.0262 (1.00) |
0.163 (1.00) |
||
18q gain | 6 (1%) | 488 |
2e-05 (0.00938) |
0.0936 (1.00) |
0.108 (1.00) |
0.191 (1.00) |
0.256 (1.00) |
0.0812 (1.00) |
0.026 (1.00) |
0.162 (1.00) |
||
21q gain | 5 (1%) | 489 |
3e-05 (0.0136) |
0.172 (1.00) |
0.218 (1.00) |
0.374 (1.00) |
0.45 (1.00) |
0.223 (1.00) |
0.07 (1.00) |
0.366 (1.00) |
||
xq gain | 9 (2%) | 485 |
2e-05 (0.00938) |
0.0111 (1.00) |
0.84 (1.00) |
0.505 (1.00) |
0.0959 (1.00) |
0.347 (1.00) |
0.337 (1.00) |
0.176 (1.00) |
0.484 (1.00) |
0.296 (1.00) |
1p loss | 4 (1%) | 490 |
2e-05 (0.00938) |
0.187 (1.00) |
0.236 (1.00) |
0.28 (1.00) |
0.0746 (1.00) |
0.0377 (1.00) |
0.128 (1.00) |
0.0733 (1.00) |
||
1q loss | 3 (1%) | 491 |
0.00036 (0.138) |
0.0492 (1.00) |
0.0972 (1.00) |
0.111 (1.00) |
0.0273 (1.00) |
0.0158 (1.00) |
0.0703 (1.00) |
0.0292 (1.00) |
||
3p loss | 3 (1%) | 491 |
0.00026 (0.102) |
0.0491 (1.00) |
0.0956 (1.00) |
0.109 (1.00) |
0.0278 (1.00) |
0.0165 (1.00) |
0.0711 (1.00) |
0.0292 (1.00) |
||
3q loss | 4 (1%) | 490 |
1e-05 (0.00534) |
0.0185 (1.00) |
0.495 (1.00) |
0.42 (1.00) |
0.0428 (1.00) |
0.0369 (1.00) |
0.0079 (1.00) |
0.00397 (1.00) |
0.0222 (1.00) |
0.00986 (1.00) |
6q loss | 7 (1%) | 487 |
6e-05 (0.0257) |
0.00209 (0.719) |
0.0133 (1.00) |
0.573 (1.00) |
0.0317 (1.00) |
0.0134 (1.00) |
0.00287 (0.961) |
0.00094 (0.34) |
0.00948 (1.00) |
0.00183 (0.637) |
8p loss | 4 (1%) | 490 |
5e-05 (0.0218) |
0.0179 (1.00) |
0.0433 (1.00) |
0.0383 (1.00) |
0.00817 (1.00) |
0.00411 (1.00) |
0.0229 (1.00) |
0.0099 (1.00) |
||
8q loss | 4 (1%) | 490 |
1e-05 (0.00534) |
0.0181 (1.00) |
0.0429 (1.00) |
0.0375 (1.00) |
0.00828 (1.00) |
0.00419 (1.00) |
0.0229 (1.00) |
0.00974 (1.00) |
||
9p loss | 19 (4%) | 475 |
1e-05 (0.00534) |
0.0364 (1.00) |
0.243 (1.00) |
0.646 (1.00) |
0.0283 (1.00) |
0.0428 (1.00) |
0.00534 (1.00) |
0.00309 (1.00) |
0.00945 (1.00) |
0.00111 (0.395) |
9q loss | 24 (5%) | 470 |
1e-05 (0.00534) |
0.0568 (1.00) |
0.172 (1.00) |
0.114 (1.00) |
0.105 (1.00) |
0.0403 (1.00) |
0.0093 (1.00) |
0.00444 (1.00) |
0.0125 (1.00) |
0.00273 (0.917) |
10p loss | 7 (1%) | 487 |
1e-05 (0.00534) |
0.011 (1.00) |
0.494 (1.00) |
0.42 (1.00) |
0.0218 (1.00) |
0.0103 (1.00) |
0.00323 (1.00) |
0.0011 (0.393) |
0.00996 (1.00) |
0.00291 (0.972) |
10q loss | 6 (1%) | 488 |
1e-05 (0.00534) |
0.0192 (1.00) |
0.0529 (1.00) |
0.0357 (1.00) |
0.00914 (1.00) |
0.00345 (1.00) |
0.027 (1.00) |
0.00829 (1.00) |
||
11p loss | 7 (1%) | 487 |
1e-05 (0.00534) |
0.0114 (1.00) |
0.493 (1.00) |
0.959 (1.00) |
0.00681 (1.00) |
0.0138 (1.00) |
0.00311 (1.00) |
0.00125 (0.442) |
0.0106 (1.00) |
0.00313 (1.00) |
18p loss | 4 (1%) | 490 |
0.00029 (0.113) |
0.187 (1.00) |
1 (1.00) |
0.387 (1.00) |
0.238 (1.00) |
0.161 (1.00) |
0.113 (1.00) |
0.0639 (1.00) |
0.0226 (1.00) |
0.209 (1.00) |
18q loss | 4 (1%) | 490 |
0.00017 (0.0687) |
0.185 (1.00) |
1 (1.00) |
0.387 (1.00) |
0.236 (1.00) |
0.161 (1.00) |
0.115 (1.00) |
0.0629 (1.00) |
0.0224 (1.00) |
0.209 (1.00) |
21q loss | 8 (2%) | 486 |
6e-05 (0.0257) |
0.141 (1.00) |
0.383 (1.00) |
0.213 (1.00) |
0.652 (1.00) |
0.575 (1.00) |
0.0752 (1.00) |
0.141 (1.00) |
0.0983 (1.00) |
0.00805 (1.00) |
1p gain | 3 (1%) | 491 |
0.255 (1.00) |
0.394 (1.00) |
0.559 (1.00) |
0.586 (1.00) |
0.413 (1.00) |
0.348 (1.00) |
0.214 (1.00) |
0.264 (1.00) |
||
9p gain | 3 (1%) | 491 |
0.00245 (0.835) |
0.548 (1.00) |
0.486 (1.00) |
0.34 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
||
9q gain | 4 (1%) | 490 |
0.00973 (1.00) |
0.794 (1.00) |
0.896 (1.00) |
0.124 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
||
6p loss | 4 (1%) | 490 |
0.00267 (0.9) |
0.0452 (1.00) |
0.452 (1.00) |
0.338 (1.00) |
0.0764 (1.00) |
0.0367 (1.00) |
0.128 (1.00) |
0.0605 (1.00) |
||
13q loss | 14 (3%) | 480 |
0.00864 (1.00) |
0.0147 (1.00) |
0.0616 (1.00) |
0.137 (1.00) |
0.00494 (1.00) |
0.00438 (1.00) |
0.00145 (0.51) |
0.00083 (0.304) |
0.00201 (0.693) |
0.00778 (1.00) |
17p loss | 8 (2%) | 486 |
0.00165 (0.579) |
0.419 (1.00) |
1 (1.00) |
0.389 (1.00) |
0.653 (1.00) |
0.645 (1.00) |
0.329 (1.00) |
0.141 (1.00) |
0.671 (1.00) |
0.192 (1.00) |
17q loss | 4 (1%) | 490 |
0.0541 (1.00) |
0.792 (1.00) |
0.897 (1.00) |
0.636 (1.00) |
0.398 (1.00) |
0.572 (1.00) |
0.847 (1.00) |
0.762 (1.00) |
||
19p loss | 5 (1%) | 489 |
0.0254 (1.00) |
0.00424 (1.00) |
0.321 (1.00) |
0.237 (1.00) |
0.0178 (1.00) |
0.00826 (1.00) |
0.00262 (0.888) |
0.00087 (0.318) |
0.00752 (1.00) |
0.00264 (0.892) |
xq loss | 3 (1%) | 491 |
0.0219 (1.00) |
0.0498 (1.00) |
0.278 (1.00) |
0.198 (1.00) |
0.0965 (1.00) |
0.111 (1.00) |
0.0279 (1.00) |
0.0157 (1.00) |
0.0686 (1.00) |
0.0287 (1.00) |
P value = 4e-05 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
1Q GAIN MUTATED | 9 | 14 | 1 |
1Q GAIN WILD-TYPE | 25 | 369 | 76 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 126 | 100 | 73 | 115 | 78 |
1Q GAIN MUTATED | 2 | 0 | 2 | 16 | 4 |
1Q GAIN WILD-TYPE | 124 | 100 | 71 | 99 | 74 |
P value = 0.00029 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
3P GAIN MUTATED | 3 | 0 | 0 |
3P GAIN WILD-TYPE | 31 | 383 | 77 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
4P GAIN MUTATED | 5 | 0 | 0 |
4P GAIN WILD-TYPE | 29 | 383 | 77 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
4Q GAIN MUTATED | 5 | 0 | 0 |
4Q GAIN WILD-TYPE | 29 | 383 | 77 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
5P GAIN MUTATED | 19 | 2 | 0 |
5P GAIN WILD-TYPE | 15 | 381 | 77 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 205 | 163 |
5P GAIN MUTATED | 13 | 1 | 7 |
5P GAIN WILD-TYPE | 112 | 204 | 156 |
P value = 5e-05 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 123 | 187 | 105 | 78 |
5P GAIN MUTATED | 13 | 1 | 2 | 5 |
5P GAIN WILD-TYPE | 110 | 186 | 103 | 73 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
5Q GAIN MUTATED | 17 | 0 | 0 |
5Q GAIN WILD-TYPE | 17 | 383 | 77 |
P value = 7e-05 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 151 | 70 |
5Q GAIN MUTATED | 2 | 14 | 1 |
5Q GAIN WILD-TYPE | 271 | 137 | 69 |
P value = 0.00023 (Fisher's exact test), Q value = 0.091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 154 | 55 | 116 | 167 |
5Q GAIN MUTATED | 14 | 0 | 1 | 2 |
5Q GAIN WILD-TYPE | 140 | 55 | 115 | 165 |
P value = 0.00022 (Fisher's exact test), Q value = 0.088
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 126 | 100 | 73 | 115 | 78 |
5Q GAIN MUTATED | 13 | 1 | 1 | 2 | 0 |
5Q GAIN WILD-TYPE | 113 | 99 | 72 | 113 | 78 |
P value = 4e-04 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 150 | 173 | 170 |
5Q GAIN MUTATED | 13 | 2 | 2 |
5Q GAIN WILD-TYPE | 137 | 171 | 168 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 205 | 163 |
5Q GAIN MUTATED | 13 | 1 | 3 |
5Q GAIN WILD-TYPE | 112 | 204 | 160 |
P value = 7e-05 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 169 | 161 |
5Q GAIN MUTATED | 14 | 1 | 2 |
5Q GAIN WILD-TYPE | 149 | 168 | 159 |
P value = 3e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 123 | 187 | 105 | 78 |
5Q GAIN MUTATED | 13 | 1 | 1 | 2 |
5Q GAIN WILD-TYPE | 110 | 186 | 104 | 76 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
7P GAIN MUTATED | 18 | 0 | 0 |
7P GAIN WILD-TYPE | 16 | 383 | 77 |
P value = 9e-05 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 151 | 70 |
7P GAIN MUTATED | 2 | 14 | 2 |
7P GAIN WILD-TYPE | 271 | 137 | 68 |
P value = 0.00056 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 154 | 55 | 116 | 167 |
7P GAIN MUTATED | 14 | 1 | 1 | 2 |
7P GAIN WILD-TYPE | 140 | 54 | 115 | 165 |
P value = 0.00061 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 126 | 100 | 73 | 115 | 78 |
7P GAIN MUTATED | 13 | 2 | 1 | 2 | 0 |
7P GAIN WILD-TYPE | 113 | 98 | 72 | 113 | 78 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 205 | 163 |
7P GAIN MUTATED | 13 | 1 | 4 |
7P GAIN WILD-TYPE | 112 | 204 | 159 |
P value = 0.00026 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 169 | 161 |
7P GAIN MUTATED | 14 | 1 | 3 |
7P GAIN WILD-TYPE | 149 | 168 | 158 |
P value = 0.00012 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 123 | 187 | 105 | 78 |
7P GAIN MUTATED | 13 | 1 | 2 | 2 |
7P GAIN WILD-TYPE | 110 | 186 | 103 | 76 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
7Q GAIN MUTATED | 19 | 0 | 1 |
7Q GAIN WILD-TYPE | 15 | 383 | 76 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 151 | 70 |
7Q GAIN MUTATED | 2 | 16 | 2 |
7Q GAIN WILD-TYPE | 271 | 135 | 68 |
P value = 6e-05 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 154 | 55 | 116 | 167 |
7Q GAIN MUTATED | 16 | 1 | 1 | 2 |
7Q GAIN WILD-TYPE | 138 | 54 | 115 | 165 |
P value = 6e-05 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 126 | 100 | 73 | 115 | 78 |
7Q GAIN MUTATED | 15 | 2 | 1 | 2 | 0 |
7Q GAIN WILD-TYPE | 111 | 98 | 72 | 113 | 78 |
P value = 0.00013 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 150 | 173 | 170 |
7Q GAIN MUTATED | 15 | 2 | 3 |
7Q GAIN WILD-TYPE | 135 | 171 | 167 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 205 | 163 |
7Q GAIN MUTATED | 14 | 2 | 4 |
7Q GAIN WILD-TYPE | 111 | 203 | 159 |
P value = 5e-05 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 169 | 161 |
7Q GAIN MUTATED | 16 | 1 | 3 |
7Q GAIN WILD-TYPE | 147 | 168 | 158 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 123 | 187 | 105 | 78 |
7Q GAIN MUTATED | 15 | 1 | 2 | 2 |
7Q GAIN WILD-TYPE | 108 | 186 | 103 | 76 |
P value = 0.00033 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
8P GAIN MUTATED | 4 | 2 | 0 |
8P GAIN WILD-TYPE | 30 | 381 | 77 |
P value = 3e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
8Q GAIN MUTATED | 5 | 2 | 0 |
8Q GAIN WILD-TYPE | 29 | 381 | 77 |
P value = 0.00022 (Fisher's exact test), Q value = 0.088
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
11P GAIN MUTATED | 4 | 1 | 1 |
11P GAIN WILD-TYPE | 30 | 382 | 76 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
11Q GAIN MUTATED | 4 | 0 | 1 |
11Q GAIN WILD-TYPE | 30 | 383 | 76 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
12P GAIN MUTATED | 13 | 0 | 1 |
12P GAIN WILD-TYPE | 21 | 383 | 76 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 151 | 70 |
12P GAIN MUTATED | 1 | 13 | 0 |
12P GAIN WILD-TYPE | 272 | 138 | 70 |
P value = 3e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 154 | 55 | 116 | 167 |
12P GAIN MUTATED | 13 | 0 | 1 | 0 |
12P GAIN WILD-TYPE | 141 | 55 | 115 | 167 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 126 | 100 | 73 | 115 | 78 |
12P GAIN MUTATED | 12 | 1 | 1 | 0 | 0 |
12P GAIN WILD-TYPE | 114 | 99 | 72 | 115 | 78 |
P value = 5e-05 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 150 | 173 | 170 |
12P GAIN MUTATED | 12 | 1 | 1 |
12P GAIN WILD-TYPE | 138 | 172 | 169 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 205 | 163 |
12P GAIN MUTATED | 12 | 1 | 1 |
12P GAIN WILD-TYPE | 113 | 204 | 162 |
P value = 3e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 169 | 161 |
12P GAIN MUTATED | 13 | 0 | 1 |
12P GAIN WILD-TYPE | 150 | 169 | 160 |
P value = 3e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 123 | 187 | 105 | 78 |
12P GAIN MUTATED | 12 | 1 | 1 | 0 |
12P GAIN WILD-TYPE | 111 | 186 | 104 | 78 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
12Q GAIN MUTATED | 13 | 0 | 2 |
12Q GAIN WILD-TYPE | 21 | 383 | 75 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 151 | 70 |
12Q GAIN MUTATED | 1 | 14 | 0 |
12Q GAIN WILD-TYPE | 272 | 137 | 70 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 154 | 55 | 116 | 167 |
12Q GAIN MUTATED | 14 | 0 | 1 | 0 |
12Q GAIN WILD-TYPE | 140 | 55 | 115 | 167 |
P value = 4e-05 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 126 | 100 | 73 | 115 | 78 |
12Q GAIN MUTATED | 13 | 1 | 1 | 0 | 0 |
12Q GAIN WILD-TYPE | 113 | 99 | 72 | 115 | 78 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 150 | 173 | 170 |
12Q GAIN MUTATED | 13 | 1 | 1 |
12Q GAIN WILD-TYPE | 137 | 172 | 169 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 205 | 163 |
12Q GAIN MUTATED | 13 | 1 | 1 |
12Q GAIN WILD-TYPE | 112 | 204 | 162 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 169 | 161 |
12Q GAIN MUTATED | 14 | 0 | 1 |
12Q GAIN WILD-TYPE | 149 | 169 | 160 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 123 | 187 | 105 | 78 |
12Q GAIN MUTATED | 13 | 1 | 1 | 0 |
12Q GAIN WILD-TYPE | 110 | 186 | 104 | 78 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
13Q GAIN MUTATED | 5 | 0 | 0 |
13Q GAIN WILD-TYPE | 29 | 383 | 77 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
14Q GAIN MUTATED | 9 | 1 | 1 |
14Q GAIN WILD-TYPE | 25 | 382 | 76 |
P value = 0.00023 (Fisher's exact test), Q value = 0.091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 151 | 70 |
14Q GAIN MUTATED | 1 | 10 | 0 |
14Q GAIN WILD-TYPE | 272 | 141 | 70 |
P value = 0.00049 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 154 | 55 | 116 | 167 |
14Q GAIN MUTATED | 10 | 0 | 0 | 1 |
14Q GAIN WILD-TYPE | 144 | 55 | 116 | 166 |
P value = 9e-05 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 126 | 100 | 73 | 115 | 78 |
14Q GAIN MUTATED | 10 | 0 | 0 | 0 | 1 |
14Q GAIN WILD-TYPE | 116 | 100 | 73 | 115 | 77 |
P value = 0.00045 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 150 | 173 | 170 |
14Q GAIN MUTATED | 9 | 0 | 2 |
14Q GAIN WILD-TYPE | 141 | 173 | 168 |
P value = 7e-05 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 205 | 163 |
14Q GAIN MUTATED | 9 | 0 | 2 |
14Q GAIN WILD-TYPE | 116 | 205 | 161 |
P value = 0.00013 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 123 | 187 | 105 | 78 |
14Q GAIN MUTATED | 9 | 0 | 1 | 1 |
14Q GAIN WILD-TYPE | 114 | 187 | 104 | 77 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
16P GAIN MUTATED | 14 | 0 | 1 |
16P GAIN WILD-TYPE | 20 | 383 | 76 |
P value = 3e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 151 | 70 |
16P GAIN MUTATED | 1 | 13 | 1 |
16P GAIN WILD-TYPE | 272 | 138 | 69 |
P value = 0.00011 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 154 | 55 | 116 | 167 |
16P GAIN MUTATED | 13 | 0 | 1 | 1 |
16P GAIN WILD-TYPE | 141 | 55 | 115 | 166 |
P value = 0.00029 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 126 | 100 | 73 | 115 | 78 |
16P GAIN MUTATED | 12 | 1 | 1 | 1 | 0 |
16P GAIN WILD-TYPE | 114 | 99 | 72 | 114 | 78 |
P value = 0.00013 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 150 | 173 | 170 |
16P GAIN MUTATED | 12 | 1 | 2 |
16P GAIN WILD-TYPE | 138 | 172 | 168 |
P value = 0.00037 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 205 | 163 |
16P GAIN MUTATED | 11 | 2 | 2 |
16P GAIN WILD-TYPE | 114 | 203 | 161 |
P value = 4e-05 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 169 | 161 |
16P GAIN MUTATED | 13 | 0 | 2 |
16P GAIN WILD-TYPE | 150 | 169 | 159 |
P value = 3e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 123 | 187 | 105 | 78 |
16P GAIN MUTATED | 12 | 1 | 1 | 1 |
16P GAIN WILD-TYPE | 111 | 186 | 104 | 77 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
16Q GAIN MUTATED | 13 | 0 | 0 |
16Q GAIN WILD-TYPE | 21 | 383 | 77 |
P value = 0.00011 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 151 | 70 |
16Q GAIN MUTATED | 1 | 11 | 1 |
16Q GAIN WILD-TYPE | 272 | 140 | 69 |
P value = 0.00021 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 205 | 163 |
16Q GAIN MUTATED | 10 | 1 | 2 |
16Q GAIN WILD-TYPE | 115 | 204 | 161 |
P value = 0.00022 (Fisher's exact test), Q value = 0.088
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 169 | 161 |
16Q GAIN MUTATED | 11 | 0 | 2 |
16Q GAIN WILD-TYPE | 152 | 169 | 159 |
P value = 0.00053 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 123 | 187 | 105 | 78 |
16Q GAIN MUTATED | 10 | 1 | 1 | 1 |
16Q GAIN WILD-TYPE | 113 | 186 | 104 | 77 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
17P GAIN MUTATED | 12 | 2 | 2 |
17P GAIN WILD-TYPE | 22 | 381 | 75 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 151 | 70 |
17P GAIN MUTATED | 1 | 15 | 0 |
17P GAIN WILD-TYPE | 272 | 136 | 70 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 154 | 55 | 116 | 167 |
17P GAIN MUTATED | 15 | 0 | 1 | 0 |
17P GAIN WILD-TYPE | 139 | 55 | 115 | 167 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 126 | 100 | 73 | 115 | 78 |
17P GAIN MUTATED | 15 | 0 | 1 | 0 | 0 |
17P GAIN WILD-TYPE | 111 | 100 | 72 | 115 | 78 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 150 | 173 | 170 |
17P GAIN MUTATED | 14 | 1 | 1 |
17P GAIN WILD-TYPE | 136 | 172 | 169 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 205 | 163 |
17P GAIN MUTATED | 14 | 1 | 1 |
17P GAIN WILD-TYPE | 111 | 204 | 162 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 169 | 161 |
17P GAIN MUTATED | 15 | 0 | 1 |
17P GAIN WILD-TYPE | 148 | 169 | 160 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 123 | 187 | 105 | 78 |
17P GAIN MUTATED | 14 | 1 | 1 | 0 |
17P GAIN WILD-TYPE | 109 | 186 | 104 | 78 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
17Q GAIN MUTATED | 13 | 2 | 3 |
17Q GAIN WILD-TYPE | 21 | 381 | 74 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 151 | 70 |
17Q GAIN MUTATED | 2 | 16 | 0 |
17Q GAIN WILD-TYPE | 271 | 135 | 70 |
P value = 3e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 154 | 55 | 116 | 167 |
17Q GAIN MUTATED | 16 | 0 | 1 | 1 |
17Q GAIN WILD-TYPE | 138 | 55 | 115 | 166 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 126 | 100 | 73 | 115 | 78 |
17Q GAIN MUTATED | 16 | 0 | 1 | 1 | 0 |
17Q GAIN WILD-TYPE | 110 | 100 | 72 | 114 | 78 |
P value = 3e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 150 | 173 | 170 |
17Q GAIN MUTATED | 15 | 2 | 1 |
17Q GAIN WILD-TYPE | 135 | 171 | 169 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 205 | 163 |
17Q GAIN MUTATED | 15 | 1 | 2 |
17Q GAIN WILD-TYPE | 110 | 204 | 161 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 169 | 161 |
17Q GAIN MUTATED | 16 | 1 | 1 |
17Q GAIN WILD-TYPE | 147 | 168 | 160 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 123 | 187 | 105 | 78 |
17Q GAIN MUTATED | 15 | 1 | 1 | 1 |
17Q GAIN WILD-TYPE | 108 | 186 | 104 | 77 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
18P GAIN MUTATED | 5 | 0 | 1 |
18P GAIN WILD-TYPE | 29 | 383 | 76 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
18Q GAIN MUTATED | 5 | 0 | 1 |
18Q GAIN WILD-TYPE | 29 | 383 | 76 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
19P GAIN MUTATED | 8 | 0 | 0 |
19P GAIN WILD-TYPE | 26 | 383 | 77 |
P value = 0.00021 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 151 | 70 |
19P GAIN MUTATED | 0 | 8 | 0 |
19P GAIN WILD-TYPE | 273 | 143 | 70 |
P value = 0.00063 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 154 | 55 | 116 | 167 |
19P GAIN MUTATED | 8 | 0 | 0 | 0 |
19P GAIN WILD-TYPE | 146 | 55 | 116 | 167 |
P value = 0.00014 (Fisher's exact test), Q value = 0.057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 126 | 100 | 73 | 115 | 78 |
19P GAIN MUTATED | 8 | 0 | 0 | 0 | 0 |
19P GAIN WILD-TYPE | 118 | 100 | 73 | 115 | 78 |
P value = 1e-04 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 150 | 173 | 170 |
19P GAIN MUTATED | 8 | 0 | 0 |
19P GAIN WILD-TYPE | 142 | 173 | 170 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 205 | 163 |
19P GAIN MUTATED | 8 | 0 | 0 |
19P GAIN WILD-TYPE | 117 | 205 | 163 |
P value = 3e-04 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 169 | 161 |
19P GAIN MUTATED | 8 | 0 | 0 |
19P GAIN WILD-TYPE | 155 | 169 | 161 |
P value = 4e-05 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 123 | 187 | 105 | 78 |
19P GAIN MUTATED | 8 | 0 | 0 | 0 |
19P GAIN WILD-TYPE | 115 | 187 | 105 | 78 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
19Q GAIN MUTATED | 9 | 0 | 1 |
19Q GAIN WILD-TYPE | 25 | 383 | 76 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 151 | 70 |
19Q GAIN MUTATED | 0 | 10 | 0 |
19Q GAIN WILD-TYPE | 273 | 141 | 70 |
P value = 0.00012 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 154 | 55 | 116 | 167 |
19Q GAIN MUTATED | 10 | 0 | 0 | 0 |
19Q GAIN WILD-TYPE | 144 | 55 | 116 | 167 |
P value = 3e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 126 | 100 | 73 | 115 | 78 |
19Q GAIN MUTATED | 10 | 0 | 0 | 0 | 0 |
19Q GAIN WILD-TYPE | 116 | 100 | 73 | 115 | 78 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 150 | 173 | 170 |
19Q GAIN MUTATED | 10 | 0 | 0 |
19Q GAIN WILD-TYPE | 140 | 173 | 170 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 205 | 163 |
19Q GAIN MUTATED | 10 | 0 | 0 |
19Q GAIN WILD-TYPE | 115 | 205 | 163 |
P value = 5e-05 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 169 | 161 |
19Q GAIN MUTATED | 10 | 0 | 0 |
19Q GAIN WILD-TYPE | 153 | 169 | 161 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 123 | 187 | 105 | 78 |
19Q GAIN MUTATED | 10 | 0 | 0 | 0 |
19Q GAIN WILD-TYPE | 113 | 187 | 105 | 78 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
20P GAIN MUTATED | 12 | 0 | 0 |
20P GAIN WILD-TYPE | 22 | 383 | 77 |
P value = 0.00025 (Fisher's exact test), Q value = 0.098
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 151 | 70 |
20P GAIN MUTATED | 1 | 10 | 1 |
20P GAIN WILD-TYPE | 272 | 141 | 69 |
P value = 0.00042 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 126 | 100 | 73 | 115 | 78 |
20P GAIN MUTATED | 10 | 0 | 1 | 1 | 0 |
20P GAIN WILD-TYPE | 116 | 100 | 72 | 114 | 78 |
P value = 0.00044 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 205 | 163 |
20P GAIN MUTATED | 9 | 1 | 2 |
20P GAIN WILD-TYPE | 116 | 204 | 161 |
P value = 0.00038 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 169 | 161 |
20P GAIN MUTATED | 10 | 0 | 2 |
20P GAIN WILD-TYPE | 153 | 169 | 159 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
20Q GAIN MUTATED | 12 | 0 | 0 |
20Q GAIN WILD-TYPE | 22 | 383 | 77 |
P value = 0.00033 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 151 | 70 |
20Q GAIN MUTATED | 1 | 10 | 1 |
20Q GAIN WILD-TYPE | 272 | 141 | 69 |
P value = 0.00039 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 126 | 100 | 73 | 115 | 78 |
20Q GAIN MUTATED | 10 | 0 | 1 | 1 | 0 |
20Q GAIN WILD-TYPE | 116 | 100 | 72 | 114 | 78 |
P value = 0.00039 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 205 | 163 |
20Q GAIN MUTATED | 9 | 1 | 2 |
20Q GAIN WILD-TYPE | 116 | 204 | 161 |
P value = 0.00036 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 169 | 161 |
20Q GAIN MUTATED | 10 | 0 | 2 |
20Q GAIN WILD-TYPE | 153 | 169 | 159 |
P value = 3e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
21Q GAIN MUTATED | 4 | 0 | 1 |
21Q GAIN WILD-TYPE | 30 | 383 | 76 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
XQ GAIN MUTATED | 7 | 2 | 0 |
XQ GAIN WILD-TYPE | 27 | 381 | 77 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
1P LOSS MUTATED | 4 | 0 | 0 |
1P LOSS WILD-TYPE | 30 | 383 | 77 |
P value = 0.00036 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
1Q LOSS MUTATED | 3 | 0 | 0 |
1Q LOSS WILD-TYPE | 31 | 383 | 77 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
2P LOSS MUTATED | 9 | 0 | 1 |
2P LOSS WILD-TYPE | 25 | 383 | 76 |
P value = 3e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 151 | 70 |
2P LOSS MUTATED | 0 | 10 | 0 |
2P LOSS WILD-TYPE | 273 | 141 | 70 |
P value = 8e-05 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 154 | 55 | 116 | 167 |
2P LOSS MUTATED | 10 | 0 | 0 | 0 |
2P LOSS WILD-TYPE | 144 | 55 | 116 | 167 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 126 | 100 | 73 | 115 | 78 |
2P LOSS MUTATED | 10 | 0 | 0 | 0 | 0 |
2P LOSS WILD-TYPE | 116 | 100 | 73 | 115 | 78 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 150 | 173 | 170 |
2P LOSS MUTATED | 10 | 0 | 0 |
2P LOSS WILD-TYPE | 140 | 173 | 170 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 205 | 163 |
2P LOSS MUTATED | 10 | 0 | 0 |
2P LOSS WILD-TYPE | 115 | 205 | 163 |
P value = 6e-05 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 169 | 161 |
2P LOSS MUTATED | 10 | 0 | 0 |
2P LOSS WILD-TYPE | 153 | 169 | 161 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 123 | 187 | 105 | 78 |
2P LOSS MUTATED | 10 | 0 | 0 | 0 |
2P LOSS WILD-TYPE | 113 | 187 | 105 | 78 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
2Q LOSS MUTATED | 10 | 0 | 0 |
2Q LOSS WILD-TYPE | 24 | 383 | 77 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 151 | 70 |
2Q LOSS MUTATED | 0 | 10 | 0 |
2Q LOSS WILD-TYPE | 273 | 141 | 70 |
P value = 8e-05 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 154 | 55 | 116 | 167 |
2Q LOSS MUTATED | 10 | 0 | 0 | 0 |
2Q LOSS WILD-TYPE | 144 | 55 | 116 | 167 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 126 | 100 | 73 | 115 | 78 |
2Q LOSS MUTATED | 10 | 0 | 0 | 0 | 0 |
2Q LOSS WILD-TYPE | 116 | 100 | 73 | 115 | 78 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 150 | 173 | 170 |
2Q LOSS MUTATED | 10 | 0 | 0 |
2Q LOSS WILD-TYPE | 140 | 173 | 170 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 205 | 163 |
2Q LOSS MUTATED | 10 | 0 | 0 |
2Q LOSS WILD-TYPE | 115 | 205 | 163 |
P value = 5e-05 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 169 | 161 |
2Q LOSS MUTATED | 10 | 0 | 0 |
2Q LOSS WILD-TYPE | 153 | 169 | 161 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 123 | 187 | 105 | 78 |
2Q LOSS MUTATED | 10 | 0 | 0 | 0 |
2Q LOSS WILD-TYPE | 113 | 187 | 105 | 78 |
P value = 0.00026 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
3P LOSS MUTATED | 3 | 0 | 0 |
3P LOSS WILD-TYPE | 31 | 383 | 77 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
3Q LOSS MUTATED | 4 | 0 | 0 |
3Q LOSS WILD-TYPE | 30 | 383 | 77 |
P value = 6e-05 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
6Q LOSS MUTATED | 5 | 2 | 0 |
6Q LOSS WILD-TYPE | 29 | 381 | 77 |
P value = 5e-05 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
8P LOSS MUTATED | 4 | 0 | 0 |
8P LOSS WILD-TYPE | 30 | 383 | 77 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
8Q LOSS MUTATED | 4 | 0 | 0 |
8Q LOSS WILD-TYPE | 30 | 383 | 77 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
9P LOSS MUTATED | 13 | 5 | 1 |
9P LOSS WILD-TYPE | 21 | 378 | 76 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
9Q LOSS MUTATED | 16 | 7 | 1 |
9Q LOSS WILD-TYPE | 18 | 376 | 76 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
10P LOSS MUTATED | 7 | 0 | 0 |
10P LOSS WILD-TYPE | 27 | 383 | 77 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
10Q LOSS MUTATED | 6 | 0 | 0 |
10Q LOSS WILD-TYPE | 28 | 383 | 77 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
11P LOSS MUTATED | 6 | 0 | 1 |
11P LOSS WILD-TYPE | 28 | 383 | 76 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
11Q LOSS MUTATED | 6 | 2 | 1 |
11Q LOSS WILD-TYPE | 28 | 381 | 76 |
P value = 0.00032 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 150 | 173 | 170 |
11Q LOSS MUTATED | 8 | 0 | 1 |
11Q LOSS WILD-TYPE | 142 | 173 | 169 |
P value = 1e-04 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
15Q LOSS MUTATED | 5 | 2 | 1 |
15Q LOSS WILD-TYPE | 29 | 381 | 76 |
P value = 0.00016 (Fisher's exact test), Q value = 0.065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 151 | 70 |
15Q LOSS MUTATED | 0 | 8 | 0 |
15Q LOSS WILD-TYPE | 273 | 143 | 70 |
P value = 0.00045 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 154 | 55 | 116 | 167 |
15Q LOSS MUTATED | 8 | 0 | 0 | 0 |
15Q LOSS WILD-TYPE | 146 | 55 | 116 | 167 |
P value = 0.00016 (Fisher's exact test), Q value = 0.065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 126 | 100 | 73 | 115 | 78 |
15Q LOSS MUTATED | 8 | 0 | 0 | 0 | 0 |
15Q LOSS WILD-TYPE | 118 | 100 | 73 | 115 | 78 |
P value = 9e-05 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 150 | 173 | 170 |
15Q LOSS MUTATED | 8 | 0 | 0 |
15Q LOSS WILD-TYPE | 142 | 173 | 170 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 205 | 163 |
15Q LOSS MUTATED | 8 | 0 | 0 |
15Q LOSS WILD-TYPE | 117 | 205 | 163 |
P value = 0.00022 (Fisher's exact test), Q value = 0.088
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 169 | 161 |
15Q LOSS MUTATED | 8 | 0 | 0 |
15Q LOSS WILD-TYPE | 155 | 169 | 161 |
P value = 5e-05 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 123 | 187 | 105 | 78 |
15Q LOSS MUTATED | 8 | 0 | 0 | 0 |
15Q LOSS WILD-TYPE | 115 | 187 | 105 | 78 |
P value = 0.00029 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
18P LOSS MUTATED | 3 | 0 | 1 |
18P LOSS WILD-TYPE | 31 | 383 | 76 |
P value = 0.00017 (Fisher's exact test), Q value = 0.069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
18Q LOSS MUTATED | 3 | 0 | 1 |
18Q LOSS WILD-TYPE | 31 | 383 | 76 |
P value = 6e-05 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
21Q LOSS MUTATED | 5 | 2 | 1 |
21Q LOSS WILD-TYPE | 29 | 381 | 76 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 383 | 77 |
22Q LOSS MUTATED | 9 | 0 | 77 |
22Q LOSS WILD-TYPE | 25 | 383 | 0 |
P value = 3e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 273 | 151 | 70 |
22Q LOSS MUTATED | 35 | 45 | 6 |
22Q LOSS WILD-TYPE | 238 | 106 | 64 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 154 | 55 | 116 | 167 |
22Q LOSS MUTATED | 45 | 8 | 26 | 7 |
22Q LOSS WILD-TYPE | 109 | 47 | 90 | 160 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 126 | 100 | 73 | 115 | 78 |
22Q LOSS MUTATED | 40 | 13 | 22 | 9 | 2 |
22Q LOSS WILD-TYPE | 86 | 87 | 51 | 106 | 76 |
P value = 0.00018 (Fisher's exact test), Q value = 0.073
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 205 | 163 |
22Q LOSS MUTATED | 38 | 28 | 20 |
22Q LOSS WILD-TYPE | 87 | 177 | 143 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 163 | 169 | 161 |
22Q LOSS MUTATED | 49 | 18 | 19 |
22Q LOSS WILD-TYPE | 114 | 151 | 142 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 123 | 187 | 105 | 78 |
22Q LOSS MUTATED | 38 | 26 | 18 | 4 |
22Q LOSS WILD-TYPE | 85 | 161 | 87 | 74 |
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Copy number data file = transformed.cor.cli.txt
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Molecular subtypes file = THCA-TP.transferedmergedcluster.txt
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Number of patients = 494
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Number of significantly arm-level cnvs = 57
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Number of molecular subtypes = 10
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Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.