Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_xq22.3	15 (3%)	479	2e-05	0.0051	0.71706	1	0.84067	1	0.50411	1	0.77351	1	0.98822	1	1	1	0.71307	1	0.94485	1	0.9019	1
del_1q24.2	3 (1%)	491	0.00037	0.0829	0.04883	1	NA	NA	NA	NA	0.095859	1	0.11089	1	0.02813	1	0.01638	1	0.070119	1	0.0283	1
del_2p23.1	12 (2%)	482	9.9999e-06	0.00288	9.9999e-06	0.00288	0.77039	1	0.092149	1	3e-05	0.00744	3e-05	0.00744	9.9999e-06	0.00288	9.9999e-06	0.00288	2e-05	0.0051	9.9999e-06	0.00288
del_2q35	12 (2%)	482	9.9999e-06	0.00288	9.9999e-06	0.00288	0.53915	1	0.023	1	3e-05	0.00744	9.9999e-06	0.00288	9.9999e-06	0.00288	2e-05	0.0051	9.9999e-06	0.00288	9.9999e-06	0.00288
del_5p15.2	4 (1%)	490	0.34667	1	0.36611	1	NA	NA	NA	NA	0.41255	1	0.54115	1	0.55593	1	0.68942	1	0.4799	1	0.16432	1
del_6q22.31	7 (1%)	487	5.9999e-05	0.0144	0.00222	0.422	0.01261	1	0.5736	1	0.03206	1	0.0138	1	0.00327	0.605	0.00091999	0.189	0.0097099	1	0.00181	0.349
del_7q34	4 (1%)	490	0.63946	1	0.79442	1	NA	NA	NA	NA	0.73734	1	0.81568	1	0.68853	1	1	1	1	1	1	1
del_8p23.2	4 (1%)	490	9.9999e-06	0.00288	0.01867	1	NA	NA	NA	NA	0.04212	1	0.03548	1	0.0085799	1	0.0037	0.681	0.02295	1	0.0097299	1
del_8p22	4 (1%)	490	3e-05	0.00744	0.01823	1	NA	NA	NA	NA	0.04313	1	0.03758	1	0.0081799	1	0.00379	0.694	0.02284	1	0.0094199	1
del_8p12	4 (1%)	490	3e-05	0.00744	0.0187	1	NA	NA	NA	NA	0.04375	1	0.03676	1	0.0086099	1	0.00396	0.721	0.02245	1	0.0091799	1
del_8q24.22	7 (1%)	487	6.9999e-05	0.0167	0.00046	0.101	0.83762	1	0.17239	1	0.00172	0.335	0.00045	0.0994	2e-04	0.046	0.00173	0.336	0.00067999	0.145	0.00014	0.0328
del_9q21.13	24 (5%)	470	9.9999e-06	0.00288	0.056709	1	0.17377	1	0.11507	1	0.10396	1	0.03969	1	0.0090899	1	0.00441	0.798	0.01229	1	0.00246	0.462
del_10q21.2	12 (2%)	482	5e-05	0.012	0.065399	1	0.15651	1	0.67495	1	0.01851	1	0.01535	1	0.13607	1	0.17444	1	0.03524	1	0.17958	1
del_10q23.31	12 (2%)	482	9.9999e-06	0.00288	0.0023	0.435	0.051479	1	0.14894	1	0.00065999	0.141	0.00070999	0.15	0.00458	0.82	0.00043	0.0955	0.00042	0.0937	0.00079999	0.167
del_11p15.1	7 (1%)	487	9.9999e-06	0.00288	0.01151	1	0.4939	1	0.95813	1	0.0065699	1	0.01385	1	0.00312	0.583	0.00117	0.235	0.0098199	1	0.00312	0.583
del_13q12.3	16 (3%)	478	0.0060599	1	0.00059999	0.129	0.18445	1	0.084959	1	0.00050999	0.111	0.01041	1	0.03488	1	0.0053699	0.934	0.0118	1	0.0065999	1
del_13q21.31	18 (4%)	476	0.0052799	0.924	0.01674	1	0.055329	1	0.18561	1	0.00106	0.216	0.00159	0.313	0.00452	0.814	0.00015	0.0349	0.00485	0.858	0.00469	0.835
del_15q25.3	9 (2%)	485	0.00021	0.0481	0.0014	0.279	0.24259	1	0.061839	1	0.0049	0.862	0.00106	0.216	0.00068999	0.146	0.00016	0.0371	0.00153	0.303	0.00045	0.0994
del_16q23.3	6 (1%)	488	0.04895	1	0.11968	1	0.44411	1	0.4448	1	0.28663	1	0.1008	1	0.19785	1	0.21144	1	0.2955	1	0.25973	1
del_17p13.1	8 (2%)	486	0.00186	0.357	0.41637	1	1	1	0.38866	1	0.65093	1	0.64692	1	0.32906	1	0.14145	1	0.67434	1	0.19205	1
del_18p11.21	4 (1%)	490	0.00023	0.052	0.18329	1	1	1	0.38641	1	0.23777	1	0.16072	1	0.11345	1	0.064179	1	0.02295	1	0.20694	1
del_18q22.2	5 (1%)	489	0.00135	0.27	0.059269	1	1	1	0.50522	1	0.11595	1	0.061499	1	0.04097	1	0.01884	1	0.0076999	1	0.064229	1
del_19p13.2	7 (1%)	487	0.00070999	0.15	0.00048	0.105	0.85643	1	0.29944	1	0.00171	0.335	0.00027	0.0607	0.00022	0.0499	0.00186	0.357	0.00089999	0.185	0.00021	0.0481
del_21q21.1	9 (2%)	485	5.9999e-05	0.0144	0.30999	1	0.14665	1	0.3235	1	0.73931	1	0.70891	1	0.053579	1	0.11907	1	0.053639	1	0.02125	1
del_22q13.1	86 (17%)	408	9.9999e-06	0.00288	9.9999e-06	0.00288	0.11866	1	0.504	1	9.9999e-06	0.00288	9.9999e-06	0.00288	0.00080999	0.168	0.00013	0.0305	9.9999e-06	0.00288	2e-05	0.0051
del_22q13.2	86 (17%)	408	9.9999e-06	0.00288	2e-05	0.0051	0.1189	1	0.50449	1	9.9999e-06	0.00288	9.9999e-06	0.00288	0.0011	0.222	0.00011	0.026	9.9999e-06	0.00288	3e-05	0.00744
del_22q13.31	86 (17%)	408	9.9999e-06	0.00288	3e-05	0.00744	0.11831	1	0.501	1	9.9999e-06	0.00288	9.9999e-06	0.00288	0.00088999	0.184	0.00017	0.0393	2e-05	0.0051	9.9999e-06	0.00288
del_22q13.32	87 (18%)	407	9.9999e-06	0.00288	9.9999e-06	0.00288	0.11817	1	0.50187	1	9.9999e-06	0.00288	9.9999e-06	0.00288	0.00050999	0.111	7.9999e-05	0.019	2e-05	0.0051	9.9999e-06	0.00288
del_xq22.1	6 (1%)	488	0.074079	1	0.42109	1	0.098289	1	0.2284	1	0.59033	1	0.55717	1	0.5275	1	0.446	1	0.70124	1	0.47177	1
del_xq22.3	4 (1%)	490	0.053979	1	0.04587	1	0.27594	1	0.19475	1	0.092009	1	0.27893	1	0.11422	1	0.064519	1	0.22718	1	0.2073	1